Multiple sequence alignment - TraesCS3A01G482400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G482400 chr3A 100.000 2348 0 0 1 2348 713106904 713109251 0.000000e+00 4337.0
1 TraesCS3A01G482400 chr3A 80.526 190 30 4 3 191 724651743 724651926 3.150000e-29 139.0
2 TraesCS3A01G482400 chr3A 77.928 222 38 9 1977 2193 136412597 136412382 6.810000e-26 128.0
3 TraesCS3A01G482400 chr3D 83.855 1022 82 40 718 1689 577499806 577500794 0.000000e+00 896.0
4 TraesCS3A01G482400 chr3D 88.462 598 62 5 1753 2348 577500795 577501387 0.000000e+00 715.0
5 TraesCS3A01G482400 chr3D 90.769 195 18 0 1 195 597472448 597472254 6.440000e-66 261.0
6 TraesCS3A01G482400 chr3B 83.176 850 77 25 739 1557 770666147 770666961 0.000000e+00 717.0
7 TraesCS3A01G482400 chr3B 88.462 468 40 8 194 660 770662561 770663015 9.480000e-154 553.0
8 TraesCS3A01G482400 chr3B 84.967 153 23 0 41 193 769887440 769887592 3.120000e-34 156.0
9 TraesCS3A01G482400 chr3B 84.967 153 23 0 41 193 770189223 770189375 3.120000e-34 156.0
10 TraesCS3A01G482400 chr3B 78.146 151 31 2 1970 2118 431146079 431145929 6.910000e-16 95.3
11 TraesCS3A01G482400 chr3B 83.824 68 10 1 2052 2119 779203600 779203666 1.950000e-06 63.9
12 TraesCS3A01G482400 chr4A 97.382 191 5 0 3 193 50360976 50360786 2.250000e-85 326.0
13 TraesCS3A01G482400 chr4A 85.340 191 28 0 3 193 375730007 375730197 5.120000e-47 198.0
14 TraesCS3A01G482400 chr5D 83.158 190 32 0 4 193 481878140 481878329 8.630000e-40 174.0
15 TraesCS3A01G482400 chr5D 74.462 325 71 11 1986 2306 518800521 518800837 1.890000e-26 130.0
16 TraesCS3A01G482400 chr7A 81.675 191 35 0 3 193 413624747 413624937 2.420000e-35 159.0
17 TraesCS3A01G482400 chr1D 92.079 101 8 0 93 193 456250131 456250231 2.430000e-30 143.0
18 TraesCS3A01G482400 chr4B 80.000 160 27 5 1963 2118 630031605 630031763 1.910000e-21 113.0
19 TraesCS3A01G482400 chr4B 78.065 155 29 5 1968 2118 66846177 66846024 2.480000e-15 93.5
20 TraesCS3A01G482400 chr5B 79.470 151 27 4 1971 2118 712896192 712896341 1.150000e-18 104.0
21 TraesCS3A01G482400 chr6A 77.931 145 28 4 1977 2118 346001736 346001593 1.160000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G482400 chr3A 713106904 713109251 2347 False 4337.0 4337 100.0000 1 2348 1 chr3A.!!$F1 2347
1 TraesCS3A01G482400 chr3D 577499806 577501387 1581 False 805.5 896 86.1585 718 2348 2 chr3D.!!$F1 1630
2 TraesCS3A01G482400 chr3B 770662561 770666961 4400 False 635.0 717 85.8190 194 1557 2 chr3B.!!$F4 1363

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.036164 AAATAGTGTGGCTGTGGCGA 59.964 50.0 0.0 0.0 39.81 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2121 5234 0.036732 TGGGCATTGAGGACACTGTC 59.963 55.0 0.0 0.0 31.92 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.365514 TCTGTGTAGAAAAATGGAGGCA 57.634 40.909 0.00 0.00 0.00 4.75
22 23 4.724399 TCTGTGTAGAAAAATGGAGGCAA 58.276 39.130 0.00 0.00 0.00 4.52
23 24 4.761739 TCTGTGTAGAAAAATGGAGGCAAG 59.238 41.667 0.00 0.00 0.00 4.01
24 25 4.469657 TGTGTAGAAAAATGGAGGCAAGT 58.530 39.130 0.00 0.00 0.00 3.16
25 26 4.518970 TGTGTAGAAAAATGGAGGCAAGTC 59.481 41.667 0.00 0.00 0.00 3.01
26 27 4.518970 GTGTAGAAAAATGGAGGCAAGTCA 59.481 41.667 0.00 0.00 0.00 3.41
27 28 4.761739 TGTAGAAAAATGGAGGCAAGTCAG 59.238 41.667 0.00 0.00 0.00 3.51
28 29 4.104383 AGAAAAATGGAGGCAAGTCAGA 57.896 40.909 0.00 0.00 0.00 3.27
29 30 4.077822 AGAAAAATGGAGGCAAGTCAGAG 58.922 43.478 0.00 0.00 0.00 3.35
30 31 3.795688 AAAATGGAGGCAAGTCAGAGA 57.204 42.857 0.00 0.00 0.00 3.10
31 32 3.347077 AAATGGAGGCAAGTCAGAGAG 57.653 47.619 0.00 0.00 0.00 3.20
32 33 2.244486 ATGGAGGCAAGTCAGAGAGA 57.756 50.000 0.00 0.00 0.00 3.10
33 34 2.244486 TGGAGGCAAGTCAGAGAGAT 57.756 50.000 0.00 0.00 0.00 2.75
34 35 2.544721 TGGAGGCAAGTCAGAGAGATT 58.455 47.619 0.00 0.00 0.00 2.40
35 36 3.713003 TGGAGGCAAGTCAGAGAGATTA 58.287 45.455 0.00 0.00 0.00 1.75
36 37 4.293494 TGGAGGCAAGTCAGAGAGATTAT 58.707 43.478 0.00 0.00 0.00 1.28
37 38 4.718774 TGGAGGCAAGTCAGAGAGATTATT 59.281 41.667 0.00 0.00 0.00 1.40
38 39 5.055812 GGAGGCAAGTCAGAGAGATTATTG 58.944 45.833 0.00 0.00 0.00 1.90
39 40 5.163364 GGAGGCAAGTCAGAGAGATTATTGA 60.163 44.000 0.00 0.00 0.00 2.57
40 41 5.916318 AGGCAAGTCAGAGAGATTATTGAG 58.084 41.667 0.00 0.00 0.00 3.02
41 42 5.055812 GGCAAGTCAGAGAGATTATTGAGG 58.944 45.833 0.00 0.00 0.00 3.86
42 43 4.511082 GCAAGTCAGAGAGATTATTGAGGC 59.489 45.833 0.00 0.00 0.00 4.70
43 44 5.668471 CAAGTCAGAGAGATTATTGAGGCA 58.332 41.667 0.00 0.00 0.00 4.75
44 45 5.275067 AGTCAGAGAGATTATTGAGGCAC 57.725 43.478 0.00 0.00 0.00 5.01
46 47 5.049167 GTCAGAGAGATTATTGAGGCACTG 58.951 45.833 0.00 0.00 41.55 3.66
47 48 4.713814 TCAGAGAGATTATTGAGGCACTGT 59.286 41.667 0.00 0.00 41.55 3.55
48 49 5.893824 TCAGAGAGATTATTGAGGCACTGTA 59.106 40.000 0.00 0.00 41.55 2.74
49 50 5.982516 CAGAGAGATTATTGAGGCACTGTAC 59.017 44.000 0.00 0.00 41.55 2.90
50 51 5.658634 AGAGAGATTATTGAGGCACTGTACA 59.341 40.000 0.00 0.00 41.55 2.90
51 52 6.326064 AGAGAGATTATTGAGGCACTGTACAT 59.674 38.462 0.00 0.00 41.55 2.29
52 53 7.507277 AGAGAGATTATTGAGGCACTGTACATA 59.493 37.037 0.00 0.00 41.55 2.29
53 54 7.437748 AGAGATTATTGAGGCACTGTACATAC 58.562 38.462 0.00 0.00 41.55 2.39
54 55 7.288852 AGAGATTATTGAGGCACTGTACATACT 59.711 37.037 0.00 0.00 41.55 2.12
55 56 8.478775 AGATTATTGAGGCACTGTACATACTA 57.521 34.615 0.00 0.00 41.55 1.82
56 57 8.361139 AGATTATTGAGGCACTGTACATACTAC 58.639 37.037 0.00 0.00 41.55 2.73
57 58 5.932619 ATTGAGGCACTGTACATACTACA 57.067 39.130 0.00 0.00 41.55 2.74
58 59 5.932619 TTGAGGCACTGTACATACTACAT 57.067 39.130 0.00 0.00 41.55 2.29
59 60 5.932619 TGAGGCACTGTACATACTACATT 57.067 39.130 0.00 0.00 41.55 2.71
60 61 5.660460 TGAGGCACTGTACATACTACATTG 58.340 41.667 0.00 0.00 41.55 2.82
61 62 5.186992 TGAGGCACTGTACATACTACATTGT 59.813 40.000 0.00 0.00 41.55 2.71
62 63 6.378848 TGAGGCACTGTACATACTACATTGTA 59.621 38.462 0.00 0.00 41.55 2.41
