AutoCloner

Multiple sequence alignment - TraesCS3A01G481700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G481700	chr3A	100.000	3554	0	0	1	3554	712576792	712573239	0.000000e+00	6564.0
1	TraesCS3A01G481700	chr3A	80.908	1608	255	28	964	2536	712655152	712653562	0.000000e+00	1221.0
2	TraesCS3A01G481700	chr3A	81.780	472	41	22	2933	3388	44579420	44579862	1.570000e-93	353.0
3	TraesCS3A01G481700	chr3A	81.662	349	46	14	82	421	497094513	497094174	1.260000e-69	274.0
4	TraesCS3A01G481700	chr3B	91.661	2998	170	47	424	3374	769192963	769189999	0.000000e+00	4078.0
5	TraesCS3A01G481700	chr3B	91.110	3026	192	45	424	3402	769156065	769159060	0.000000e+00	4026.0
6	TraesCS3A01G481700	chr3B	87.958	2076	186	26	636	2660	769704211	769702149	0.000000e+00	2390.0
7	TraesCS3A01G481700	chr3B	92.011	1139	64	20	1702	2821	769309615	769308485	0.000000e+00	1574.0
8	TraesCS3A01G481700	chr3B	91.045	1139	76	17	1702	2821	770357913	770356782	0.000000e+00	1515.0
9	TraesCS3A01G481700	chr3B	78.869	1680	323	16	964	2616	770404243	770402569	0.000000e+00	1107.0
10	TraesCS3A01G481700	chr3B	78.597	1682	323	24	964	2616	769488775	769487102	0.000000e+00	1077.0
11	TraesCS3A01G481700	chr3B	78.611	1641	320	14	1001	2616	769267897	769266263	0.000000e+00	1057.0
12	TraesCS3A01G481700	chr3B	77.739	1725	347	22	964	2658	770313107	770311390	0.000000e+00	1024.0
13	TraesCS3A01G481700	chr3B	76.674	1449	293	26	1001	2418	770109072	770107638	0.000000e+00	761.0
14	TraesCS3A01G481700	chr3B	82.937	756	104	9	2819	3554	770356580	770355830	0.000000e+00	658.0
15	TraesCS3A01G481700	chr3B	82.540	756	109	8	2819	3554	769308283	769307531	0.000000e+00	643.0
16	TraesCS3A01G481700	chr3B	87.500	160	9	3	3405	3554	132083774	132083932	1.310000e-39	174.0
17	TraesCS3A01G481700	chr3D	94.824	2608	90	23	1	2579	577285289	577282698	0.000000e+00	4026.0
18	TraesCS3A01G481700	chr3D	86.448	974	101	13	2606	3554	577282700	577281733	0.000000e+00	1038.0
19	TraesCS3A01G481700	chrUn	94.191	2341	111	18	529	2849	344085120	344087455	0.000000e+00	3546.0
20	TraesCS3A01G481700	chrUn	86.672	1223	111	32	2206	3403	333458557	333457362	0.000000e+00	1308.0
21	TraesCS3A01G481700	chrUn	93.968	630	28	9	424	1047	319853915	319853290	0.000000e+00	944.0
22	TraesCS3A01G481700	chrUn	93.819	631	28	9	424	1047	319833589	319832963	0.000000e+00	939.0
23	TraesCS3A01G481700	chrUn	81.684	475	58	10	2998	3450	471832785	471833252	5.610000e-98	368.0
