Multiple sequence alignment - TraesCS3A01G482300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G482300 chr3A 100.000 3620 0 0 1 3620 713105619 713102000 0.000000e+00 6685.0
1 TraesCS3A01G482300 chr3A 91.040 692 38 9 2934 3620 255113191 255113863 0.000000e+00 913.0
2 TraesCS3A01G482300 chr3A 87.157 802 91 9 2137 2932 712947565 712946770 0.000000e+00 900.0
3 TraesCS3A01G482300 chr3A 82.899 345 39 12 1797 2133 712948481 712948149 3.540000e-75 292.0
4 TraesCS3A01G482300 chr3D 88.555 1730 99 42 849 2524 577492768 577491084 0.000000e+00 2006.0
5 TraesCS3A01G482300 chr3D 90.850 306 21 4 2569 2871 577485759 577485458 1.570000e-108 403.0
6 TraesCS3A01G482300 chr3D 88.745 231 19 5 2290 2519 577433453 577433229 3.560000e-70 276.0
7 TraesCS3A01G482300 chr3D 88.660 194 17 5 1293 1483 577451352 577451161 7.820000e-57 231.0
8 TraesCS3A01G482300 chr3D 85.333 150 11 4 595 736 577493079 577492933 1.050000e-30 145.0
9 TraesCS3A01G482300 chr3B 88.973 1460 104 30 1173 2602 770660574 770659142 0.000000e+00 1751.0
10 TraesCS3A01G482300 chr3B 82.319 526 33 22 426 943 770661046 770660573 5.630000e-108 401.0
11 TraesCS3A01G482300 chrUn 98.542 686 9 1 2935 3620 333559802 333560486 0.000000e+00 1210.0
12 TraesCS3A01G482300 chr4A 97.293 702 17 2 2920 3620 457581877 457582577 0.000000e+00 1190.0
13 TraesCS3A01G482300 chr4A 96.439 702 23 2 2920 3620 456350577 456351277 0.000000e+00 1157.0
14 TraesCS3A01G482300 chr4A 84.000 150 17 4 440 588 565836111 565835968 1.750000e-28 137.0
15 TraesCS3A01G482300 chr4A 80.952 168 27 4 420 583 593487088 593486922 1.060000e-25 128.0
16 TraesCS3A01G482300 chr2A 97.274 697 18 1 2924 3620 528126405 528127100 0.000000e+00 1181.0
17 TraesCS3A01G482300 chr2A 90.607 692 41 9 2934 3620 83020655 83021327 0.000000e+00 896.0
18 TraesCS3A01G482300 chr2A 77.700 574 99 18 2009 2568 117752024 117751466 1.250000e-84 324.0
19 TraesCS3A01G482300 chr2A 86.939 245 30 2 999 1242 117757173 117756930 1.280000e-69 274.0
20 TraesCS3A01G482300 chr2A 86.574 216 29 0 1326 1541 117756834 117756619 4.670000e-59 239.0
21 TraesCS3A01G482300 chr2A 88.235 119 14 0 1785 1903 117752140 117752022 3.770000e-30 143.0
22 TraesCS3A01G482300 chr2A 86.598 97 12 1 420 515 424168478 424168382 4.940000e-19 106.0
23 TraesCS3A01G482300 chr1A 97.089 687 20 0 2934 3620 524421655 524420969 0.000000e+00 1158.0
24 TraesCS3A01G482300 chr1A 89.963 269 26 1 3352 3620 53669626 53669893 2.680000e-91 346.0
25 TraesCS3A01G482300 chr2D 92.154 701 49 6 2924 3620 123950422 123951120 0.000000e+00 985.0
26 TraesCS3A01G482300 chr2D 79.529 552 84 21 2007 2547 116554609 116554076 2.050000e-97 366.0
27 TraesCS3A01G482300 chr2D 89.754 244 25 0 999 1242 116555467 116555224 2.710000e-81 313.0
28 TraesCS3A01G482300 chr2D 90.367 218 21 0 1326 1543 116555117 116554900 1.640000e-73 287.0
29 TraesCS3A01G482300 chr4D 87.861 692 57 5 2934 3620 128899652 128898983 0.000000e+00 787.0
30 TraesCS3A01G482300 chr4D 86.869 99 13 0 423 521 477586123 477586221 1.060000e-20 111.0
31 TraesCS3A01G482300 chr2B 89.344 244 26 0 999 1242 166755929 166755686 1.260000e-79 307.0
32 TraesCS3A01G482300 chr2B 90.187 214 21 0 1326 1539 166755590 166755377 2.750000e-71 279.0
33 TraesCS3A01G482300 chr2B 84.043 282 37 6 1623 1903 166755358 166755084 7.710000e-67 265.0
34 TraesCS3A01G482300 chr2B 80.119 337 49 10 2149 2480 166749739 166749416 6.040000e-58 235.0
35 TraesCS3A01G482300 chr2B 82.051 156 23 4 436 588 541086367 541086520 1.060000e-25 128.0
36 TraesCS3A01G482300 chr4B 83.140 172 23 6 420 588 638357415 638357583 6.260000e-33 152.0
37 TraesCS3A01G482300 chr4B 86.813 91 6 4 420 507 545014826 545014739 2.980000e-16 97.1
38 TraesCS3A01G482300 chr6B 85.185 108 14 2 420 527 537585873 537585978 3.820000e-20 110.0
39 TraesCS3A01G482300 chr5D 84.314 102 15 1 420 520 379255714 379255613 8.270000e-17 99.0
40 TraesCS3A01G482300 chr7B 94.737 57 3 0 144 200 64665023 64664967 4.980000e-14 89.8
41 TraesCS3A01G482300 chr1B 79.545 132 18 5 259 387 607424815 607424940 6.440000e-13 86.1
42 TraesCS3A01G482300 chr1D 92.982 57 4 0 144 200 112870679 112870735 2.320000e-12 84.2
43 TraesCS3A01G482300 chr1D 92.982 57 3 1 144 200 476031368 476031313 8.330000e-12 82.4
44 TraesCS3A01G482300 chr7A 78.632 117 22 2 271 387 631370060 631369947 1.390000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G482300 chr3A 713102000 713105619 3619 True 6685.000000 6685 100.0000 1 3620 1 chr3A.!!$R1 3619
1 TraesCS3A01G482300 chr3A 255113191 255113863 672 False 913.000000 913 91.0400 2934 3620 1 chr3A.!!$F1 686
2 TraesCS3A01G482300 chr3A 712946770 712948481 1711 True 596.000000 900 85.0280 1797 2932 2 chr3A.!!$R2 1135
3 TraesCS3A01G482300 chr3D 577491084 577493079 1995 True 1075.500000 2006 86.9440 595 2524 2 chr3D.!!$R4 1929
4 TraesCS3A01G482300 chr3B 770659142 770661046 1904 True 1076.000000 1751 85.6460 426 2602 2 chr3B.!!$R1 2176
5 TraesCS3A01G482300 chrUn 333559802 333560486 684 False 1210.000000 1210 98.5420 2935 3620 1 chrUn.!!$F1 685
6 TraesCS3A01G482300 chr4A 457581877 457582577 700 False 1190.000000 1190 97.2930 2920 3620 1 chr4A.!!$F2 700
7 TraesCS3A01G482300 chr4A 456350577 456351277 700 False 1157.000000 1157 96.4390 2920 3620 1 chr4A.!!$F1 700
8 TraesCS3A01G482300 chr2A 528126405 528127100 695 False 1181.000000 1181 97.2740 2924 3620 1 chr2A.!!$F2 696
9 TraesCS3A01G482300 chr2A 83020655 83021327 672 False 896.000000 896 90.6070 2934 3620 1 chr2A.!!$F1 686
10 TraesCS3A01G482300 chr2A 117756619 117757173 554 True 256.500000 274 86.7565 999 1541 2 chr2A.!!$R3 542
11 TraesCS3A01G482300 chr2A 117751466 117752140 674 True 233.500000 324 82.9675 1785 2568 2 chr2A.!!$R2 783
12 TraesCS3A01G482300 chr1A 524420969 524421655 686 True 1158.000000 1158 97.0890 2934 3620 1 chr1A.!!$R1 686
13 TraesCS3A01G482300 chr2D 123950422 123951120 698 False 985.000000 985 92.1540 2924 3620 1 chr2D.!!$F1 696
14 TraesCS3A01G482300 chr2D 116554076 116555467 1391 True 322.000000 366 86.5500 999 2547 3 chr2D.!!$R1 1548
15 TraesCS3A01G482300 chr4D 128898983 128899652 669 True 787.000000 787 87.8610 2934 3620 1 chr4D.!!$R1 686
16 TraesCS3A01G482300 chr2B 166755084 166755929 845 True 283.666667 307 87.8580 999 1903 3 chr2B.!!$R2 904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.032678 CCTGTAGCTGTATCAGGCGG 59.967 60.0 13.27 0.0 41.46 6.13 F
714 724 0.038166 ACCAACCTGAACATCGCCAT 59.962 50.0 0.00 0.0 0.00 4.40 F
953 1016 0.243907 TCGTGGTCTTCTGCTACTGC 59.756 55.0 0.00 0.0 40.20 4.40 F