63 64 6.806751 AGGCACTGTACATACTACATTGTAG 58.193 40.000 19.90 19.90 37.18 2.74
64 65 6.605995 AGGCACTGTACATACTACATTGTAGA 59.394 38.462 26.58 12.89 37.18 2.59
65 66 7.287927 AGGCACTGTACATACTACATTGTAGAT 59.712 37.037 26.58 14.31 37.18 1.98
66 67 7.382488 GGCACTGTACATACTACATTGTAGATG 59.618 40.741 26.58 23.64 32.75 2.90
67 68 8.135529 GCACTGTACATACTACATTGTAGATGA 58.864 37.037 26.58 13.49 32.75 2.92
77 78 7.426410 ACTACATTGTAGATGATTACTGTCGG 58.574 38.462 26.58 0.00 0.00 4.79
78 79 6.222038 ACATTGTAGATGATTACTGTCGGT 57.778 37.500 0.00 0.00 0.00 4.69
79 80 7.342769 ACATTGTAGATGATTACTGTCGGTA 57.657 36.000 0.00 0.00 0.00 4.02
80 81 7.778083 ACATTGTAGATGATTACTGTCGGTAA 58.222 34.615 6.72 6.72 43.49 2.85
95 96 8.748380 ACTGTCGGTAATTACTGTAGTTAAAC 57.252 34.615 21.16 12.14 31.88 2.01
96 97 8.359642 ACTGTCGGTAATTACTGTAGTTAAACA 58.640 33.333 21.16 15.34 31.88 2.83
97 98 9.362539 CTGTCGGTAATTACTGTAGTTAAACAT 57.637 33.333 21.16 0.00 34.25 2.71
98 99 9.709495 TGTCGGTAATTACTGTAGTTAAACATT 57.291 29.630 21.16 0.00 34.25 2.71
99 100 9.962759 GTCGGTAATTACTGTAGTTAAACATTG 57.037 33.333 21.16 0.00 34.25 2.82
100 101 9.709495 TCGGTAATTACTGTAGTTAAACATTGT 57.291 29.630 21.16 0.00 34.25 2.71
107 108 9.610705 TTACTGTAGTTAAACATTGTACCAACA 57.389 29.630 9.43 3.75 0.00 3.33
108 109 8.685838 ACTGTAGTTAAACATTGTACCAACAT 57.314 30.769 9.43 1.25 34.97 2.71
109 110 8.564574 ACTGTAGTTAAACATTGTACCAACATG 58.435 33.333 0.00 0.00 34.97 3.21
110 111 7.364200 TGTAGTTAAACATTGTACCAACATGC 58.636 34.615 0.00 0.00 34.97 4.06
111 112 6.398234 AGTTAAACATTGTACCAACATGCA 57.602 33.333 0.00 0.00 34.97 3.96
112 113 6.810911 AGTTAAACATTGTACCAACATGCAA 58.189 32.000 0.00 0.00 34.97 4.08
113 114 7.268586 AGTTAAACATTGTACCAACATGCAAA 58.731 30.769 0.00 0.00 34.97 3.68
114 115 7.930865 AGTTAAACATTGTACCAACATGCAAAT 59.069 29.630 0.00 0.00 34.97 2.32
115 116 9.197694 GTTAAACATTGTACCAACATGCAAATA 57.802 29.630 0.00 0.00 34.97 1.40
116 117 7.887996 AAACATTGTACCAACATGCAAATAG 57.112 32.000 0.00 0.00 34.97 1.73
117 118 6.588719 ACATTGTACCAACATGCAAATAGT 57.411 33.333 0.00 0.00 34.97 2.12
118 119 6.389091 ACATTGTACCAACATGCAAATAGTG 58.611 36.000 0.00 0.00 34.97 2.74
119 120 6.015519 ACATTGTACCAACATGCAAATAGTGT 60.016 34.615 0.00 0.00 34.97 3.55
120 121 5.369685 TGTACCAACATGCAAATAGTGTG 57.630 39.130 0.00 0.00 0.00 3.82
121 122 3.940209 ACCAACATGCAAATAGTGTGG 57.060 42.857 0.00 0.00 0.00 4.17
122 123 2.029110 ACCAACATGCAAATAGTGTGGC 60.029 45.455 0.00 0.00 0.00 5.01
123 124 2.231964 CCAACATGCAAATAGTGTGGCT 59.768 45.455 0.00 0.00 0.00 4.75
124 125 3.247442 CAACATGCAAATAGTGTGGCTG 58.753 45.455 0.00 0.00 0.00 4.85
125 126 2.517959 ACATGCAAATAGTGTGGCTGT 58.482 42.857 0.00 0.00 0.00 4.40
126 127 2.229543 ACATGCAAATAGTGTGGCTGTG 59.770 45.455 0.00 0.00 0.00 3.66
127 128 1.246649 TGCAAATAGTGTGGCTGTGG 58.753 50.000 0.00 0.00 0.00 4.17
128 129 0.109132 GCAAATAGTGTGGCTGTGGC 60.109 55.000 0.00 0.00 37.82 5.01
129 130 0.168788 CAAATAGTGTGGCTGTGGCG 59.831 55.000 0.00 0.00 39.81 5.69
130 131 0.036164 AAATAGTGTGGCTGTGGCGA 59.964 50.000 0.00 0.00 39.81 5.54
131 132 0.253044 AATAGTGTGGCTGTGGCGAT 59.747 50.000 0.00 0.00 39.81 4.58
132 133 0.462581 ATAGTGTGGCTGTGGCGATG 60.463 55.000 0.00 0.00 39.81 3.84
133 134 4.107051 GTGTGGCTGTGGCGATGC 62.107 66.667 0.00 0.00 39.81 3.91
134 135 4.639906 TGTGGCTGTGGCGATGCA 62.640 61.111 0.00 0.00 39.81 3.96
135 136 3.364441 GTGGCTGTGGCGATGCAA 61.364 61.111 0.00 0.00 39.81 4.08
136 137 2.596923 TGGCTGTGGCGATGCAAA 60.597 55.556 0.00 0.00 39.81 3.68
137 138 2.180017 GGCTGTGGCGATGCAAAG 59.820 61.111 0.00 0.00 39.81 2.77
138 139 2.629656 GGCTGTGGCGATGCAAAGT 61.630 57.895 0.00 0.00 39.81 2.66
139 140 1.154150 GCTGTGGCGATGCAAAGTC 60.154 57.895 0.00 0.00 0.00 3.01
140 141 1.855213 GCTGTGGCGATGCAAAGTCA 61.855 55.000 0.00 0.00 0.00 3.41
141 142 0.167470 CTGTGGCGATGCAAAGTCAG 59.833 55.000 0.00 0.00 0.00 3.51
142 143 1.236616 TGTGGCGATGCAAAGTCAGG 61.237 55.000 0.00 0.00 0.00 3.86
143 144 1.675310 TGGCGATGCAAAGTCAGGG 60.675 57.895 0.00 0.00 0.00 4.45
144 145 1.377202 GGCGATGCAAAGTCAGGGA 60.377 57.895 0.00 0.00 0.00 4.20
145 146 1.372087 GGCGATGCAAAGTCAGGGAG 61.372 60.000 0.00 0.00 0.00 4.30
146 147 1.986575 GCGATGCAAAGTCAGGGAGC 61.987 60.000 0.00 0.00 0.00 4.70
147 148 0.392193 CGATGCAAAGTCAGGGAGCT 60.392 55.000 0.00 0.00 0.00 4.09
148 149 1.093159 GATGCAAAGTCAGGGAGCTG 58.907 55.000 0.00 0.00 0.00 4.24
149 150 0.403271 ATGCAAAGTCAGGGAGCTGT 59.597 50.000 0.00 0.00 0.00 4.40
150 151 1.055849 TGCAAAGTCAGGGAGCTGTA 58.944 50.000 0.00 0.00 0.00 2.74
151 152 1.002430 TGCAAAGTCAGGGAGCTGTAG 59.998 52.381 0.00 0.00 0.00 2.74
152 153 1.731720 CAAAGTCAGGGAGCTGTAGC 58.268 55.000 0.00 0.00 42.49 3.58
165 166 3.430333 GCTGTAGCTCTACCTGACTTC 57.570 52.381 0.00 0.00 38.21 3.01
166 167 2.100087 GCTGTAGCTCTACCTGACTTCC 59.900 54.545 0.00 0.00 38.21 3.46
167 168 2.691011 CTGTAGCTCTACCTGACTTCCC 59.309 54.545 0.00 0.00 35.26 3.97
168 169 2.312140 TGTAGCTCTACCTGACTTCCCT 59.688 50.000 0.00 0.00 35.26 4.20
169 170 2.632763 AGCTCTACCTGACTTCCCTT 57.367 50.000 0.00 0.00 0.00 3.95
170 171 2.183679 AGCTCTACCTGACTTCCCTTG 58.816 52.381 0.00 0.00 0.00 3.61
171 172 1.406205 GCTCTACCTGACTTCCCTTGC 60.406 57.143 0.00 0.00 0.00 4.01
172 173 1.902508 CTCTACCTGACTTCCCTTGCA 59.097 52.381 0.00 0.00 0.00 4.08
173 174 2.303022 CTCTACCTGACTTCCCTTGCAA 59.697 50.000 0.00 0.00 0.00 4.08
174 175 2.912956 TCTACCTGACTTCCCTTGCAAT 59.087 45.455 0.00 0.00 0.00 3.56
175 176 1.915141 ACCTGACTTCCCTTGCAATG 58.085 50.000 0.00 0.00 0.00 2.82
176 177 1.145738 ACCTGACTTCCCTTGCAATGT 59.854 47.619 0.00 0.00 0.00 2.71
177 178 1.815003 CCTGACTTCCCTTGCAATGTC 59.185 52.381 0.00 4.84 0.00 3.06
178 179 2.507484 CTGACTTCCCTTGCAATGTCA 58.493 47.619 0.00 8.99 34.04 3.58
179 180 2.486982 CTGACTTCCCTTGCAATGTCAG 59.513 50.000 20.87 20.87 43.11 3.51
180 181 2.106338 TGACTTCCCTTGCAATGTCAGA 59.894 45.455 0.00 0.00 31.87 3.27
