Multiple sequence alignment - TraesCS3A01G482100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G482100 chr3A 100.000 2348 0 0 1 2348 712704145 712701798 0.000000e+00 4337
1 TraesCS3A01G482100 chr3A 79.933 299 36 14 1420 1701 595281598 595281889 5.120000e-47 198
2 TraesCS3A01G482100 chr5A 91.010 1357 120 2 4 1359 455337659 455336304 0.000000e+00 1829
3 TraesCS3A01G482100 chr5A 91.964 336 24 3 1372 1707 455336241 455335909 3.530000e-128 468
4 TraesCS3A01G482100 chr5A 86.806 288 35 3 2055 2340 283114204 283114490 3.770000e-83 318
5 TraesCS3A01G482100 chr7A 90.346 1357 129 2 4 1359 582112542 582111187 0.000000e+00 1779
6 TraesCS3A01G482100 chr7A 91.212 330 28 1 1372 1701 582111124 582110796 4.600000e-122 448
7 TraesCS3A01G482100 chr7D 84.129 1361 201 7 4 1361 577855702 577854354 0.000000e+00 1303
8 TraesCS3A01G482100 chr7D 90.937 331 26 4 1372 1701 158993070 158993397 2.140000e-120 442
9 TraesCS3A01G482100 chr7D 89.545 220 22 1 1153 1372 158992799 158993017 6.390000e-71 278
10 TraesCS3A01G482100 chr7D 88.202 178 14 6 1530 1702 563516659 563516484 3.060000e-49 206
11 TraesCS3A01G482100 chr2A 83.395 1361 216 10 4 1361 650490743 650492096 0.000000e+00 1253
12 TraesCS3A01G482100 chr2A 83.904 292 37 5 1418 1701 650492199 650492488 1.070000e-68 270
13 TraesCS3A01G482100 chr7B 79.586 1352 247 25 1 1338 87119160 87120496 0.000000e+00 941
14 TraesCS3A01G482100 chr7B 90.800 250 22 1 2048 2296 606374292 606374043 1.340000e-87 333
15 TraesCS3A01G482100 chr7B 85.473 296 39 4 2055 2348 71379904 71380197 2.930000e-79 305
16 TraesCS3A01G482100 chr4B 76.358 1730 353 46 4 1701 623488472 623490177 0.000000e+00 878
17 TraesCS3A01G482100 chr4B 80.899 267 35 15 1443 1701 241358794 241359052 1.840000e-46 196
18 TraesCS3A01G482100 chr3B 89.769 303 28 3 2047 2348 192881996 192881696 3.660000e-103 385
19 TraesCS3A01G482100 chr3B 87.205 297 34 4 2055 2348 766666034 766665739 3.740000e-88 335
20 TraesCS3A01G482100 chr3B 85.484 248 17 7 1796 2042 770609025 770608796 8.380000e-60 241
21 TraesCS3A01G482100 chr6A 91.165 249 21 1 2049 2296 100312161 100312409 1.040000e-88 337
22 TraesCS3A01G482100 chr6D 90.763 249 22 1 2049 2296 47377523 47377771 4.840000e-87 331
23 TraesCS3A01G482100 chr6D 82.900 269 32 11 1449 1707 84476419 84476155 1.810000e-56 230
24 TraesCS3A01G482100 chr5B 87.119 295 35 3 2056 2348 524769075 524768782 4.840000e-87 331
25 TraesCS3A01G482100 chr1B 87.119 295 35 3 2056 2348 52615837 52616130 4.840000e-87 331
26 TraesCS3A01G482100 chr2D 81.185 287 54 0 174 460 621500942 621500656 5.050000e-57 231
27 TraesCS3A01G482100 chr1A 86.932 176 19 2 1530 1701 476908464 476908289 6.620000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G482100 chr3A 712701798 712704145 2347 True 4337.0 4337 100.0000 1 2348 1 chr3A.!!$R1 2347
1 TraesCS3A01G482100 chr5A 455335909 455337659 1750 True 1148.5 1829 91.4870 4 1707 2 chr5A.!!$R1 1703
2 TraesCS3A01G482100 chr7A 582110796 582112542 1746 True 1113.5 1779 90.7790 4 1701 2 chr7A.!!$R1 1697
3 TraesCS3A01G482100 chr7D 577854354 577855702 1348 True 1303.0 1303 84.1290 4 1361 1 chr7D.!!$R2 1357
4 TraesCS3A01G482100 chr7D 158992799 158993397 598 False 360.0 442 90.2410 1153 1701 2 chr7D.!!$F1 548
5 TraesCS3A01G482100 chr2A 650490743 650492488 1745 False 761.5 1253 83.6495 4 1701 2 chr2A.!!$F1 1697
6 TraesCS3A01G482100 chr7B 87119160 87120496 1336 False 941.0 941 79.5860 1 1338 1 chr7B.!!$F2 1337
7 TraesCS3A01G482100 chr4B 623488472 623490177 1705 False 878.0 878 76.3580 4 1701 1 chr4B.!!$F2 1697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 719 0.177141 CGAACTGGCCCTTATCCGAA 59.823 55.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1941 2031 0.103208 ATGGATCGACGGTTCTCAGC 59.897 55.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.008019 CGTAGATTGGGATTTTGTGGATGAG 59.992 44.000 0.00 0.00 0.00 2.90
27 28 5.774179 AGATTGGGATTTTGTGGATGAGAT 58.226 37.500 0.00 0.00 0.00 2.75
65 66 1.184431 ATCGTGGATTGGCAATGCAA 58.816 45.000 31.72 20.03 41.02 4.08
94 98 2.632512 GGGAGGACATCTCATTCTCCTC 59.367 54.545 0.00 4.25 45.72 3.71
97 101 4.947645 GAGGACATCTCATTCTCCTCAAG 58.052 47.826 7.54 0.00 45.73 3.02
100 104 4.358851 GACATCTCATTCTCCTCAAGTCG 58.641 47.826 0.00 0.00 0.00 4.18
184 188 6.811253 AGTAAACTGGATAAACATCGCAAA 57.189 33.333 0.00 0.00 0.00 3.68
292 296 2.108168 CTGGGGGTGAAAGATCTACGA 58.892 52.381 0.00 0.00 0.00 3.43
337 341 3.434453 CCAAGTGGTGGTGGAAGTTAGAA 60.434 47.826 0.00 0.00 43.20 2.10
403 407 2.752354 CAAAAAGGATACGGTGGCATCA 59.248 45.455 0.00 0.00 46.39 3.07
457 461 7.402054 TCTGGAAGGCTATCATGAAAGTTAAA 58.598 34.615 0.00 0.00 0.00 1.52
482 486 9.866655 AAGAGCATTATATGATTGGTAGGAAAA 57.133 29.630 0.00 0.00 0.00 2.29
499 503 5.374071 AGGAAAATAAACGTGAACTCTGGT 58.626 37.500 0.00 0.00 0.00 4.00
503 507 7.749126 GGAAAATAAACGTGAACTCTGGTAATG 59.251 37.037 0.00 0.00 0.00 1.90
534 538 0.897863 TGGTTGGATCCTTTTGGCGG 60.898 55.000 14.23 0.00 40.12 6.13
535 539 0.610785 GGTTGGATCCTTTTGGCGGA 60.611 55.000 14.23 0.00 40.12 5.54
577 581 5.065731 CCAGTTTCCTGTCTTATTCAGCATC 59.934 44.000 0.00 0.00 36.95 3.91
583 587 6.341316 TCCTGTCTTATTCAGCATCTGTAAC 58.659 40.000 0.00 0.00 32.61 2.50
604 608 2.225068 ATCAAGAGATTACGGTGGCG 57.775 50.000 0.00 0.00 0.00 5.69
696 700 2.516225 GGTGCGGGATAAGGTGCC 60.516 66.667 0.00 0.00 34.40 5.01
712 716 4.878878 CCGAACTGGCCCTTATCC 57.121 61.111 0.00 0.00 0.00 2.59
713 717 1.227556 CCGAACTGGCCCTTATCCG 60.228 63.158 0.00 0.00 0.00 4.18
715 719 0.177141 CGAACTGGCCCTTATCCGAA 59.823 55.000 0.00 0.00 0.00 4.30
719 723 2.127708 ACTGGCCCTTATCCGAAGATT 58.872 47.619 0.00 0.00 33.67 2.40
804 809 2.041405 GAGAGGCCCCTAGCTGGT 60.041 66.667 0.00 0.00 43.05 4.00
830 835 6.493115 TGCAACTTTAAATGGATTTGGAGAGA 59.507 34.615 0.00 0.00 0.00 3.10
880 885 1.336440 TGTGGCAATTGTTTCAGGACG 59.664 47.619 7.40 0.00 0.00 4.79
1045 1050 1.588082 GGCACTGATTGTTGCCCTG 59.412 57.895 0.87 0.00 37.09 4.45
1090 1095 2.225675 TGGTGTCATGGTTACCTCCCTA 60.226 50.000 2.07 0.00 35.51 3.53
1308 1313 1.227380 GAGGATCAGTGCCGCGAAT 60.227 57.895 8.23 0.00 33.17 3.34
1320 1325 2.289631 TGCCGCGAATATGATGAGGATT 60.290 45.455 8.23 0.00 0.00 3.01
1329 1334 2.502142 TGATGAGGATTTGTGCAGCT 57.498 45.000 0.00 0.00 0.00 4.24
1345 1350 0.829333 AGCTCCGAGAGATGCAACAT 59.171 50.000 0.00 0.00 0.00 2.71
1347 1352 1.472201 GCTCCGAGAGATGCAACATGA 60.472 52.381 0.00 0.00 0.00 3.07
1367 1373 2.335712 GCGGGTGAAAAGCTGGAGG 61.336 63.158 0.00 0.00 0.00 4.30
1394 1453 2.251818 CTCCTGTATCCCGATCATGGT 58.748 52.381 0.00 0.00 0.00 3.55
1460 1519 3.869272 GTTCATGCTCCTGCGCGG 61.869 66.667 9.96 9.96 43.34 6.46
1509 1569 5.932619 TCAGGCTTGTAATAGCTGAACTA 57.067 39.130 0.00 0.00 40.99 2.24
1525 1588 5.450137 GCTGAACTATTCTGGTCGTAGCTTA 60.450 44.000 0.00 0.00 0.00 3.09
1535 1620 3.065786 TGGTCGTAGCTTATTAGGTGTCG 59.934 47.826 0.00 0.00 34.43 4.35
1558 1643 3.875023 TTTTCGCCCCGTGGTGGA 61.875 61.111 0.00 0.00 42.73 4.02
1570 1655 2.220586 TGGTGGACTGCCCGATGAA 61.221 57.895 0.00 0.00 37.93 2.57
1605 1690 0.240945 GTTTCCCAGTGATGCGTTGG 59.759 55.000 0.00 0.00 0.00 3.77
1630 1715 2.027100 CGCTTCCCCTTTCTAGGTTTCT 60.027 50.000 0.00 0.00 40.19 2.52
1701 1791 2.524569 AATGCCCGGTTCAAACAAAG 57.475 45.000 0.00 0.00 0.00 2.77
1702 1792 1.698506 ATGCCCGGTTCAAACAAAGA 58.301 45.000 0.00 0.00 0.00 2.52
1703 1793 1.475403 TGCCCGGTTCAAACAAAGAA 58.525 45.000 0.00 0.00 0.00 2.52
1704 1794 1.135333 TGCCCGGTTCAAACAAAGAAC 59.865 47.619 0.00 0.00 43.49 3.01
1712 1802 5.966636 GTTCAAACAAAGAACCAACCATC 57.033 39.130 0.00 0.00 39.48 3.51
1713 1803 4.664150 TCAAACAAAGAACCAACCATCC 57.336 40.909 0.00 0.00 0.00 3.51
1714 1804 3.386402 TCAAACAAAGAACCAACCATCCC 59.614 43.478 0.00 0.00 0.00 3.85
1715 1805 2.765689 ACAAAGAACCAACCATCCCA 57.234 45.000 0.00 0.00 0.00 4.37
1716 1806 3.039252 ACAAAGAACCAACCATCCCAA 57.961 42.857 0.00 0.00 0.00 4.12
1717 1807 3.379452 ACAAAGAACCAACCATCCCAAA 58.621 40.909 0.00 0.00 0.00 3.28
1718 1808 3.777522 ACAAAGAACCAACCATCCCAAAA 59.222 39.130 0.00 0.00 0.00 2.44
1719 1809 4.226168 ACAAAGAACCAACCATCCCAAAAA 59.774 37.500 0.00 0.00 0.00 1.94
1720 1810 4.415881 AAGAACCAACCATCCCAAAAAC 57.584 40.909 0.00 0.00 0.00 2.43
1721 1811 3.653164 AGAACCAACCATCCCAAAAACT 58.347 40.909 0.00 0.00 0.00 2.66
1722 1812 3.387699 AGAACCAACCATCCCAAAAACTG 59.612 43.478 0.00 0.00 0.00 3.16
1723 1813 2.046292 ACCAACCATCCCAAAAACTGG 58.954 47.619 0.00 0.00 45.97 4.00
1730 1820 4.293610 CCAAAAACTGGGCCCACT 57.706 55.556 24.45 9.85 42.17 4.00
1731 1821 2.526958 CCAAAAACTGGGCCCACTT 58.473 52.632 24.45 16.52 42.17 3.16
1732 1822 1.710816 CCAAAAACTGGGCCCACTTA 58.289 50.000 24.45 0.00 42.17 2.24
1733 1823 1.343142 CCAAAAACTGGGCCCACTTAC 59.657 52.381 24.45 0.00 42.17 2.34