954 1017 0.244994 CGTGGTCTTCTGCTACTGCT 59.755 55.0 0.00 0.0 40.48 4.24 F
1881 2037 0.603975 GGTTCCACAGCCAGTCTCAC 60.604 60.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1774 1930 0.318762 AGAGCAGGGTCTTGTCGTTC 59.681 55.000 0.0 0.0 0.00 3.95 R
1778 1934 0.390998 GAGCAGAGCAGGGTCTTGTC 60.391 60.000 0.0 0.0 0.00 3.18 R
2047 2211 0.535335 GGAGCCACCTTGACGTATGA 59.465 55.000 0.0 0.0 35.41 2.15 R
2583 3355 0.883833 CCTGCACCAAAGCCTAACTG 59.116 55.000 0.0 0.0 0.00 3.16 R
2898 3673 1.658114 GTTGCCCTGGTCCGTTTTC 59.342 57.895 0.0 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.436998 GGGGGTCTCTCACGCGTG 62.437 72.222 32.76 32.76 38.89 5.34
38 39 3.681835 GGGGTCTCTCACGCGTGT 61.682 66.667 35.74 0.00 38.89 4.49
39 40 2.338984 GGGTCTCTCACGCGTGTT 59.661 61.111 35.74 0.00 0.00 3.32
40 41 2.022129 GGGTCTCTCACGCGTGTTG 61.022 63.158 35.74 28.05 0.00 3.33
41 42 1.299926 GGTCTCTCACGCGTGTTGT 60.300 57.895 35.74 0.00 0.00 3.32
42 43 0.874607 GGTCTCTCACGCGTGTTGTT 60.875 55.000 35.74 0.00 0.00 2.83
43 44 0.503117 GTCTCTCACGCGTGTTGTTC 59.497 55.000 35.74 21.11 0.00 3.18
44 45 0.933047 TCTCTCACGCGTGTTGTTCG 60.933 55.000 35.74 19.64 0.00 3.95
45 46 1.206745 CTCTCACGCGTGTTGTTCGT 61.207 55.000 35.74 0.00 36.84 3.85
46 47 1.198397 CTCACGCGTGTTGTTCGTC 59.802 57.895 35.74 0.00 33.84 4.20
47 48 2.142418 CTCACGCGTGTTGTTCGTCC 62.142 60.000 35.74 0.00 33.84 4.79
48 49 2.202770 ACGCGTGTTGTTCGTCCA 60.203 55.556 12.93 0.00 0.00 4.02
49 50 2.235016 ACGCGTGTTGTTCGTCCAG 61.235 57.895 12.93 0.00 0.00 3.86
50 51 2.248431 GCGTGTTGTTCGTCCAGC 59.752 61.111 0.00 0.00 0.00 4.85
51 52 2.244651 GCGTGTTGTTCGTCCAGCT 61.245 57.895 0.00 0.00 0.00 4.24
52 53 1.853319 CGTGTTGTTCGTCCAGCTC 59.147 57.895 0.00 0.00 0.00 4.09
53 54 0.597637 CGTGTTGTTCGTCCAGCTCT 60.598 55.000 0.00 0.00 0.00 4.09
54 55 0.861837 GTGTTGTTCGTCCAGCTCTG 59.138 55.000 0.00 0.00 0.00 3.35
75 76 2.046314 CGTCGGCCAGTGGGAAAT 60.046 61.111 12.15 0.00 35.59 2.17
76 77 2.398554 CGTCGGCCAGTGGGAAATG 61.399 63.158 12.15 0.00 35.59 2.32
77 78 1.002624 GTCGGCCAGTGGGAAATGA 60.003 57.895 12.15 0.00 35.59 2.57
78 79 0.608035 GTCGGCCAGTGGGAAATGAA 60.608 55.000 12.15 0.00 35.59 2.57
79 80 0.608035 TCGGCCAGTGGGAAATGAAC 60.608 55.000 12.15 0.00 35.59 3.18
80 81 1.883021 GGCCAGTGGGAAATGAACG 59.117 57.895 12.15 0.00 35.59 3.95
81 82 0.608035 GGCCAGTGGGAAATGAACGA 60.608 55.000 12.15 0.00 35.59 3.85
82 83 1.243902 GCCAGTGGGAAATGAACGAA 58.756 50.000 12.15 0.00 35.59 3.85
83 84 1.200020 GCCAGTGGGAAATGAACGAAG 59.800 52.381 12.15 0.00 35.59 3.79
84 85 2.778299 CCAGTGGGAAATGAACGAAGA 58.222 47.619 0.00 0.00 35.59 2.87
85 86 2.744202 CCAGTGGGAAATGAACGAAGAG 59.256 50.000 0.00 0.00 35.59 2.85
86 87 3.557054 CCAGTGGGAAATGAACGAAGAGA 60.557 47.826 0.00 0.00 35.59 3.10
87 88 4.256920 CAGTGGGAAATGAACGAAGAGAT 58.743 43.478 0.00 0.00 0.00 2.75
88 89 4.697352 CAGTGGGAAATGAACGAAGAGATT 59.303 41.667 0.00 0.00 0.00 2.40
89 90 4.697352 AGTGGGAAATGAACGAAGAGATTG 59.303 41.667 0.00 0.00 0.00 2.67
90 91 4.695455 GTGGGAAATGAACGAAGAGATTGA 59.305 41.667 0.00 0.00 0.00 2.57
91 92 4.937620 TGGGAAATGAACGAAGAGATTGAG 59.062 41.667 0.00 0.00 0.00 3.02
92 93 5.178797 GGGAAATGAACGAAGAGATTGAGA 58.821 41.667 0.00 0.00 0.00 3.27
93 94 5.643777 GGGAAATGAACGAAGAGATTGAGAA 59.356 40.000 0.00 0.00 0.00 2.87
94 95 6.183360 GGGAAATGAACGAAGAGATTGAGAAG 60.183 42.308 0.00 0.00 0.00 2.85
95 96 6.183360 GGAAATGAACGAAGAGATTGAGAAGG 60.183 42.308 0.00 0.00 0.00 3.46
96 97 4.193826 TGAACGAAGAGATTGAGAAGGG 57.806 45.455 0.00 0.00 0.00 3.95
97 98 3.832490 TGAACGAAGAGATTGAGAAGGGA 59.168 43.478 0.00 0.00 0.00 4.20
98 99 4.081972 TGAACGAAGAGATTGAGAAGGGAG 60.082 45.833 0.00 0.00 0.00 4.30
99 100 2.763448 ACGAAGAGATTGAGAAGGGAGG 59.237 50.000 0.00 0.00 0.00 4.30
100 101 3.027412 CGAAGAGATTGAGAAGGGAGGA 58.973 50.000 0.00 0.00 0.00 3.71
101 102 3.449018 CGAAGAGATTGAGAAGGGAGGAA 59.551 47.826 0.00 0.00 0.00 3.36
102 103 4.679372 CGAAGAGATTGAGAAGGGAGGAAC 60.679 50.000 0.00 0.00 0.00 3.62
103 104 3.796111 AGAGATTGAGAAGGGAGGAACA 58.204 45.455 0.00 0.00 0.00 3.18
104 105 4.171234 AGAGATTGAGAAGGGAGGAACAA 58.829 43.478 0.00 0.00 0.00 2.83
105 106 4.224818 AGAGATTGAGAAGGGAGGAACAAG 59.775 45.833 0.00 0.00 0.00 3.16
106 107 3.265479 AGATTGAGAAGGGAGGAACAAGG 59.735 47.826 0.00 0.00 0.00 3.61
107 108 0.693049 TGAGAAGGGAGGAACAAGGC 59.307 55.000 0.00 0.00 0.00 4.35
108 109 0.391793 GAGAAGGGAGGAACAAGGCG 60.392 60.000 0.00 0.00 0.00 5.52
109 110 0.836400 AGAAGGGAGGAACAAGGCGA 60.836 55.000 0.00 0.00 0.00 5.54
110 111 0.673956 GAAGGGAGGAACAAGGCGAC 60.674 60.000 0.00 0.00 0.00 5.19
112 113 0.252103 AGGGAGGAACAAGGCGACTA 60.252 55.000 0.00 0.00 42.68 2.59
113 114 0.175989 GGGAGGAACAAGGCGACTAG 59.824 60.000 0.00 0.00 42.68 2.57
114 115 0.175989 GGAGGAACAAGGCGACTAGG 59.824 60.000 0.00 0.00 42.68 3.02
115 116 1.183549 GAGGAACAAGGCGACTAGGA 58.816 55.000 0.00 0.00 42.68 2.94
116 117 1.135333 GAGGAACAAGGCGACTAGGAG 59.865 57.143 0.00 0.00 42.68 3.69
117 118 0.460459 GGAACAAGGCGACTAGGAGC 60.460 60.000 0.00 0.00 42.68 4.70
118 119 0.246635 GAACAAGGCGACTAGGAGCA 59.753 55.000 12.64 0.00 42.68 4.26
119 120 0.247736 AACAAGGCGACTAGGAGCAG 59.752 55.000 12.64 5.60 42.68 4.24
120 121 0.612174 ACAAGGCGACTAGGAGCAGA 60.612 55.000 12.64 0.00 42.68 4.26
121 122 0.749649 CAAGGCGACTAGGAGCAGAT 59.250 55.000 12.64 0.00 42.68 2.90
122 123 0.749649 AAGGCGACTAGGAGCAGATG 59.250 55.000 12.64 0.00 42.68 2.90
123 124 0.396417 AGGCGACTAGGAGCAGATGT 60.396 55.000 12.64 0.00 40.61 3.06
124 125 0.249238 GGCGACTAGGAGCAGATGTG 60.249 60.000 12.64 0.00 34.54 3.21
125 126 0.741326 GCGACTAGGAGCAGATGTGA 59.259 55.000 6.80 0.00 0.00 3.58
126 127 1.535015 GCGACTAGGAGCAGATGTGAC 60.535 57.143 6.80 0.00 0.00 3.67
127 128 1.268285 CGACTAGGAGCAGATGTGACG 60.268 57.143 0.00 0.00 0.00 4.35
128 129 1.066303 GACTAGGAGCAGATGTGACGG 59.934 57.143 0.00 0.00 0.00 4.79
129 130 1.107114 CTAGGAGCAGATGTGACGGT 58.893 55.000 0.00 0.00 0.00 4.83
130 131 1.066303 CTAGGAGCAGATGTGACGGTC 59.934 57.143 0.00 0.00 0.00 4.79
131 132 0.613292 AGGAGCAGATGTGACGGTCT 60.613 55.000 9.88 0.00 0.00 3.85
132 133 0.179124 GGAGCAGATGTGACGGTCTC 60.179 60.000 9.88 6.47 0.00 3.36
133 134 0.179124 GAGCAGATGTGACGGTCTCC 60.179 60.000 9.88 0.77 0.00 3.71
134 135 0.613292 AGCAGATGTGACGGTCTCCT 60.613 55.000 9.88 0.00 0.00 3.69
135 136 0.459237 GCAGATGTGACGGTCTCCTG 60.459 60.000 9.88 10.13 0.00 3.86
136 137 0.891373 CAGATGTGACGGTCTCCTGT 59.109 55.000 9.88 0.00 0.00 4.00