181 182 2.746362 GACTTCCCTTGCAATGTCAGAG 59.254 50.000 0.00 0.00 0.00 3.35
182 183 2.089980 CTTCCCTTGCAATGTCAGAGG 58.910 52.381 0.00 0.00 0.00 3.69
183 184 1.361204 TCCCTTGCAATGTCAGAGGA 58.639 50.000 0.00 0.00 0.00 3.71
184 185 1.918262 TCCCTTGCAATGTCAGAGGAT 59.082 47.619 0.00 0.00 0.00 3.24
185 186 2.092753 TCCCTTGCAATGTCAGAGGATC 60.093 50.000 0.00 0.00 0.00 3.36
207 208 0.951040 GTTCCCTCGTGAGCTTGGTG 60.951 60.000 0.00 0.00 0.00 4.17
210 211 2.320587 CCTCGTGAGCTTGGTGTGC 61.321 63.158 0.00 0.00 0.00 4.57
212 213 1.563435 CTCGTGAGCTTGGTGTGCTG 61.563 60.000 0.00 0.00 41.30 4.41
220 221 1.474077 GCTTGGTGTGCTGGATTAAGG 59.526 52.381 0.00 0.00 0.00 2.69
225 226 4.415596 TGGTGTGCTGGATTAAGGAAAAT 58.584 39.130 0.00 0.00 0.00 1.82
230 231 5.721000 TGTGCTGGATTAAGGAAAATGGAAT 59.279 36.000 0.00 0.00 0.00 3.01
236 237 9.374838 CTGGATTAAGGAAAATGGAATGAAAAG 57.625 33.333 0.00 0.00 0.00 2.27
251 252 2.557924 TGAAAAGCCAAATGACAGCGAT 59.442 40.909 0.00 0.00 0.00 4.58
252 253 3.755905 TGAAAAGCCAAATGACAGCGATA 59.244 39.130 0.00 0.00 0.00 2.92
254 255 5.588246 TGAAAAGCCAAATGACAGCGATATA 59.412 36.000 0.00 0.00 0.00 0.86
279 280 5.978814 TCTCAGGTTAGTTTATCAGAAGGC 58.021 41.667 0.00 0.00 0.00 4.35
285 286 5.394993 GGTTAGTTTATCAGAAGGCGTAGGT 60.395 44.000 0.00 0.00 0.00 3.08
292 293 1.003718 GAAGGCGTAGGTTGGCAGT 60.004 57.895 0.00 0.00 0.00 4.40
294 295 0.688487 AAGGCGTAGGTTGGCAGTAA 59.312 50.000 0.00 0.00 0.00 2.24
296 297 1.072648 AGGCGTAGGTTGGCAGTAAAA 59.927 47.619 0.00 0.00 0.00 1.52
297 298 1.881324 GGCGTAGGTTGGCAGTAAAAA 59.119 47.619 0.00 0.00 0.00 1.94
299 300 2.667448 GCGTAGGTTGGCAGTAAAAAGC 60.667 50.000 0.00 0.00 0.00 3.51
324 325 3.515502 TGAGTGGAGGAGATGAAATTCGT 59.484 43.478 0.00 0.00 0.00 3.85
325 326 3.866651 AGTGGAGGAGATGAAATTCGTG 58.133 45.455 0.00 0.00 0.00 4.35
329 330 0.657840 GGAGATGAAATTCGTGCCGG 59.342 55.000 0.00 0.00 0.00 6.13
371 372 2.734276 GGATCGATCCTTCTAGCACC 57.266 55.000 32.91 6.93 43.73 5.01
375 376 1.676529 TCGATCCTTCTAGCACCTTCG 59.323 52.381 0.00 0.00 0.00 3.79
378 379 1.153349 CCTTCTAGCACCTTCGCCC 60.153 63.158 0.00 0.00 0.00 6.13
379 380 1.153349 CTTCTAGCACCTTCGCCCC 60.153 63.158 0.00 0.00 0.00 5.80
381 382 1.485294 TTCTAGCACCTTCGCCCCAA 61.485 55.000 0.00 0.00 0.00 4.12
382 383 1.002624 CTAGCACCTTCGCCCCAAA 60.003 57.895 0.00 0.00 0.00 3.28
383 384 1.002624 TAGCACCTTCGCCCCAAAG 60.003 57.895 0.00 0.00 0.00 2.77
384 385 1.774894 TAGCACCTTCGCCCCAAAGT 61.775 55.000 0.00 0.00 0.00 2.66
385 386 2.919494 GCACCTTCGCCCCAAAGTG 61.919 63.158 0.00 0.00 0.00 3.16
387 388 2.115266 CCTTCGCCCCAAAGTGGT 59.885 61.111 0.00 0.00 35.17 4.16
388 389 2.268076 CCTTCGCCCCAAAGTGGTG 61.268 63.158 0.00 0.00 35.17 4.17
389 390 1.528309 CTTCGCCCCAAAGTGGTGT 60.528 57.895 0.00 0.00 35.17 4.16
390 391 1.795170 CTTCGCCCCAAAGTGGTGTG 61.795 60.000 0.00 0.00 35.17 3.82
391 392 2.518349 CGCCCCAAAGTGGTGTGT 60.518 61.111 0.00 0.00 35.17 3.72
392 393 1.228003 CGCCCCAAAGTGGTGTGTA 60.228 57.895 0.00 0.00 35.17 2.90
393 394 1.512156 CGCCCCAAAGTGGTGTGTAC 61.512 60.000 0.00 0.00 35.17 2.90
394 395 0.466555 GCCCCAAAGTGGTGTGTACA 60.467 55.000 0.00 0.00 35.17 2.90
395 396 2.024825 GCCCCAAAGTGGTGTGTACAA 61.025 52.381 0.00 0.00 35.17 2.41
396 397 1.679153 CCCCAAAGTGGTGTGTACAAC 59.321 52.381 0.00 0.00 35.17 3.32
402 403 6.370655 CCAAAGTGGTGTGTACAACTGTACA 61.371 44.000 16.79 16.79 40.24 2.90
403 404 7.625401 CCAAAGTGGTGTGTACAACTGTACAT 61.625 42.308 22.01 5.98 45.79 2.29
434 435 2.800746 GAATTGGCACGTGCACGC 60.801 61.111 38.60 23.55 44.43 5.34
445 446 1.071019 CGTGCACGCAGAATAGTCGT 61.071 55.000 28.16 0.00 36.84 4.34
474 475 1.898574 CGCACCTGGCTTTCACCTT 60.899 57.895 0.00 0.00 41.67 3.50
480 481 0.111253 CTGGCTTTCACCTTCACCCT 59.889 55.000 0.00 0.00 0.00 4.34
521 522 1.456892 AGACCACAGTGACCGACCA 60.457 57.895 0.62 0.00 0.00 4.02
595 597 2.189342 GCTCGTTGCAGAGACACTATC 58.811 52.381 7.13 0.00 40.57 2.08
613 615 2.988010 TCACTCACTTGCTGACTTGT 57.012 45.000 0.00 0.00 0.00 3.16
616 618 0.234106 CTCACTTGCTGACTTGTGCG 59.766 55.000 0.00 0.00 0.00 5.34
617 619 0.461870 TCACTTGCTGACTTGTGCGT 60.462 50.000 0.00 0.00 0.00 5.24
647 649 4.192429 GGATGGTGGTTTCCATTCTTTG 57.808 45.455 0.00 0.00 46.72 2.77
653 655 2.235891 GGTTTCCATTCTTTGGTCCGT 58.764 47.619 0.00 0.00 46.52 4.69
660 662 0.688487 TTCTTTGGTCCGTACAGGGG 59.312 55.000 0.00 0.00 41.52 4.79
661 663 1.376812 CTTTGGTCCGTACAGGGGC 60.377 63.158 0.00 0.00 41.52 5.80
665 667 3.001406 GTCCGTACAGGGGCCAGT 61.001 66.667 4.39 5.91 41.52 4.00
666 668 1.683365 GTCCGTACAGGGGCCAGTA 60.683 63.158 4.39 4.74 41.52 2.74
668 670 0.325860 TCCGTACAGGGGCCAGTATT 60.326 55.000 4.39 0.00 41.52 1.89
669 671 0.179056 CCGTACAGGGGCCAGTATTG 60.179 60.000 4.39 4.93 35.97 1.90
670 672 0.539986 CGTACAGGGGCCAGTATTGT 59.460 55.000 4.39 3.52 0.00 2.71
674 778 3.081710 ACAGGGGCCAGTATTGTTTAC 57.918 47.619 4.39 0.00 0.00 2.01
682 786 6.946009 GGGGCCAGTATTGTTTACATGTATAT 59.054 38.462 6.36 1.59 0.00 0.86
697 801 7.681939 ACATGTATATTTCTCCAAAACACGT 57.318 32.000 0.00 0.00 0.00 4.49
701 805 8.428186 TGTATATTTCTCCAAAACACGTATCC 57.572 34.615 0.00 0.00 0.00 2.59
711 815 7.332557 TCCAAAACACGTATCCTATTGTGTAT 58.667 34.615 0.00 0.00 44.23 2.29
713 817 9.268268 CCAAAACACGTATCCTATTGTGTATAT 57.732 33.333 0.00 0.00 44.23 0.86
715 819 9.826574 AAAACACGTATCCTATTGTGTATATGT 57.173 29.630 0.00 0.00 44.23 2.29
791 3848 4.510340 GGATGGACATGGACGTATACAAAC 59.490 45.833 3.32 0.00 0.00 2.93
811 3868 7.097834 ACAAACTAGTTTAGTCTAGTGATGCC 58.902 38.462 20.15 0.00 46.49 4.40
828 3885 2.582498 CGTAGCACCGGCACTAGC 60.582 66.667 0.00 0.00 44.61 3.42
831 3888 1.982395 TAGCACCGGCACTAGCAGT 60.982 57.895 0.00 0.00 44.61 4.40
832 3889 0.681887 TAGCACCGGCACTAGCAGTA 60.682 55.000 0.00 0.00 44.61 2.74
833 3890 1.519455 GCACCGGCACTAGCAGTAG 60.519 63.158 0.00 0.00 44.61 2.57
834 3891 1.519455 CACCGGCACTAGCAGTAGC 60.519 63.158 0.00 0.00 44.61 3.58
835 3892 1.982395 ACCGGCACTAGCAGTAGCA 60.982 57.895 0.00 0.00 45.49 3.49