24	TraesCS3A01G481700	chrUn	80.167	479	69	8	2997	3450	15625056	15625533	5.690000e-88	335.0
25	TraesCS3A01G481700	chrUn	86.245	269	34	3	2656	2923	15624752	15625018	4.490000e-74	289.0
26	TraesCS3A01G481700	chrUn	87.019	208	24	3	2656	2862	385957207	385957412	7.670000e-57	231.0
27	TraesCS3A01G481700	chrUn	90.351	114	11	0	3441	3554	15625584	15625697	2.210000e-32	150.0
28	TraesCS3A01G481700	chr4A	80.505	436	63	8	2895	3314	658380830	658381259	7.410000e-82	315.0
29	TraesCS3A01G481700	chr1B	81.796	401	50	13	37	417	24560015	24559618	7.410000e-82	315.0
30	TraesCS3A01G481700	chr1B	83.959	293	38	9	133	421	328647083	328647370	4.520000e-69	272.0
31	TraesCS3A01G481700	chr1B	86.164	159	11	3	3406	3554	593787710	593787553	1.020000e-35	161.0
32	TraesCS3A01G481700	chr7D	83.918	342	38	9	93	423	82854610	82854275	9.580000e-81	311.0
33	TraesCS3A01G481700	chr4D	84.226	336	36	9	93	417	425976550	425976221	9.580000e-81	311.0
34	TraesCS3A01G481700	chr4D	80.473	169	24	3	2895	3054	85853471	85853303	1.730000e-23	121.0
35	TraesCS3A01G481700	chr5D	83.976	337	33	11	94	417	534010988	534010660	1.600000e-78	303.0
36	TraesCS3A01G481700	chr5D	87.719	57	7	0	365	421	544531964	544531908	2.290000e-07	67.6
37	TraesCS3A01G481700	chr2B	82.825	361	40	11	2968	3314	134340808	134341160	1.600000e-78	303.0
38	TraesCS3A01G481700	chr6A	82.720	353	47	8	2968	3314	163168662	163168318	5.770000e-78	302.0
39	TraesCS3A01G481700	chr2D	81.170	393	51	15	38	417	617130203	617129821	9.650000e-76	294.0
40	TraesCS3A01G481700	chr2D	86.250	240	19	7	2968	3198	606091913	606091679	7.620000e-62	248.0
41	TraesCS3A01G481700	chr6D	79.572	421	54	17	2659	3065	137153533	137153131	4.520000e-69	272.0
42	TraesCS3A01G481700	chr6D	77.083	432	53	22	2666	3062	440672460	440672880	1.290000e-49	207.0
43	TraesCS3A01G481700	chr1A	80.952	357	57	9	65	417	297701618	297701967	4.520000e-69	272.0
44	TraesCS3A01G481700	chr5A	87.342	158	11	1	3406	3554	675453758	675453601	4.720000e-39	172.0
45	TraesCS3A01G481700	chr2A	85.799	169	15	2	2980	3139	764882467	764882635	1.700000e-38	171.0
46	TraesCS3A01G481700	chr5B	92.105	114	9	0	3441	3554	691747832	691747719	1.020000e-35	161.0
47	TraesCS3A01G481700	chr7B	80.000	180	21	7	2895	3062	228799950	228800126	6.230000e-23	119.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G481700	chr3A	712573239	712576792	3553	True	6564.0	6564	100.000000	1	3554	1	chr3A.!!$R2	3553
1	TraesCS3A01G481700	chr3A	712653562	712655152	1590	True	1221.0	1221	80.908000	964	2536	1	chr3A.!!$R3	1572