137 138 2.092323 CAGATGTGACGGTCTCCTGTA 58.908 52.381 9.88 0.00 0.00 2.74
138 139 2.098280 CAGATGTGACGGTCTCCTGTAG 59.902 54.545 9.88 0.00 0.00 2.74
139 140 0.818296 ATGTGACGGTCTCCTGTAGC 59.182 55.000 9.88 0.00 0.00 3.58
140 141 0.251209 TGTGACGGTCTCCTGTAGCT 60.251 55.000 9.88 0.00 0.00 3.32
141 142 0.171455 GTGACGGTCTCCTGTAGCTG 59.829 60.000 9.88 0.00 0.00 4.24
142 143 0.251209 TGACGGTCTCCTGTAGCTGT 60.251 55.000 9.88 0.00 0.00 4.40
143 144 1.003928 TGACGGTCTCCTGTAGCTGTA 59.996 52.381 9.88 0.00 0.00 2.74
144 145 2.299521 GACGGTCTCCTGTAGCTGTAT 58.700 52.381 0.00 0.00 0.00 2.29
145 146 2.291190 GACGGTCTCCTGTAGCTGTATC 59.709 54.545 0.00 0.00 0.00 2.24
146 147 2.298610 CGGTCTCCTGTAGCTGTATCA 58.701 52.381 0.00 0.00 0.00 2.15
147 148 2.292016 CGGTCTCCTGTAGCTGTATCAG 59.708 54.545 0.00 0.00 34.12 2.90
148 149 2.625790 GGTCTCCTGTAGCTGTATCAGG 59.374 54.545 17.20 17.20 46.94 3.86
149 150 2.035321 GTCTCCTGTAGCTGTATCAGGC 59.965 54.545 17.99 6.74 45.67 4.85
150 151 1.000827 CTCCTGTAGCTGTATCAGGCG 60.001 57.143 17.99 11.85 45.67 5.52
151 152 0.032678 CCTGTAGCTGTATCAGGCGG 59.967 60.000 13.27 0.00 41.46 6.13
152 153 0.598680 CTGTAGCTGTATCAGGCGGC 60.599 60.000 0.00 0.00 38.44 6.53
154 155 0.598680 GTAGCTGTATCAGGCGGCTG 60.599 60.000 31.58 31.58 46.77 4.85
155 156 1.748329 TAGCTGTATCAGGCGGCTGG 61.748 60.000 35.20 21.26 46.77 4.85
156 157 2.109799 CTGTATCAGGCGGCTGGG 59.890 66.667 35.20 14.53 0.00 4.45
157 158 3.466791 CTGTATCAGGCGGCTGGGG 62.467 68.421 35.20 18.08 0.00 4.96
158 159 4.256180 GTATCAGGCGGCTGGGGG 62.256 72.222 35.20 13.37 0.00 5.40
176 177 3.744559 CCGACCGGCCCATATTTG 58.255 61.111 0.00 0.00 0.00 2.32
177 178 1.896660 CCGACCGGCCCATATTTGG 60.897 63.158 0.00 0.00 43.23 3.28
185 186 3.977244 CCATATTTGGGCCGGCGC 61.977 66.667 34.64 34.64 39.56 6.53
186 187 4.326766 CATATTTGGGCCGGCGCG 62.327 66.667 34.63 18.03 35.02 6.86
208 209 4.408821 CGCCCAGCACTGCCCTTA 62.409 66.667 0.00 0.00 0.00 2.69
209 210 2.751837 GCCCAGCACTGCCCTTAC 60.752 66.667 0.00 0.00 0.00 2.34
210 211 2.756400 CCCAGCACTGCCCTTACA 59.244 61.111 0.00 0.00 0.00 2.41
211 212 1.074775 CCCAGCACTGCCCTTACAA 59.925 57.895 0.00 0.00 0.00 2.41
212 213 0.539438 CCCAGCACTGCCCTTACAAA 60.539 55.000 0.00 0.00 0.00 2.83
213 214 1.327303 CCAGCACTGCCCTTACAAAA 58.673 50.000 0.00 0.00 0.00 2.44
214 215 1.686052 CCAGCACTGCCCTTACAAAAA 59.314 47.619 0.00 0.00 0.00 1.94
215 216 2.545742 CCAGCACTGCCCTTACAAAAAC 60.546 50.000 0.00 0.00 0.00 2.43
216 217 2.362077 CAGCACTGCCCTTACAAAAACT 59.638 45.455 0.00 0.00 0.00 2.66
217 218 3.031013 AGCACTGCCCTTACAAAAACTT 58.969 40.909 0.00 0.00 0.00 2.66
218 219 3.123050 GCACTGCCCTTACAAAAACTTG 58.877 45.455 0.00 0.00 0.00 3.16
219 220 3.430236 GCACTGCCCTTACAAAAACTTGT 60.430 43.478 0.00 0.00 38.85 3.16
220 221 4.359706 CACTGCCCTTACAAAAACTTGTC 58.640 43.478 0.00 0.00 36.44 3.18
221 222 4.020543 ACTGCCCTTACAAAAACTTGTCA 58.979 39.130 0.00 0.00 36.44 3.58
222 223 4.649218 ACTGCCCTTACAAAAACTTGTCAT 59.351 37.500 0.00 0.00 36.44 3.06
223 224 4.942852 TGCCCTTACAAAAACTTGTCATG 58.057 39.130 0.00 0.00 36.44 3.07
224 225 4.202202 TGCCCTTACAAAAACTTGTCATGG 60.202 41.667 0.00 0.00 36.44 3.66
225 226 4.038642 GCCCTTACAAAAACTTGTCATGGA 59.961 41.667 0.00 0.00 36.44 3.41
226 227 5.452636 GCCCTTACAAAAACTTGTCATGGAA 60.453 40.000 0.00 0.00 36.44 3.53
227 228 6.741240 GCCCTTACAAAAACTTGTCATGGAAT 60.741 38.462 0.00 0.00 36.44 3.01
228 229 6.868339 CCCTTACAAAAACTTGTCATGGAATC 59.132 38.462 0.00 0.00 36.44 2.52
229 230 7.432869 CCTTACAAAAACTTGTCATGGAATCA 58.567 34.615 0.00 0.00 36.44 2.57
230 231 7.382218 CCTTACAAAAACTTGTCATGGAATCAC 59.618 37.037 0.00 0.00 36.44 3.06
231 232 6.219417 ACAAAAACTTGTCATGGAATCACA 57.781 33.333 0.00 0.00 0.00 3.58
232 233 6.819284 ACAAAAACTTGTCATGGAATCACAT 58.181 32.000 0.00 0.00 0.00 3.21
233 234 7.274447 ACAAAAACTTGTCATGGAATCACATT 58.726 30.769 0.00 0.00 0.00 2.71
234 235 7.439056 ACAAAAACTTGTCATGGAATCACATTC 59.561 33.333 0.00 0.00 38.55 2.67
244 245 3.411415 GAATCACATTCCAAGAAGGCG 57.589 47.619 0.00 0.00 37.29 5.52
245 246 2.496899 ATCACATTCCAAGAAGGCGT 57.503 45.000 0.00 0.00 37.29 5.68
246 247 1.522668 TCACATTCCAAGAAGGCGTG 58.477 50.000 0.00 0.00 37.29 5.34
247 248 0.523072 CACATTCCAAGAAGGCGTGG 59.477 55.000 0.00 0.00 43.96 4.94
248 249 0.110486 ACATTCCAAGAAGGCGTGGT 59.890 50.000 0.00 0.00 43.22 4.16
249 250 0.804989 CATTCCAAGAAGGCGTGGTC 59.195 55.000 0.00 0.00 43.22 4.02
250 251 0.400213 ATTCCAAGAAGGCGTGGTCA 59.600 50.000 0.00 0.00 43.22 4.02
251 252 0.181587 TTCCAAGAAGGCGTGGTCAA 59.818 50.000 0.00 0.00 43.22 3.18
252 253 0.181587 TCCAAGAAGGCGTGGTCAAA 59.818 50.000 0.00 0.00 43.22 2.69
253 254 1.028905 CCAAGAAGGCGTGGTCAAAA 58.971 50.000 0.00 0.00 38.64 2.44
254 255 1.407258 CCAAGAAGGCGTGGTCAAAAA 59.593 47.619 0.00 0.00 38.64 1.94
297 298 6.816134 AAAGCATTTTGAAACACTGGTTTT 57.184 29.167 5.97 0.00 40.80 2.43
298 299 5.799681 AGCATTTTGAAACACTGGTTTTG 57.200 34.783 0.00 0.00 46.84 2.44
299 300 5.244755 AGCATTTTGAAACACTGGTTTTGT 58.755 33.333 0.00 0.00 46.84 2.83
300 301 5.704978 AGCATTTTGAAACACTGGTTTTGTT 59.295 32.000 0.00 0.00 46.84 2.83
301 302 6.206438 AGCATTTTGAAACACTGGTTTTGTTT 59.794 30.769 0.19 0.19 46.84 2.83
302 303 6.860539 GCATTTTGAAACACTGGTTTTGTTTT 59.139 30.769 2.24 0.00 46.84 2.43
303 304 7.380870 GCATTTTGAAACACTGGTTTTGTTTTT 59.619 29.630 2.24 0.00 46.84 1.94
327 328 8.856153 TTTTACTAAGCCTTACATGAATGTGA 57.144 30.769 0.00 0.00 41.89 3.58
328 329 9.461312 TTTTACTAAGCCTTACATGAATGTGAT 57.539 29.630 0.00 0.00 41.89 3.06
329 330 9.461312 TTTACTAAGCCTTACATGAATGTGATT 57.539 29.630 0.00 0.00 41.89 2.57
330 331 7.559590 ACTAAGCCTTACATGAATGTGATTC 57.440 36.000 0.00 0.00 41.89 2.52
331 332 5.841957 AAGCCTTACATGAATGTGATTCC 57.158 39.130 0.00 0.00 41.89 3.01
332 333 4.858850 AGCCTTACATGAATGTGATTCCA 58.141 39.130 0.00 0.00 41.89 3.53
333 334 5.452255 AGCCTTACATGAATGTGATTCCAT 58.548 37.500 0.00 0.00 41.89 3.41
334 335 5.301045 AGCCTTACATGAATGTGATTCCATG 59.699 40.000 0.00 0.00 41.89 3.66
335 336 5.300034 GCCTTACATGAATGTGATTCCATGA 59.700 40.000 0.00 0.00 41.89 3.07
336 337 6.732154 CCTTACATGAATGTGATTCCATGAC 58.268 40.000 0.00 0.00 41.89 3.06
337 338 4.888038 ACATGAATGTGATTCCATGACG 57.112 40.909 0.00 0.00 40.03 4.35
338 339 4.516323 ACATGAATGTGATTCCATGACGA 58.484 39.130 0.00 0.00 40.03 4.20
339 340 4.943093 ACATGAATGTGATTCCATGACGAA 59.057 37.500 0.00 0.00 40.03 3.85
340 341 5.415389 ACATGAATGTGATTCCATGACGAAA 59.585 36.000 0.00 0.00 40.03 3.46