836 3893 1.227089 CCGGCACTAGCAGTAGCAG 60.227 63.158 0.00 0.00 45.49 4.24
894 3952 1.201880 GACTACCGTTGACTCACTCCC 59.798 57.143 0.00 0.00 0.00 4.30
896 3954 1.202582 CTACCGTTGACTCACTCCCTG 59.797 57.143 0.00 0.00 0.00 4.45
916 3980 1.738099 GCGGCGGCTATAGATGTGG 60.738 63.158 9.78 0.00 35.83 4.17
945 4009 1.951130 CACCGCTCGATCCCATTCG 60.951 63.158 0.00 0.00 40.46 3.34
947 4011 1.661821 CCGCTCGATCCCATTCGTC 60.662 63.158 0.00 0.00 40.03 4.20
948 4012 1.661821 CGCTCGATCCCATTCGTCC 60.662 63.158 0.00 0.00 40.03 4.79
959 4023 1.138859 CCATTCGTCCATCCACAGCTA 59.861 52.381 0.00 0.00 0.00 3.32
973 4037 0.534412 CAGCTAGACCACCTGACAGG 59.466 60.000 20.45 20.45 42.49 4.00
985 4049 4.394712 GACAGGTGGACGCAGGGG 62.395 72.222 0.00 0.00 0.00 4.79
1083 4167 0.756070 GGAGGAGAAGGGACCCTACG 60.756 65.000 15.29 0.00 31.13 3.51
1253 4337 4.681978 GGGGCGTCGTGCTGAAGT 62.682 66.667 0.00 0.00 45.43 3.01
1270 4378 2.853235 AGTTGGTACTGGCAGTAACC 57.147 50.000 33.42 29.28 37.60 2.85
1271 4379 1.350019 AGTTGGTACTGGCAGTAACCC 59.650 52.381 33.42 27.14 37.60 4.11
1272 4380 0.694196 TTGGTACTGGCAGTAACCCC 59.306 55.000 33.42 26.52 37.60 4.95
1278 4386 1.827399 CTGGCAGTAACCCCACGACT 61.827 60.000 6.28 0.00 0.00 4.18
1293 4401 1.129998 ACGACTACAACGACGATGAGG 59.870 52.381 12.41 6.37 34.70 3.86
1317 4425 2.048603 GTTGGAGGAGTGCATGGCC 61.049 63.158 0.00 0.00 0.00 5.36
1398 4506 9.959749 GAGTTACACATAAATTTTCTGTTTCCA 57.040 29.630 0.00 0.00 0.00 3.53
1441 4551 6.420604 CGGTTAAAAACAGACGGTTAACTAGA 59.579 38.462 5.42 0.00 39.29 2.43
1479 4589 1.405526 CCGACCTCAATCGTCACCAAT 60.406 52.381 0.00 0.00 40.59 3.16
1480 4590 1.660607 CGACCTCAATCGTCACCAATG 59.339 52.381 0.00 0.00 37.33 2.82
1482 4592 3.074412 GACCTCAATCGTCACCAATGTT 58.926 45.455 0.00 0.00 0.00 2.71
1511 4621 4.104579 TGATGGACATGCATACACCCTTAT 59.895 41.667 0.00 0.00 0.00 1.73
1512 4622 3.819368 TGGACATGCATACACCCTTATG 58.181 45.455 0.00 0.00 33.25 1.90
1520 4631 3.329386 CATACACCCTTATGCGATGGAG 58.671 50.000 0.00 0.00 0.00 3.86
1525 4636 3.065371 CACCCTTATGCGATGGAGAAAAC 59.935 47.826 0.00 0.00 0.00 2.43
1534 4645 3.424962 GCGATGGAGAAAACCGAAAGAAG 60.425 47.826 0.00 0.00 0.00 2.85
1550 4661 7.982354 ACCGAAAGAAGTAGATATTGGAGAAAG 59.018 37.037 0.00 0.00 0.00 2.62
1595 4706 0.744414 CCTGGCATGGTACGGTGAAG 60.744 60.000 0.00 0.00 0.00 3.02
1689 4800 4.905429 TCATGCAAAGCTCCTACAGTTAA 58.095 39.130 0.00 0.00 0.00 2.01
1690 4801 5.312895 TCATGCAAAGCTCCTACAGTTAAA 58.687 37.500 0.00 0.00 0.00 1.52
1691 4802 5.181245 TCATGCAAAGCTCCTACAGTTAAAC 59.819 40.000 0.00 0.00 0.00 2.01
1692 4803 4.456535 TGCAAAGCTCCTACAGTTAAACA 58.543 39.130 0.00 0.00 0.00 2.83
1693 4804 5.070001 TGCAAAGCTCCTACAGTTAAACAT 58.930 37.500 0.00 0.00 0.00 2.71
1694 4805 5.534654 TGCAAAGCTCCTACAGTTAAACATT 59.465 36.000 0.00 0.00 0.00 2.71
1695 4806 5.858581 GCAAAGCTCCTACAGTTAAACATTG 59.141 40.000 0.00 0.00 0.00 2.82
1696 4807 6.293955 GCAAAGCTCCTACAGTTAAACATTGA 60.294 38.462 0.00 0.00 0.00 2.57
1697 4808 7.648142 CAAAGCTCCTACAGTTAAACATTGAA 58.352 34.615 0.00 0.00 0.00 2.69
1698 4809 8.299570 CAAAGCTCCTACAGTTAAACATTGAAT 58.700 33.333 0.00 0.00 0.00 2.57
1699 4810 8.409358 AAGCTCCTACAGTTAAACATTGAATT 57.591 30.769 0.00 0.00 0.00 2.17
1700 4811 9.515226 AAGCTCCTACAGTTAAACATTGAATTA 57.485 29.630 0.00 0.00 0.00 1.40
1701 4812 9.686683 AGCTCCTACAGTTAAACATTGAATTAT 57.313 29.630 0.00 0.00 0.00 1.28
1729 4840 9.136323 ACTCCATCTAATCCAAATTAATTGTCC 57.864 33.333 0.39 0.00 37.32 4.02
1730 4841 9.359653 CTCCATCTAATCCAAATTAATTGTCCT 57.640 33.333 0.39 0.00 37.32 3.85
1731 4842 9.713684 TCCATCTAATCCAAATTAATTGTCCTT 57.286 29.630 0.39 0.00 37.32 3.36
1732 4843 9.754382 CCATCTAATCCAAATTAATTGTCCTTG 57.246 33.333 0.39 0.00 37.32 3.61
1749 4860 8.974060 TTGTCCTTGTTCTATTCTAAAGTTGT 57.026 30.769 0.00 0.00 0.00 3.32
1751 4862 9.485206 TGTCCTTGTTCTATTCTAAAGTTGTAC 57.515 33.333 0.00 0.00 0.00 2.90
1764 4875 8.511465 TCTAAAGTTGTACTACTAAAACAGCG 57.489 34.615 10.43 0.00 30.66 5.18
1768 4879 6.275335 AGTTGTACTACTAAAACAGCGACAA 58.725 36.000 8.27 0.00 30.66 3.18
1769 4880 6.757947 AGTTGTACTACTAAAACAGCGACAAA 59.242 34.615 8.27 0.00 30.66 2.83
1781 4892 5.248870 ACAGCGACAAATAATTTGGATCC 57.751 39.130 4.20 4.20 44.81 3.36
1782 4893 4.201910 ACAGCGACAAATAATTTGGATCCG 60.202 41.667 7.39 0.00 44.81 4.18
1848 4959 7.502226 AGCTAGCAGCATTAACATATGGTAAAA 59.498 33.333 16.89 0.00 45.56 1.52
1855 4966 9.169592 AGCATTAACATATGGTAAAAAGTACGT 57.830 29.630 16.89 0.00 34.68 3.57
1887 5000 9.394477 GTAAAGGTCAAATTAACTTTAGTGCTG 57.606 33.333 0.00 0.00 36.44 4.41
1939 5052 7.457024 AGGTACCACGTGCTTATTTAAAAAT 57.543 32.000 15.94 0.00 0.00 1.82
1940 5053 8.564509 AGGTACCACGTGCTTATTTAAAAATA 57.435 30.769 15.94 0.00 0.00 1.40
1964 5077 7.540474 AATCATGTGTAGGTTCCGTAGATAT 57.460 36.000 0.00 0.00 0.00 1.63
1965 5078 8.645814 AATCATGTGTAGGTTCCGTAGATATA 57.354 34.615 0.00 0.00 0.00 0.86
1975 5088 8.572855 AGGTTCCGTAGATATACTTATACCAC 57.427 38.462 0.00 0.00 0.00 4.16
1984 5097 4.976540 ATACTTATACCACAAGAGCCCC 57.023 45.455 0.00 0.00 0.00 5.80
1992 5105 1.529244 ACAAGAGCCCCTGTGTTGC 60.529 57.895 0.00 0.00 0.00 4.17
2002 5115 1.227823 CTGTGTTGCAACGGGAGGA 60.228 57.895 23.79 2.89 0.00 3.71
2003 5116 0.817634 CTGTGTTGCAACGGGAGGAA 60.818 55.000 23.79 2.11 0.00 3.36
2004 5117 0.394488 TGTGTTGCAACGGGAGGAAA 60.394 50.000 23.79 1.33 0.00 3.13
2032 5145 4.589908 ACCACAAACTCTTAGCCCAATAG 58.410 43.478 0.00 0.00 0.00 1.73
2037 5150 6.375455 CACAAACTCTTAGCCCAATAGTCATT 59.625 38.462 0.00 0.00 0.00 2.57
2041 5154 6.821388 ACTCTTAGCCCAATAGTCATTACTG 58.179 40.000 0.00 0.00 36.36 2.74
2046 5159 5.675538 AGCCCAATAGTCATTACTGAAGAC 58.324 41.667 0.00 0.00 36.36 3.01
2064 5177 0.549469 ACCCCAAAGTCCACGTTCTT 59.451 50.000 0.00 0.00 0.00 2.52
2074 5187 6.687081 AAGTCCACGTTCTTTATTTCAACA 57.313 33.333 0.00 0.00 0.00 3.33
2082 5195 8.177663 CACGTTCTTTATTTCAACATAGCATCT 58.822 33.333 0.00 0.00 0.00 2.90