2	TraesCS3A01G481700	chr3B	769189999	769192963	2964	True	4078.0	4078	91.661000	424	3374	1	chr3B.!!$R1	2950
3	TraesCS3A01G481700	chr3B	769156065	769159060	2995	False	4026.0	4026	91.110000	424	3402	1	chr3B.!!$F2	2978
4	TraesCS3A01G481700	chr3B	769702149	769704211	2062	True	2390.0	2390	87.958000	636	2660	1	chr3B.!!$R4	2024
5	TraesCS3A01G481700	chr3B	769307531	769309615	2084	True	1108.5	1574	87.275500	1702	3554	2	chr3B.!!$R8	1852
6	TraesCS3A01G481700	chr3B	770402569	770404243	1674	True	1107.0	1107	78.869000	964	2616	1	chr3B.!!$R7	1652
7	TraesCS3A01G481700	chr3B	770355830	770357913	2083	True	1086.5	1515	86.991000	1702	3554	2	chr3B.!!$R9	1852
8	TraesCS3A01G481700	chr3B	769487102	769488775	1673	True	1077.0	1077	78.597000	964	2616	1	chr3B.!!$R3	1652
9	TraesCS3A01G481700	chr3B	769266263	769267897	1634	True	1057.0	1057	78.611000	1001	2616	1	chr3B.!!$R2	1615
10	TraesCS3A01G481700	chr3B	770311390	770313107	1717	True	1024.0	1024	77.739000	964	2658	1	chr3B.!!$R6	1694
11	TraesCS3A01G481700	chr3B	770107638	770109072	1434	True	761.0	761	76.674000	1001	2418	1	chr3B.!!$R5	1417
12	TraesCS3A01G481700	chr3D	577281733	577285289	3556	True	2532.0	4026	90.636000	1	3554	2	chr3D.!!$R1	3553
13	TraesCS3A01G481700	chrUn	344085120	344087455	2335	False	3546.0	3546	94.191000	529	2849	1	chrUn.!!$F1	2320
14	TraesCS3A01G481700	chrUn	333457362	333458557	1195	True	1308.0	1308	86.672000	2206	3403	1	chrUn.!!$R3	1197
15	TraesCS3A01G481700	chrUn	319853290	319853915	625	True	944.0	944	93.968000	424	1047	1	chrUn.!!$R2	623
16	TraesCS3A01G481700	chrUn	319832963	319833589	626	True	939.0	939	93.819000	424	1047	1	chrUn.!!$R1	623
17	TraesCS3A01G481700	chrUn	15624752	15625697	945	False	258.0	335	85.587667	2656	3554	3	chrUn.!!$F4	898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
148	155	0.106708	TATTGCATGAGGTCCGCTCC	59.893	55.0	0.00	0.0	0.00	4.70	F
1922	1966	0.172578	TGTCAAGGATACGAGCACGG	59.827	55.0	8.74	0.0	44.46	4.94	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2031	2113	0.616395	TTGATCCCGGCAGGTCACTA	60.616	55.0	1.11	0.0	36.75	2.74	R
3143	3476	0.106318	TTCCTCTAGACGGCTACCCC	60.106	60.0	0.00	0.0	0.00	4.95	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
75	76	1.807886	GACGCTCATCTACACCCGT	59.192	57.895	0.00	0.00	0.00	5.28
135	142	9.881649	TTTATGCATGGTAGAAAATTTATTGCA	57.118	25.926	10.16	0.84	0.00	4.08