1734 1824 1.343142 CAAAAACTGGGCCCACTTACC 59.657 52.381 24.45 0.00 0.00 2.85
1735 1825 0.538746 AAAACTGGGCCCACTTACCG 60.539 55.000 24.45 13.35 0.00 4.02
1736 1826 1.712000 AAACTGGGCCCACTTACCGT 61.712 55.000 24.45 14.15 0.00 4.83
1737 1827 2.120737 AACTGGGCCCACTTACCGTC 62.121 60.000 24.45 0.00 0.00 4.79
1738 1828 2.527123 TGGGCCCACTTACCGTCA 60.527 61.111 24.45 0.00 0.00 4.35
1739 1829 2.119484 CTGGGCCCACTTACCGTCAA 62.119 60.000 24.45 0.00 0.00 3.18
1740 1830 1.073548 GGGCCCACTTACCGTCAAA 59.926 57.895 19.95 0.00 0.00 2.69
1741 1831 0.537828 GGGCCCACTTACCGTCAAAA 60.538 55.000 19.95 0.00 0.00 2.44
1742 1832 0.594602 GGCCCACTTACCGTCAAAAC 59.405 55.000 0.00 0.00 0.00 2.43
1743 1833 1.310904 GCCCACTTACCGTCAAAACA 58.689 50.000 0.00 0.00 0.00 2.83
1744 1834 1.265905 GCCCACTTACCGTCAAAACAG 59.734 52.381 0.00 0.00 0.00 3.16
1745 1835 1.265905 CCCACTTACCGTCAAAACAGC 59.734 52.381 0.00 0.00 0.00 4.40
1746 1836 1.265905 CCACTTACCGTCAAAACAGCC 59.734 52.381 0.00 0.00 0.00 4.85
1747 1837 1.265905 CACTTACCGTCAAAACAGCCC 59.734 52.381 0.00 0.00 0.00 5.19
1748 1838 0.879090 CTTACCGTCAAAACAGCCCC 59.121 55.000 0.00 0.00 0.00 5.80
1749 1839 0.885596 TTACCGTCAAAACAGCCCCG 60.886 55.000 0.00 0.00 0.00 5.73
1750 1840 1.756408 TACCGTCAAAACAGCCCCGA 61.756 55.000 0.00 0.00 0.00 5.14
1751 1841 1.674322 CCGTCAAAACAGCCCCGAT 60.674 57.895 0.00 0.00 0.00 4.18
1752 1842 1.241315 CCGTCAAAACAGCCCCGATT 61.241 55.000 0.00 0.00 0.00 3.34
1753 1843 1.444836 CGTCAAAACAGCCCCGATTA 58.555 50.000 0.00 0.00 0.00 1.75
1754 1844 1.807742 CGTCAAAACAGCCCCGATTAA 59.192 47.619 0.00 0.00 0.00 1.40
1755 1845 2.413634 CGTCAAAACAGCCCCGATTAAC 60.414 50.000 0.00 0.00 0.00 2.01
1756 1846 2.094906 GTCAAAACAGCCCCGATTAACC 60.095 50.000 0.00 0.00 0.00 2.85
1757 1847 2.167662 CAAAACAGCCCCGATTAACCT 58.832 47.619 0.00 0.00 0.00 3.50
1758 1848 1.834188 AAACAGCCCCGATTAACCTG 58.166 50.000 0.00 0.00 0.00 4.00
1759 1849 0.988832 AACAGCCCCGATTAACCTGA 59.011 50.000 0.00 0.00 0.00 3.86
1760 1850 0.252197 ACAGCCCCGATTAACCTGAC 59.748 55.000 0.00 0.00 0.00 3.51
1761 1851 0.810031 CAGCCCCGATTAACCTGACG 60.810 60.000 0.00 0.00 0.00 4.35
1762 1852 2.178235 GCCCCGATTAACCTGACGC 61.178 63.158 0.00 0.00 0.00 5.19
1763 1853 1.523032 CCCCGATTAACCTGACGCC 60.523 63.158 0.00 0.00 0.00 5.68
1764 1854 1.523032 CCCGATTAACCTGACGCCC 60.523 63.158 0.00 0.00 0.00 6.13
1765 1855 1.520666 CCGATTAACCTGACGCCCT 59.479 57.895 0.00 0.00 0.00 5.19
1766 1856 0.529992 CCGATTAACCTGACGCCCTC 60.530 60.000 0.00 0.00 0.00 4.30
1767 1857 0.174845 CGATTAACCTGACGCCCTCA 59.825 55.000 0.00 0.00 0.00 3.86
1768 1858 1.202533 CGATTAACCTGACGCCCTCAT 60.203 52.381 0.00 0.00 0.00 2.90
1769 1859 2.741878 CGATTAACCTGACGCCCTCATT 60.742 50.000 0.00 0.00 0.00 2.57
1770 1860 2.871096 TTAACCTGACGCCCTCATTT 57.129 45.000 0.00 0.00 0.00 2.32
1771 1861 2.396590 TAACCTGACGCCCTCATTTC 57.603 50.000 0.00 0.00 0.00 2.17
1772 1862 0.322546 AACCTGACGCCCTCATTTCC 60.323 55.000 0.00 0.00 0.00 3.13
1773 1863 1.201429 ACCTGACGCCCTCATTTCCT 61.201 55.000 0.00 0.00 0.00 3.36
1774 1864 0.745845 CCTGACGCCCTCATTTCCTG 60.746 60.000 0.00 0.00 0.00 3.86
1775 1865 0.745845 CTGACGCCCTCATTTCCTGG 60.746 60.000 0.00 0.00 0.00 4.45
1776 1866 1.452108 GACGCCCTCATTTCCTGGG 60.452 63.158 0.00 0.00 43.62 4.45
1777 1867 1.910580 GACGCCCTCATTTCCTGGGA 61.911 60.000 0.91 0.00 43.47 4.37
1778 1868 1.153086 CGCCCTCATTTCCTGGGAG 60.153 63.158 0.91 0.00 43.47 4.30
1779 1869 1.454663 GCCCTCATTTCCTGGGAGC 60.455 63.158 0.91 0.00 43.47 4.70
1780 1870 1.931007 GCCCTCATTTCCTGGGAGCT 61.931 60.000 0.91 0.00 43.47 4.09
1781 1871 0.627986 CCCTCATTTCCTGGGAGCTT 59.372 55.000 0.00 0.00 43.47 3.74
1782 1872 1.846439 CCCTCATTTCCTGGGAGCTTA 59.154 52.381 0.00 0.00 43.47 3.09
1783 1873 2.158696 CCCTCATTTCCTGGGAGCTTAG 60.159 54.545 0.00 0.00 43.47 2.18
1784 1874 2.507471 CCTCATTTCCTGGGAGCTTAGT 59.493 50.000 0.00 0.00 0.00 2.24
1785 1875 3.711704 CCTCATTTCCTGGGAGCTTAGTA 59.288 47.826 0.00 0.00 0.00 1.82
1786 1876 4.443598 CCTCATTTCCTGGGAGCTTAGTAC 60.444 50.000 0.00 0.00 0.00 2.73
1787 1877 3.132289 TCATTTCCTGGGAGCTTAGTACG 59.868 47.826 0.00 0.00 0.00 3.67
1788 1878 2.226962 TTCCTGGGAGCTTAGTACGT 57.773 50.000 0.00 0.00 0.00 3.57
1789 1879 1.471119 TCCTGGGAGCTTAGTACGTG 58.529 55.000 0.00 0.00 0.00 4.49
1790 1880 1.183549 CCTGGGAGCTTAGTACGTGT 58.816 55.000 0.00 0.00 0.00 4.49
1791 1881 2.025981 TCCTGGGAGCTTAGTACGTGTA 60.026 50.000 0.00 0.00 0.00 2.90
1792 1882 2.358267 CCTGGGAGCTTAGTACGTGTAG 59.642 54.545 0.00 0.00 0.00 2.74
1793 1883 3.015327 CTGGGAGCTTAGTACGTGTAGT 58.985 50.000 0.00 0.00 0.00 2.73
1794 1884 2.751259 TGGGAGCTTAGTACGTGTAGTG 59.249 50.000 0.00 0.00 0.00 2.74
1795 1885 3.012518 GGGAGCTTAGTACGTGTAGTGA 58.987 50.000 0.00 0.00 0.00 3.41
1796 1886 3.631227 GGGAGCTTAGTACGTGTAGTGAT 59.369 47.826 0.00 0.00 0.00 3.06
1797 1887 4.818546 GGGAGCTTAGTACGTGTAGTGATA 59.181 45.833 0.00 0.00 0.00 2.15
1798 1888 5.297776 GGGAGCTTAGTACGTGTAGTGATAA 59.702 44.000 0.00 0.00 0.00 1.75
1799 1889 6.428799 GGAGCTTAGTACGTGTAGTGATAAG 58.571 44.000 0.00 0.00 36.29 1.73
1800 1890 6.259608 GGAGCTTAGTACGTGTAGTGATAAGA 59.740 42.308 0.00 0.00 35.75 2.10
1801 1891 7.249186 AGCTTAGTACGTGTAGTGATAAGAG 57.751 40.000 0.00 0.00 35.75 2.85
1802 1892 5.908499 GCTTAGTACGTGTAGTGATAAGAGC 59.092 44.000 0.00 0.00 35.75 4.09
1803 1893 4.897025 AGTACGTGTAGTGATAAGAGCC 57.103 45.455 0.00 0.00 0.00 4.70
1804 1894 4.267536 AGTACGTGTAGTGATAAGAGCCA 58.732 43.478 0.00 0.00 0.00 4.75
1805 1895 4.888239 AGTACGTGTAGTGATAAGAGCCAT 59.112 41.667 0.00 0.00 0.00 4.40
1806 1896 4.308899 ACGTGTAGTGATAAGAGCCATC 57.691 45.455 0.00 0.00 0.00 3.51
1807 1897 3.699538 ACGTGTAGTGATAAGAGCCATCA 59.300 43.478 0.00 0.00 0.00 3.07
1808 1898 4.202060 ACGTGTAGTGATAAGAGCCATCAG 60.202 45.833 0.00 0.00 33.18 2.90
1809 1899 4.202060 CGTGTAGTGATAAGAGCCATCAGT 60.202 45.833 0.00 0.00 39.04 3.41
1810 1900 5.665459 GTGTAGTGATAAGAGCCATCAGTT 58.335 41.667 0.00 0.00 37.30 3.16
1811 1901 5.521735 GTGTAGTGATAAGAGCCATCAGTTG 59.478 44.000 0.00 0.00 37.30 3.16
1812 1902 4.833478 AGTGATAAGAGCCATCAGTTGT 57.167 40.909 0.00 0.00 33.24 3.32
1813 1903 4.511527 AGTGATAAGAGCCATCAGTTGTG 58.488 43.478 0.00 0.00 33.24 3.33
1814 1904 4.019860 AGTGATAAGAGCCATCAGTTGTGT 60.020 41.667 0.00 0.00 33.24 3.72
1815 1905 4.697352 GTGATAAGAGCCATCAGTTGTGTT 59.303 41.667 0.00 0.00 33.18 3.32
1816 1906 4.696877 TGATAAGAGCCATCAGTTGTGTTG 59.303 41.667 0.00 0.00 0.00 3.33
1817 1907 1.901591 AGAGCCATCAGTTGTGTTGG 58.098 50.000 0.00 0.00 43.86 3.77
1821 1911 2.138596 CCATCAGTTGTGTTGGCAAC 57.861 50.000 23.12 23.12 46.49 4.17
1837 1927 4.489679 GGCAACAAGAATCGTTTTCTCT 57.510 40.909 4.31 0.00 0.00 3.10
1838 1928 4.467735 GGCAACAAGAATCGTTTTCTCTC 58.532 43.478 4.31 0.00 0.00 3.20
1839 1929 4.024048 GGCAACAAGAATCGTTTTCTCTCA 60.024 41.667 4.31 0.00 0.00 3.27
1840 1930 5.505654 GGCAACAAGAATCGTTTTCTCTCAA 60.506 40.000 4.31 0.00 0.00 3.02
1841 1931 5.622856 GCAACAAGAATCGTTTTCTCTCAAG 59.377 40.000 4.31 0.00 0.00 3.02
1842 1932 5.349824 ACAAGAATCGTTTTCTCTCAAGC 57.650 39.130 4.31 0.00 0.00 4.01
1843 1933 4.816385 ACAAGAATCGTTTTCTCTCAAGCA 59.184 37.500 4.31 0.00 0.00 3.91
1844 1934 5.471456 ACAAGAATCGTTTTCTCTCAAGCAT 59.529 36.000 4.31 0.00 0.00 3.79
1845 1935 6.016777 ACAAGAATCGTTTTCTCTCAAGCATT 60.017 34.615 4.31 0.00 0.00 3.56
1864 1954 9.117145 CAAGCATTGTAAACTTATGTTGTACAG 57.883 33.333 0.00 0.00 42.34 2.74
1865 1955 7.305474 AGCATTGTAAACTTATGTTGTACAGC 58.695 34.615 2.25 2.25 36.39 4.40
1866 1956 6.526674 GCATTGTAAACTTATGTTGTACAGCC 59.473 38.462 7.29 0.00 36.39 4.85
1867 1957 7.574967 GCATTGTAAACTTATGTTGTACAGCCT 60.575 37.037 7.29 0.00 36.39 4.58
1868 1958 7.811117 TTGTAAACTTATGTTGTACAGCCTT 57.189 32.000 7.29 0.00 36.39 4.35
1869 1959 7.811117 TGTAAACTTATGTTGTACAGCCTTT 57.189 32.000 7.29 0.74 36.39 3.11
1870 1960 7.644490 TGTAAACTTATGTTGTACAGCCTTTG 58.356 34.615 7.29 0.00 36.39 2.77
1871 1961 6.952773 AAACTTATGTTGTACAGCCTTTGA 57.047 33.333 7.29 0.00 36.39 2.69
1872 1962 7.524717 AAACTTATGTTGTACAGCCTTTGAT 57.475 32.000 7.29 0.00 36.39 2.57
1873 1963 7.524717 AACTTATGTTGTACAGCCTTTGATT 57.475 32.000 7.29 0.00 34.71 2.57
1874 1964 7.145932 ACTTATGTTGTACAGCCTTTGATTC 57.854 36.000 7.29 0.00 0.00 2.52
1875 1965 6.942576 ACTTATGTTGTACAGCCTTTGATTCT 59.057 34.615 7.29 0.00 0.00 2.40
1876 1966 8.100791 ACTTATGTTGTACAGCCTTTGATTCTA 58.899 33.333 7.29 0.00 0.00 2.10
1877 1967 9.113838 CTTATGTTGTACAGCCTTTGATTCTAT 57.886 33.333 7.29 0.00 0.00 1.98
1878 1968 7.944729 ATGTTGTACAGCCTTTGATTCTATT 57.055 32.000 7.29 0.00 0.00 1.73
1879 1969 7.759489 TGTTGTACAGCCTTTGATTCTATTT 57.241 32.000 7.29 0.00 0.00 1.40
1880 1970 7.816640 TGTTGTACAGCCTTTGATTCTATTTC 58.183 34.615 7.29 0.00 0.00 2.17
1881 1971 7.094377 TGTTGTACAGCCTTTGATTCTATTTCC 60.094 37.037 7.29 0.00 0.00 3.13