2083 5196 8.391106 ACGTTCTTTATTTCAACATAGCATCTC 58.609 33.333 0.00 0.00 0.00 2.75
2121 5234 1.690219 CCTCCTTCCCACCCTCATCG 61.690 65.000 0.00 0.00 0.00 3.84
2124 5237 1.264749 CCTTCCCACCCTCATCGACA 61.265 60.000 0.00 0.00 0.00 4.35
2133 5246 1.177401 CCTCATCGACAGTGTCCTCA 58.823 55.000 17.57 2.27 0.00 3.86
2134 5247 1.546029 CCTCATCGACAGTGTCCTCAA 59.454 52.381 17.57 1.50 0.00 3.02
2138 5251 0.037326 TCGACAGTGTCCTCAATGCC 60.037 55.000 17.57 0.00 42.43 4.40
2166 5279 6.911756 GCAATTACAATGCGTTAGAATGTTC 58.088 36.000 0.00 0.00 33.57 3.18
2179 5292 7.439655 GCGTTAGAATGTTCTCAATCCTAAGAT 59.560 37.037 0.00 0.00 38.70 2.40
2188 5301 4.651503 TCTCAATCCTAAGATGTCACTCCC 59.348 45.833 0.00 0.00 31.29 4.30
2209 5322 3.553511 CCTGTCGACATAAGATGAGCAAC 59.446 47.826 20.40 0.00 0.00 4.17
2212 5325 4.401202 TGTCGACATAAGATGAGCAACCTA 59.599 41.667 15.76 0.00 0.00 3.08
2214 5327 4.401202 TCGACATAAGATGAGCAACCTACA 59.599 41.667 0.00 0.00 0.00 2.74
2228 5341 5.888161 AGCAACCTACATTTTATTCTCCCTG 59.112 40.000 0.00 0.00 0.00 4.45
2245 5358 2.028567 CCCTGTGAGGTTTCTCTGAGAC 60.029 54.545 6.92 0.00 40.58 3.36
2263 5376 2.800544 AGACGTGCATGGCGTAATTATC 59.199 45.455 11.36 0.00 43.04 1.75
2277 5390 6.588756 GGCGTAATTATCGATGGTATCTTTCA 59.411 38.462 8.54 0.00 0.00 2.69
2321 5434 6.828273 TGAGATGTTCATTTGTAATCCGGATT 59.172 34.615 31.30 31.30 34.93 3.01
2326 5439 8.287439 TGTTCATTTGTAATCCGGATTAACAT 57.713 30.769 33.15 22.63 35.30 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.365514 TGCCTCCATTTTTCTACACAGA 57.634 40.909 0.00 0.00 0.00 3.41
1 2 4.520492 ACTTGCCTCCATTTTTCTACACAG 59.480 41.667 0.00 0.00 0.00 3.66
3 4 4.518970 TGACTTGCCTCCATTTTTCTACAC 59.481 41.667 0.00 0.00 0.00 2.90
4 5 4.724399 TGACTTGCCTCCATTTTTCTACA 58.276 39.130 0.00 0.00 0.00 2.74
5 6 5.003804 TCTGACTTGCCTCCATTTTTCTAC 58.996 41.667 0.00 0.00 0.00 2.59
6 7 5.013079 TCTCTGACTTGCCTCCATTTTTCTA 59.987 40.000 0.00 0.00 0.00 2.10
7 8 4.077822 CTCTGACTTGCCTCCATTTTTCT 58.922 43.478 0.00 0.00 0.00 2.52
8 9 4.074970 TCTCTGACTTGCCTCCATTTTTC 58.925 43.478 0.00 0.00 0.00 2.29
9 10 4.077822 CTCTCTGACTTGCCTCCATTTTT 58.922 43.478 0.00 0.00 0.00 1.94
10 11 3.328931 TCTCTCTGACTTGCCTCCATTTT 59.671 43.478 0.00 0.00 0.00 1.82
11 12 2.909006 TCTCTCTGACTTGCCTCCATTT 59.091 45.455 0.00 0.00 0.00 2.32
12 13 2.544721 TCTCTCTGACTTGCCTCCATT 58.455 47.619 0.00 0.00 0.00 3.16
13 14 2.244486 TCTCTCTGACTTGCCTCCAT 57.756 50.000 0.00 0.00 0.00 3.41
14 15 2.244486 ATCTCTCTGACTTGCCTCCA 57.756 50.000 0.00 0.00 0.00 3.86
15 16 4.953940 ATAATCTCTCTGACTTGCCTCC 57.046 45.455 0.00 0.00 0.00 4.30
16 17 5.911752 TCAATAATCTCTCTGACTTGCCTC 58.088 41.667 0.00 0.00 0.00 4.70
17 18 5.163322 CCTCAATAATCTCTCTGACTTGCCT 60.163 44.000 0.00 0.00 0.00 4.75
18 19 5.055812 CCTCAATAATCTCTCTGACTTGCC 58.944 45.833 0.00 0.00 0.00 4.52
19 20 4.511082 GCCTCAATAATCTCTCTGACTTGC 59.489 45.833 0.00 0.00 0.00 4.01
20 21 5.523188 GTGCCTCAATAATCTCTCTGACTTG 59.477 44.000 0.00 0.00 0.00 3.16
21 22 5.424895 AGTGCCTCAATAATCTCTCTGACTT 59.575 40.000 0.00 0.00 0.00 3.01
22 23 4.961730 AGTGCCTCAATAATCTCTCTGACT 59.038 41.667 0.00 0.00 0.00 3.41
23 24 5.049167 CAGTGCCTCAATAATCTCTCTGAC 58.951 45.833 0.00 0.00 0.00 3.51
24 25 4.713814 ACAGTGCCTCAATAATCTCTCTGA 59.286 41.667 0.00 0.00 0.00 3.27
25 26 5.021033 ACAGTGCCTCAATAATCTCTCTG 57.979 43.478 0.00 0.00 0.00 3.35
26 27 5.658634 TGTACAGTGCCTCAATAATCTCTCT 59.341 40.000 0.00 0.00 0.00 3.10
27 28 5.907207 TGTACAGTGCCTCAATAATCTCTC 58.093 41.667 0.00 0.00 0.00 3.20
28 29 5.939764 TGTACAGTGCCTCAATAATCTCT 57.060 39.130 0.00 0.00 0.00 3.10
29 30 7.437748 AGTATGTACAGTGCCTCAATAATCTC 58.562 38.462 0.33 0.00 0.00 2.75
30 31 7.366847 AGTATGTACAGTGCCTCAATAATCT 57.633 36.000 0.33 0.00 0.00 2.40
31 32 8.141909 TGTAGTATGTACAGTGCCTCAATAATC 58.858 37.037 0.33 0.00 0.00 1.75
32 33 8.018537 TGTAGTATGTACAGTGCCTCAATAAT 57.981 34.615 0.33 0.00 0.00 1.28
33 34 7.412853 TGTAGTATGTACAGTGCCTCAATAA 57.587 36.000 0.33 0.00 0.00 1.40
34 35 7.597288 ATGTAGTATGTACAGTGCCTCAATA 57.403 36.000 0.33 0.00 0.00 1.90
35 36 5.932619 TGTAGTATGTACAGTGCCTCAAT 57.067 39.130 0.33 0.00 0.00 2.57
36 37 5.932619 ATGTAGTATGTACAGTGCCTCAA 57.067 39.130 0.33 0.00 0.00 3.02
37 38 5.186992 ACAATGTAGTATGTACAGTGCCTCA 59.813 40.000 14.10 0.00 44.40 3.86
38 39 5.661458 ACAATGTAGTATGTACAGTGCCTC 58.339 41.667 14.10 0.00 44.40 4.70
39 40 5.677319 ACAATGTAGTATGTACAGTGCCT 57.323 39.130 14.10 0.00 44.40 4.75
40 41 6.802608 TCTACAATGTAGTATGTACAGTGCC 58.197 40.000 18.71 0.00 44.40 5.01
41 42 8.135529 TCATCTACAATGTAGTATGTACAGTGC 58.864 37.037 18.71 0.00 44.40 4.40
51 52 8.565416 CCGACAGTAATCATCTACAATGTAGTA 58.435 37.037 18.71 7.50 0.00 1.82
52 53 7.068348 ACCGACAGTAATCATCTACAATGTAGT 59.932 37.037 18.71 5.21 0.00 2.73
53 54 7.426410 ACCGACAGTAATCATCTACAATGTAG 58.574 38.462 13.92 13.92 0.00 2.74
54 55 7.342769 ACCGACAGTAATCATCTACAATGTA 57.657 36.000 0.00 0.00 0.00 2.29
55 56 6.222038 ACCGACAGTAATCATCTACAATGT 57.778 37.500 0.00 0.00 0.00 2.71
56 57 8.818141 ATTACCGACAGTAATCATCTACAATG 57.182 34.615 0.00 0.00 46.65 2.82
69 70 9.840427 GTTTAACTACAGTAATTACCGACAGTA 57.160 33.333 12.05 7.03 0.00 2.74
70 71 8.359642 TGTTTAACTACAGTAATTACCGACAGT 58.640 33.333 12.05 8.15 0.00 3.55
71 72 8.746922 TGTTTAACTACAGTAATTACCGACAG 57.253 34.615 12.05 7.59 0.00 3.51
72 73 9.709495 AATGTTTAACTACAGTAATTACCGACA 57.291 29.630 12.05 1.52 0.00 4.35
73 74 9.962759 CAATGTTTAACTACAGTAATTACCGAC 57.037 33.333 12.05 0.00 0.00 4.79
74 75 9.709495 ACAATGTTTAACTACAGTAATTACCGA 57.291 29.630 12.05 0.00 0.00 4.69
98 99 4.217334 CCACACTATTTGCATGTTGGTACA 59.783 41.667 0.00 0.00 38.95 2.90
99 100 4.732784 CCACACTATTTGCATGTTGGTAC 58.267 43.478 0.00 0.00 0.00 3.34
100 101 3.192422 GCCACACTATTTGCATGTTGGTA 59.808 43.478 0.00 0.00 0.00 3.25
101 102 2.029110 GCCACACTATTTGCATGTTGGT 60.029 45.455 0.00 0.00 0.00 3.67
102 103 2.231964 AGCCACACTATTTGCATGTTGG 59.768 45.455 0.00 0.00 0.00 3.77