341 342 6.095860 ACATGAATGTGATTCCATGACGAAAT 59.904 34.615 0.00 0.00 40.03 2.17
342 343 6.513806 TGAATGTGATTCCATGACGAAATT 57.486 33.333 0.00 0.00 38.50 1.82
343 344 6.923012 TGAATGTGATTCCATGACGAAATTT 58.077 32.000 0.00 0.00 38.50 1.82
344 345 7.377398 TGAATGTGATTCCATGACGAAATTTT 58.623 30.769 0.00 0.00 38.50 1.82
345 346 8.518702 TGAATGTGATTCCATGACGAAATTTTA 58.481 29.630 0.00 0.00 38.50 1.52
346 347 9.520204 GAATGTGATTCCATGACGAAATTTTAT 57.480 29.630 0.00 0.00 33.17 1.40
350 351 8.958043 GTGATTCCATGACGAAATTTTATAAGC 58.042 33.333 0.00 0.00 0.00 3.09
351 352 8.681806 TGATTCCATGACGAAATTTTATAAGCA 58.318 29.630 0.00 0.00 0.00 3.91
352 353 8.856490 ATTCCATGACGAAATTTTATAAGCAC 57.144 30.769 0.00 0.00 0.00 4.40
353 354 7.624360 TCCATGACGAAATTTTATAAGCACT 57.376 32.000 0.00 0.00 0.00 4.40
354 355 8.050778 TCCATGACGAAATTTTATAAGCACTT 57.949 30.769 0.00 0.00 0.00 3.16
355 356 7.967854 TCCATGACGAAATTTTATAAGCACTTG 59.032 33.333 0.00 0.00 0.00 3.16
356 357 7.967854 CCATGACGAAATTTTATAAGCACTTGA 59.032 33.333 0.00 0.00 0.00 3.02
357 358 9.340695 CATGACGAAATTTTATAAGCACTTGAA 57.659 29.630 0.00 0.00 0.00 2.69
358 359 9.906660 ATGACGAAATTTTATAAGCACTTGAAA 57.093 25.926 0.00 0.00 0.00 2.69
359 360 9.176181 TGACGAAATTTTATAAGCACTTGAAAC 57.824 29.630 0.00 0.00 0.00 2.78
360 361 9.176181 GACGAAATTTTATAAGCACTTGAAACA 57.824 29.630 0.00 0.00 0.00 2.83
361 362 9.691362 ACGAAATTTTATAAGCACTTGAAACAT 57.309 25.926 0.00 0.00 0.00 2.71
367 368 9.809096 TTTTATAAGCACTTGAAACATTTGTCA 57.191 25.926 0.00 0.00 0.00 3.58
368 369 9.809096 TTTATAAGCACTTGAAACATTTGTCAA 57.191 25.926 0.00 0.00 32.91 3.18
369 370 9.979578 TTATAAGCACTTGAAACATTTGTCAAT 57.020 25.926 0.00 0.00 33.45 2.57
370 371 6.592798 AAGCACTTGAAACATTTGTCAATG 57.407 33.333 0.00 0.00 44.90 2.82
491 492 5.064558 TCCATGACAAATTTTTGCAAGCAT 58.935 33.333 0.00 0.00 41.79 3.79
498 499 7.272948 TGACAAATTTTTGCAAGCATTTGAAAC 59.727 29.630 31.98 24.94 41.79 2.78
499 500 7.314393 ACAAATTTTTGCAAGCATTTGAAACT 58.686 26.923 31.98 18.23 41.79 2.66
503 504 9.852091 AATTTTTGCAAGCATTTGAAACTTTTA 57.148 22.222 0.00 0.00 36.36 1.52
507 508 7.966246 TGCAAGCATTTGAAACTTTTATCAT 57.034 28.000 0.00 0.00 36.36 2.45
534 536 9.434420 TGTTTCTCACAAAACAAATTCAGAATT 57.566 25.926 2.20 2.20 44.02 2.17
581 583 4.857588 TCGATTTTACTCTTCAACGAGCTC 59.142 41.667 2.73 2.73 34.35 4.09
586 588 5.845985 TTACTCTTCAACGAGCTCATTTG 57.154 39.130 15.40 15.67 34.35 2.32
666 676 7.148171 GCATATTCTTGGTGCCTAAAGGATATC 60.148 40.741 0.00 0.00 33.92 1.63
713 723 0.179004 AACCAACCTGAACATCGCCA 60.179 50.000 0.00 0.00 0.00 5.69
714 724 0.038166 ACCAACCTGAACATCGCCAT 59.962 50.000 0.00 0.00 0.00 4.40
715 725 0.734889 CCAACCTGAACATCGCCATC 59.265 55.000 0.00 0.00 0.00 3.51
736 746 0.321298 TCAGTTGGCCTAAGGAACGC 60.321 55.000 3.32 0.00 0.00 4.84
737 747 0.605319 CAGTTGGCCTAAGGAACGCA 60.605 55.000 3.32 0.00 0.00 5.24
738 748 0.328258 AGTTGGCCTAAGGAACGCAT 59.672 50.000 3.32 0.00 0.00 4.73
739 749 1.557832 AGTTGGCCTAAGGAACGCATA 59.442 47.619 3.32 0.00 0.00 3.14
740 750 2.172717 AGTTGGCCTAAGGAACGCATAT 59.827 45.455 3.32 0.00 0.00 1.78
741 751 2.949644 GTTGGCCTAAGGAACGCATATT 59.050 45.455 3.32 0.00 0.00 1.28
742 752 2.846193 TGGCCTAAGGAACGCATATTC 58.154 47.619 3.32 0.00 0.00 1.75
743 753 2.438021 TGGCCTAAGGAACGCATATTCT 59.562 45.455 3.32 0.00 0.00 2.40
744 754 3.118038 TGGCCTAAGGAACGCATATTCTT 60.118 43.478 3.32 0.00 0.00 2.52
745 755 3.251004 GGCCTAAGGAACGCATATTCTTG 59.749 47.826 0.00 0.00 0.00 3.02
746 756 3.251004 GCCTAAGGAACGCATATTCTTGG 59.749 47.826 0.00 0.00 0.00 3.61
747 757 4.451900 CCTAAGGAACGCATATTCTTGGT 58.548 43.478 0.00 0.00 0.00 3.67
758 781 4.427312 CATATTCTTGGTTGGCTTTCTGC 58.573 43.478 0.00 0.00 41.94 4.26
844 899 4.039357 CCACGTCCGTGCGTCTCT 62.039 66.667 14.06 0.00 43.83 3.10
948 1011 0.534412 CTGGATCGTGGTCTTCTGCT 59.466 55.000 0.00 0.00 0.00 4.24
949 1012 1.751351 CTGGATCGTGGTCTTCTGCTA 59.249 52.381 0.00 0.00 0.00 3.49
950 1013 1.476891 TGGATCGTGGTCTTCTGCTAC 59.523 52.381 0.00 0.00 0.00 3.58
951 1014 1.751924 GGATCGTGGTCTTCTGCTACT 59.248 52.381 0.00 0.00 0.00 2.57
952 1015 2.480416 GGATCGTGGTCTTCTGCTACTG 60.480 54.545 0.00 0.00 0.00 2.74
953 1016 0.243907 TCGTGGTCTTCTGCTACTGC 59.756 55.000 0.00 0.00 40.20 4.40
954 1017 0.244994 CGTGGTCTTCTGCTACTGCT 59.755 55.000 0.00 0.00 40.48 4.24
984 1055 1.600023 TTAAAGCTCAACCACCACCG 58.400 50.000 0.00 0.00 0.00 4.94
988 1059 1.374758 GCTCAACCACCACCGAGAG 60.375 63.158 0.00 0.00 0.00 3.20
991 1062 4.681978 AACCACCACCGAGAGCGC 62.682 66.667 0.00 0.00 35.83 5.92
1397 1538 2.433664 CCAACGCGACCCTGTACC 60.434 66.667 15.93 0.00 0.00 3.34
1408 1549 3.000819 CTGTACCGGGACAGGGCA 61.001 66.667 35.61 6.31 42.68 5.36
1415 1556 1.315257 CCGGGACAGGGCAATTTCTG 61.315 60.000 0.00 0.00 37.07 3.02
1565 1718 3.687698 AGGTAACCGAACATTCCAAATCG 59.312 43.478 0.00 0.00 35.19 3.34
1575 1728 6.456853 CGAACATTCCAAATCGCTCTGAATTA 60.457 38.462 0.00 0.00 0.00 1.40
1601 1757 3.255149 ACTCAACCAGTCCGTAAGTAGTG 59.745 47.826 0.00 0.00 0.00 2.74
1602 1758 2.029649 TCAACCAGTCCGTAAGTAGTGC 60.030 50.000 0.00 0.00 0.00 4.40
1641 1797 1.537397 AGGGTGCAGCTTCAGAGGA 60.537 57.895 16.65 0.00 0.00 3.71
1755 1911 1.136305 GGCATCTCCAACTACGTGCTA 59.864 52.381 0.00 0.00 33.38 3.49
1778 1934 3.610791 TGCTCTCGCACGAGGAACG 62.611 63.158 19.09 7.50 42.25 3.95
1881 2037 0.603975 GGTTCCACAGCCAGTCTCAC 60.604 60.000 0.00 0.00 0.00 3.51
1906 2062 1.211212 TCAATCCAGATGGCAGGTCAG 59.789 52.381 0.00 0.00 34.44 3.51
1909 2065 0.907486 TCCAGATGGCAGGTCAGAAG 59.093 55.000 0.00 0.00 34.44 2.85
1910 2066 0.907486 CCAGATGGCAGGTCAGAAGA 59.093 55.000 0.00 0.00 0.00 2.87
1919 2076 2.031333 GCAGGTCAGAAGAAACTTGCAG 60.031 50.000 4.94 0.00 44.97 4.41
1925 2082 4.443394 GTCAGAAGAAACTTGCAGCAATTG 59.557 41.667 8.67 0.00 0.00 2.32
1926 2083 4.338964 TCAGAAGAAACTTGCAGCAATTGA 59.661 37.500 8.67 0.81 0.00 2.57
1927 2084 4.680110 CAGAAGAAACTTGCAGCAATTGAG 59.320 41.667 8.67 0.00 0.00 3.02
1928 2085 4.581824 AGAAGAAACTTGCAGCAATTGAGA 59.418 37.500 8.67 0.00 0.00 3.27
1929 2086 5.243283 AGAAGAAACTTGCAGCAATTGAGAT 59.757 36.000 8.67 0.00 0.00 2.75
1930 2087 5.056894 AGAAACTTGCAGCAATTGAGATC 57.943 39.130 8.67 2.27 0.00 2.75
1931 2088 4.521639 AGAAACTTGCAGCAATTGAGATCA 59.478 37.500 8.67 0.00 0.00 2.92
1932 2089 4.859304 AACTTGCAGCAATTGAGATCAA 57.141 36.364 8.67 6.21 40.51 2.57
1933 2090 4.436242 ACTTGCAGCAATTGAGATCAAG 57.564 40.909 8.67 16.48 39.47 3.02
1934 2091 2.933495 TGCAGCAATTGAGATCAAGC 57.067 45.000 10.34 2.27 39.47 4.01