1882 1972 5.885912 TGTACAGCCTTTGATTCTATTTCCC 59.114 40.000 0.00 0.00 0.00 3.97
1883 1973 4.281657 ACAGCCTTTGATTCTATTTCCCC 58.718 43.478 0.00 0.00 0.00 4.81
1884 1974 3.638627 CAGCCTTTGATTCTATTTCCCCC 59.361 47.826 0.00 0.00 0.00 5.40
1904 1994 5.545063 CCCCCTCATAAACAAGTGTTTTT 57.455 39.130 14.20 4.56 45.07 1.94
1905 1995 5.538118 CCCCCTCATAAACAAGTGTTTTTC 58.462 41.667 14.20 0.00 45.07 2.29
1906 1996 5.304357 CCCCCTCATAAACAAGTGTTTTTCT 59.696 40.000 14.20 0.00 45.07 2.52
1907 1997 6.215845 CCCCTCATAAACAAGTGTTTTTCTG 58.784 40.000 14.20 10.00 45.07 3.02
1908 1998 5.691754 CCCTCATAAACAAGTGTTTTTCTGC 59.308 40.000 14.20 0.00 45.07 4.26
1909 1999 6.461509 CCCTCATAAACAAGTGTTTTTCTGCT 60.462 38.462 14.20 0.00 45.07 4.24
1910 2000 7.255451 CCCTCATAAACAAGTGTTTTTCTGCTA 60.255 37.037 14.20 0.00 45.07 3.49
1911 2001 8.134895 CCTCATAAACAAGTGTTTTTCTGCTAA 58.865 33.333 14.20 0.00 45.07 3.09
1912 2002 9.683069 CTCATAAACAAGTGTTTTTCTGCTAAT 57.317 29.630 14.20 0.00 45.07 1.73
1916 2006 8.770438 AAACAAGTGTTTTTCTGCTAATTCAA 57.230 26.923 3.57 0.00 45.07 2.69
1917 2007 8.947055 AACAAGTGTTTTTCTGCTAATTCAAT 57.053 26.923 0.00 0.00 33.93 2.57
1918 2008 8.356533 ACAAGTGTTTTTCTGCTAATTCAATG 57.643 30.769 0.00 0.00 0.00 2.82
1919 2009 7.981225 ACAAGTGTTTTTCTGCTAATTCAATGT 59.019 29.630 0.00 0.00 0.00 2.71
1920 2010 8.819974 CAAGTGTTTTTCTGCTAATTCAATGTT 58.180 29.630 0.00 0.00 0.00 2.71
1921 2011 8.356533 AGTGTTTTTCTGCTAATTCAATGTTG 57.643 30.769 0.00 0.00 0.00 3.33
1922 2012 7.439056 AGTGTTTTTCTGCTAATTCAATGTTGG 59.561 33.333 0.00 0.00 0.00 3.77
1923 2013 6.202570 TGTTTTTCTGCTAATTCAATGTTGGC 59.797 34.615 0.00 0.00 34.15 4.52
1924 2014 5.726980 TTTCTGCTAATTCAATGTTGGCT 57.273 34.783 0.00 0.00 34.58 4.75
1925 2015 4.707030 TCTGCTAATTCAATGTTGGCTG 57.293 40.909 0.00 0.00 34.58 4.85
1926 2016 4.334552 TCTGCTAATTCAATGTTGGCTGA 58.665 39.130 0.00 0.00 38.18 4.26
1927 2017 4.951715 TCTGCTAATTCAATGTTGGCTGAT 59.048 37.500 0.00 0.00 36.58 2.90
1928 2018 6.121590 TCTGCTAATTCAATGTTGGCTGATA 58.878 36.000 0.00 0.00 36.58 2.15
1929 2019 6.602803 TCTGCTAATTCAATGTTGGCTGATAA 59.397 34.615 0.00 0.00 36.58 1.75
1930 2020 7.122501 TCTGCTAATTCAATGTTGGCTGATAAA 59.877 33.333 0.00 0.00 36.58 1.40
1931 2021 7.784037 TGCTAATTCAATGTTGGCTGATAAAT 58.216 30.769 0.00 0.00 34.58 1.40
1932 2022 7.707464 TGCTAATTCAATGTTGGCTGATAAATG 59.293 33.333 0.00 0.00 34.58 2.32
1933 2023 7.707893 GCTAATTCAATGTTGGCTGATAAATGT 59.292 33.333 0.00 0.00 31.31 2.71
1934 2024 9.590451 CTAATTCAATGTTGGCTGATAAATGTT 57.410 29.630 0.00 0.00 0.00 2.71
1935 2025 7.837202 ATTCAATGTTGGCTGATAAATGTTG 57.163 32.000 0.00 0.00 0.00 3.33
1936 2026 6.343716 TCAATGTTGGCTGATAAATGTTGT 57.656 33.333 0.00 0.00 0.00 3.32
1937 2027 6.389091 TCAATGTTGGCTGATAAATGTTGTC 58.611 36.000 0.00 0.00 0.00 3.18
1938 2028 4.418013 TGTTGGCTGATAAATGTTGTCG 57.582 40.909 0.00 0.00 0.00 4.35
1939 2029 4.068599 TGTTGGCTGATAAATGTTGTCGA 58.931 39.130 0.00 0.00 0.00 4.20
1940 2030 4.083537 TGTTGGCTGATAAATGTTGTCGAC 60.084 41.667 9.11 9.11 0.00 4.20
1941 2031 2.670905 TGGCTGATAAATGTTGTCGACG 59.329 45.455 11.62 0.00 0.00 5.12
1942 2032 2.536928 GGCTGATAAATGTTGTCGACGC 60.537 50.000 11.62 7.03 0.00 5.19
1943 2033 2.348666 GCTGATAAATGTTGTCGACGCT 59.651 45.455 11.62 0.00 0.00 5.07
1944 2034 3.782250 GCTGATAAATGTTGTCGACGCTG 60.782 47.826 11.62 0.00 0.00 5.18
1945 2035 3.580731 TGATAAATGTTGTCGACGCTGA 58.419 40.909 11.62 0.00 0.00 4.26
1946 2036 3.612423 TGATAAATGTTGTCGACGCTGAG 59.388 43.478 11.62 0.00 0.00 3.35
1947 2037 2.148916 AAATGTTGTCGACGCTGAGA 57.851 45.000 11.62 0.00 0.00 3.27
1948 2038 2.148916 AATGTTGTCGACGCTGAGAA 57.851 45.000 11.62 0.00 0.00 2.87
1949 2039 1.419374 ATGTTGTCGACGCTGAGAAC 58.581 50.000 11.62 9.01 41.20 3.01
1950 2040 0.596600 TGTTGTCGACGCTGAGAACC 60.597 55.000 11.62 0.00 40.38 3.62
1951 2041 1.371267 TTGTCGACGCTGAGAACCG 60.371 57.895 11.62 0.00 0.00 4.44
1952 2042 2.067091 TTGTCGACGCTGAGAACCGT 62.067 55.000 11.62 0.00 40.85 4.83
1955 2045 2.559840 GACGCTGAGAACCGTCGA 59.440 61.111 0.00 0.00 43.37 4.20
1956 2046 1.136984 GACGCTGAGAACCGTCGAT 59.863 57.895 0.00 0.00 43.37 3.59
1957 2047 0.862283 GACGCTGAGAACCGTCGATC 60.862 60.000 0.00 0.00 43.37 3.69
1958 2048 1.586564 CGCTGAGAACCGTCGATCC 60.587 63.158 0.00 0.00 0.00 3.36
1959 2049 1.511305 GCTGAGAACCGTCGATCCA 59.489 57.895 0.00 0.00 0.00 3.41
1960 2050 0.103208 GCTGAGAACCGTCGATCCAT 59.897 55.000 0.00 0.00 0.00 3.41
1961 2051 1.845266 CTGAGAACCGTCGATCCATG 58.155 55.000 0.00 0.00 0.00 3.66
1962 2052 0.459899 TGAGAACCGTCGATCCATGG 59.540 55.000 4.97 4.97 0.00 3.66
1963 2053 0.744874 GAGAACCGTCGATCCATGGA 59.255 55.000 18.88 18.88 0.00 3.41
1964 2054 1.136305 GAGAACCGTCGATCCATGGAA 59.864 52.381 20.67 0.00 0.00 3.53
1965 2055 1.553248 AGAACCGTCGATCCATGGAAA 59.447 47.619 20.67 4.50 0.00 3.13
1966 2056 2.027561 AGAACCGTCGATCCATGGAAAA 60.028 45.455 20.67 4.09 0.00 2.29
1967 2057 2.024176 ACCGTCGATCCATGGAAAAG 57.976 50.000 20.67 13.03 0.00 2.27
1968 2058 1.278127 ACCGTCGATCCATGGAAAAGT 59.722 47.619 20.67 0.78 0.00 2.66
1969 2059 1.933853 CCGTCGATCCATGGAAAAGTC 59.066 52.381 20.67 10.87 0.00 3.01
1970 2060 1.933853 CGTCGATCCATGGAAAAGTCC 59.066 52.381 20.67 4.07 45.21 3.85
1971 2061 2.418746 CGTCGATCCATGGAAAAGTCCT 60.419 50.000 20.67 0.00 45.22 3.85
1972 2062 3.198872 GTCGATCCATGGAAAAGTCCTC 58.801 50.000 20.67 8.90 45.22 3.71
1973 2063 3.107601 TCGATCCATGGAAAAGTCCTCT 58.892 45.455 20.67 0.00 45.22 3.69
1974 2064 3.133003 TCGATCCATGGAAAAGTCCTCTC 59.867 47.826 20.67 7.34 45.22 3.20
1975 2065 3.118629 CGATCCATGGAAAAGTCCTCTCA 60.119 47.826 20.67 0.00 45.22 3.27
1976 2066 3.988976 TCCATGGAAAAGTCCTCTCAG 57.011 47.619 13.46 0.00 45.22 3.35
1977 2067 3.520696 TCCATGGAAAAGTCCTCTCAGA 58.479 45.455 13.46 0.00 45.22 3.27
1978 2068 3.909995 TCCATGGAAAAGTCCTCTCAGAA 59.090 43.478 13.46 0.00 45.22 3.02
1979 2069 4.350816 TCCATGGAAAAGTCCTCTCAGAAA 59.649 41.667 13.46 0.00 45.22 2.52
1980 2070 5.014544 TCCATGGAAAAGTCCTCTCAGAAAT 59.985 40.000 13.46 0.00 45.22 2.17
1981 2071 6.215431 TCCATGGAAAAGTCCTCTCAGAAATA 59.785 38.462 13.46 0.00 45.22 1.40
1982 2072 7.059156 CCATGGAAAAGTCCTCTCAGAAATAT 58.941 38.462 5.56 0.00 45.22 1.28
1983 2073 7.559170 CCATGGAAAAGTCCTCTCAGAAATATT 59.441 37.037 5.56 0.00 45.22 1.28
1984 2074 8.619546 CATGGAAAAGTCCTCTCAGAAATATTC 58.380 37.037 0.00 0.00 45.22 1.75
1985 2075 7.922382 TGGAAAAGTCCTCTCAGAAATATTCT 58.078 34.615 0.00 0.00 45.22 2.40
1986 2076 9.046846 TGGAAAAGTCCTCTCAGAAATATTCTA 57.953 33.333 0.00 0.00 45.22 2.10
1987 2077 9.320352 GGAAAAGTCCTCTCAGAAATATTCTAC 57.680 37.037 0.00 0.00 41.24 2.59
1989 2079 9.883142 AAAAGTCCTCTCAGAAATATTCTACTG 57.117 33.333 9.51 9.51 38.11 2.74
1990 2080 8.602472 AAGTCCTCTCAGAAATATTCTACTGT 57.398 34.615 13.21 0.00 38.11 3.55
1991 2081 9.702253 AAGTCCTCTCAGAAATATTCTACTGTA 57.298 33.333 13.21 0.00 38.11 2.74
1992 2082 9.875708 AGTCCTCTCAGAAATATTCTACTGTAT 57.124 33.333 13.21 0.00 38.11 2.29
2006 2096 8.615878 ATTCTACTGTATTAGTTTTGCACACA 57.384 30.769 0.00 0.00 40.89 3.72
2007 2097 8.615878 TTCTACTGTATTAGTTTTGCACACAT 57.384 30.769 0.00 0.00 40.89 3.21
2008 2098 9.713713 TTCTACTGTATTAGTTTTGCACACATA 57.286 29.630 0.00 0.00 40.89 2.29
2009 2099 9.366216 TCTACTGTATTAGTTTTGCACACATAG 57.634 33.333 0.00 0.00 40.89 2.23
2010 2100 7.377766 ACTGTATTAGTTTTGCACACATAGG 57.622 36.000 0.00 0.00 35.67 2.57
2011 2101 6.128007 ACTGTATTAGTTTTGCACACATAGGC 60.128 38.462 0.00 0.00 35.67 3.93
2012 2102 5.707764 TGTATTAGTTTTGCACACATAGGCA 59.292 36.000 0.00 0.00 38.46 4.75
2020 2110 5.720371 TTGCACACATAGGCAAACTAATT 57.280 34.783 0.00 0.00 46.11 1.40
2021 2111 6.825944 TTGCACACATAGGCAAACTAATTA 57.174 33.333 0.00 0.00 46.11 1.40
2022 2112 7.403312 TTGCACACATAGGCAAACTAATTAT 57.597 32.000 0.00 0.00 46.11 1.28
2023 2113 8.512966 TTGCACACATAGGCAAACTAATTATA 57.487 30.769 0.00 0.00 46.11 0.98
2024 2114 8.512966 TGCACACATAGGCAAACTAATTATAA 57.487 30.769 0.00 0.00 37.03 0.98
2025 2115 8.402472 TGCACACATAGGCAAACTAATTATAAC 58.598 33.333 0.00 0.00 37.03 1.89
2026 2116 8.402472 GCACACATAGGCAAACTAATTATAACA 58.598 33.333 0.00 0.00 34.79 2.41
2086 2176 6.727824 AATTCACTGGTATAATATGAGCGC 57.272 37.500 0.00 0.00 0.00 5.92
2087 2177 4.188247 TCACTGGTATAATATGAGCGCC 57.812 45.455 2.29 0.00 0.00 6.53
2088 2178 3.832490 TCACTGGTATAATATGAGCGCCT 59.168 43.478 2.29 0.00 0.00 5.52
2089 2179 5.014202 TCACTGGTATAATATGAGCGCCTA 58.986 41.667 2.29 0.00 0.00 3.93
2090 2180 5.125578 TCACTGGTATAATATGAGCGCCTAG 59.874 44.000 2.29 0.00 0.00 3.02
2091 2181 5.125578 CACTGGTATAATATGAGCGCCTAGA 59.874 44.000 2.29 0.00 0.00 2.43
2092 2182 5.715279 ACTGGTATAATATGAGCGCCTAGAA 59.285 40.000 2.29 0.00 0.00 2.10
2093 2183 6.210784 ACTGGTATAATATGAGCGCCTAGAAA 59.789 38.462 2.29 0.00 0.00 2.52
2094 2184 6.999950 TGGTATAATATGAGCGCCTAGAAAA 58.000 36.000 2.29 0.00 0.00 2.29