103 104 3.247442 CAGCCACACTATTTGCATGTTG 58.753 45.455 0.00 0.00 0.00 3.33
104 105 2.892852 ACAGCCACACTATTTGCATGTT 59.107 40.909 0.00 0.00 0.00 2.71
105 106 2.229543 CACAGCCACACTATTTGCATGT 59.770 45.455 0.00 0.00 0.00 3.21
106 107 2.416296 CCACAGCCACACTATTTGCATG 60.416 50.000 0.00 0.00 0.00 4.06
107 108 1.820519 CCACAGCCACACTATTTGCAT 59.179 47.619 0.00 0.00 0.00 3.96
108 109 1.246649 CCACAGCCACACTATTTGCA 58.753 50.000 0.00 0.00 0.00 4.08
109 110 0.109132 GCCACAGCCACACTATTTGC 60.109 55.000 0.00 0.00 0.00 3.68
110 111 0.168788 CGCCACAGCCACACTATTTG 59.831 55.000 0.00 0.00 34.57 2.32
111 112 0.036164 TCGCCACAGCCACACTATTT 59.964 50.000 0.00 0.00 34.57 1.40
112 113 0.253044 ATCGCCACAGCCACACTATT 59.747 50.000 0.00 0.00 34.57 1.73
113 114 0.462581 CATCGCCACAGCCACACTAT 60.463 55.000 0.00 0.00 34.57 2.12
114 115 1.079197 CATCGCCACAGCCACACTA 60.079 57.895 0.00 0.00 34.57 2.74
115 116 2.359107 CATCGCCACAGCCACACT 60.359 61.111 0.00 0.00 34.57 3.55
116 117 4.107051 GCATCGCCACAGCCACAC 62.107 66.667 0.00 0.00 34.57 3.82
117 118 4.639906 TGCATCGCCACAGCCACA 62.640 61.111 0.00 0.00 34.57 4.17
118 119 2.807631 CTTTGCATCGCCACAGCCAC 62.808 60.000 0.00 0.00 34.57 5.01
119 120 2.596923 TTTGCATCGCCACAGCCA 60.597 55.556 0.00 0.00 34.57 4.75
120 121 2.180017 CTTTGCATCGCCACAGCC 59.820 61.111 0.00 0.00 34.57 4.85
121 122 1.154150 GACTTTGCATCGCCACAGC 60.154 57.895 0.00 0.00 0.00 4.40
122 123 0.167470 CTGACTTTGCATCGCCACAG 59.833 55.000 0.00 0.00 0.00 3.66
123 124 1.236616 CCTGACTTTGCATCGCCACA 61.237 55.000 0.00 0.00 0.00 4.17
124 125 1.503542 CCTGACTTTGCATCGCCAC 59.496 57.895 0.00 0.00 0.00 5.01
125 126 1.675310 CCCTGACTTTGCATCGCCA 60.675 57.895 0.00 0.00 0.00 5.69
126 127 1.372087 CTCCCTGACTTTGCATCGCC 61.372 60.000 0.00 0.00 0.00 5.54
127 128 1.986575 GCTCCCTGACTTTGCATCGC 61.987 60.000 0.00 0.00 0.00 4.58
128 129 0.392193 AGCTCCCTGACTTTGCATCG 60.392 55.000 0.00 0.00 0.00 3.84
129 130 1.093159 CAGCTCCCTGACTTTGCATC 58.907 55.000 0.00 0.00 41.77 3.91
130 131 0.403271 ACAGCTCCCTGACTTTGCAT 59.597 50.000 0.00 0.00 41.77 3.96
131 132 1.002430 CTACAGCTCCCTGACTTTGCA 59.998 52.381 0.00 0.00 41.77 4.08
132 133 1.731720 CTACAGCTCCCTGACTTTGC 58.268 55.000 0.00 0.00 41.77 3.68
133 134 1.731720 GCTACAGCTCCCTGACTTTG 58.268 55.000 0.00 0.00 41.77 2.77
145 146 2.100087 GGAAGTCAGGTAGAGCTACAGC 59.900 54.545 9.62 0.00 37.78 4.40
146 147 2.691011 GGGAAGTCAGGTAGAGCTACAG 59.309 54.545 9.62 2.30 37.78 2.74
147 148 2.312140 AGGGAAGTCAGGTAGAGCTACA 59.688 50.000 9.62 0.00 37.78 2.74
148 149 3.021177 AGGGAAGTCAGGTAGAGCTAC 57.979 52.381 0.00 0.00 35.40 3.58
149 150 3.366396 CAAGGGAAGTCAGGTAGAGCTA 58.634 50.000 0.00 0.00 0.00 3.32
150 151 2.183679 CAAGGGAAGTCAGGTAGAGCT 58.816 52.381 0.00 0.00 0.00 4.09
151 152 1.406205 GCAAGGGAAGTCAGGTAGAGC 60.406 57.143 0.00 0.00 0.00 4.09
152 153 1.902508 TGCAAGGGAAGTCAGGTAGAG 59.097 52.381 0.00 0.00 0.00 2.43
153 154 2.024176 TGCAAGGGAAGTCAGGTAGA 57.976 50.000 0.00 0.00 0.00 2.59
154 155 2.859165 TTGCAAGGGAAGTCAGGTAG 57.141 50.000 0.00 0.00 0.00 3.18
155 156 2.375174 ACATTGCAAGGGAAGTCAGGTA 59.625 45.455 16.45 0.00 0.00 3.08
156 157 1.145738 ACATTGCAAGGGAAGTCAGGT 59.854 47.619 16.45 0.00 0.00 4.00
157 158 1.815003 GACATTGCAAGGGAAGTCAGG 59.185 52.381 16.45 0.00 0.00 3.86
158 159 2.486982 CTGACATTGCAAGGGAAGTCAG 59.513 50.000 22.52 22.52 44.48 3.51
159 160 2.106338 TCTGACATTGCAAGGGAAGTCA 59.894 45.455 16.45 15.98 35.07 3.41
160 161 2.746362 CTCTGACATTGCAAGGGAAGTC 59.254 50.000 16.45 12.61 0.00 3.01
161 162 2.553904 CCTCTGACATTGCAAGGGAAGT 60.554 50.000 16.45 3.64 0.00 3.01
162 163 2.089980 CCTCTGACATTGCAAGGGAAG 58.910 52.381 16.45 11.96 0.00 3.46
163 164 1.704628 TCCTCTGACATTGCAAGGGAA 59.295 47.619 16.45 1.89 0.00 3.97
164 165 1.361204 TCCTCTGACATTGCAAGGGA 58.639 50.000 16.45 2.24 0.00 4.20
165 166 2.092538 AGATCCTCTGACATTGCAAGGG 60.093 50.000 16.45 7.69 0.00 3.95
166 167 3.204526 GAGATCCTCTGACATTGCAAGG 58.795 50.000 10.01 10.01 0.00 3.61
167 168 2.864946 CGAGATCCTCTGACATTGCAAG 59.135 50.000 4.94 0.00 0.00 4.01
168 169 2.234661 ACGAGATCCTCTGACATTGCAA 59.765 45.455 0.00 0.00 0.00 4.08
169 170 1.827344 ACGAGATCCTCTGACATTGCA 59.173 47.619 0.00 0.00 0.00 4.08
170 171 2.593346 ACGAGATCCTCTGACATTGC 57.407 50.000 0.00 0.00 0.00 3.56
171 172 3.452474 GGAACGAGATCCTCTGACATTG 58.548 50.000 0.00 0.00 36.50 2.82
172 173 2.432510 GGGAACGAGATCCTCTGACATT 59.567 50.000 0.00 0.00 39.57 2.71
173 174 2.035632 GGGAACGAGATCCTCTGACAT 58.964 52.381 0.00 0.00 39.57 3.06
174 175 1.006043 AGGGAACGAGATCCTCTGACA 59.994 52.381 0.00 0.00 39.57 3.58
175 176 1.679153 GAGGGAACGAGATCCTCTGAC 59.321 57.143 0.00 0.00 42.70 3.51
176 177 1.747552 CGAGGGAACGAGATCCTCTGA 60.748 57.143 13.55 0.00 43.54 3.27
177 178 0.665835 CGAGGGAACGAGATCCTCTG 59.334 60.000 13.55 6.73 43.54 3.35
178 179 0.256464 ACGAGGGAACGAGATCCTCT 59.744 55.000 13.55 7.09 43.54 3.69
179 180 0.382515 CACGAGGGAACGAGATCCTC 59.617 60.000 0.00 0.00 42.60 3.71
180 181 0.034380 TCACGAGGGAACGAGATCCT 60.034 55.000 0.00 0.00 39.57 3.24
181 182 0.382515 CTCACGAGGGAACGAGATCC 59.617 60.000 0.00 0.00 38.86 3.36
182 183 0.248702 GCTCACGAGGGAACGAGATC 60.249 60.000 0.00 0.00 33.28 2.75
183 184 0.681564 AGCTCACGAGGGAACGAGAT 60.682 55.000 0.00 0.00 33.28 2.75
184 185 0.894184 AAGCTCACGAGGGAACGAGA 60.894 55.000 0.00 0.00 37.03 4.04
185 186 0.734253 CAAGCTCACGAGGGAACGAG 60.734 60.000 0.00 0.00 37.03 4.18
186 187 1.289066 CAAGCTCACGAGGGAACGA 59.711 57.895 0.00 0.00 37.03 3.85
187 188 1.738099 CCAAGCTCACGAGGGAACG 60.738 63.158 0.00 0.00 39.31 3.95
188 189 0.951040 CACCAAGCTCACGAGGGAAC 60.951 60.000 0.00 0.00 0.00 3.62
189 190 1.371183 CACCAAGCTCACGAGGGAA 59.629 57.895 0.00 0.00 0.00 3.97
190 191 1.837051 ACACCAAGCTCACGAGGGA 60.837 57.895 0.00 0.00 0.00 4.20
191 192 1.669115 CACACCAAGCTCACGAGGG 60.669 63.158 0.00 0.00 0.00 4.30
192 193 2.320587 GCACACCAAGCTCACGAGG 61.321 63.158 0.00 0.00 0.00 4.63