148	155	0.106708	TATTGCATGAGGTCCGCTCC	59.893	55.000	0.00	0.00	0.00	4.70
155	162	0.472471	TGAGGTCCGCTCCACTTTTT	59.528	50.000	0.00	0.00	0.00	1.94
181	188	7.337167	AGATCATTTGAACATCTGAGTAGCTT	58.663	34.615	0.00	0.00	0.00	3.74
221	228	9.169468	CAAATCGGATTAGTACAATGCATAAAC	57.831	33.333	0.00	0.00	0.00	2.01
251	259	7.153217	ACTTTTTATAGACCCCGAATTTGTG	57.847	36.000	0.00	0.00	0.00	3.33
305	313	8.231837	CCAAATGATTTGAAAATTGAAGCGAAT	58.768	29.630	18.82	0.00	43.26	3.34
417	425	1.681166	CCTGGGCTCAGAAGTGGATTG	60.681	57.143	17.43	0.00	43.49	2.67
420	428	1.363744	GGCTCAGAAGTGGATTGTCG	58.636	55.000	0.00	0.00	0.00	4.35
593	605	6.929606	GCTTTTGGACTAGAGACTCTTAACAA	59.070	38.462	10.96	8.58	0.00	2.83
734	746	2.717044	TATGCACCACGTCCGAGGG	61.717	63.158	8.01	4.65	0.00	4.30
799	812	6.035843	CCAATTGTCTTTATCAACGGAATGG	58.964	40.000	4.43	0.00	0.00	3.16
956	993	0.679321	TGAGCAGCACAACCACAACA	60.679	50.000	0.00	0.00	0.00	3.33
979	1016	9.944376	AACATACTCTTCTCTTACTAATTTGCA	57.056	29.630	0.00	0.00	0.00	4.08
1107	1146	3.931468	ACAGATCAGTTGAAGAATCAGCG	59.069	43.478	0.00	0.00	41.24	5.18
1535	1574	4.272489	CCTCTTATTGGGCATGTCTTCAA	58.728	43.478	0.00	0.00	0.00	2.69
1870	1914	6.313905	ACACTTGAACGACATCCATAGAATTC	59.686	38.462	0.00	0.00	0.00	2.17
1922	1966	0.172578	TGTCAAGGATACGAGCACGG	59.827	55.000	8.74	0.00	44.46	4.94
1940	2002	3.011760	GCGTTGTGCCTAGCGACAC	62.012	63.158	0.00	2.74	37.76	3.67
1989	2063	5.674525	TCTAGCATATTTCCTGAACCAGTG	58.325	41.667	0.00	0.00	0.00	3.66
2025	2107	3.888930	TGTGGCGTCATATCTCAGTATCA	59.111	43.478	0.00	0.00	0.00	2.15
2031	2113	6.317642	GGCGTCATATCTCAGTATCAGAGTAT	59.682	42.308	0.00	0.00	34.73	2.12
2129	2211	2.917933	TGGAATTATGTTCCTGCCTCG	58.082	47.619	11.57	0.00	39.31	4.63
2479	2567	1.982073	GCAGGCGGGTGAATCTTTCG	61.982	60.000	0.00	0.00	0.00	3.46
2484	2572	2.414161	GGCGGGTGAATCTTTCGAAAAG	60.414	50.000	12.41	6.54	0.00	2.27
2537	2625	0.676782	AGCTCGTTTACCACATGGCC	60.677	55.000	0.00	0.00	39.32	5.36
2539	2627	0.035439	CTCGTTTACCACATGGCCCT	60.035	55.000	0.00	0.00	39.32	5.19
2542	2630	1.173913	GTTTACCACATGGCCCTGTC	58.826	55.000	11.15	0.00	39.32	3.51
2597	2689	4.569719	TCATACTCCCTCCCTTTTTGTC	57.430	45.455	0.00	0.00	0.00	3.18
2643	2735	9.784680	CAAAATCATCAATTTGACAACCAAAAA	57.215	25.926	0.15	0.00	46.64	1.94
2715	2808	2.684881	GTCCATCCACTGCGATCAAATT	59.315	45.455	0.00	0.00	0.00	1.82
2718	2811	3.431856	CATCCACTGCGATCAAATTGTG	58.568	45.455	0.00	0.00	0.00	3.33