2095 2185 7.446769 TGGTATAATATGAGCGCCTAGAAAAA 58.553 34.615 2.29 0.00 0.00 1.94
2129 2219 8.644318 GGATTCAATCCTCTGAATTTTCAATG 57.356 34.615 9.43 0.00 44.29 2.82
2130 2220 8.472413 GGATTCAATCCTCTGAATTTTCAATGA 58.528 33.333 9.43 0.00 44.29 2.57
2131 2221 9.865321 GATTCAATCCTCTGAATTTTCAATGAA 57.135 29.630 0.00 0.00 44.29 2.57
2176 2266 5.878133 CGTAAGGTGGACTAGAAAGACTAC 58.122 45.833 0.00 0.00 0.00 2.73
2177 2267 5.413833 CGTAAGGTGGACTAGAAAGACTACA 59.586 44.000 0.00 0.00 32.09 2.74
2178 2268 6.072286 CGTAAGGTGGACTAGAAAGACTACAA 60.072 42.308 0.00 0.00 32.09 2.41
2179 2269 6.936968 AAGGTGGACTAGAAAGACTACAAT 57.063 37.500 0.00 0.00 32.09 2.71
2180 2270 6.287589 AGGTGGACTAGAAAGACTACAATG 57.712 41.667 0.00 0.00 32.09 2.82
2181 2271 5.187967 AGGTGGACTAGAAAGACTACAATGG 59.812 44.000 0.00 0.00 32.09 3.16
2182 2272 4.870991 GTGGACTAGAAAGACTACAATGGC 59.129 45.833 0.00 0.00 31.12 4.40
2183 2273 4.081087 TGGACTAGAAAGACTACAATGGCC 60.081 45.833 0.00 0.00 0.00 5.36
2184 2274 4.081087 GGACTAGAAAGACTACAATGGCCA 60.081 45.833 8.56 8.56 0.00 5.36
2185 2275 4.833390 ACTAGAAAGACTACAATGGCCAC 58.167 43.478 8.16 0.00 0.00 5.01
2186 2276 2.699954 AGAAAGACTACAATGGCCACG 58.300 47.619 8.16 4.64 0.00 4.94
2187 2277 2.301870 AGAAAGACTACAATGGCCACGA 59.698 45.455 8.16 0.00 0.00 4.35
2188 2278 3.055094 AGAAAGACTACAATGGCCACGAT 60.055 43.478 8.16 0.00 0.00 3.73
2189 2279 3.350219 AAGACTACAATGGCCACGATT 57.650 42.857 8.16 0.00 0.00 3.34
2190 2280 4.481368 AAGACTACAATGGCCACGATTA 57.519 40.909 8.16 0.00 0.00 1.75
2191 2281 4.689612 AGACTACAATGGCCACGATTAT 57.310 40.909 8.16 0.00 0.00 1.28
2192 2282 5.036117 AGACTACAATGGCCACGATTATT 57.964 39.130 8.16 0.00 0.00 1.40
2193 2283 6.169557 AGACTACAATGGCCACGATTATTA 57.830 37.500 8.16 0.00 0.00 0.98
2194 2284 6.769512 AGACTACAATGGCCACGATTATTAT 58.230 36.000 8.16 0.00 0.00 1.28
2195 2285 6.874134 AGACTACAATGGCCACGATTATTATC 59.126 38.462 8.16 0.00 0.00 1.75
2196 2286 6.530120 ACTACAATGGCCACGATTATTATCA 58.470 36.000 8.16 0.00 0.00 2.15
2197 2287 6.995686 ACTACAATGGCCACGATTATTATCAA 59.004 34.615 8.16 0.00 0.00 2.57
2198 2288 6.707440 ACAATGGCCACGATTATTATCAAA 57.293 33.333 8.16 0.00 0.00 2.69
2199 2289 7.106439 ACAATGGCCACGATTATTATCAAAA 57.894 32.000 8.16 0.00 0.00 2.44
2200 2290 7.202526 ACAATGGCCACGATTATTATCAAAAG 58.797 34.615 8.16 0.00 0.00 2.27
2201 2291 6.959639 ATGGCCACGATTATTATCAAAAGT 57.040 33.333 8.16 0.00 0.00 2.66
2202 2292 6.130298 TGGCCACGATTATTATCAAAAGTG 57.870 37.500 0.00 0.00 0.00 3.16
2204 2294 5.067283 GGCCACGATTATTATCAAAAGTGGT 59.933 40.000 14.14 0.00 46.75 4.16
2205 2295 6.405397 GGCCACGATTATTATCAAAAGTGGTT 60.405 38.462 14.14 0.00 46.75 3.67
2206 2296 6.472163 GCCACGATTATTATCAAAAGTGGTTG 59.528 38.462 14.14 0.00 46.75 3.77
2207 2297 7.627513 GCCACGATTATTATCAAAAGTGGTTGA 60.628 37.037 14.14 0.00 46.75 3.18
2219 2309 8.755696 TCAAAAGTGGTTGATATTTGTTATGC 57.244 30.769 0.00 0.00 32.56 3.14
2220 2310 8.363390 TCAAAAGTGGTTGATATTTGTTATGCA 58.637 29.630 0.00 0.00 32.56 3.96
2221 2311 8.434661 CAAAAGTGGTTGATATTTGTTATGCAC 58.565 33.333 0.00 0.00 0.00 4.57
2222 2312 7.466746 AAGTGGTTGATATTTGTTATGCACT 57.533 32.000 0.00 0.00 0.00 4.40
2223 2313 8.574251 AAGTGGTTGATATTTGTTATGCACTA 57.426 30.769 0.00 0.00 0.00 2.74
2224 2314 8.752005 AGTGGTTGATATTTGTTATGCACTAT 57.248 30.769 0.00 0.00 0.00 2.12
2225 2315 9.189156 AGTGGTTGATATTTGTTATGCACTATT 57.811 29.630 0.00 0.00 0.00 1.73
2226 2316 9.801873 GTGGTTGATATTTGTTATGCACTATTT 57.198 29.630 0.00 0.00 0.00 1.40
2252 2342 9.569122 TTGACTACAAATAATAGGAAATAGGCC 57.431 33.333 0.00 0.00 32.73 5.19
2253 2343 8.719596 TGACTACAAATAATAGGAAATAGGCCA 58.280 33.333 5.01 0.00 0.00 5.36
2254 2344 9.569122 GACTACAAATAATAGGAAATAGGCCAA 57.431 33.333 5.01 0.00 0.00 4.52
2255 2345 9.930158 ACTACAAATAATAGGAAATAGGCCAAA 57.070 29.630 5.01 0.00 0.00 3.28
2257 2347 8.602472 ACAAATAATAGGAAATAGGCCAAACA 57.398 30.769 5.01 0.00 0.00 2.83
2258 2348 9.212593 ACAAATAATAGGAAATAGGCCAAACAT 57.787 29.630 5.01 0.00 0.00 2.71
2267 2357 8.914011 AGGAAATAGGCCAAACATTTAATAGAC 58.086 33.333 5.01 0.00 0.00 2.59
2268 2358 8.914011 GGAAATAGGCCAAACATTTAATAGACT 58.086 33.333 5.01 0.00 0.00 3.24
2269 2359 9.952188 GAAATAGGCCAAACATTTAATAGACTC 57.048 33.333 5.01 0.00 0.00 3.36
2270 2360 7.730364 ATAGGCCAAACATTTAATAGACTCG 57.270 36.000 5.01 0.00 0.00 4.18
2271 2361 4.881850 AGGCCAAACATTTAATAGACTCGG 59.118 41.667 5.01 0.00 0.00 4.63
2272 2362 4.879545 GGCCAAACATTTAATAGACTCGGA 59.120 41.667 0.00 0.00 0.00 4.55
2273 2363 5.007724 GGCCAAACATTTAATAGACTCGGAG 59.992 44.000 2.83 2.83 0.00 4.63
2274 2364 5.815740 GCCAAACATTTAATAGACTCGGAGA 59.184 40.000 12.86 0.00 0.00 3.71
2285 2375 2.362503 TCGGAGAGGATGTGGCGT 60.363 61.111 0.00 0.00 0.00 5.68
2286 2376 2.202797 CGGAGAGGATGTGGCGTG 60.203 66.667 0.00 0.00 0.00 5.34
2287 2377 2.512515 GGAGAGGATGTGGCGTGC 60.513 66.667 0.00 0.00 0.00 5.34
2288 2378 2.265739 GAGAGGATGTGGCGTGCA 59.734 61.111 0.00 0.00 0.00 4.57
2289 2379 1.375908 GAGAGGATGTGGCGTGCAA 60.376 57.895 0.00 0.00 0.00 4.08
2290 2380 0.745845 GAGAGGATGTGGCGTGCAAT 60.746 55.000 0.00 0.00 0.00 3.56
2291 2381 1.028330 AGAGGATGTGGCGTGCAATG 61.028 55.000 0.00 0.00 0.00 2.82
2292 2382 1.996786 GAGGATGTGGCGTGCAATGG 61.997 60.000 0.00 0.00 0.00 3.16
2293 2383 2.342650 GGATGTGGCGTGCAATGGT 61.343 57.895 0.00 0.00 0.00 3.55
2294 2384 1.153978 GATGTGGCGTGCAATGGTG 60.154 57.895 0.00 0.00 0.00 4.17
2295 2385 1.865788 GATGTGGCGTGCAATGGTGT 61.866 55.000 0.00 0.00 0.00 4.16
2296 2386 1.462731 ATGTGGCGTGCAATGGTGTT 61.463 50.000 0.00 0.00 0.00 3.32
2297 2387 1.661197 GTGGCGTGCAATGGTGTTG 60.661 57.895 0.00 0.00 0.00 3.33
2298 2388 2.049248 GGCGTGCAATGGTGTTGG 60.049 61.111 0.00 0.00 0.00 3.77
2299 2389 2.560119 GGCGTGCAATGGTGTTGGA 61.560 57.895 0.00 0.00 0.00 3.53
2300 2390 1.081242 GCGTGCAATGGTGTTGGAG 60.081 57.895 0.00 0.00 0.00 3.86
2301 2391 1.795170 GCGTGCAATGGTGTTGGAGT 61.795 55.000 0.00 0.00 0.00 3.85
2302 2392 1.518325 CGTGCAATGGTGTTGGAGTA 58.482 50.000 0.00 0.00 0.00 2.59
2303 2393 1.464608 CGTGCAATGGTGTTGGAGTAG 59.535 52.381 0.00 0.00 0.00 2.57
2304 2394 1.812571 GTGCAATGGTGTTGGAGTAGG 59.187 52.381 0.00 0.00 0.00 3.18
2305 2395 0.811281 GCAATGGTGTTGGAGTAGGC 59.189 55.000 0.00 0.00 0.00 3.93
2306 2396 1.886222 GCAATGGTGTTGGAGTAGGCA 60.886 52.381 0.00 0.00 0.00 4.75
2307 2397 2.086869 CAATGGTGTTGGAGTAGGCAG 58.913 52.381 0.00 0.00 0.00 4.85
2308 2398 1.656587 ATGGTGTTGGAGTAGGCAGA 58.343 50.000 0.00 0.00 0.00 4.26
2309 2399 0.685097 TGGTGTTGGAGTAGGCAGAC 59.315 55.000 0.00 0.00 0.00 3.51
2310 2400 0.389948 GGTGTTGGAGTAGGCAGACG 60.390 60.000 0.00 0.00 0.00 4.18
2311 2401 0.389948 GTGTTGGAGTAGGCAGACGG 60.390 60.000 0.00 0.00 0.00 4.79
2312 2402 0.830444 TGTTGGAGTAGGCAGACGGT 60.830 55.000 0.00 0.00 0.00 4.83
2313 2403 0.108756 GTTGGAGTAGGCAGACGGTC 60.109 60.000 0.00 0.00 0.00 4.79
2314 2404 1.592400 TTGGAGTAGGCAGACGGTCG 61.592 60.000 1.89 0.00 0.00 4.79
2315 2405 2.772691 GGAGTAGGCAGACGGTCGG 61.773 68.421 3.79 3.79 0.00 4.79
2316 2406 1.748122 GAGTAGGCAGACGGTCGGA 60.748 63.158 12.54 0.00 0.00 4.55
2317 2407 1.716826 GAGTAGGCAGACGGTCGGAG 61.717 65.000 12.54 3.43 0.00 4.63
2318 2408 2.045131 GTAGGCAGACGGTCGGAGT 61.045 63.158 12.54 0.70 0.00 3.85
2319 2409 0.745845 GTAGGCAGACGGTCGGAGTA 60.746 60.000 12.54 0.00 0.00 2.59
2320 2410 0.463295 TAGGCAGACGGTCGGAGTAG 60.463 60.000 12.54 0.00 0.00 2.57
2321 2411 1.748122 GGCAGACGGTCGGAGTAGA 60.748 63.158 12.54 0.00 0.00 2.59
2322 2412 1.428620 GCAGACGGTCGGAGTAGAC 59.571 63.158 12.54 0.00 40.25 2.59
2323 2413 1.714414 CAGACGGTCGGAGTAGACG 59.286 63.158 1.81 0.00 41.81 4.18
2324 2414 1.018226 CAGACGGTCGGAGTAGACGT 61.018 60.000 1.81 0.00 41.81 4.34
2325 2415 1.018226 AGACGGTCGGAGTAGACGTG 61.018 60.000 0.00 0.00 41.81 4.49
2326 2416 1.975363 GACGGTCGGAGTAGACGTGG 61.975 65.000 0.00 0.00 41.81 4.94
2327 2417 2.488820 GGTCGGAGTAGACGTGGC 59.511 66.667 0.00 0.00 41.81 5.01
2328 2418 2.338015 GGTCGGAGTAGACGTGGCA 61.338 63.158 0.00 0.00 41.81 4.92
2329 2419 1.154073 GTCGGAGTAGACGTGGCAC 60.154 63.158 7.79 7.79 0.00 5.01
2341 2431 4.555709 TGGCACGTTGACCCGCTT 62.556 61.111 0.00 0.00 0.00 4.68
2342 2432 2.357760 GGCACGTTGACCCGCTTA 60.358 61.111 0.00 0.00 0.00 3.09
2343 2433 1.743995 GGCACGTTGACCCGCTTAT 60.744 57.895 0.00 0.00 0.00 1.73
2344 2434 0.460635 GGCACGTTGACCCGCTTATA 60.461 55.000 0.00 0.00 0.00 0.98
2345 2435 1.578583 GCACGTTGACCCGCTTATAT 58.421 50.000 0.00 0.00 0.00 0.86
2346 2436 2.546373 GGCACGTTGACCCGCTTATATA 60.546 50.000 0.00 0.00 0.00 0.86
2347 2437 3.323243 GCACGTTGACCCGCTTATATAT 58.677 45.455 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.122277 TCTCATCCACAAAATCCCAATCTAC 58.878 40.000 0.00 0.00 0.00 2.59
25 26 5.050499 CGATTCACAGCACTTGAGGAATATC 60.050 44.000 0.00 0.00 35.80 1.63