1935 2092 2.443416 TGCAGCAATTGAGATCAAGCT 58.557 42.857 10.34 2.85 39.47 3.74
1936 2093 2.422479 TGCAGCAATTGAGATCAAGCTC 59.578 45.455 10.34 0.00 39.47 4.09
1949 2106 6.434340 TGAGATCAAGCTCTACTCAACAACTA 59.566 38.462 9.34 0.00 35.20 2.24
1950 2107 6.626302 AGATCAAGCTCTACTCAACAACTAC 58.374 40.000 0.00 0.00 0.00 2.73
1951 2108 6.435904 AGATCAAGCTCTACTCAACAACTACT 59.564 38.462 0.00 0.00 0.00 2.57
1953 2110 5.535030 TCAAGCTCTACTCAACAACTACTCA 59.465 40.000 0.00 0.00 0.00 3.41
1985 2149 3.499157 GGCATGTTGATGTTGCAATTTGT 59.501 39.130 0.59 0.00 38.12 2.83
2000 2164 8.594687 GTTGCAATTTGTATAATCTTTTGCGAT 58.405 29.630 0.59 0.00 40.51 4.58
2002 2166 7.972832 TGCAATTTGTATAATCTTTTGCGATCA 59.027 29.630 0.00 0.00 40.51 2.92
2047 2211 1.004628 TCTGGCACATACCAAGCACAT 59.995 47.619 0.00 0.00 39.86 3.21
2188 2932 5.725362 CCAAGAGGTCTTCAGTTAAGGTAG 58.275 45.833 0.00 0.00 35.75 3.18
2548 3320 1.871676 GTTGAGTTCGGAAAGTCCACC 59.128 52.381 0.00 0.00 35.91 4.61
2550 3322 1.487142 TGAGTTCGGAAAGTCCACCAA 59.513 47.619 0.00 0.00 35.91 3.67
2551 3323 2.105821 TGAGTTCGGAAAGTCCACCAAT 59.894 45.455 0.00 0.00 35.91 3.16
2583 3355 8.130307 ACAGTTTGCAACTTTGTATTTGATTC 57.870 30.769 0.00 0.00 40.46 2.52
2605 3377 0.539438 TTAGGCTTTGGTGCAGGTGG 60.539 55.000 0.00 0.00 34.04 4.61
2607 3379 2.914097 GCTTTGGTGCAGGTGGCT 60.914 61.111 0.00 0.00 45.15 4.75
2608 3380 2.924105 GCTTTGGTGCAGGTGGCTC 61.924 63.158 0.00 0.00 45.15 4.70
2614 3386 3.555324 TGCAGGTGGCTCCAACGA 61.555 61.111 8.51 0.00 45.15 3.85
2620 3392 3.016736 CAGGTGGCTCCAACGAATAATT 58.983 45.455 8.51 0.00 38.94 1.40
2631 3403 5.923684 TCCAACGAATAATTTTGAGTTTGGC 59.076 36.000 0.00 0.00 0.00 4.52
2644 3416 4.670227 GAGTTTGGCTCATGTTAGTGTC 57.330 45.455 0.00 0.00 43.58 3.67
2654 3426 6.144080 GGCTCATGTTAGTGTCGTTATATCAC 59.856 42.308 0.00 0.00 0.00 3.06
2658 3430 8.895737 TCATGTTAGTGTCGTTATATCACAGTA 58.104 33.333 0.00 0.00 34.94 2.74
2660 3432 9.678941 ATGTTAGTGTCGTTATATCACAGTATG 57.321 33.333 0.00 0.00 46.00 2.39
2693 3465 7.613247 TTACGACACTTATTGTATATCGCAC 57.387 36.000 0.00 0.00 39.17 5.34
2697 3469 5.593968 ACACTTATTGTATATCGCACGGAA 58.406 37.500 0.00 0.00 36.32 4.30
2702 3474 8.733458 ACTTATTGTATATCGCACGGAATAGTA 58.267 33.333 0.00 0.00 0.00 1.82
2738 3510 6.770746 TGGTTACTGTACCAGATAGAAGTC 57.229 41.667 0.00 0.00 43.14 3.01
2771 3546 0.874175 CCGCGCCATTCTTCGTATGA 60.874 55.000 0.00 0.00 0.00 2.15
2773 3548 1.571919 GCGCCATTCTTCGTATGAGT 58.428 50.000 0.00 0.00 0.00 3.41
2777 3552 4.671766 GCGCCATTCTTCGTATGAGTTTTT 60.672 41.667 0.00 0.00 0.00 1.94
2804 3579 8.436046 TTTTTGAATTTGAGCAGTTTTAGCAT 57.564 26.923 0.00 0.00 0.00 3.79
2810 3585 2.040278 TGAGCAGTTTTAGCATGGTCCT 59.960 45.455 0.00 0.00 39.98 3.85
2836 3611 9.965824 TTCTCCTCTTTTCACATGTTTAATTTC 57.034 29.630 0.00 0.00 0.00 2.17
2850 3625 7.545362 TGTTTAATTTCCATTGGTGTTTGTG 57.455 32.000 1.86 0.00 0.00 3.33
2851 3626 6.037610 TGTTTAATTTCCATTGGTGTTTGTGC 59.962 34.615 1.86 0.00 0.00 4.57
2890 3665 7.493320 TCTTAGACGTTGTTAAAGAGCAGAAAA 59.507 33.333 0.00 0.00 0.00 2.29
2891 3666 6.431198 AGACGTTGTTAAAGAGCAGAAAAA 57.569 33.333 0.00 0.00 0.00 1.94
2892 3667 6.255950 AGACGTTGTTAAAGAGCAGAAAAAC 58.744 36.000 0.00 0.00 0.00 2.43
2898 3673 1.515521 AAGAGCAGAAAAACGGCGGG 61.516 55.000 13.24 0.00 43.97 6.13
2904 3679 0.029700 AGAAAAACGGCGGGAAAACG 59.970 50.000 13.24 0.00 0.00 3.60
2910 3685 3.053896 GGCGGGAAAACGGACCAG 61.054 66.667 0.00 0.00 0.00 4.00
2955 3730 9.178758 ACATGAGAGAATTCCTTATTTAACACC 57.821 33.333 0.00 0.00 0.00 4.16
3342 4125 2.052237 GCAGCACGTCGTGTTTGG 60.052 61.111 25.18 10.72 35.75 3.28
3439 4222 0.657840 GACGTGCATGCACTATTCCC 59.342 55.000 39.46 21.64 44.16 3.97
3507 4290 4.336713 GCCCTTCGATGATTTCTTTTAGCT 59.663 41.667 0.00 0.00 0.00 3.32
3531 4316 3.699538 TCTAAAACTAGCAGAGGCATCGA 59.300 43.478 0.00 0.00 44.61 3.59
3540 4325 3.072184 AGCAGAGGCATCGAGGAAAATAT 59.928 43.478 0.00 0.00 44.61 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.436998 CACGCGTGAGAGACCCCC 62.437 72.222 34.93 0.00 33.96 5.40
21 22 3.222354 AACACGCGTGAGAGACCCC 62.222 63.158 42.94 0.00 33.96 4.95
22 23 2.022129 CAACACGCGTGAGAGACCC 61.022 63.158 42.94 0.00 33.96 4.46
23 24 0.874607 AACAACACGCGTGAGAGACC 60.875 55.000 42.94 0.00 33.96 3.85
24 25 0.503117 GAACAACACGCGTGAGAGAC 59.497 55.000 42.94 25.53 33.96 3.36
25 26 0.933047 CGAACAACACGCGTGAGAGA 60.933 55.000 42.94 0.00 33.96 3.10
26 27 1.206745 ACGAACAACACGCGTGAGAG 61.207 55.000 42.94 30.82 36.83 3.20
27 28 1.204228 GACGAACAACACGCGTGAGA 61.204 55.000 42.94 0.00 38.51 3.27
28 29 1.198397 GACGAACAACACGCGTGAG 59.802 57.895 42.94 33.45 38.51 3.51
29 30 2.232296 GGACGAACAACACGCGTGA 61.232 57.895 42.94 0.00 38.51 4.35
30 31 2.244382 GGACGAACAACACGCGTG 59.756 61.111 35.99 35.99 38.51 5.34
31 32 2.202770 TGGACGAACAACACGCGT 60.203 55.556 5.58 5.58 41.45 6.01
32 33 2.544359 CTGGACGAACAACACGCG 59.456 61.111 3.53 3.53 0.00 6.01
33 34 2.159272 GAGCTGGACGAACAACACGC 62.159 60.000 0.00 0.00 0.00 5.34
34 35 0.597637 AGAGCTGGACGAACAACACG 60.598 55.000 0.00 0.00 0.00 4.49
35 36 0.861837 CAGAGCTGGACGAACAACAC 59.138 55.000 0.00 0.00 0.00 3.32
36 37 3.289128 CAGAGCTGGACGAACAACA 57.711 52.632 0.00 0.00 0.00 3.33
58 59 2.046314 ATTTCCCACTGGCCGACG 60.046 61.111 0.00 0.00 0.00 5.12
59 60 0.608035 TTCATTTCCCACTGGCCGAC 60.608 55.000 0.00 0.00 0.00 4.79
60 61 0.608035 GTTCATTTCCCACTGGCCGA 60.608 55.000 0.00 0.00 0.00 5.54
61 62 1.883021 GTTCATTTCCCACTGGCCG 59.117 57.895 0.00 0.00 0.00 6.13
62 63 0.608035 TCGTTCATTTCCCACTGGCC 60.608 55.000 0.00 0.00 0.00 5.36
63 64 1.200020 CTTCGTTCATTTCCCACTGGC 59.800 52.381 0.00 0.00 0.00 4.85
64 65 2.744202 CTCTTCGTTCATTTCCCACTGG 59.256 50.000 0.00 0.00 0.00 4.00
65 66 3.664107 TCTCTTCGTTCATTTCCCACTG 58.336 45.455 0.00 0.00 0.00 3.66
66 67 4.559862 ATCTCTTCGTTCATTTCCCACT 57.440 40.909 0.00 0.00 0.00 4.00
67 68 4.695455 TCAATCTCTTCGTTCATTTCCCAC 59.305 41.667 0.00 0.00 0.00 4.61
68 69 4.905429 TCAATCTCTTCGTTCATTTCCCA 58.095 39.130 0.00 0.00 0.00 4.37
69 70 5.178797 TCTCAATCTCTTCGTTCATTTCCC 58.821 41.667 0.00 0.00 0.00 3.97
70 71 6.183360 CCTTCTCAATCTCTTCGTTCATTTCC 60.183 42.308 0.00 0.00 0.00 3.13
71 72 6.183360 CCCTTCTCAATCTCTTCGTTCATTTC 60.183 42.308 0.00 0.00 0.00 2.17
72 73 5.645497 CCCTTCTCAATCTCTTCGTTCATTT 59.355 40.000 0.00 0.00 0.00 2.32
73 74 5.046304 TCCCTTCTCAATCTCTTCGTTCATT 60.046 40.000 0.00 0.00 0.00 2.57
74 75 4.467795 TCCCTTCTCAATCTCTTCGTTCAT 59.532 41.667 0.00 0.00 0.00 2.57