2733	2826	7.687941	TCAAATTGTGGGAGAAATAAGAGTC	57.312	36.000	0.00	0.00	0.00	3.36
2747	2840	6.777213	AATAAGAGTCACGAGGAGTTACAT	57.223	37.500	0.00	0.00	29.63	2.29
2748	2841	7.876936	AATAAGAGTCACGAGGAGTTACATA	57.123	36.000	0.00	0.00	29.63	2.29
2873	3170	2.735444	CGATACATGTCCTGTTCGCACT	60.735	50.000	0.00	0.00	39.39	4.40
2929	3226	5.009410	TCGTCGATAGTTCCCCTAGAAAATC	59.991	44.000	0.00	0.00	35.85	2.17
2930	3227	5.539979	GTCGATAGTTCCCCTAGAAAATCC	58.460	45.833	0.00	0.00	35.85	3.01
2931	3228	5.070047	GTCGATAGTTCCCCTAGAAAATCCA	59.930	44.000	0.00	0.00	35.85	3.41
2941	3255	5.795870	CCCCTAGAAAATCCATTCCCCTATA	59.204	44.000	0.00	0.00	0.00	1.31
2943	3257	7.631756	CCCCTAGAAAATCCATTCCCCTATATA	59.368	40.741	0.00	0.00	0.00	0.86
2954	3268	7.236847	TCCATTCCCCTATATATTCGAAACAGT	59.763	37.037	0.00	0.00	0.00	3.55
2989	3303	4.101448	AGCCACTGATGACCCCGC	62.101	66.667	0.00	0.00	0.00	6.13
3100	3431	1.495951	GACCGACGTTTGATGTGGC	59.504	57.895	0.00	0.00	0.00	5.01
3134	3467	1.332065	CGTCAAGAGCTAGATCGAGCA	59.668	52.381	26.72	5.71	45.43	4.26
3139	3472	0.932585	GAGCTAGATCGAGCACACGC	60.933	60.000	26.72	9.11	45.43	5.34
3140	3473	2.289375	GCTAGATCGAGCACACGCG	61.289	63.158	21.36	3.53	45.49	6.01
3142	3475	3.751401	TAGATCGAGCACACGCGGC	62.751	63.158	12.47	3.95	45.49	6.53
3214	3547	3.459063	GGCGTTACGGAGGAGGCT	61.459	66.667	6.94	0.00	0.00	4.58
3221	3554	2.285889	TACGGAGGAGGCTGGGAGAG	62.286	65.000	0.00	0.00	0.00	3.20
3277	3618	1.001887	TGCCTCATCATGCAGTGCA	60.002	52.632	22.22	22.22	44.86	4.57
3297	3638	0.320683	CGATGGTGAACTGGTGAGCA	60.321	55.000	0.00	0.00	0.00	4.26
3314	3655	1.284198	AGCATCCAAGAGGCAGTTGAT	59.716	47.619	3.92	0.00	42.11	2.57
3389	3736	2.972505	CGTCAAAGCGGCAGGTGT	60.973	61.111	1.45	0.00	0.00	4.16
3390	3737	2.542907	CGTCAAAGCGGCAGGTGTT	61.543	57.895	1.45	0.00	0.00	3.32
3411	3766	1.473278	GGAGTTCACCTCGGAGTACAG	59.527	57.143	4.02	0.00	41.46	2.74
3431	3786	5.297799	ACAGAGGTATATTTCCCCCTTCTT	58.702	41.667	0.00	0.00	0.00	2.52
3451	3866	4.690748	TCTTGGTGCTTTTGATTAGAGTCG	59.309	41.667	0.00	0.00	0.00	4.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
26	27	6.565435	CGAAATGCTGCACTCATAATTAGGAG	60.565	42.308	22.26	22.26	39.79	3.69
35	36	0.806868	CACCGAAATGCTGCACTCAT	59.193	50.000	3.57	0.00	0.00	2.90
55	56	1.065928	GGGTGTAGATGAGCGTCGG	59.934	63.158	0.00	0.00	0.00	4.79
59	60	0.172578	TGAACGGGTGTAGATGAGCG	59.827	55.000	0.00	0.00	0.00	5.03
60	61	1.476891	TCTGAACGGGTGTAGATGAGC	59.523	52.381	0.00	0.00	0.00	4.26