27 28 4.183865 CGATTCACAGCACTTGAGGAATA 58.816 43.478 0.00 0.00 35.80 1.75
94 98 4.449068 ACAATGCTAGTCAAAGACGACTTG 59.551 41.667 0.00 0.00 43.84 3.16
97 101 3.741344 ACACAATGCTAGTCAAAGACGAC 59.259 43.478 0.00 0.00 37.67 4.34
100 104 6.647067 AGAAGTACACAATGCTAGTCAAAGAC 59.353 38.462 0.00 0.00 0.00 3.01
139 143 6.674573 ACTAATCACTCCCTTAGCTAGAAGA 58.325 40.000 0.00 0.00 0.00 2.87
142 146 8.060075 AGTTTACTAATCACTCCCTTAGCTAGA 58.940 37.037 0.00 0.00 0.00 2.43
184 188 1.748493 TGTTCTTGCCAGAAAAAGCGT 59.252 42.857 1.10 0.00 40.90 5.07
268 272 1.856873 ATCTTTCACCCCCAGGCCA 60.857 57.895 5.01 0.00 36.11 5.36
292 296 7.168219 TGGTGAGCAGACTTATATTCTGTTTT 58.832 34.615 11.60 1.77 42.26 2.43
403 407 5.254032 AGAGTCCCCAAATCTGGTCTTAATT 59.746 40.000 0.00 0.00 41.72 1.40
482 486 6.348213 GCAACATTACCAGAGTTCACGTTTAT 60.348 38.462 0.00 0.00 0.00 1.40
486 490 2.806244 GCAACATTACCAGAGTTCACGT 59.194 45.455 0.00 0.00 0.00 4.49
488 492 3.146066 TGGCAACATTACCAGAGTTCAC 58.854 45.455 0.00 0.00 46.17 3.18
503 507 1.327303 TCCAACCACAATCTGGCAAC 58.673 50.000 0.00 0.00 45.32 4.17
577 581 6.036083 CCACCGTAATCTCTTGATTGTTACAG 59.964 42.308 1.97 0.00 42.34 2.74
583 587 2.285220 CGCCACCGTAATCTCTTGATTG 59.715 50.000 1.97 0.00 42.34 2.67
604 608 3.604582 CTCCACATTCTCCCTGAACTTC 58.395 50.000 0.00 0.00 37.52 3.01
696 700 0.177141 TTCGGATAAGGGCCAGTTCG 59.823 55.000 6.18 1.16 0.00 3.95
698 702 1.580059 TCTTCGGATAAGGGCCAGTT 58.420 50.000 6.18 0.00 0.00 3.16
712 716 5.391310 CCAAACAACCTGATCTGAATCTTCG 60.391 44.000 0.38 0.00 32.75 3.79
713 717 5.474876 ACCAAACAACCTGATCTGAATCTTC 59.525 40.000 0.38 0.00 32.75 2.87
715 719 4.990526 ACCAAACAACCTGATCTGAATCT 58.009 39.130 0.38 0.00 32.75 2.40
719 723 2.224769 GGGACCAAACAACCTGATCTGA 60.225 50.000 0.38 0.00 0.00 3.27
770 775 4.458989 GCCTCTCCAAATGTTCATACACAA 59.541 41.667 0.00 0.00 37.03 3.33
774 779 2.952310 GGGCCTCTCCAAATGTTCATAC 59.048 50.000 0.84 0.00 36.21 2.39
781 786 0.179006 GCTAGGGGCCTCTCCAAATG 60.179 60.000 9.55 0.00 36.21 2.32
804 809 7.015098 TCTCTCCAAATCCATTTAAAGTTGCAA 59.985 33.333 0.00 0.00 0.00 4.08
853 858 5.220643 CCTGAAACAATTGCCACAAAAAGAC 60.221 40.000 5.05 0.00 0.00 3.01
981 986 5.368145 CACATAACTCTAGCAATAGGGCAA 58.632 41.667 0.00 0.00 35.83 4.52
988 993 6.070538 ACTGTTCTCCACATAACTCTAGCAAT 60.071 38.462 0.00 0.00 33.76 3.56
1045 1050 3.900941 CAAAGTATTGCCACAGGTTGTC 58.099 45.455 0.00 0.00 0.00 3.18
1078 1083 3.381335 TCTCACCATTAGGGAGGTAACC 58.619 50.000 0.00 0.00 41.15 2.85
1090 1095 6.150474 CCAAACGTATAAAACCTCTCACCATT 59.850 38.462 0.00 0.00 0.00 3.16
1298 1303 0.792640 CCTCATCATATTCGCGGCAC 59.207 55.000 6.13 0.00 0.00 5.01
1303 1308 4.023792 TGCACAAATCCTCATCATATTCGC 60.024 41.667 0.00 0.00 0.00 4.70
1308 1313 4.132336 GAGCTGCACAAATCCTCATCATA 58.868 43.478 1.02 0.00 0.00 2.15
1320 1325 0.108472 CATCTCTCGGAGCTGCACAA 60.108 55.000 5.91 0.00 0.00 3.33
1329 1334 2.897436 CTTCATGTTGCATCTCTCGGA 58.103 47.619 0.00 0.00 0.00 4.55
1341 1346 1.000274 GCTTTTCACCCGCTTCATGTT 60.000 47.619 0.00 0.00 0.00 2.71
1345 1350 1.172180 CCAGCTTTTCACCCGCTTCA 61.172 55.000 0.00 0.00 0.00 3.02
1347 1352 0.890996 CTCCAGCTTTTCACCCGCTT 60.891 55.000 0.00 0.00 0.00 4.68
1367 1373 0.605589 CGGGATACAGGAGCCATCTC 59.394 60.000 0.00 0.00 34.10 2.75
1394 1453 0.031857 CAAAACGCCAACCTCATGCA 59.968 50.000 0.00 0.00 0.00 3.96
1460 1519 2.985847 GCCACCCACACAGAAGCC 60.986 66.667 0.00 0.00 0.00 4.35
1465 1524 0.107508 CAGATAGGCCACCCACACAG 60.108 60.000 5.01 0.00 0.00 3.66
1500 1559 3.181485 GCTACGACCAGAATAGTTCAGCT 60.181 47.826 0.00 0.00 0.00 4.24
1509 1569 5.363005 ACACCTAATAAGCTACGACCAGAAT 59.637 40.000 0.00 0.00 0.00 2.40
1525 1588 2.433436 GAAAACCCAGCGACACCTAAT 58.567 47.619 0.00 0.00 0.00 1.73
1605 1690 0.178301 CTAGAAAGGGGAAGCGGGTC 59.822 60.000 0.00 0.00 0.00 4.46
1630 1715 9.912634 GAAATAACATCAGTTTGAAAGATCCAA 57.087 29.630 0.00 0.00 39.15 3.53
1697 1787 4.414337 TTTTGGGATGGTTGGTTCTTTG 57.586 40.909 0.00 0.00 0.00 2.77
1701 1791 3.494223 CCAGTTTTTGGGATGGTTGGTTC 60.494 47.826 0.00 0.00 43.75 3.62
1702 1792 2.437651 CCAGTTTTTGGGATGGTTGGTT 59.562 45.455 0.00 0.00 43.75 3.67
1703 1793 2.046292 CCAGTTTTTGGGATGGTTGGT 58.954 47.619 0.00 0.00 43.75 3.67
1704 1794 2.837532 CCAGTTTTTGGGATGGTTGG 57.162 50.000 0.00 0.00 43.75 3.77
1714 1804 1.343142 GGTAAGTGGGCCCAGTTTTTG 59.657 52.381 42.51 0.00 39.87 2.44
1715 1805 1.712056 GGTAAGTGGGCCCAGTTTTT 58.288 50.000 42.51 25.99 39.87 1.94
1716 1806 0.538746 CGGTAAGTGGGCCCAGTTTT 60.539 55.000 42.51 29.38 39.87 2.43
1717 1807 1.074248 CGGTAAGTGGGCCCAGTTT 59.926 57.895 42.51 31.66 39.87 2.66
1718 1808 2.120737 GACGGTAAGTGGGCCCAGTT 62.121 60.000 40.02 40.02 41.79 3.16
1719 1809 2.528378 ACGGTAAGTGGGCCCAGT 60.528 61.111 29.55 28.49 0.00 4.00
1720 1810 2.119484 TTGACGGTAAGTGGGCCCAG 62.119 60.000 29.55 15.69 0.00 4.45
1721 1811 1.706995 TTTGACGGTAAGTGGGCCCA 61.707 55.000 24.45 24.45 0.00 5.36
1722 1812 0.537828 TTTTGACGGTAAGTGGGCCC 60.538 55.000 17.59 17.59 0.00 5.80
1723 1813 0.594602 GTTTTGACGGTAAGTGGGCC 59.405 55.000 0.00 0.00 0.00 5.80
1724 1814 1.265905 CTGTTTTGACGGTAAGTGGGC 59.734 52.381 0.00 0.00 0.00 5.36
1725 1815 1.265905 GCTGTTTTGACGGTAAGTGGG 59.734 52.381 0.00 0.00 0.00 4.61
1726 1816 1.265905 GGCTGTTTTGACGGTAAGTGG 59.734 52.381 0.00 0.00 0.00 4.00
1727 1817 1.265905 GGGCTGTTTTGACGGTAAGTG 59.734 52.381 0.00 0.00 0.00 3.16
1728 1818 1.601166 GGGCTGTTTTGACGGTAAGT 58.399 50.000 0.00 0.00 0.00 2.24
1729 1819 0.879090 GGGGCTGTTTTGACGGTAAG 59.121 55.000 0.00 0.00 0.00 2.34
1730 1820 0.885596 CGGGGCTGTTTTGACGGTAA 60.886 55.000 0.00 0.00 0.00 2.85
1731 1821 1.301874 CGGGGCTGTTTTGACGGTA 60.302 57.895 0.00 0.00 0.00 4.02
1732 1822 2.406002 ATCGGGGCTGTTTTGACGGT 62.406 55.000 0.00 0.00 0.00 4.83
1733 1823 1.241315 AATCGGGGCTGTTTTGACGG 61.241 55.000 0.00 0.00 0.00 4.79
1734 1824 1.444836 TAATCGGGGCTGTTTTGACG 58.555 50.000 0.00 0.00 0.00 4.35
1735 1825 2.094906 GGTTAATCGGGGCTGTTTTGAC 60.095 50.000 0.00 0.00 0.00 3.18
1736 1826 2.164338 GGTTAATCGGGGCTGTTTTGA 58.836 47.619 0.00 0.00 0.00 2.69
1737 1827 2.094752 CAGGTTAATCGGGGCTGTTTTG 60.095 50.000 0.00 0.00 0.00 2.44
1738 1828 2.167662 CAGGTTAATCGGGGCTGTTTT 58.832 47.619 0.00 0.00 0.00 2.43
1739 1829 1.353022 TCAGGTTAATCGGGGCTGTTT 59.647 47.619 0.00 0.00 0.00 2.83
1740 1830 0.988832 TCAGGTTAATCGGGGCTGTT 59.011 50.000 0.00 0.00 0.00 3.16
1741 1831 0.252197 GTCAGGTTAATCGGGGCTGT 59.748 55.000 0.00 0.00 0.00 4.40
1742 1832 0.810031 CGTCAGGTTAATCGGGGCTG 60.810 60.000 0.00 0.00 0.00 4.85
1743 1833 1.520666 CGTCAGGTTAATCGGGGCT 59.479 57.895 0.00 0.00 0.00 5.19
1744 1834 2.178235 GCGTCAGGTTAATCGGGGC 61.178 63.158 0.00 0.00 0.00 5.80
1745 1835 1.523032 GGCGTCAGGTTAATCGGGG 60.523 63.158 0.00 0.00 0.00 5.73
1746 1836 1.523032 GGGCGTCAGGTTAATCGGG 60.523 63.158 0.00 0.00 0.00 5.14
1747 1837 0.529992 GAGGGCGTCAGGTTAATCGG 60.530 60.000 1.64 0.00 0.00 4.18
1748 1838 0.174845 TGAGGGCGTCAGGTTAATCG 59.825 55.000 5.66 0.00 0.00 3.34
1749 1839 2.622064 ATGAGGGCGTCAGGTTAATC 57.378 50.000 15.69 0.00 39.07 1.75
1750 1840 3.279434 GAAATGAGGGCGTCAGGTTAAT 58.721 45.455 15.69 0.00 39.07 1.40
1751 1841 2.617021 GGAAATGAGGGCGTCAGGTTAA 60.617 50.000 15.69 0.00 39.07 2.01
1752 1842 1.065709 GGAAATGAGGGCGTCAGGTTA 60.066 52.381 15.69 0.00 39.07 2.85
1753 1843 0.322546 GGAAATGAGGGCGTCAGGTT 60.323 55.000 15.69 11.58 39.07 3.50
1754 1844 1.201429 AGGAAATGAGGGCGTCAGGT 61.201 55.000 15.69 5.63 39.07 4.00
1755 1845 0.745845 CAGGAAATGAGGGCGTCAGG 60.746 60.000 15.69 0.00 39.07 3.86
1756 1846 0.745845 CCAGGAAATGAGGGCGTCAG 60.746 60.000 15.69 0.78 39.07 3.51
1757 1847 1.299648 CCAGGAAATGAGGGCGTCA 59.700 57.895 12.80 12.80 40.38 4.35
1758 1848 1.452108 CCCAGGAAATGAGGGCGTC 60.452 63.158 0.00 0.00 35.44 5.19
1759 1849 1.915078 CTCCCAGGAAATGAGGGCGT 61.915 60.000 0.00 0.00 42.52 5.68
1760 1850 1.153086 CTCCCAGGAAATGAGGGCG 60.153 63.158 0.00 0.00 42.52 6.13
1761 1851 1.454663 GCTCCCAGGAAATGAGGGC 60.455 63.158 0.00 0.00 42.52 5.19
1762 1852 0.627986 AAGCTCCCAGGAAATGAGGG 59.372 55.000 0.00 0.00 44.22 4.30
1763 1853 2.507471 ACTAAGCTCCCAGGAAATGAGG 59.493 50.000 0.00 0.00 0.00 3.86
1764 1854 3.922171 ACTAAGCTCCCAGGAAATGAG 57.078 47.619 0.00 0.00 0.00 2.90
1765 1855 3.132289 CGTACTAAGCTCCCAGGAAATGA 59.868 47.826 0.00 0.00 0.00 2.57
1766 1856 3.118738 ACGTACTAAGCTCCCAGGAAATG 60.119 47.826 0.00 0.00 0.00 2.32
1767 1857 3.105283 ACGTACTAAGCTCCCAGGAAAT 58.895 45.455 0.00 0.00 0.00 2.17
1768 1858 2.232941 CACGTACTAAGCTCCCAGGAAA 59.767 50.000 0.00 0.00 0.00 3.13
1769 1859 1.822990 CACGTACTAAGCTCCCAGGAA 59.177 52.381 0.00 0.00 0.00 3.36
1770 1860 1.272313 ACACGTACTAAGCTCCCAGGA 60.272 52.381 0.00 0.00 0.00 3.86
1771 1861 1.183549 ACACGTACTAAGCTCCCAGG 58.816 55.000 0.00 0.00 0.00 4.45