75 76 3.832490 TCCCTTCTCAATCTCTTCGTTCA 59.168 43.478 0.00 0.00 0.00 3.18
76 77 4.429108 CTCCCTTCTCAATCTCTTCGTTC 58.571 47.826 0.00 0.00 0.00 3.95
77 78 3.196685 CCTCCCTTCTCAATCTCTTCGTT 59.803 47.826 0.00 0.00 0.00 3.85
78 79 2.763448 CCTCCCTTCTCAATCTCTTCGT 59.237 50.000 0.00 0.00 0.00 3.85
79 80 3.027412 TCCTCCCTTCTCAATCTCTTCG 58.973 50.000 0.00 0.00 0.00 3.79
80 81 4.223923 TGTTCCTCCCTTCTCAATCTCTTC 59.776 45.833 0.00 0.00 0.00 2.87
81 82 4.171234 TGTTCCTCCCTTCTCAATCTCTT 58.829 43.478 0.00 0.00 0.00 2.85
82 83 3.796111 TGTTCCTCCCTTCTCAATCTCT 58.204 45.455 0.00 0.00 0.00 3.10
83 84 4.512484 CTTGTTCCTCCCTTCTCAATCTC 58.488 47.826 0.00 0.00 0.00 2.75
84 85 3.265479 CCTTGTTCCTCCCTTCTCAATCT 59.735 47.826 0.00 0.00 0.00 2.40
85 86 3.615155 CCTTGTTCCTCCCTTCTCAATC 58.385 50.000 0.00 0.00 0.00 2.67
86 87 2.291217 GCCTTGTTCCTCCCTTCTCAAT 60.291 50.000 0.00 0.00 0.00 2.57
87 88 1.073923 GCCTTGTTCCTCCCTTCTCAA 59.926 52.381 0.00 0.00 0.00 3.02
88 89 0.693049 GCCTTGTTCCTCCCTTCTCA 59.307 55.000 0.00 0.00 0.00 3.27
89 90 0.391793 CGCCTTGTTCCTCCCTTCTC 60.392 60.000 0.00 0.00 0.00 2.87
90 91 0.836400 TCGCCTTGTTCCTCCCTTCT 60.836 55.000 0.00 0.00 0.00 2.85
91 92 0.673956 GTCGCCTTGTTCCTCCCTTC 60.674 60.000 0.00 0.00 0.00 3.46
92 93 1.128188 AGTCGCCTTGTTCCTCCCTT 61.128 55.000 0.00 0.00 0.00 3.95
93 94 0.252103 TAGTCGCCTTGTTCCTCCCT 60.252 55.000 0.00 0.00 0.00 4.20
94 95 0.175989 CTAGTCGCCTTGTTCCTCCC 59.824 60.000 0.00 0.00 0.00 4.30
95 96 0.175989 CCTAGTCGCCTTGTTCCTCC 59.824 60.000 0.00 0.00 0.00 4.30
96 97 1.135333 CTCCTAGTCGCCTTGTTCCTC 59.865 57.143 0.00 0.00 0.00 3.71
97 98 1.187087 CTCCTAGTCGCCTTGTTCCT 58.813 55.000 0.00 0.00 0.00 3.36
98 99 0.460459 GCTCCTAGTCGCCTTGTTCC 60.460 60.000 0.00 0.00 0.00 3.62
99 100 0.246635 TGCTCCTAGTCGCCTTGTTC 59.753 55.000 0.00 0.00 0.00 3.18
100 101 0.247736 CTGCTCCTAGTCGCCTTGTT 59.752 55.000 0.00 0.00 0.00 2.83
101 102 0.612174 TCTGCTCCTAGTCGCCTTGT 60.612 55.000 0.00 0.00 0.00 3.16
102 103 0.749649 ATCTGCTCCTAGTCGCCTTG 59.250 55.000 0.00 0.00 0.00 3.61
103 104 0.749649 CATCTGCTCCTAGTCGCCTT 59.250 55.000 0.00 0.00 0.00 4.35
104 105 0.396417 ACATCTGCTCCTAGTCGCCT 60.396 55.000 0.00 0.00 0.00 5.52
105 106 0.249238 CACATCTGCTCCTAGTCGCC 60.249 60.000 0.00 0.00 0.00 5.54
106 107 0.741326 TCACATCTGCTCCTAGTCGC 59.259 55.000 0.00 0.00 0.00 5.19
107 108 1.268285 CGTCACATCTGCTCCTAGTCG 60.268 57.143 0.00 0.00 0.00 4.18
108 109 1.066303 CCGTCACATCTGCTCCTAGTC 59.934 57.143 0.00 0.00 0.00 2.59
109 110 1.107114 CCGTCACATCTGCTCCTAGT 58.893 55.000 0.00 0.00 0.00 2.57
110 111 1.066303 GACCGTCACATCTGCTCCTAG 59.934 57.143 0.00 0.00 0.00 3.02
111 112 1.103803 GACCGTCACATCTGCTCCTA 58.896 55.000 0.00 0.00 0.00 2.94
112 113 0.613292 AGACCGTCACATCTGCTCCT 60.613 55.000 0.40 0.00 0.00 3.69
113 114 0.179124 GAGACCGTCACATCTGCTCC 60.179 60.000 0.40 0.00 0.00 4.70
114 115 0.179124 GGAGACCGTCACATCTGCTC 60.179 60.000 0.40 0.00 31.10 4.26
115 116 0.613292 AGGAGACCGTCACATCTGCT 60.613 55.000 0.40 0.00 38.66 4.24
116 117 0.459237 CAGGAGACCGTCACATCTGC 60.459 60.000 0.40 0.00 33.75 4.26
117 118 0.891373 ACAGGAGACCGTCACATCTG 59.109 55.000 0.40 5.34 0.00 2.90
118 119 2.370349 CTACAGGAGACCGTCACATCT 58.630 52.381 0.40 0.00 0.00 2.90
119 120 1.202313 GCTACAGGAGACCGTCACATC 60.202 57.143 0.40 0.00 0.00 3.06
120 121 0.818296 GCTACAGGAGACCGTCACAT 59.182 55.000 0.40 0.00 0.00 3.21
121 122 0.251209 AGCTACAGGAGACCGTCACA 60.251 55.000 0.40 0.00 0.00 3.58
122 123 0.171455 CAGCTACAGGAGACCGTCAC 59.829 60.000 0.40 0.00 0.00 3.67
123 124 0.251209 ACAGCTACAGGAGACCGTCA 60.251 55.000 0.40 0.00 0.00 4.35
124 125 1.747709 TACAGCTACAGGAGACCGTC 58.252 55.000 0.00 0.00 0.00 4.79
125 126 2.299521 GATACAGCTACAGGAGACCGT 58.700 52.381 0.00 0.00 0.00 4.83
126 127 2.292016 CTGATACAGCTACAGGAGACCG 59.708 54.545 0.00 0.00 0.00 4.79
133 134 0.598680 GCCGCCTGATACAGCTACAG 60.599 60.000 0.00 0.00 0.00 2.74
134 135 1.043116 AGCCGCCTGATACAGCTACA 61.043 55.000 0.00 0.00 30.46 2.74
135 136 0.598680 CAGCCGCCTGATACAGCTAC 60.599 60.000 0.00 0.00 41.77 3.58
136 137 1.742146 CAGCCGCCTGATACAGCTA 59.258 57.895 0.00 0.00 41.77 3.32
137 138 2.503061 CAGCCGCCTGATACAGCT 59.497 61.111 0.00 0.00 41.77 4.24
138 139 2.590007 CCAGCCGCCTGATACAGC 60.590 66.667 0.00 0.00 41.77 4.40
139 140 2.109799 CCCAGCCGCCTGATACAG 59.890 66.667 0.00 0.00 41.77 2.74
140 141 3.479203 CCCCAGCCGCCTGATACA 61.479 66.667 0.00 0.00 41.77 2.29
141 142 4.256180 CCCCCAGCCGCCTGATAC 62.256 72.222 0.00 0.00 41.77 2.24
159 160 1.896660 CCAAATATGGGCCGGTCGG 60.897 63.158 1.90 4.85 43.51 4.79
160 161 3.744559 CCAAATATGGGCCGGTCG 58.255 61.111 1.90 0.00 43.51 4.79
169 170 4.326766 CGCGCCGGCCCAAATATG 62.327 66.667 23.46 4.89 35.02 1.78
191 192 4.408821 TAAGGGCAGTGCTGGGCG 62.409 66.667 16.11 0.00 0.00 6.13
192 193 2.751837 GTAAGGGCAGTGCTGGGC 60.752 66.667 16.11 0.00 0.00 5.36
193 194 0.539438 TTTGTAAGGGCAGTGCTGGG 60.539 55.000 16.11 0.00 0.00 4.45
194 195 1.327303 TTTTGTAAGGGCAGTGCTGG 58.673 50.000 16.11 0.00 0.00 4.85
195 196 2.362077 AGTTTTTGTAAGGGCAGTGCTG 59.638 45.455 16.11 0.00 0.00 4.41
196 197 2.666317 AGTTTTTGTAAGGGCAGTGCT 58.334 42.857 16.11 0.00 0.00 4.40
197 198 3.123050 CAAGTTTTTGTAAGGGCAGTGC 58.877 45.455 6.55 6.55 0.00 4.40
198 199 4.385358 ACAAGTTTTTGTAAGGGCAGTG 57.615 40.909 0.00 0.00 45.45 3.66
200 201 8.132352 TCCATGACAAGTTTTTGTAAGGGCAG 62.132 42.308 4.04 0.00 45.40 4.85
201 202 6.391276 TCCATGACAAGTTTTTGTAAGGGCA 61.391 40.000 4.04 0.00 45.40 5.36
202 203 4.038642 TCCATGACAAGTTTTTGTAAGGGC 59.961 41.667 4.04 0.00 45.40 5.19
203 204 5.782893 TCCATGACAAGTTTTTGTAAGGG 57.217 39.130 0.00 2.73 46.59 3.95
208 209 7.439056 GAATGTGATTCCATGACAAGTTTTTGT 59.561 33.333 0.00 0.00 40.46 2.83
209 210 7.718272 AATGTGATTCCATGACAAGTTTTTG 57.282 32.000 0.00 0.00 40.24 2.44
210 211 7.951530 GAATGTGATTCCATGACAAGTTTTT 57.048 32.000 0.00 0.00 33.17 1.94
224 225 2.749621 ACGCCTTCTTGGAATGTGATTC 59.250 45.455 3.86 0.00 38.35 2.52
225 226 2.489329 CACGCCTTCTTGGAATGTGATT 59.511 45.455 3.86 0.00 37.24 2.57
226 227 2.086869 CACGCCTTCTTGGAATGTGAT 58.913 47.619 3.86 0.00 37.24 3.06
227 228 1.522668 CACGCCTTCTTGGAATGTGA 58.477 50.000 3.86 0.00 37.24 3.58
228 229 0.523072 CCACGCCTTCTTGGAATGTG 59.477 55.000 0.00 0.00 38.35 3.21
229 230 0.110486 ACCACGCCTTCTTGGAATGT 59.890 50.000 0.00 0.00 38.35 2.71
230 231 0.804989 GACCACGCCTTCTTGGAATG 59.195 55.000 0.00 0.00 38.35 2.67
231 232 0.400213 TGACCACGCCTTCTTGGAAT 59.600 50.000 0.00 0.00 38.35 3.01