207 208 5.659440 TTCCATTTTCCTTAATCCAGCAC 57.341 39.130 0.00 0.00 0.00 4.40
210 211 9.374838 CTTTTCATTCCATTTTCCTTAATCCAG 57.625 33.333 0.00 0.00 0.00 3.86
212 213 7.280876 GGCTTTTCATTCCATTTTCCTTAATCC 59.719 37.037 0.00 0.00 0.00 3.01
220 221 7.041235 TGTCATTTGGCTTTTCATTCCATTTTC 60.041 33.333 0.00 0.00 0.00 2.29
225 226 4.800249 GCTGTCATTTGGCTTTTCATTCCA 60.800 41.667 0.00 0.00 0.00 3.53
230 231 1.952990 TCGCTGTCATTTGGCTTTTCA 59.047 42.857 0.00 0.00 0.00 2.69
236 237 5.409520 TGAGAATATATCGCTGTCATTTGGC 59.590 40.000 0.00 0.00 0.00 4.52
254 255 7.051000 GCCTTCTGATAAACTAACCTGAGAAT 58.949 38.462 0.00 0.00 0.00 2.40
279 280 2.812011 AGCTTTTTACTGCCAACCTACG 59.188 45.455 0.00 0.00 0.00 3.51
285 286 3.565482 CACTCAGAGCTTTTTACTGCCAA 59.435 43.478 0.00 0.00 0.00 4.52
292 293 4.160329 TCTCCTCCACTCAGAGCTTTTTA 58.840 43.478 0.00 0.00 32.17 1.52
294 295 2.614259 TCTCCTCCACTCAGAGCTTTT 58.386 47.619 0.00 0.00 32.17 2.27
296 297 2.109774 CATCTCCTCCACTCAGAGCTT 58.890 52.381 0.00 0.00 32.17 3.74
297 298 1.287442 TCATCTCCTCCACTCAGAGCT 59.713 52.381 0.00 0.00 32.17 4.09
299 300 5.356291 AATTTCATCTCCTCCACTCAGAG 57.644 43.478 0.00 0.00 0.00 3.35
341 342 1.694696 GGATCGATCCTAAAGGCTGGT 59.305 52.381 32.91 0.00 43.73 4.00
371 372 3.354678 CACCACTTTGGGGCGAAG 58.645 61.111 0.00 0.00 43.37 3.79
378 379 3.013921 ACAGTTGTACACACCACTTTGG 58.986 45.455 0.00 0.00 45.02 3.28
391 392 2.252747 GTGCGCGTATGTACAGTTGTA 58.747 47.619 8.43 0.00 0.00 2.41
392 393 1.065358 GTGCGCGTATGTACAGTTGT 58.935 50.000 8.43 0.00 0.00 3.32
393 394 0.368907 GGTGCGCGTATGTACAGTTG 59.631 55.000 8.43 0.00 0.00 3.16
394 395 0.038067 TGGTGCGCGTATGTACAGTT 60.038 50.000 8.43 0.00 0.00 3.16
395 396 0.457853 CTGGTGCGCGTATGTACAGT 60.458 55.000 8.43 0.00 0.00 3.55
396 397 1.145759 CCTGGTGCGCGTATGTACAG 61.146 60.000 8.43 10.68 0.00 2.74
402 403 0.178068 AATTCTCCTGGTGCGCGTAT 59.822 50.000 8.43 0.00 0.00 3.06
403 404 0.739462 CAATTCTCCTGGTGCGCGTA 60.739 55.000 8.43 0.00 0.00 4.42
409 410 0.606401 ACGTGCCAATTCTCCTGGTG 60.606 55.000 0.00 0.00 36.24 4.17
434 435 1.550065 CAGCGGACACGACTATTCTG 58.450 55.000 0.00 0.00 44.60 3.02
467 468 1.275291 GATGACGAGGGTGAAGGTGAA 59.725 52.381 0.00 0.00 0.00 3.18
474 475 1.272258 TGTAGGTGATGACGAGGGTGA 60.272 52.381 0.00 0.00 0.00 4.02
480 481 3.130516 GGTCTTGATGTAGGTGATGACGA 59.869 47.826 0.00 0.00 0.00 4.20
521 522 0.529119 GTCGAACGTGACACCCACTT 60.529 55.000 0.00 0.00 43.53 3.16
581 583 3.425659 AGTGAGTGATAGTGTCTCTGCA 58.574 45.455 0.00 0.00 31.12 4.41
595 597 1.003116 GCACAAGTCAGCAAGTGAGTG 60.003 52.381 0.00 0.00 38.96 3.51
616 618 0.251341 ACCACCATCCTTTGCTGGAC 60.251 55.000 0.00 0.00 39.17 4.02
617 619 0.482446 AACCACCATCCTTTGCTGGA 59.518 50.000 0.00 0.00 40.82 3.86
647 649 3.782443 CTGGCCCCTGTACGGACC 61.782 72.222 2.31 2.36 33.16 4.46
653 655 3.587951 TGTAAACAATACTGGCCCCTGTA 59.412 43.478 0.00 6.53 35.44 2.74
674 778 9.864034 GATACGTGTTTTGGAGAAATATACATG 57.136 33.333 0.00 0.00 0.00 3.21
682 786 6.938030 ACAATAGGATACGTGTTTTGGAGAAA 59.062 34.615 0.00 0.00 46.39 2.52
687 791 5.873179 ACACAATAGGATACGTGTTTTGG 57.127 39.130 0.00 0.00 37.27 3.28
689 793 9.826574 ACATATACACAATAGGATACGTGTTTT 57.173 29.630 0.00 0.00 40.05 2.43
730 1083 9.868277 AATTTTTAAAGTCCGATTTATGCATGA 57.132 25.926 10.16 0.00 0.00 3.07
763 3820 0.464373 CGTCCATGTCCATCCCAAGG 60.464 60.000 0.00 0.00 0.00 3.61
791 3848 5.502153 ACGGCATCACTAGACTAAACTAG 57.498 43.478 0.00 0.00 43.62 2.57
811 3868 2.582498 GCTAGTGCCGGTGCTACG 60.582 66.667 1.90 2.15 38.71 3.51
819 3876 1.880340 GCTGCTACTGCTAGTGCCG 60.880 63.158 0.00 0.00 40.48 5.69
820 3877 0.179062 ATGCTGCTACTGCTAGTGCC 60.179 55.000 0.00 0.00 40.48 5.01
828 3885 4.297299 CCAAATGGTAATGCTGCTACTG 57.703 45.455 0.00 0.00 0.00 2.74
894 3952 3.633094 ATCTATAGCCGCCGCGCAG 62.633 63.158 8.75 0.00 41.18 5.18
896 3954 3.181967 CATCTATAGCCGCCGCGC 61.182 66.667 7.42 0.00 41.18 6.86
916 3980 3.615536 GAGCGGTGGTTGTGCATGC 62.616 63.158 11.82 11.82 0.00 4.06
945 4009 1.134670 GTGGTCTAGCTGTGGATGGAC 60.135 57.143 0.00 0.00 38.36 4.02
947 4011 0.179000 GGTGGTCTAGCTGTGGATGG 59.821 60.000 0.00 0.00 0.00 3.51
948 4012 1.198713 AGGTGGTCTAGCTGTGGATG 58.801 55.000 0.00 0.00 35.38 3.51
1175 4259 2.570169 CAACAATGTAACGTTGAGCGG 58.430 47.619 11.99 0.19 44.20 5.52
1240 4324 0.782384 GTACCAACTTCAGCACGACG 59.218 55.000 0.00 0.00 0.00 5.12
1253 4337 0.694196 GGGGTTACTGCCAGTACCAA 59.306 55.000 18.78 1.14 28.93 3.67
1270 4378 0.169672 ATCGTCGTTGTAGTCGTGGG 59.830 55.000 0.00 0.00 0.00 4.61
1271 4379 1.135888 TCATCGTCGTTGTAGTCGTGG 60.136 52.381 3.38 0.00 0.00 4.94
1272 4380 2.166799 CTCATCGTCGTTGTAGTCGTG 58.833 52.381 3.38 0.00 0.00 4.35
1278 4386 1.170442 TCTGCCTCATCGTCGTTGTA 58.830 50.000 3.38 0.00 0.00 2.41
1293 4401 0.321919 TGCACTCCTCCAACATCTGC 60.322 55.000 0.00 0.00 0.00 4.26
1317 4425 3.019003 ATGGTCGTCGGAAGCCCAG 62.019 63.158 0.00 0.00 0.00 4.45
1366 4474 4.593597 AATTTATGTGTAACTCGTGCCG 57.406 40.909 0.00 0.00 38.04 5.69
1411 4519 5.307926 ACCGTCTGTTTTTAACCGAAAAA 57.692 34.783 0.00 0.00 43.26 1.94
1412 4520 4.961435 ACCGTCTGTTTTTAACCGAAAA 57.039 36.364 0.00 0.00 35.16 2.29
1413 4521 4.961435 AACCGTCTGTTTTTAACCGAAA 57.039 36.364 0.00 0.00 31.47 3.46
1414 4522 5.584251 AGTTAACCGTCTGTTTTTAACCGAA 59.416 36.000 0.88 0.00 38.42 4.30
1415 4523 5.115480 AGTTAACCGTCTGTTTTTAACCGA 58.885 37.500 0.88 0.00 38.42 4.69
1416 4524 5.408204 AGTTAACCGTCTGTTTTTAACCG 57.592 39.130 0.88 0.00 38.42 4.44
1417 4525 7.439356 ACTCTAGTTAACCGTCTGTTTTTAACC 59.561 37.037 0.88 0.00 38.42 2.85
1418 4526 8.271487 CACTCTAGTTAACCGTCTGTTTTTAAC 58.729 37.037 0.88 0.00 38.42 2.01
1419 4527 7.981225 ACACTCTAGTTAACCGTCTGTTTTTAA 59.019 33.333 0.88 0.00 38.42 1.52
1420 4528 7.436080 CACACTCTAGTTAACCGTCTGTTTTTA 59.564 37.037 0.88 0.00 38.42 1.52
1421 4529 6.257193 CACACTCTAGTTAACCGTCTGTTTTT 59.743 38.462 0.88 0.00 38.42 1.94