1772 1862 3.015327 ACTACACGTACTAAGCTCCCAG 58.985 50.000 0.00 0.00 0.00 4.45
1773 1863 2.751259 CACTACACGTACTAAGCTCCCA 59.249 50.000 0.00 0.00 0.00 4.37
1774 1864 3.012518 TCACTACACGTACTAAGCTCCC 58.987 50.000 0.00 0.00 0.00 4.30
1775 1865 4.897025 ATCACTACACGTACTAAGCTCC 57.103 45.455 0.00 0.00 0.00 4.70
1776 1866 7.244166 TCTTATCACTACACGTACTAAGCTC 57.756 40.000 0.00 0.00 0.00 4.09
1777 1867 6.238429 GCTCTTATCACTACACGTACTAAGCT 60.238 42.308 0.00 0.00 0.00 3.74
1778 1868 5.908499 GCTCTTATCACTACACGTACTAAGC 59.092 44.000 0.00 0.00 0.00 3.09
1779 1869 6.037940 TGGCTCTTATCACTACACGTACTAAG 59.962 42.308 0.00 0.00 0.00 2.18
1780 1870 5.882000 TGGCTCTTATCACTACACGTACTAA 59.118 40.000 0.00 0.00 0.00 2.24
1781 1871 5.430886 TGGCTCTTATCACTACACGTACTA 58.569 41.667 0.00 0.00 0.00 1.82
1782 1872 4.267536 TGGCTCTTATCACTACACGTACT 58.732 43.478 0.00 0.00 0.00 2.73
1783 1873 4.627611 TGGCTCTTATCACTACACGTAC 57.372 45.455 0.00 0.00 0.00 3.67
1784 1874 4.885325 TGATGGCTCTTATCACTACACGTA 59.115 41.667 0.00 0.00 30.03 3.57
1785 1875 3.699538 TGATGGCTCTTATCACTACACGT 59.300 43.478 0.00 0.00 30.03 4.49
1786 1876 4.202060 ACTGATGGCTCTTATCACTACACG 60.202 45.833 0.00 0.00 31.66 4.49
1787 1877 5.269505 ACTGATGGCTCTTATCACTACAC 57.730 43.478 0.00 0.00 31.66 2.90
1788 1878 5.187772 ACAACTGATGGCTCTTATCACTACA 59.812 40.000 0.00 0.00 31.66 2.74
1789 1879 5.521735 CACAACTGATGGCTCTTATCACTAC 59.478 44.000 0.00 0.00 31.66 2.73
1790 1880 5.187772 ACACAACTGATGGCTCTTATCACTA 59.812 40.000 0.00 0.00 31.66 2.74
1791 1881 4.019860 ACACAACTGATGGCTCTTATCACT 60.020 41.667 0.00 0.00 31.66 3.41
1792 1882 4.256920 ACACAACTGATGGCTCTTATCAC 58.743 43.478 0.00 0.00 31.66 3.06
1793 1883 4.558226 ACACAACTGATGGCTCTTATCA 57.442 40.909 0.00 0.00 33.76 2.15
1794 1884 4.095483 CCAACACAACTGATGGCTCTTATC 59.905 45.833 0.00 0.00 33.87 1.75
1795 1885 4.012374 CCAACACAACTGATGGCTCTTAT 58.988 43.478 0.00 0.00 33.87 1.73
1796 1886 3.411446 CCAACACAACTGATGGCTCTTA 58.589 45.455 0.00 0.00 33.87 2.10
1797 1887 2.233271 CCAACACAACTGATGGCTCTT 58.767 47.619 0.00 0.00 33.87 2.85
1798 1888 1.901591 CCAACACAACTGATGGCTCT 58.098 50.000 0.00 0.00 33.87 4.09
1802 1892 2.138596 GTTGCCAACACAACTGATGG 57.861 50.000 1.91 0.00 45.20 3.51
1809 1899 2.425312 ACGATTCTTGTTGCCAACACAA 59.575 40.909 10.34 6.68 41.97 3.33
1810 1900 2.020720 ACGATTCTTGTTGCCAACACA 58.979 42.857 10.34 0.00 41.97 3.72
1811 1901 2.774439 ACGATTCTTGTTGCCAACAC 57.226 45.000 10.34 0.00 41.97 3.32
1812 1902 3.791973 AAACGATTCTTGTTGCCAACA 57.208 38.095 6.08 6.08 40.21 3.33
1813 1903 4.359706 AGAAAACGATTCTTGTTGCCAAC 58.640 39.130 0.00 0.00 0.00 3.77
1814 1904 4.338118 AGAGAAAACGATTCTTGTTGCCAA 59.662 37.500 9.07 0.00 0.00 4.52
1815 1905 3.882888 AGAGAAAACGATTCTTGTTGCCA 59.117 39.130 9.07 0.00 0.00 4.92
1816 1906 4.024048 TGAGAGAAAACGATTCTTGTTGCC 60.024 41.667 9.07 0.00 0.00 4.52
1817 1907 5.095691 TGAGAGAAAACGATTCTTGTTGC 57.904 39.130 9.07 0.00 0.00 4.17
1818 1908 5.622856 GCTTGAGAGAAAACGATTCTTGTTG 59.377 40.000 9.07 2.83 0.00 3.33
1819 1909 5.296780 TGCTTGAGAGAAAACGATTCTTGTT 59.703 36.000 9.07 0.88 0.00 2.83
1820 1910 4.816385 TGCTTGAGAGAAAACGATTCTTGT 59.184 37.500 9.07 1.93 0.00 3.16
1821 1911 5.348418 TGCTTGAGAGAAAACGATTCTTG 57.652 39.130 9.07 1.81 0.00 3.02
1822 1912 6.016777 ACAATGCTTGAGAGAAAACGATTCTT 60.017 34.615 9.07 1.70 0.00 2.52
1823 1913 5.471456 ACAATGCTTGAGAGAAAACGATTCT 59.529 36.000 7.73 7.73 0.00 2.40
1824 1914 5.693814 ACAATGCTTGAGAGAAAACGATTC 58.306 37.500 0.00 0.00 0.00 2.52
1825 1915 5.695851 ACAATGCTTGAGAGAAAACGATT 57.304 34.783 0.00 0.00 0.00 3.34
1826 1916 6.801539 TTACAATGCTTGAGAGAAAACGAT 57.198 33.333 0.00 0.00 0.00 3.73
1827 1917 6.260050 AGTTTACAATGCTTGAGAGAAAACGA 59.740 34.615 0.00 0.00 0.00 3.85
1828 1918 6.430451 AGTTTACAATGCTTGAGAGAAAACG 58.570 36.000 3.37 0.00 0.00 3.60
1829 1919 9.899226 ATAAGTTTACAATGCTTGAGAGAAAAC 57.101 29.630 3.37 0.00 0.00 2.43
1830 1920 9.897744 CATAAGTTTACAATGCTTGAGAGAAAA 57.102 29.630 3.37 0.00 0.00 2.29
1831 1921 9.066892 ACATAAGTTTACAATGCTTGAGAGAAA 57.933 29.630 3.37 0.00 0.00 2.52
1832 1922 8.621532 ACATAAGTTTACAATGCTTGAGAGAA 57.378 30.769 3.37 0.00 0.00 2.87
1833 1923 8.506437 CAACATAAGTTTACAATGCTTGAGAGA 58.494 33.333 3.37 0.00 35.28 3.10
1834 1924 8.292448 ACAACATAAGTTTACAATGCTTGAGAG 58.708 33.333 3.37 0.00 35.28 3.20
1835 1925 8.165239 ACAACATAAGTTTACAATGCTTGAGA 57.835 30.769 3.37 0.00 35.28 3.27
1836 1926 9.329913 GTACAACATAAGTTTACAATGCTTGAG 57.670 33.333 3.37 0.00 35.28 3.02
1837 1927 8.841300 TGTACAACATAAGTTTACAATGCTTGA 58.159 29.630 0.00 0.00 35.28 3.02
1838 1928 9.117145 CTGTACAACATAAGTTTACAATGCTTG 57.883 33.333 0.00 0.00 35.28 4.01
1839 1929 7.807907 GCTGTACAACATAAGTTTACAATGCTT 59.192 33.333 0.00 0.00 35.28 3.91
1840 1930 7.305474 GCTGTACAACATAAGTTTACAATGCT 58.695 34.615 0.00 0.00 35.28 3.79
1841 1931 6.526674 GGCTGTACAACATAAGTTTACAATGC 59.473 38.462 0.00 7.45 35.28 3.56
1842 1932 7.816640 AGGCTGTACAACATAAGTTTACAATG 58.183 34.615 0.00 0.00 35.28 2.82
1843 1933 7.996098 AGGCTGTACAACATAAGTTTACAAT 57.004 32.000 0.00 0.00 35.28 2.71
1844 1934 7.811117 AAGGCTGTACAACATAAGTTTACAA 57.189 32.000 0.00 0.00 35.28 2.41
1845 1935 7.499563 TCAAAGGCTGTACAACATAAGTTTACA 59.500 33.333 0.00 6.05 35.28 2.41
1846 1936 7.867752 TCAAAGGCTGTACAACATAAGTTTAC 58.132 34.615 0.00 0.00 35.28 2.01
1847 1937 8.630054 ATCAAAGGCTGTACAACATAAGTTTA 57.370 30.769 0.00 0.00 35.28 2.01
1848 1938 6.952773 TCAAAGGCTGTACAACATAAGTTT 57.047 33.333 0.00 0.00 35.28 2.66
1849 1939 7.448469 AGAATCAAAGGCTGTACAACATAAGTT 59.552 33.333 0.00 0.00 38.88 2.66
1850 1940 6.942576 AGAATCAAAGGCTGTACAACATAAGT 59.057 34.615 0.00 0.00 0.00 2.24
1851 1941 7.383102 AGAATCAAAGGCTGTACAACATAAG 57.617 36.000 0.00 0.00 0.00 1.73
1852 1942 9.461312 AATAGAATCAAAGGCTGTACAACATAA 57.539 29.630 0.00 0.00 0.00 1.90
1853 1943 9.461312 AAATAGAATCAAAGGCTGTACAACATA 57.539 29.630 0.00 0.00 0.00 2.29
1854 1944 7.944729 AATAGAATCAAAGGCTGTACAACAT 57.055 32.000 0.00 0.00 0.00 2.71
1855 1945 7.094377 GGAAATAGAATCAAAGGCTGTACAACA 60.094 37.037 0.00 0.00 0.00 3.33
1856 1946 7.251281 GGAAATAGAATCAAAGGCTGTACAAC 58.749 38.462 0.00 0.00 0.00 3.32
1857 1947 6.377146 GGGAAATAGAATCAAAGGCTGTACAA 59.623 38.462 0.00 0.00 0.00 2.41
1858 1948 5.885912 GGGAAATAGAATCAAAGGCTGTACA 59.114 40.000 0.00 0.00 0.00 2.90
1859 1949 5.299531 GGGGAAATAGAATCAAAGGCTGTAC 59.700 44.000 0.00 0.00 0.00 2.90
1860 1950 5.445964 GGGGAAATAGAATCAAAGGCTGTA 58.554 41.667 0.00 0.00 0.00 2.74
1861 1951 4.281657 GGGGAAATAGAATCAAAGGCTGT 58.718 43.478 0.00 0.00 0.00 4.40
1862 1952 3.638627 GGGGGAAATAGAATCAAAGGCTG 59.361 47.826 0.00 0.00 0.00 4.85
1863 1953 3.916035 GGGGGAAATAGAATCAAAGGCT 58.084 45.455 0.00 0.00 0.00 4.58
1882 1972 5.304357 AGAAAAACACTTGTTTATGAGGGGG 59.696 40.000 7.75 0.00 46.47 5.40
1883 1973 6.215845 CAGAAAAACACTTGTTTATGAGGGG 58.784 40.000 7.75 0.00 46.47 4.79
1884 1974 5.691754 GCAGAAAAACACTTGTTTATGAGGG 59.308 40.000 7.75 0.00 46.47 4.30
1885 1975 6.507023 AGCAGAAAAACACTTGTTTATGAGG 58.493 36.000 7.75 0.00 46.47 3.86
1886 1976 9.683069 ATTAGCAGAAAAACACTTGTTTATGAG 57.317 29.630 7.75 1.48 46.47 2.90
1890 1980 9.862371 TTGAATTAGCAGAAAAACACTTGTTTA 57.138 25.926 7.75 0.00 46.47 2.01
1892 1982 8.819974 CATTGAATTAGCAGAAAAACACTTGTT 58.180 29.630 0.00 0.00 40.50 2.83
1893 1983 7.981225 ACATTGAATTAGCAGAAAAACACTTGT 59.019 29.630 0.00 0.00 0.00 3.16
1894 1984 8.356533 ACATTGAATTAGCAGAAAAACACTTG 57.643 30.769 0.00 0.00 0.00 3.16
1895 1985 8.819974 CAACATTGAATTAGCAGAAAAACACTT 58.180 29.630 0.00 0.00 0.00 3.16
1896 1986 7.439056 CCAACATTGAATTAGCAGAAAAACACT 59.561 33.333 0.00 0.00 0.00 3.55
1897 1987 7.566709 CCAACATTGAATTAGCAGAAAAACAC 58.433 34.615 0.00 0.00 0.00 3.32
1898 1988 6.202570 GCCAACATTGAATTAGCAGAAAAACA 59.797 34.615 0.00 0.00 0.00 2.83
1899 1989 6.424812 AGCCAACATTGAATTAGCAGAAAAAC 59.575 34.615 0.00 0.00 0.00 2.43
1900 1990 6.424509 CAGCCAACATTGAATTAGCAGAAAAA 59.575 34.615 0.00 0.00 0.00 1.94
1901 1991 5.927689 CAGCCAACATTGAATTAGCAGAAAA 59.072 36.000 0.00 0.00 0.00 2.29
1902 1992 5.243507 TCAGCCAACATTGAATTAGCAGAAA 59.756 36.000 0.00 0.00 0.00 2.52
1903 1993 4.766373 TCAGCCAACATTGAATTAGCAGAA 59.234 37.500 0.00 0.00 0.00 3.02
1904 1994 4.334552 TCAGCCAACATTGAATTAGCAGA 58.665 39.130 0.00 0.00 0.00 4.26
1905 1995 4.707030 TCAGCCAACATTGAATTAGCAG 57.293 40.909 0.00 0.00 0.00 4.24
1906 1996 6.772360 TTATCAGCCAACATTGAATTAGCA 57.228 33.333 0.00 0.00 0.00 3.49
1907 1997 7.707893 ACATTTATCAGCCAACATTGAATTAGC 59.292 33.333 0.00 0.00 0.00 3.09
1908 1998 9.590451 AACATTTATCAGCCAACATTGAATTAG 57.410 29.630 0.00 0.00 0.00 1.73
1909 1999 9.368674 CAACATTTATCAGCCAACATTGAATTA 57.631 29.630 0.00 0.00 0.00 1.40
1910 2000 7.879160 ACAACATTTATCAGCCAACATTGAATT 59.121 29.630 0.00 0.00 0.00 2.17