232 233 0.181587 TTGACCACGCCTTCTTGGAA 59.818 50.000 0.00 0.00 38.35 3.53
233 234 0.181587 TTTGACCACGCCTTCTTGGA 59.818 50.000 0.00 0.00 38.35 3.53
234 235 1.028905 TTTTGACCACGCCTTCTTGG 58.971 50.000 0.00 0.00 37.61 3.61
235 236 2.861462 TTTTTGACCACGCCTTCTTG 57.139 45.000 0.00 0.00 0.00 3.02
258 259 9.810231 CAAAATGCTTTTAAATGTAGCGATTTT 57.190 25.926 16.96 16.96 36.81 1.82
259 260 9.202273 TCAAAATGCTTTTAAATGTAGCGATTT 57.798 25.926 6.02 9.09 37.73 2.17
260 261 8.755696 TCAAAATGCTTTTAAATGTAGCGATT 57.244 26.923 6.02 4.83 37.73 3.34
261 262 8.755696 TTCAAAATGCTTTTAAATGTAGCGAT 57.244 26.923 6.02 0.00 37.73 4.58
262 263 8.484008 GTTTCAAAATGCTTTTAAATGTAGCGA 58.516 29.630 6.02 0.00 37.73 4.93
263 264 8.272176 TGTTTCAAAATGCTTTTAAATGTAGCG 58.728 29.630 6.02 0.00 37.73 4.26
264 265 9.368921 GTGTTTCAAAATGCTTTTAAATGTAGC 57.631 29.630 3.82 3.82 35.50 3.58
267 268 8.397148 CCAGTGTTTCAAAATGCTTTTAAATGT 58.603 29.630 0.00 0.00 0.00 2.71
268 269 8.397148 ACCAGTGTTTCAAAATGCTTTTAAATG 58.603 29.630 0.00 0.00 0.00 2.32
269 270 8.504812 ACCAGTGTTTCAAAATGCTTTTAAAT 57.495 26.923 0.00 0.00 0.00 1.40
270 271 7.913674 ACCAGTGTTTCAAAATGCTTTTAAA 57.086 28.000 0.00 0.00 0.00 1.52
271 272 7.913674 AACCAGTGTTTCAAAATGCTTTTAA 57.086 28.000 0.00 0.00 0.00 1.52
272 273 7.913674 AAACCAGTGTTTCAAAATGCTTTTA 57.086 28.000 0.00 0.00 40.68 1.52
273 274 6.816134 AAACCAGTGTTTCAAAATGCTTTT 57.184 29.167 0.00 0.00 40.68 2.27
274 275 6.206438 ACAAAACCAGTGTTTCAAAATGCTTT 59.794 30.769 0.00 0.00 43.80 3.51
275 276 5.704978 ACAAAACCAGTGTTTCAAAATGCTT 59.295 32.000 0.00 0.00 43.80 3.91
276 277 5.244755 ACAAAACCAGTGTTTCAAAATGCT 58.755 33.333 0.00 0.00 43.80 3.79
277 278 5.544136 ACAAAACCAGTGTTTCAAAATGC 57.456 34.783 0.00 0.00 43.80 3.56
278 279 8.794308 AAAAACAAAACCAGTGTTTCAAAATG 57.206 26.923 3.24 0.00 45.97 2.32
301 302 9.290988 TCACATTCATGTAAGGCTTAGTAAAAA 57.709 29.630 7.33 0.00 39.39 1.94
302 303 8.856153 TCACATTCATGTAAGGCTTAGTAAAA 57.144 30.769 7.33 1.22 39.39 1.52
303 304 9.461312 AATCACATTCATGTAAGGCTTAGTAAA 57.539 29.630 7.33 0.86 39.39 2.01
304 305 9.109393 GAATCACATTCATGTAAGGCTTAGTAA 57.891 33.333 7.33 0.48 39.39 2.24
305 306 7.715249 GGAATCACATTCATGTAAGGCTTAGTA 59.285 37.037 7.33 0.18 41.03 1.82
306 307 6.543831 GGAATCACATTCATGTAAGGCTTAGT 59.456 38.462 7.33 0.00 41.03 2.24
307 308 6.543465 TGGAATCACATTCATGTAAGGCTTAG 59.457 38.462 7.33 0.00 41.03 2.18
308 309 6.422333 TGGAATCACATTCATGTAAGGCTTA 58.578 36.000 2.04 2.04 41.03 3.09
309 310 5.263599 TGGAATCACATTCATGTAAGGCTT 58.736 37.500 4.58 4.58 41.03 4.35
310 311 4.858850 TGGAATCACATTCATGTAAGGCT 58.141 39.130 0.00 0.00 41.03 4.58
311 312 5.300034 TCATGGAATCACATTCATGTAAGGC 59.700 40.000 0.00 0.00 41.03 4.35
312 313 6.512253 CGTCATGGAATCACATTCATGTAAGG 60.512 42.308 0.00 0.00 41.03 2.69
313 314 6.258507 TCGTCATGGAATCACATTCATGTAAG 59.741 38.462 0.00 0.00 41.03 2.34
314 315 6.112058 TCGTCATGGAATCACATTCATGTAA 58.888 36.000 0.00 0.00 41.03 2.41
315 316 5.669477 TCGTCATGGAATCACATTCATGTA 58.331 37.500 0.00 0.00 41.03 2.29
316 317 4.516323 TCGTCATGGAATCACATTCATGT 58.484 39.130 0.00 0.00 41.03 3.21
317 318 5.488645 TTCGTCATGGAATCACATTCATG 57.511 39.130 0.00 0.00 41.03 3.07
318 319 6.704289 ATTTCGTCATGGAATCACATTCAT 57.296 33.333 0.00 0.00 41.03 2.57
319 320 6.513806 AATTTCGTCATGGAATCACATTCA 57.486 33.333 0.00 0.00 41.03 2.57
320 321 7.816945 AAAATTTCGTCATGGAATCACATTC 57.183 32.000 0.00 0.00 38.55 2.67
324 325 8.958043 GCTTATAAAATTTCGTCATGGAATCAC 58.042 33.333 0.00 0.00 0.00 3.06
325 326 8.681806 TGCTTATAAAATTTCGTCATGGAATCA 58.318 29.630 0.00 0.00 0.00 2.57
326 327 8.958043 GTGCTTATAAAATTTCGTCATGGAATC 58.042 33.333 0.00 0.00 0.00 2.52
327 328 8.686334 AGTGCTTATAAAATTTCGTCATGGAAT 58.314 29.630 0.00 0.00 0.00 3.01
328 329 8.050778 AGTGCTTATAAAATTTCGTCATGGAA 57.949 30.769 0.00 0.00 0.00 3.53
329 330 7.624360 AGTGCTTATAAAATTTCGTCATGGA 57.376 32.000 0.00 0.00 0.00 3.41
330 331 7.967854 TCAAGTGCTTATAAAATTTCGTCATGG 59.032 33.333 0.00 0.00 0.00 3.66
331 332 8.894409 TCAAGTGCTTATAAAATTTCGTCATG 57.106 30.769 0.00 0.00 0.00 3.07
332 333 9.906660 TTTCAAGTGCTTATAAAATTTCGTCAT 57.093 25.926 0.00 0.00 0.00 3.06
333 334 9.176181 GTTTCAAGTGCTTATAAAATTTCGTCA 57.824 29.630 0.00 0.00 0.00 4.35
334 335 9.176181 TGTTTCAAGTGCTTATAAAATTTCGTC 57.824 29.630 0.00 0.00 0.00 4.20
335 336 9.691362 ATGTTTCAAGTGCTTATAAAATTTCGT 57.309 25.926 0.00 0.00 0.00 3.85
341 342 9.809096 TGACAAATGTTTCAAGTGCTTATAAAA 57.191 25.926 0.00 0.00 0.00 1.52
342 343 9.809096 TTGACAAATGTTTCAAGTGCTTATAAA 57.191 25.926 0.00 0.00 0.00 1.40
343 344 9.979578 ATTGACAAATGTTTCAAGTGCTTATAA 57.020 25.926 0.00 0.00 35.25 0.98
344 345 9.409312 CATTGACAAATGTTTCAAGTGCTTATA 57.591 29.630 0.00 0.00 38.72 0.98
345 346 8.301730 CATTGACAAATGTTTCAAGTGCTTAT 57.698 30.769 0.00 0.00 38.72 1.73
346 347 7.697352 CATTGACAAATGTTTCAAGTGCTTA 57.303 32.000 0.00 0.00 38.72 3.09
347 348 6.592798 CATTGACAAATGTTTCAAGTGCTT 57.407 33.333 0.00 0.00 38.72 3.91
458 459 8.231837 CAAAAATTTGTCATGGAATCACATTCC 58.768 33.333 8.16 8.16 44.18 3.01
459 460 7.747357 GCAAAAATTTGTCATGGAATCACATTC 59.253 33.333 7.64 0.00 40.24 2.67
475 476 7.743520 AGTTTCAAATGCTTGCAAAAATTTG 57.256 28.000 26.12 26.12 39.46 2.32
476 477 8.760103 AAAGTTTCAAATGCTTGCAAAAATTT 57.240 23.077 11.40 11.40 29.21 1.82
666 676 4.729918 AAGGCAGAGGCGGCAAGG 62.730 66.667 13.08 0.00 42.47 3.61
671 681 1.023513 CAGAAGAAAGGCAGAGGCGG 61.024 60.000 0.00 0.00 42.47 6.13
672 682 0.036952 TCAGAAGAAAGGCAGAGGCG 60.037 55.000 0.00 0.00 42.47 5.52
713 723 3.682718 CGTTCCTTAGGCCAACTGATGAT 60.683 47.826 5.01 0.00 0.00 2.45
714 724 2.354704 CGTTCCTTAGGCCAACTGATGA 60.355 50.000 5.01 0.00 0.00 2.92
715 725 2.009774 CGTTCCTTAGGCCAACTGATG 58.990 52.381 5.01 0.00 0.00 3.07
736 746 4.082081 TGCAGAAAGCCAACCAAGAATATG 60.082 41.667 0.00 0.00 44.83 1.78
737 747 4.088634 TGCAGAAAGCCAACCAAGAATAT 58.911 39.130 0.00 0.00 44.83 1.28
738 748 3.495331 TGCAGAAAGCCAACCAAGAATA 58.505 40.909 0.00 0.00 44.83 1.75
739 749 2.318908 TGCAGAAAGCCAACCAAGAAT 58.681 42.857 0.00 0.00 44.83 2.40
740 750 1.774110 TGCAGAAAGCCAACCAAGAA 58.226 45.000 0.00 0.00 44.83 2.52
741 751 1.999648 ATGCAGAAAGCCAACCAAGA 58.000 45.000 0.00 0.00 44.83 3.02
742 752 3.940209 TTATGCAGAAAGCCAACCAAG 57.060 42.857 0.00 0.00 44.83 3.61
743 753 4.888326 AATTATGCAGAAAGCCAACCAA 57.112 36.364 0.00 0.00 44.83 3.67
744 754 4.888326 AAATTATGCAGAAAGCCAACCA 57.112 36.364 0.00 0.00 44.83 3.67
745 755 4.996758 ACAAAATTATGCAGAAAGCCAACC 59.003 37.500 0.00 0.00 44.83 3.77