109	116	9.881649	TGCAATAAATTTTCTACCATGCATAAA	57.118	25.926	0.00	0.00	36.46	1.40
135	142	0.693049	AAAAGTGGAGCGGACCTCAT	59.307	50.000	0.00	0.00	42.62	2.90
155	162	8.016301	AGCTACTCAGATGTTCAAATGATCTA	57.984	34.615	0.00	0.00	0.00	1.98
221	228	7.910441	TTCGGGGTCTATAAAAAGTTTACTG	57.090	36.000	0.00	0.00	0.00	2.74
227	234	6.717997	ACACAAATTCGGGGTCTATAAAAAGT	59.282	34.615	0.00	0.00	0.00	2.66
264	272	4.449131	TCATTTGGACATCTGATCAGCTC	58.551	43.478	18.36	11.33	0.00	4.09
305	313	5.912892	TGGTAGATAATTTGATGCGTGAGA	58.087	37.500	0.00	0.00	0.00	3.27
384	392	1.918253	CCCAGGCTTATCTGCACCT	59.082	57.895	0.00	0.00	33.64	4.00
417	425	6.238402	GGGAAAATAGGTGAGAATTAAGCGAC	60.238	42.308	0.00	0.00	0.00	5.19
420	428	6.828785	TCTGGGAAAATAGGTGAGAATTAAGC	59.171	38.462	0.00	0.00	0.00	3.09
593	605	1.606668	TCGCTTTCCGTTTGAAGCATT	59.393	42.857	8.56	0.00	38.35	3.56
734	746	4.130118	CAGAATATACTTGGTGACAGCCC	58.870	47.826	1.47	0.00	44.54	5.19
805	818	9.460019	CTATTGGAAAGGAGAGAGAAGATTTTT	57.540	33.333	0.00	0.00	0.00	1.94
809	822	7.986553	TTCTATTGGAAAGGAGAGAGAAGAT	57.013	36.000	0.00	0.00	0.00	2.40
956	993	9.771534	GGATGCAAATTAGTAAGAGAAGAGTAT	57.228	33.333	0.00	0.00	0.00	2.12
979	1016	4.837093	TTCTTGTGATTTCGGGTAGGAT	57.163	40.909	0.00	0.00	0.00	3.24
1065	1104	2.203625	GGCCTTTTGCTGGTGGGA	60.204	61.111	0.00	0.00	40.92	4.37
1119	1158	1.480312	GCCATCTCCAGCCTCTCTAGA	60.480	57.143	0.00	0.00	0.00	2.43
1535	1574	7.727186	ACATTTGATATATCAGTGATTTGCCCT	59.273	33.333	25.10	7.83	38.19	5.19
1870	1914	1.026718	GGGCGAAACCATCTGACCAG	61.027	60.000	0.00	0.00	42.05	4.00
1922	1966	2.736995	TGTCGCTAGGCACAACGC	60.737	61.111	0.00	0.00	41.28	4.84
1989	2063	0.869880	GCCACAAAAACACTCCGCAC	60.870	55.000	0.00	0.00	0.00	5.34
2025	2107	1.693627	CCGGCAGGTCACTATACTCT	58.306	55.000	0.00	0.00	0.00	3.24
2031	2113	0.616395	TTGATCCCGGCAGGTCACTA	60.616	55.000	1.11	0.00	36.75	2.74
2129	2211	1.554583	GGGGTCCTCCAAGGAGTCAC	61.555	65.000	14.65	10.34	46.90	3.67
2435	2523	4.740822	ACCGCACCTGCCAATCCC	62.741	66.667	0.00	0.00	37.91	3.85
2479	2567	1.539827	ACGCACAACCCATAGCTTTTC	59.460	47.619	0.00	0.00	0.00	2.29
2484	2572	0.676782	AGGAACGCACAACCCATAGC	60.677	55.000	0.00	0.00	0.00	2.97
2597	2689	6.618287	TTTGAAACACATGTGACCTTCTAG	57.382	37.500	31.94	2.46	0.00	2.43
2715	2808	3.830178	TCGTGACTCTTATTTCTCCCACA	59.170	43.478	0.00	0.00	0.00	4.17
2718	2811	3.700038	TCCTCGTGACTCTTATTTCTCCC	59.300	47.826	0.00	0.00	0.00	4.30