1911 2001 7.388437 ACAACATTTATCAGCCAACATTGAAT 58.612 30.769 0.00 0.00 0.00 2.57
1912 2002 6.757237 ACAACATTTATCAGCCAACATTGAA 58.243 32.000 0.00 0.00 0.00 2.69
1913 2003 6.343716 ACAACATTTATCAGCCAACATTGA 57.656 33.333 0.00 0.00 0.00 2.57
1914 2004 5.286797 CGACAACATTTATCAGCCAACATTG 59.713 40.000 0.00 0.00 0.00 2.82
1915 2005 5.182950 TCGACAACATTTATCAGCCAACATT 59.817 36.000 0.00 0.00 0.00 2.71
1916 2006 4.699735 TCGACAACATTTATCAGCCAACAT 59.300 37.500 0.00 0.00 0.00 2.71
1917 2007 4.068599 TCGACAACATTTATCAGCCAACA 58.931 39.130 0.00 0.00 0.00 3.33
1918 2008 4.403453 GTCGACAACATTTATCAGCCAAC 58.597 43.478 11.55 0.00 0.00 3.77
1919 2009 3.124466 CGTCGACAACATTTATCAGCCAA 59.876 43.478 17.16 0.00 0.00 4.52
1920 2010 2.670905 CGTCGACAACATTTATCAGCCA 59.329 45.455 17.16 0.00 0.00 4.75
1921 2011 2.536928 GCGTCGACAACATTTATCAGCC 60.537 50.000 17.16 0.00 0.00 4.85
1922 2012 2.348666 AGCGTCGACAACATTTATCAGC 59.651 45.455 17.16 5.97 0.00 4.26
1923 2013 3.612423 TCAGCGTCGACAACATTTATCAG 59.388 43.478 17.16 0.00 0.00 2.90
1924 2014 3.580731 TCAGCGTCGACAACATTTATCA 58.419 40.909 17.16 0.00 0.00 2.15
1925 2015 3.857665 TCTCAGCGTCGACAACATTTATC 59.142 43.478 17.16 0.00 0.00 1.75
1926 2016 3.845178 TCTCAGCGTCGACAACATTTAT 58.155 40.909 17.16 0.00 0.00 1.40
1927 2017 3.291809 TCTCAGCGTCGACAACATTTA 57.708 42.857 17.16 0.00 0.00 1.40
1928 2018 2.148916 TCTCAGCGTCGACAACATTT 57.851 45.000 17.16 0.00 0.00 2.32
1929 2019 1.792949 GTTCTCAGCGTCGACAACATT 59.207 47.619 17.16 0.00 0.00 2.71
1930 2020 1.419374 GTTCTCAGCGTCGACAACAT 58.581 50.000 17.16 0.00 0.00 2.71
1931 2021 0.596600 GGTTCTCAGCGTCGACAACA 60.597 55.000 17.16 0.00 0.00 3.33
1932 2022 1.606350 CGGTTCTCAGCGTCGACAAC 61.606 60.000 17.16 10.73 39.15 3.32
1933 2023 1.371267 CGGTTCTCAGCGTCGACAA 60.371 57.895 17.16 0.00 39.15 3.18
1934 2024 2.254350 CGGTTCTCAGCGTCGACA 59.746 61.111 17.16 0.00 39.15 4.35
1941 2031 0.103208 ATGGATCGACGGTTCTCAGC 59.897 55.000 0.00 0.00 0.00 4.26
1942 2032 1.536922 CCATGGATCGACGGTTCTCAG 60.537 57.143 5.56 0.00 0.00 3.35
1943 2033 0.459899 CCATGGATCGACGGTTCTCA 59.540 55.000 5.56 0.00 0.00 3.27
1944 2034 0.744874 TCCATGGATCGACGGTTCTC 59.255 55.000 11.44 0.00 0.00 2.87
1945 2035 1.191535 TTCCATGGATCGACGGTTCT 58.808 50.000 17.06 0.00 0.00 3.01
1946 2036 2.018542 TTTCCATGGATCGACGGTTC 57.981 50.000 17.06 0.00 0.00 3.62
1947 2037 2.290071 ACTTTTCCATGGATCGACGGTT 60.290 45.455 17.06 0.00 0.00 4.44
1948 2038 1.278127 ACTTTTCCATGGATCGACGGT 59.722 47.619 17.06 6.40 0.00 4.83
1949 2039 1.933853 GACTTTTCCATGGATCGACGG 59.066 52.381 17.06 5.77 0.00 4.79
1950 2040 1.933853 GGACTTTTCCATGGATCGACG 59.066 52.381 17.06 5.33 42.30 5.12
1951 2041 3.118592 AGAGGACTTTTCCATGGATCGAC 60.119 47.826 17.06 7.26 45.72 4.20
1952 2042 3.107601 AGAGGACTTTTCCATGGATCGA 58.892 45.455 17.06 0.00 45.72 3.59
1953 2043 3.118629 TGAGAGGACTTTTCCATGGATCG 60.119 47.826 17.06 9.48 45.72 3.69
1954 2044 4.163078 TCTGAGAGGACTTTTCCATGGATC 59.837 45.833 17.06 10.03 45.72 3.36
1955 2045 4.107072 TCTGAGAGGACTTTTCCATGGAT 58.893 43.478 17.06 0.00 45.72 3.41
1956 2046 3.520696 TCTGAGAGGACTTTTCCATGGA 58.479 45.455 11.44 11.44 45.72 3.41
1957 2047 3.988976 TCTGAGAGGACTTTTCCATGG 57.011 47.619 4.97 4.97 45.72 3.66
1958 2048 8.517062 AATATTTCTGAGAGGACTTTTCCATG 57.483 34.615 0.00 0.00 45.72 3.66
1959 2049 8.555729 AGAATATTTCTGAGAGGACTTTTCCAT 58.444 33.333 0.00 0.00 40.79 3.41
1960 2050 7.922382 AGAATATTTCTGAGAGGACTTTTCCA 58.078 34.615 0.00 0.00 40.79 3.53
1961 2051 9.320352 GTAGAATATTTCTGAGAGGACTTTTCC 57.680 37.037 0.07 0.00 40.94 3.13
1963 2053 9.883142 CAGTAGAATATTTCTGAGAGGACTTTT 57.117 33.333 9.24 0.00 40.94 2.27
1964 2054 9.041354 ACAGTAGAATATTTCTGAGAGGACTTT 57.959 33.333 17.11 0.00 40.94 2.66
1965 2055 8.602472 ACAGTAGAATATTTCTGAGAGGACTT 57.398 34.615 17.11 0.00 40.94 3.01
1966 2056 9.875708 ATACAGTAGAATATTTCTGAGAGGACT 57.124 33.333 17.11 3.29 40.94 3.85
1980 2070 9.713713 TGTGTGCAAAACTAATACAGTAGAATA 57.286 29.630 0.00 0.00 36.04 1.75
1981 2071 8.615878 TGTGTGCAAAACTAATACAGTAGAAT 57.384 30.769 0.00 0.00 36.04 2.40
1982 2072 8.615878 ATGTGTGCAAAACTAATACAGTAGAA 57.384 30.769 0.00 0.00 36.04 2.10
1983 2073 9.366216 CTATGTGTGCAAAACTAATACAGTAGA 57.634 33.333 0.00 0.00 36.04 2.59
1984 2074 8.604035 CCTATGTGTGCAAAACTAATACAGTAG 58.396 37.037 0.00 0.00 36.04 2.57
1985 2075 7.065324 GCCTATGTGTGCAAAACTAATACAGTA 59.935 37.037 0.00 0.00 36.04 2.74
1986 2076 6.128007 GCCTATGTGTGCAAAACTAATACAGT 60.128 38.462 0.00 0.00 40.05 3.55
1987 2077 6.128035 TGCCTATGTGTGCAAAACTAATACAG 60.128 38.462 0.00 0.00 33.87 2.74
1988 2078 5.707764 TGCCTATGTGTGCAAAACTAATACA 59.292 36.000 0.00 0.00 33.87 2.29
1989 2079 6.189677 TGCCTATGTGTGCAAAACTAATAC 57.810 37.500 0.00 0.00 33.87 1.89
1990 2080 6.825944 TTGCCTATGTGTGCAAAACTAATA 57.174 33.333 0.00 0.00 43.94 0.98
1991 2081 5.720371 TTGCCTATGTGTGCAAAACTAAT 57.280 34.783 0.00 0.00 43.94 1.73
1998 2088 5.720371 AATTAGTTTGCCTATGTGTGCAA 57.280 34.783 0.00 0.00 45.12 4.08
1999 2089 8.402472 GTTATAATTAGTTTGCCTATGTGTGCA 58.598 33.333 0.00 0.00 35.27 4.57
2000 2090 8.402472 TGTTATAATTAGTTTGCCTATGTGTGC 58.598 33.333 0.00 0.00 0.00 4.57
2060 2150 8.883731 GCGCTCATATTATACCAGTGAATTAAT 58.116 33.333 0.00 0.00 0.00 1.40
2061 2151 7.333423 GGCGCTCATATTATACCAGTGAATTAA 59.667 37.037 7.64 0.00 0.00 1.40
2062 2152 6.816640 GGCGCTCATATTATACCAGTGAATTA 59.183 38.462 7.64 0.00 0.00 1.40
2063 2153 5.643777 GGCGCTCATATTATACCAGTGAATT 59.356 40.000 7.64 0.00 0.00 2.17
2064 2154 5.046304 AGGCGCTCATATTATACCAGTGAAT 60.046 40.000 7.64 0.00 0.00 2.57
2065 2155 4.283467 AGGCGCTCATATTATACCAGTGAA 59.717 41.667 7.64 0.00 0.00 3.18
2066 2156 3.832490 AGGCGCTCATATTATACCAGTGA 59.168 43.478 7.64 0.00 0.00 3.41
2067 2157 4.193826 AGGCGCTCATATTATACCAGTG 57.806 45.455 7.64 0.00 0.00 3.66
2068 2158 5.262009 TCTAGGCGCTCATATTATACCAGT 58.738 41.667 7.64 0.00 0.00 4.00
2069 2159 5.836821 TCTAGGCGCTCATATTATACCAG 57.163 43.478 7.64 0.00 0.00 4.00
2070 2160 6.599356 TTTCTAGGCGCTCATATTATACCA 57.401 37.500 7.64 0.00 0.00 3.25
2071 2161 7.900782 TTTTTCTAGGCGCTCATATTATACC 57.099 36.000 7.64 0.00 0.00 2.73
2100 2190 9.650714 TGAAAATTCAGAGGATTGAATCCATAT 57.349 29.630 24.89 5.56 44.74 1.78
2101 2191 9.478238 TTGAAAATTCAGAGGATTGAATCCATA 57.522 29.630 24.89 5.48 44.74 2.74
2102 2192 7.966339 TGAAAATTCAGAGGATTGAATCCAT 57.034 32.000 24.89 11.13 44.74 3.41
2103 2193 7.779754 TTGAAAATTCAGAGGATTGAATCCA 57.220 32.000 24.89 5.34 44.74 3.41
2104 2194 8.472413 TCATTGAAAATTCAGAGGATTGAATCC 58.528 33.333 16.35 16.35 44.74 3.01
2105 2195 9.865321 TTCATTGAAAATTCAGAGGATTGAATC 57.135 29.630 0.00 0.00 44.74 2.52
2134 2224 9.675464 ACCTTACGGTATCTTTGATTGAAAATA 57.325 29.630 0.00 0.00 43.29 1.40
2135 2225 8.458843 CACCTTACGGTATCTTTGATTGAAAAT 58.541 33.333 0.00 0.00 43.24 1.82
2136 2226 7.094549 CCACCTTACGGTATCTTTGATTGAAAA 60.095 37.037 0.00 0.00 43.24 2.29
2137 2227 6.373216 CCACCTTACGGTATCTTTGATTGAAA 59.627 38.462 0.00 0.00 43.24 2.69
2138 2228 5.878116 CCACCTTACGGTATCTTTGATTGAA 59.122 40.000 0.00 0.00 43.24 2.69
2139 2229 5.188163 TCCACCTTACGGTATCTTTGATTGA 59.812 40.000 0.00 0.00 43.24 2.57
2140 2230 5.293569 GTCCACCTTACGGTATCTTTGATTG 59.706 44.000 0.00 0.00 43.24 2.67
2141 2231 5.189145 AGTCCACCTTACGGTATCTTTGATT 59.811 40.000 0.00 0.00 43.24 2.57
2142 2232 4.715297 AGTCCACCTTACGGTATCTTTGAT 59.285 41.667 0.00 0.00 43.24 2.57
2143 2233 4.091549 AGTCCACCTTACGGTATCTTTGA 58.908 43.478 0.00 0.00 43.24 2.69
2144 2234 4.467198 AGTCCACCTTACGGTATCTTTG 57.533 45.455 0.00 0.00 43.24 2.77
2145 2235 5.513233 TCTAGTCCACCTTACGGTATCTTT 58.487 41.667 0.00 0.00 43.24 2.52
2146 2236 5.121380 TCTAGTCCACCTTACGGTATCTT 57.879 43.478 0.00 0.00 43.24 2.40
2147 2237 4.785346 TCTAGTCCACCTTACGGTATCT 57.215 45.455 0.00 0.00 43.24 1.98
2148 2238 5.591877 TCTTTCTAGTCCACCTTACGGTATC 59.408 44.000 0.00 0.00 43.24 2.24
2149 2239 5.359292 GTCTTTCTAGTCCACCTTACGGTAT 59.641 44.000 0.00 0.00 43.24 2.73
2150 2240 4.702131 GTCTTTCTAGTCCACCTTACGGTA 59.298 45.833 0.00 0.00 43.24 4.02
2152 2242 3.762823 AGTCTTTCTAGTCCACCTTACGG 59.237 47.826 0.00 0.00 0.00 4.02
2153 2243 5.413833 TGTAGTCTTTCTAGTCCACCTTACG 59.586 44.000 0.00 0.00 0.00 3.18
2154 2244 6.830873 TGTAGTCTTTCTAGTCCACCTTAC 57.169 41.667 0.00 0.00 0.00 2.34
2155 2245 7.093465 CCATTGTAGTCTTTCTAGTCCACCTTA 60.093 40.741 0.00 0.00 0.00 2.69
2156 2246 6.295916 CCATTGTAGTCTTTCTAGTCCACCTT 60.296 42.308 0.00 0.00 0.00 3.50
2157 2247 5.187967 CCATTGTAGTCTTTCTAGTCCACCT 59.812 44.000 0.00 0.00 0.00 4.00
2158 2248 5.420409 CCATTGTAGTCTTTCTAGTCCACC 58.580 45.833 0.00 0.00 0.00 4.61
2159 2249 4.870991 GCCATTGTAGTCTTTCTAGTCCAC 59.129 45.833 0.00 0.00 0.00 4.02
2160 2250 4.081087 GGCCATTGTAGTCTTTCTAGTCCA 60.081 45.833 0.00 0.00 0.00 4.02
2161 2251 4.081087 TGGCCATTGTAGTCTTTCTAGTCC 60.081 45.833 0.00 0.00 0.00 3.85