746 756 5.695816 TCACAAAATTATGCAGAAAGCCAAC 59.304 36.000 0.00 0.00 44.83 3.77
747 757 5.851720 TCACAAAATTATGCAGAAAGCCAA 58.148 33.333 0.00 0.00 44.83 4.52
844 899 2.108157 GTCACGGTCACAGTGGCA 59.892 61.111 7.89 0.00 43.13 4.92
888 951 1.093972 TTATTGGCGTGCCATCACTG 58.906 50.000 15.40 0.00 46.64 3.66
889 952 1.949525 GATTATTGGCGTGCCATCACT 59.050 47.619 15.40 0.25 46.64 3.41
900 963 6.165577 TGGAAAAAGCTTCAAGATTATTGGC 58.834 36.000 0.00 0.00 0.00 4.52
909 972 4.604976 CAGTGTCTGGAAAAAGCTTCAAG 58.395 43.478 0.00 0.00 0.00 3.02
940 1003 0.456221 GCCGTAGCAGTAGCAGAAGA 59.544 55.000 0.00 0.00 45.49 2.87
964 1027 1.950909 CGGTGGTGGTTGAGCTTTAAA 59.049 47.619 0.00 0.00 0.00 1.52
969 1032 1.821061 CTCTCGGTGGTGGTTGAGCT 61.821 60.000 0.00 0.00 0.00 4.09
984 1055 0.179089 ATCTGGTGTGATGCGCTCTC 60.179 55.000 9.73 6.26 0.00 3.20
991 1062 4.623814 ACCGCATCTGGTGTGATG 57.376 55.556 2.41 0.00 41.85 3.07
1397 1538 2.183409 CAGAAATTGCCCTGTCCCG 58.817 57.895 0.00 0.00 0.00 5.14
1408 1549 0.605319 TGCGTCGGGAAGCAGAAATT 60.605 50.000 5.18 0.00 40.68 1.82
1433 1574 4.373116 CACGGTGGACCACGGGAG 62.373 72.222 29.46 20.00 38.67 4.30
1565 1718 6.109359 ACTGGTTGAGTACATAATTCAGAGC 58.891 40.000 15.31 0.00 30.86 4.09
1575 1728 3.830755 ACTTACGGACTGGTTGAGTACAT 59.169 43.478 0.00 0.00 34.73 2.29
1601 1757 2.127270 CATTCACGGCACACACGC 60.127 61.111 0.00 0.00 34.00 5.34
1602 1758 1.781025 AACCATTCACGGCACACACG 61.781 55.000 0.00 0.00 37.36 4.49
1657 1813 2.166130 TTGAGCTCGGCCGTCATCAA 62.166 55.000 27.15 26.58 0.00 2.57
1774 1930 0.318762 AGAGCAGGGTCTTGTCGTTC 59.681 55.000 0.00 0.00 0.00 3.95
1776 1932 1.668294 CAGAGCAGGGTCTTGTCGT 59.332 57.895 0.00 0.00 0.00 4.34
1778 1934 0.390998 GAGCAGAGCAGGGTCTTGTC 60.391 60.000 0.00 0.00 0.00 3.18
1881 2037 2.573369 CTGCCATCTGGATTGAGGAAG 58.427 52.381 0.00 0.00 37.39 3.46
1906 2062 4.863491 TCTCAATTGCTGCAAGTTTCTTC 58.137 39.130 20.72 0.00 35.30 2.87
1909 2065 4.801891 TGATCTCAATTGCTGCAAGTTTC 58.198 39.130 20.72 11.74 35.30 2.78
1910 2066 4.859304 TGATCTCAATTGCTGCAAGTTT 57.141 36.364 20.72 8.26 35.30 2.66
1919 2076 5.114780 TGAGTAGAGCTTGATCTCAATTGC 58.885 41.667 0.00 0.00 35.02 3.56
1925 2082 5.719173 AGTTGTTGAGTAGAGCTTGATCTC 58.281 41.667 0.00 0.00 0.00 2.75
1926 2083 5.736951 AGTTGTTGAGTAGAGCTTGATCT 57.263 39.130 0.00 0.00 0.00 2.75
1927 2084 6.626302 AGTAGTTGTTGAGTAGAGCTTGATC 58.374 40.000 0.00 0.00 0.00 2.92
1928 2085 6.209589 TGAGTAGTTGTTGAGTAGAGCTTGAT 59.790 38.462 0.00 0.00 0.00 2.57
1929 2086 5.535030 TGAGTAGTTGTTGAGTAGAGCTTGA 59.465 40.000 0.00 0.00 0.00 3.02
1930 2087 5.773575 TGAGTAGTTGTTGAGTAGAGCTTG 58.226 41.667 0.00 0.00 0.00 4.01
1931 2088 6.041069 ACTTGAGTAGTTGTTGAGTAGAGCTT 59.959 38.462 0.00 0.00 31.29 3.74
1932 2089 5.536916 ACTTGAGTAGTTGTTGAGTAGAGCT 59.463 40.000 0.00 0.00 31.29 4.09
1933 2090 5.631512 CACTTGAGTAGTTGTTGAGTAGAGC 59.368 44.000 0.00 0.00 33.85 4.09
1934 2091 6.858993 GTCACTTGAGTAGTTGTTGAGTAGAG 59.141 42.308 0.00 0.00 33.85 2.43
1935 2092 6.320418 TGTCACTTGAGTAGTTGTTGAGTAGA 59.680 38.462 0.00 0.00 33.85 2.59
1936 2093 6.504398 TGTCACTTGAGTAGTTGTTGAGTAG 58.496 40.000 0.00 0.00 33.85 2.57
1949 2106 2.867624 ACATGCCAATGTCACTTGAGT 58.132 42.857 0.00 0.00 43.85 3.41
1950 2107 3.253921 TCAACATGCCAATGTCACTTGAG 59.746 43.478 0.00 0.00 46.58 3.02
1951 2108 3.220940 TCAACATGCCAATGTCACTTGA 58.779 40.909 0.00 0.00 46.58 3.02
1953 2110 3.575256 ACATCAACATGCCAATGTCACTT 59.425 39.130 0.00 0.00 46.58 3.16
1985 2149 6.148315 CCTGCAGATGATCGCAAAAGATTATA 59.852 38.462 17.39 0.00 37.76 0.98
2047 2211 0.535335 GGAGCCACCTTGACGTATGA 59.465 55.000 0.00 0.00 35.41 2.15
2188 2932 7.649973 TCAGAGTTTCAGACAAAGTAGTAGTC 58.350 38.462 0.00 0.00 0.00 2.59
2583 3355 0.883833 CCTGCACCAAAGCCTAACTG 59.116 55.000 0.00 0.00 0.00 3.16
2605 3377 6.089417 CCAAACTCAAAATTATTCGTTGGAGC 59.911 38.462 0.00 0.00 0.00 4.70
2607 3379 5.923684 GCCAAACTCAAAATTATTCGTTGGA 59.076 36.000 0.00 0.00 0.00 3.53
2608 3380 5.925969 AGCCAAACTCAAAATTATTCGTTGG 59.074 36.000 0.00 0.00 0.00 3.77
2631 3403 7.915923 ACTGTGATATAACGACACTAACATGAG 59.084 37.037 0.00 0.00 35.83 2.90
2670 3442 5.847515 CGTGCGATATACAATAAGTGTCGTA 59.152 40.000 0.00 0.00 41.98 3.43
2673 3445 5.217393 TCCGTGCGATATACAATAAGTGTC 58.783 41.667 0.00 0.00 41.98 3.67
2683 3455 7.686938 GCAAAAATACTATTCCGTGCGATATAC 59.313 37.037 0.00 0.00 0.00 1.47
2691 3463 9.019764 CCAAATTAGCAAAAATACTATTCCGTG 57.980 33.333 0.00 0.00 0.00 4.94
2693 3465 9.581099 AACCAAATTAGCAAAAATACTATTCCG 57.419 29.630 0.00 0.00 0.00 4.30
2702 3474 8.643324 TGGTACAGTAACCAAATTAGCAAAAAT 58.357 29.630 0.00 0.00 46.55 1.82
2704 3476 7.584122 TGGTACAGTAACCAAATTAGCAAAA 57.416 32.000 0.00 0.00 46.55 2.44
2779 3554 7.840342 TGCTAAAACTGCTCAAATTCAAAAA 57.160 28.000 0.00 0.00 0.00 1.94
2780 3555 7.041916 CCATGCTAAAACTGCTCAAATTCAAAA 60.042 33.333 0.00 0.00 0.00 2.44
2781 3556 6.424509 CCATGCTAAAACTGCTCAAATTCAAA 59.575 34.615 0.00 0.00 0.00 2.69
2782 3557 5.927689 CCATGCTAAAACTGCTCAAATTCAA 59.072 36.000 0.00 0.00 0.00 2.69
2783 3558 5.010922 ACCATGCTAAAACTGCTCAAATTCA 59.989 36.000 0.00 0.00 0.00 2.57
2784 3559 5.473039 ACCATGCTAAAACTGCTCAAATTC 58.527 37.500 0.00 0.00 0.00 2.17
2787 3562 3.255642 GGACCATGCTAAAACTGCTCAAA 59.744 43.478 0.00 0.00 0.00 2.69
2801 3576 2.797177 AAAGAGGAGAAGGACCATGC 57.203 50.000 0.00 0.00 0.00 4.06
2804 3579 3.045634 TGTGAAAAGAGGAGAAGGACCA 58.954 45.455 0.00 0.00 0.00 4.02
2810 3585 9.965824 GAAATTAAACATGTGAAAAGAGGAGAA 57.034 29.630 0.00 0.00 0.00 2.87
2858 3633 7.574592 GCTCTTTAACAACGTCTAAGACCTCTA 60.575 40.741 0.00 0.00 0.00 2.43
2860 3635 5.345472 GCTCTTTAACAACGTCTAAGACCTC 59.655 44.000 0.00 0.00 0.00 3.85
2865 3640 6.764877 TTCTGCTCTTTAACAACGTCTAAG 57.235 37.500 0.00 0.00 0.00 2.18
2890 3665 2.974148 GTCCGTTTTCCCGCCGTT 60.974 61.111 0.00 0.00 0.00 4.44
2891 3666 4.994471 GGTCCGTTTTCCCGCCGT 62.994 66.667 0.00 0.00 0.00 5.68
2892 3667 4.992511 TGGTCCGTTTTCCCGCCG 62.993 66.667 0.00 0.00 0.00 6.46
2898 3673 1.658114 GTTGCCCTGGTCCGTTTTC 59.342 57.895 0.00 0.00 0.00 2.29
2910 3685 5.665812 TCATGTATATATAGGAGGGTTGCCC 59.334 44.000 0.00 0.00 45.90 5.36
2955 3730 6.391227 AATAGGGCATCCAATTTTAAGACG 57.609 37.500 0.00 0.00 34.83 4.18
3439 4222 2.671396 GCTGCTTCATTGATTTTGCTGG 59.329 45.455 0.00 0.00 0.00 4.85
3507 4290 4.870426 CGATGCCTCTGCTAGTTTTAGAAA 59.130 41.667 0.00 0.00 38.71 2.52
3564 4349 2.026636 TGACAATACTACCCTTGGCACC 60.027 50.000 0.00 0.00 35.50 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.