2787	2880	5.445964	ACTAGCCCCACCATAATTTTGTAG	58.554	41.667	0.00	0.00	0.00	2.74
2873	3170	2.283173	TCAGGCCAGACAGCGAGA	60.283	61.111	5.01	0.00	0.00	4.04
2913	3210	4.079154	GGGAATGGATTTTCTAGGGGAACT	60.079	45.833	0.00	0.00	33.13	3.01
2929	3226	7.394816	ACTGTTTCGAATATATAGGGGAATGG	58.605	38.462	0.00	0.00	0.00	3.16
2930	3227	9.587772	CTACTGTTTCGAATATATAGGGGAATG	57.412	37.037	0.00	0.00	0.00	2.67
2931	3228	8.759782	CCTACTGTTTCGAATATATAGGGGAAT	58.240	37.037	14.09	0.00	0.00	3.01
2941	3255	7.396623	CCTATCCTACCCTACTGTTTCGAATAT	59.603	40.741	0.00	0.00	0.00	1.28
2943	3257	5.539193	CCTATCCTACCCTACTGTTTCGAAT	59.461	44.000	0.00	0.00	0.00	3.34
2950	3264	1.203025	CGCCCTATCCTACCCTACTGT	60.203	57.143	0.00	0.00	0.00	3.55
2954	3268	0.702902	CTCCGCCCTATCCTACCCTA	59.297	60.000	0.00	0.00	0.00	3.53
3002	3316	4.517934	CCTCGCCGACCCCCTCTA	62.518	72.222	0.00	0.00	0.00	2.43
3109	3440	0.382515	ATCTAGCTCTTGACGGCGAC	59.617	55.000	16.62	8.59	0.00	5.19
3143	3476	0.106318	TTCCTCTAGACGGCTACCCC	60.106	60.000	0.00	0.00	0.00	4.95
3144	3477	1.133853	TCTTCCTCTAGACGGCTACCC	60.134	57.143	0.00	0.00	0.00	3.69
3155	3488	2.624557	GGGTGCTCTTCCTCTTCCTCTA	60.625	54.545	0.00	0.00	0.00	2.43
3193	3526	2.672651	TCCTCCGTAACGCCACGA	60.673	61.111	10.64	0.00	44.69	4.35
3274	3615	0.884259	CACCAGTTCACCATCGTGCA	60.884	55.000	0.00	0.00	40.04	4.57
3277	3618	0.320771	GCTCACCAGTTCACCATCGT	60.321	55.000	0.00	0.00	0.00	3.73
3286	3627	1.004044	CCTCTTGGATGCTCACCAGTT	59.996	52.381	0.00	0.00	38.70	3.16
3289	3630	1.300963	GCCTCTTGGATGCTCACCA	59.699	57.895	0.00	0.00	34.57	4.17
3294	3635	0.694771	TCAACTGCCTCTTGGATGCT	59.305	50.000	0.00	0.00	34.57	3.79
3297	3638	1.745141	GCGATCAACTGCCTCTTGGAT	60.745	52.381	0.00	0.00	34.57	3.41
3324	3665	1.471676	CGCTGTATGAGAACCAGGGAC	60.472	57.143	0.00	0.00	40.45	4.46
3376	3723	1.898574	CTCCAACACCTGCCGCTTT	60.899	57.895	0.00	0.00	0.00	3.51
3377	3724	2.281761	CTCCAACACCTGCCGCTT	60.282	61.111	0.00	0.00	0.00	4.68
3389	3736	1.891150	GTACTCCGAGGTGAACTCCAA	59.109	52.381	0.00	0.00	43.57	3.53
3390	3737	1.202964	TGTACTCCGAGGTGAACTCCA	60.203	52.381	0.00	0.00	43.57	3.86
3411	3766	4.415846	ACCAAGAAGGGGGAAATATACCTC	59.584	45.833	0.00	0.00	43.89	3.85
3431	3786	3.244422	ACCGACTCTAATCAAAAGCACCA	60.244	43.478	0.00	0.00	0.00	4.17
3451	3866	4.459330	ACCGACTCTAATCACTACCTACC	58.541	47.826	0.00	0.00	0.00	3.18
3516	3931	5.032846	AGAGGTTCTGAATCCATCACCTTA	58.967	41.667	0.00	0.00	35.72	2.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.