1422 4530 5.751990 CACACTCTAGTTAACCGTCTGTTTT 59.248 40.000 0.88 0.00 38.42 2.43
1441 4551 2.425312 TCGGAAACAACAATTGCACACT 59.575 40.909 5.05 0.00 0.00 3.55
1502 4612 1.496060 TCTCCATCGCATAAGGGTGT 58.504 50.000 0.00 0.00 0.00 4.16
1503 4613 2.620251 TTCTCCATCGCATAAGGGTG 57.380 50.000 0.00 0.00 0.00 4.61
1504 4614 3.279434 GTTTTCTCCATCGCATAAGGGT 58.721 45.455 0.00 0.00 0.00 4.34
1511 4621 1.804151 CTTTCGGTTTTCTCCATCGCA 59.196 47.619 0.00 0.00 0.00 5.10
1512 4622 2.073816 TCTTTCGGTTTTCTCCATCGC 58.926 47.619 0.00 0.00 0.00 4.58
1520 4631 8.488651 TCCAATATCTACTTCTTTCGGTTTTC 57.511 34.615 0.00 0.00 0.00 2.29
1525 4636 7.982354 ACTTTCTCCAATATCTACTTCTTTCGG 59.018 37.037 0.00 0.00 0.00 4.30
1534 4645 9.232473 ACAAGGAAAACTTTCTCCAATATCTAC 57.768 33.333 2.41 0.00 37.29 2.59
1550 4661 3.186613 GTCCGATCTGACACAAGGAAAAC 59.813 47.826 11.95 0.00 35.29 2.43
1703 4814 9.136323 GGACAATTAATTTGGATTAGATGGAGT 57.864 33.333 0.00 0.00 39.80 3.85
1704 4815 9.359653 AGGACAATTAATTTGGATTAGATGGAG 57.640 33.333 0.00 0.00 39.80 3.86
1705 4816 9.713684 AAGGACAATTAATTTGGATTAGATGGA 57.286 29.630 0.00 0.00 39.80 3.41
1706 4817 9.754382 CAAGGACAATTAATTTGGATTAGATGG 57.246 33.333 0.00 0.00 39.80 3.51
1723 4834 9.574516 ACAACTTTAGAATAGAACAAGGACAAT 57.425 29.630 0.00 0.00 0.00 2.71
1724 4835 8.974060 ACAACTTTAGAATAGAACAAGGACAA 57.026 30.769 0.00 0.00 0.00 3.18
1725 4836 9.485206 GTACAACTTTAGAATAGAACAAGGACA 57.515 33.333 0.00 0.00 0.00 4.02
1726 4837 9.708092 AGTACAACTTTAGAATAGAACAAGGAC 57.292 33.333 0.00 0.00 0.00 3.85
1738 4849 8.971321 CGCTGTTTTAGTAGTACAACTTTAGAA 58.029 33.333 2.52 0.00 0.00 2.10
1739 4850 8.352201 TCGCTGTTTTAGTAGTACAACTTTAGA 58.648 33.333 2.52 1.46 0.00 2.10
1740 4851 8.423215 GTCGCTGTTTTAGTAGTACAACTTTAG 58.577 37.037 2.52 0.08 0.00 1.85
1741 4852 7.920151 TGTCGCTGTTTTAGTAGTACAACTTTA 59.080 33.333 2.52 0.00 0.00 1.85
1742 4853 6.757947 TGTCGCTGTTTTAGTAGTACAACTTT 59.242 34.615 2.52 0.00 0.00 2.66
1743 4854 6.275335 TGTCGCTGTTTTAGTAGTACAACTT 58.725 36.000 2.52 0.00 0.00 2.66
1744 4855 5.835257 TGTCGCTGTTTTAGTAGTACAACT 58.165 37.500 2.52 0.00 0.00 3.16
1745 4856 6.515043 TTGTCGCTGTTTTAGTAGTACAAC 57.485 37.500 2.52 0.45 0.00 3.32
1746 4857 7.718272 ATTTGTCGCTGTTTTAGTAGTACAA 57.282 32.000 2.52 0.00 0.00 2.41
1747 4858 8.815141 TTATTTGTCGCTGTTTTAGTAGTACA 57.185 30.769 2.52 0.00 0.00 2.90
1750 4861 9.607285 CAAATTATTTGTCGCTGTTTTAGTAGT 57.393 29.630 9.33 0.00 35.94 2.73
1751 4862 9.061610 CCAAATTATTTGTCGCTGTTTTAGTAG 57.938 33.333 15.40 0.00 38.98 2.57
1762 4873 4.527564 CTCGGATCCAAATTATTTGTCGC 58.472 43.478 13.41 5.04 38.98 5.19
1763 4874 4.024048 CCCTCGGATCCAAATTATTTGTCG 60.024 45.833 13.41 12.80 38.98 4.35
1764 4875 5.130350 TCCCTCGGATCCAAATTATTTGTC 58.870 41.667 13.41 8.02 38.98 3.18
1768 4879 5.607171 AGTACTCCCTCGGATCCAAATTATT 59.393 40.000 13.41 0.00 0.00 1.40
1769 4880 5.155905 AGTACTCCCTCGGATCCAAATTAT 58.844 41.667 13.41 0.00 0.00 1.28
1781 4892 7.769220 TCTTATTTGAAAGTAGTACTCCCTCG 58.231 38.462 2.58 0.00 0.00 4.63
1823 4934 6.801539 TTACCATATGTTAATGCTGCTAGC 57.198 37.500 8.10 8.10 42.82 3.42
1848 4959 5.717078 TGACCTTTACTGATCACGTACTT 57.283 39.130 0.00 0.00 0.00 2.24
1859 4970 9.394477 GCACTAAAGTTAATTTGACCTTTACTG 57.606 33.333 0.00 0.00 32.01 2.74
1899 5012 7.283807 ACGTGGTACCTTTGAAAAGAAAAGTAT 59.716 33.333 14.36 0.00 38.28 2.12
1939 5052 6.971726 ATCTACGGAACCTACACATGATTA 57.028 37.500 0.00 0.00 0.00 1.75
1940 5053 5.871396 ATCTACGGAACCTACACATGATT 57.129 39.130 0.00 0.00 0.00 2.57
1949 5062 9.672673 GTGGTATAAGTATATCTACGGAACCTA 57.327 37.037 0.00 0.00 32.82 3.08
1964 5077 3.709653 CAGGGGCTCTTGTGGTATAAGTA 59.290 47.826 0.00 0.00 0.00 2.24
1965 5078 2.505819 CAGGGGCTCTTGTGGTATAAGT 59.494 50.000 0.00 0.00 0.00 2.24
1972 5085 1.151450 AACACAGGGGCTCTTGTGG 59.849 57.895 29.92 13.98 36.67 4.17
1975 5088 1.108727 TTGCAACACAGGGGCTCTTG 61.109 55.000 0.00 0.00 0.00 3.02
1984 5097 0.817634 TTCCTCCCGTTGCAACACAG 60.818 55.000 28.01 18.66 0.00 3.66
2004 5117 5.836358 TGGGCTAAGAGTTTGTGGTATTTTT 59.164 36.000 0.00 0.00 0.00 1.94
2024 5137 4.816925 GGTCTTCAGTAATGACTATTGGGC 59.183 45.833 0.00 0.00 33.32 5.36
2032 5145 4.652822 ACTTTGGGGTCTTCAGTAATGAC 58.347 43.478 0.00 0.00 0.00 3.06
2037 5150 2.370849 GTGGACTTTGGGGTCTTCAGTA 59.629 50.000 0.00 0.00 36.55 2.74
2041 5154 0.108019 ACGTGGACTTTGGGGTCTTC 59.892 55.000 0.00 0.00 36.55 2.87
2046 5159 1.687563 AAAGAACGTGGACTTTGGGG 58.312 50.000 12.52 0.00 35.44 4.96
2074 5187 3.999001 CGGCAACACATATGAGATGCTAT 59.001 43.478 26.09 0.00 35.36 2.97
2082 5195 3.138304 GGATAAGCGGCAACACATATGA 58.862 45.455 10.38 0.00 0.00 2.15
2083 5196 3.141398 AGGATAAGCGGCAACACATATG 58.859 45.455 1.45 0.00 0.00 1.78
2086 5199 1.668419 GAGGATAAGCGGCAACACAT 58.332 50.000 1.45 0.00 0.00 3.21
2088 5201 0.107654 AGGAGGATAAGCGGCAACAC 60.108 55.000 1.45 0.00 0.00 3.32
2121 5234 0.036732 TGGGCATTGAGGACACTGTC 59.963 55.000 0.00 0.00 31.92 3.51
2124 5237 1.003355 CGTGGGCATTGAGGACACT 60.003 57.895 0.00 0.00 0.00 3.55
2163 5276 6.045955 GGAGTGACATCTTAGGATTGAGAAC 58.954 44.000 0.00 0.00 0.00 3.01
2166 5279 4.653341 AGGGAGTGACATCTTAGGATTGAG 59.347 45.833 0.00 0.00 0.00 3.02
2179 5292 2.209690 TATGTCGACAGGGAGTGACA 57.790 50.000 24.41 0.00 40.20 3.58
2188 5301 3.553511 GGTTGCTCATCTTATGTCGACAG 59.446 47.826 24.41 10.66 0.00 3.51
2228 5341 2.667137 CACGTCTCAGAGAAACCTCAC 58.333 52.381 0.20 0.00 33.16 3.51
2245 5358 1.790043 TCGATAATTACGCCATGCACG 59.210 47.619 4.98 4.98 0.00 5.34
2263 5376 7.758980 CCAGATTAGAGATGAAAGATACCATCG 59.241 40.741 0.00 0.00 42.81 3.84
2300 5413 8.287439 TGTTAATCCGGATTACAAATGAACAT 57.713 30.769 31.90 8.87 33.40 2.71
2316 5429 4.790878 TCTATCGTTCCGATGTTAATCCG 58.209 43.478 9.24 0.00 46.43 4.18
2321 5434 5.585390 GGTCTTTCTATCGTTCCGATGTTA 58.415 41.667 9.24 0.00 46.43 2.41
2326 5439 2.358957 TCGGTCTTTCTATCGTTCCGA 58.641 47.619 0.00 0.00 42.33 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.