2162 2252 4.870991 GTGGCCATTGTAGTCTTTCTAGTC 59.129 45.833 9.72 0.00 0.00 2.59
2163 2253 4.620803 CGTGGCCATTGTAGTCTTTCTAGT 60.621 45.833 9.72 0.00 0.00 2.57
2164 2254 3.865745 CGTGGCCATTGTAGTCTTTCTAG 59.134 47.826 9.72 0.00 0.00 2.43
2165 2255 3.512329 TCGTGGCCATTGTAGTCTTTCTA 59.488 43.478 9.72 0.00 0.00 2.10
2166 2256 2.301870 TCGTGGCCATTGTAGTCTTTCT 59.698 45.455 9.72 0.00 0.00 2.52
2167 2257 2.695359 TCGTGGCCATTGTAGTCTTTC 58.305 47.619 9.72 0.00 0.00 2.62
2168 2258 2.851263 TCGTGGCCATTGTAGTCTTT 57.149 45.000 9.72 0.00 0.00 2.52
2169 2259 3.350219 AATCGTGGCCATTGTAGTCTT 57.650 42.857 9.72 0.00 0.00 3.01
2170 2260 4.689612 ATAATCGTGGCCATTGTAGTCT 57.310 40.909 9.72 0.00 0.00 3.24
2171 2261 6.649141 TGATAATAATCGTGGCCATTGTAGTC 59.351 38.462 9.72 0.72 34.60 2.59
2172 2262 6.530120 TGATAATAATCGTGGCCATTGTAGT 58.470 36.000 9.72 1.11 34.60 2.73
2173 2263 7.433708 TTGATAATAATCGTGGCCATTGTAG 57.566 36.000 9.72 0.00 34.60 2.74
2174 2264 7.809546 TTTGATAATAATCGTGGCCATTGTA 57.190 32.000 9.72 0.00 34.60 2.41
2175 2265 6.707440 TTTGATAATAATCGTGGCCATTGT 57.293 33.333 9.72 0.00 34.60 2.71
2176 2266 7.167968 CACTTTTGATAATAATCGTGGCCATTG 59.832 37.037 9.72 4.89 34.60 2.82
2177 2267 7.202526 CACTTTTGATAATAATCGTGGCCATT 58.797 34.615 9.72 0.90 34.60 3.16
2178 2268 6.239008 CCACTTTTGATAATAATCGTGGCCAT 60.239 38.462 9.72 0.00 34.91 4.40
2179 2269 5.067153 CCACTTTTGATAATAATCGTGGCCA 59.933 40.000 0.00 0.00 34.91 5.36
2180 2270 5.067283 ACCACTTTTGATAATAATCGTGGCC 59.933 40.000 0.00 0.00 40.66 5.36
2181 2271 6.131544 ACCACTTTTGATAATAATCGTGGC 57.868 37.500 0.00 0.00 40.66 5.01
2182 2272 7.757526 TCAACCACTTTTGATAATAATCGTGG 58.242 34.615 0.00 0.00 41.76 4.94
2193 2283 9.369904 GCATAACAAATATCAACCACTTTTGAT 57.630 29.630 3.95 3.95 46.00 2.57
2194 2284 8.363390 TGCATAACAAATATCAACCACTTTTGA 58.637 29.630 0.00 0.00 39.79 2.69
2195 2285 8.434661 GTGCATAACAAATATCAACCACTTTTG 58.565 33.333 0.00 0.00 34.34 2.44
2196 2286 8.367156 AGTGCATAACAAATATCAACCACTTTT 58.633 29.630 0.00 0.00 0.00 2.27
2197 2287 7.895759 AGTGCATAACAAATATCAACCACTTT 58.104 30.769 0.00 0.00 0.00 2.66
2198 2288 7.466746 AGTGCATAACAAATATCAACCACTT 57.533 32.000 0.00 0.00 0.00 3.16
2199 2289 8.752005 ATAGTGCATAACAAATATCAACCACT 57.248 30.769 0.00 0.00 0.00 4.00
2200 2290 9.801873 AAATAGTGCATAACAAATATCAACCAC 57.198 29.630 0.00 0.00 0.00 4.16
2226 2316 9.569122 GGCCTATTTCCTATTATTTGTAGTCAA 57.431 33.333 0.00 0.00 0.00 3.18
2227 2317 8.719596 TGGCCTATTTCCTATTATTTGTAGTCA 58.280 33.333 3.32 0.00 0.00 3.41
2228 2318 9.569122 TTGGCCTATTTCCTATTATTTGTAGTC 57.431 33.333 3.32 0.00 0.00 2.59
2229 2319 9.930158 TTTGGCCTATTTCCTATTATTTGTAGT 57.070 29.630 3.32 0.00 0.00 2.73
2231 2321 9.702253 TGTTTGGCCTATTTCCTATTATTTGTA 57.298 29.630 3.32 0.00 0.00 2.41
2232 2322 8.602472 TGTTTGGCCTATTTCCTATTATTTGT 57.398 30.769 3.32 0.00 0.00 2.83
2241 2331 8.914011 GTCTATTAAATGTTTGGCCTATTTCCT 58.086 33.333 3.32 0.78 0.00 3.36
2242 2332 8.914011 AGTCTATTAAATGTTTGGCCTATTTCC 58.086 33.333 3.32 0.00 0.00 3.13
2243 2333 9.952188 GAGTCTATTAAATGTTTGGCCTATTTC 57.048 33.333 3.32 0.00 0.00 2.17
2244 2334 8.621286 CGAGTCTATTAAATGTTTGGCCTATTT 58.379 33.333 3.32 8.49 0.00 1.40
2245 2335 7.228706 CCGAGTCTATTAAATGTTTGGCCTATT 59.771 37.037 3.32 0.00 0.00 1.73
2246 2336 6.710744 CCGAGTCTATTAAATGTTTGGCCTAT 59.289 38.462 3.32 0.00 0.00 2.57
2247 2337 6.053005 CCGAGTCTATTAAATGTTTGGCCTA 58.947 40.000 3.32 0.00 0.00 3.93
2248 2338 4.881850 CCGAGTCTATTAAATGTTTGGCCT 59.118 41.667 3.32 0.00 0.00 5.19
2249 2339 4.879545 TCCGAGTCTATTAAATGTTTGGCC 59.120 41.667 0.00 0.00 0.00 5.36
2250 2340 5.815740 TCTCCGAGTCTATTAAATGTTTGGC 59.184 40.000 0.00 0.00 0.00 4.52
2251 2341 6.480320 CCTCTCCGAGTCTATTAAATGTTTGG 59.520 42.308 0.00 0.00 0.00 3.28
2252 2342 7.265673 TCCTCTCCGAGTCTATTAAATGTTTG 58.734 38.462 0.00 0.00 0.00 2.93
2253 2343 7.419711 TCCTCTCCGAGTCTATTAAATGTTT 57.580 36.000 0.00 0.00 0.00 2.83
2254 2344 7.070074 ACATCCTCTCCGAGTCTATTAAATGTT 59.930 37.037 0.00 0.00 0.00 2.71
2255 2345 6.551601 ACATCCTCTCCGAGTCTATTAAATGT 59.448 38.462 0.00 0.00 0.00 2.71
2256 2346 6.865726 CACATCCTCTCCGAGTCTATTAAATG 59.134 42.308 0.00 0.00 0.00 2.32
2257 2347 6.015010 CCACATCCTCTCCGAGTCTATTAAAT 60.015 42.308 0.00 0.00 0.00 1.40
2258 2348 5.302059 CCACATCCTCTCCGAGTCTATTAAA 59.698 44.000 0.00 0.00 0.00 1.52
2259 2349 4.827835 CCACATCCTCTCCGAGTCTATTAA 59.172 45.833 0.00 0.00 0.00 1.40
2260 2350 4.399219 CCACATCCTCTCCGAGTCTATTA 58.601 47.826 0.00 0.00 0.00 0.98
2261 2351 3.226777 CCACATCCTCTCCGAGTCTATT 58.773 50.000 0.00 0.00 0.00 1.73
2262 2352 2.870175 CCACATCCTCTCCGAGTCTAT 58.130 52.381 0.00 0.00 0.00 1.98
2263 2353 1.751032 GCCACATCCTCTCCGAGTCTA 60.751 57.143 0.00 0.00 0.00 2.59
2264 2354 1.040339 GCCACATCCTCTCCGAGTCT 61.040 60.000 0.00 0.00 0.00 3.24
2265 2355 1.439644 GCCACATCCTCTCCGAGTC 59.560 63.158 0.00 0.00 0.00 3.36
2266 2356 2.418910 CGCCACATCCTCTCCGAGT 61.419 63.158 0.00 0.00 0.00 4.18
2267 2357 2.415010 CGCCACATCCTCTCCGAG 59.585 66.667 0.00 0.00 0.00 4.63
2268 2358 2.362503 ACGCCACATCCTCTCCGA 60.363 61.111 0.00 0.00 0.00 4.55
2269 2359 2.202797 CACGCCACATCCTCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
2270 2360 2.512515 GCACGCCACATCCTCTCC 60.513 66.667 0.00 0.00 0.00 3.71
2271 2361 0.745845 ATTGCACGCCACATCCTCTC 60.746 55.000 0.00 0.00 0.00 3.20
2272 2362 1.028330 CATTGCACGCCACATCCTCT 61.028 55.000 0.00 0.00 0.00 3.69
2273 2363 1.430632 CATTGCACGCCACATCCTC 59.569 57.895 0.00 0.00 0.00 3.71
2274 2364 2.048023 CCATTGCACGCCACATCCT 61.048 57.895 0.00 0.00 0.00 3.24
2275 2365 2.342650 ACCATTGCACGCCACATCC 61.343 57.895 0.00 0.00 0.00 3.51
2276 2366 1.153978 CACCATTGCACGCCACATC 60.154 57.895 0.00 0.00 0.00 3.06
2277 2367 1.462731 AACACCATTGCACGCCACAT 61.463 50.000 0.00 0.00 0.00 3.21
2278 2368 2.124060 AACACCATTGCACGCCACA 61.124 52.632 0.00 0.00 0.00 4.17
2279 2369 1.661197 CAACACCATTGCACGCCAC 60.661 57.895 0.00 0.00 0.00 5.01
2280 2370 2.726909 CAACACCATTGCACGCCA 59.273 55.556 0.00 0.00 0.00 5.69
2281 2371 2.049248 CCAACACCATTGCACGCC 60.049 61.111 0.00 0.00 0.00 5.68
2282 2372 1.081242 CTCCAACACCATTGCACGC 60.081 57.895 0.00 0.00 0.00 5.34
2283 2373 1.464608 CTACTCCAACACCATTGCACG 59.535 52.381 0.00 0.00 0.00 5.34
2284 2374 1.812571 CCTACTCCAACACCATTGCAC 59.187 52.381 0.00 0.00 0.00 4.57
2285 2375 1.886222 GCCTACTCCAACACCATTGCA 60.886 52.381 0.00 0.00 0.00 4.08
2286 2376 0.811281 GCCTACTCCAACACCATTGC 59.189 55.000 0.00 0.00 0.00 3.56
2287 2377 2.086869 CTGCCTACTCCAACACCATTG 58.913 52.381 0.00 0.00 0.00 2.82
2288 2378 1.985159 TCTGCCTACTCCAACACCATT 59.015 47.619 0.00 0.00 0.00 3.16
2289 2379 1.279271 GTCTGCCTACTCCAACACCAT 59.721 52.381 0.00 0.00 0.00 3.55
2290 2380 0.685097 GTCTGCCTACTCCAACACCA 59.315 55.000 0.00 0.00 0.00 4.17
2291 2381 0.389948 CGTCTGCCTACTCCAACACC 60.390 60.000 0.00 0.00 0.00 4.16
2292 2382 0.389948 CCGTCTGCCTACTCCAACAC 60.390 60.000 0.00 0.00 0.00 3.32
2293 2383 0.830444 ACCGTCTGCCTACTCCAACA 60.830 55.000 0.00 0.00 0.00 3.33
2294 2384 0.108756 GACCGTCTGCCTACTCCAAC 60.109 60.000 0.00 0.00 0.00 3.77
2295 2385 1.592400 CGACCGTCTGCCTACTCCAA 61.592 60.000 0.00 0.00 0.00 3.53
2296 2386 2.044555 CGACCGTCTGCCTACTCCA 61.045 63.158 0.00 0.00 0.00 3.86
2297 2387 2.772691 CCGACCGTCTGCCTACTCC 61.773 68.421 0.00 0.00 0.00 3.85
2298 2388 1.716826 CTCCGACCGTCTGCCTACTC 61.717 65.000 0.00 0.00 0.00 2.59
2299 2389 1.749638 CTCCGACCGTCTGCCTACT 60.750 63.158 0.00 0.00 0.00 2.57
2300 2390 0.745845 TACTCCGACCGTCTGCCTAC 60.746 60.000 0.00 0.00 0.00 3.18
2301 2391 0.463295 CTACTCCGACCGTCTGCCTA 60.463 60.000 0.00 0.00 0.00 3.93
2302 2392 1.749638 CTACTCCGACCGTCTGCCT 60.750 63.158 0.00 0.00 0.00 4.75
2303 2393 1.748122 TCTACTCCGACCGTCTGCC 60.748 63.158 0.00 0.00 0.00 4.85
2304 2394 1.428620 GTCTACTCCGACCGTCTGC 59.571 63.158 0.00 0.00 0.00 4.26
2305 2395 1.018226 ACGTCTACTCCGACCGTCTG 61.018 60.000 0.00 0.00 0.00 3.51
2306 2396 1.018226 CACGTCTACTCCGACCGTCT 61.018 60.000 0.00 0.00 0.00 4.18
2307 2397 1.423056 CACGTCTACTCCGACCGTC 59.577 63.158 0.00 0.00 0.00 4.79
2308 2398 2.037136 CCACGTCTACTCCGACCGT 61.037 63.158 0.00 0.00 0.00 4.83
2309 2399 2.789917 CCACGTCTACTCCGACCG 59.210 66.667 0.00 0.00 0.00 4.79
2310 2400 2.338015 TGCCACGTCTACTCCGACC 61.338 63.158 0.00 0.00 0.00 4.79
2311 2401 1.154073 GTGCCACGTCTACTCCGAC 60.154 63.158 0.00 0.00 0.00 4.79
2312 2402 2.683859 CGTGCCACGTCTACTCCGA 61.684 63.158 9.53 0.00 36.74 4.55
2313 2403 2.202440 CGTGCCACGTCTACTCCG 60.202 66.667 9.53 0.00 36.74 4.63
2324 2414 2.457743 ATAAGCGGGTCAACGTGCCA 62.458 55.000 0.00 0.00 35.98 4.92
2325 2415 0.460635 TATAAGCGGGTCAACGTGCC 60.461 55.000 0.00 0.00 35.98 5.01
2326 2416 1.578583 ATATAAGCGGGTCAACGTGC 58.421 50.000 0.00 0.00 35.98 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.