Multiple sequence alignment - TraesCS3A01G480200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G480200 chr3A 100.000 3252 0 0 1 3252 711262011 711258760 0.000000e+00 6006.0
1 TraesCS3A01G480200 chr3A 91.626 1027 76 4 1319 2337 712552979 712554003 0.000000e+00 1411.0
2 TraesCS3A01G480200 chr3A 88.720 984 95 10 1270 2248 712545425 712546397 0.000000e+00 1188.0
3 TraesCS3A01G480200 chr3A 84.388 1185 144 26 1269 2429 711286390 711285223 0.000000e+00 1125.0
4 TraesCS3A01G480200 chr3A 95.522 67 2 1 241 307 711261710 711261645 4.440000e-19 106.0
5 TraesCS3A01G480200 chr3A 95.522 67 2 1 302 367 711261771 711261705 4.440000e-19 106.0
6 TraesCS3A01G480200 chr3D 91.561 2050 96 35 437 2429 575738780 575736751 0.000000e+00 2756.0
7 TraesCS3A01G480200 chr3D 88.701 1124 113 12 1319 2429 577250136 577251258 0.000000e+00 1360.0
8 TraesCS3A01G480200 chr3D 84.962 1177 139 29 1269 2429 575740560 575739406 0.000000e+00 1158.0
9 TraesCS3A01G480200 chr3D 88.755 249 22 3 2949 3194 575736350 575736105 1.900000e-77 300.0
10 TraesCS3A01G480200 chr3D 79.355 310 48 12 477 773 577249010 577249316 1.530000e-48 204.0
11 TraesCS3A01G480200 chr3D 86.364 88 4 5 1000 1086 577238423 577238503 4.470000e-14 89.8
12 TraesCS3A01G480200 chr3D 89.394 66 5 1 2883 2948 575736758 575736695 7.480000e-12 82.4
13 TraesCS3A01G480200 chr3D 95.238 42 0 2 1049 1088 575740735 575740694 7.530000e-07 65.8
14 TraesCS3A01G480200 chr3B 93.713 1352 69 7 996 2342 766643477 766642137 0.000000e+00 2012.0
15 TraesCS3A01G480200 chr3B 91.667 936 78 0 1319 2254 768741086 768740151 0.000000e+00 1297.0
16 TraesCS3A01G480200 chr3B 84.693 1189 137 30 1266 2429 766661563 766660395 0.000000e+00 1146.0
17 TraesCS3A01G480200 chr3B 88.624 545 33 10 434 968 766644000 766643475 1.270000e-178 636.0
18 TraesCS3A01G480200 chr3B 90.160 376 33 3 2502 2875 50023913 50024286 1.360000e-133 486.0
19 TraesCS3A01G480200 chr3B 86.538 156 15 3 477 626 768742061 768741906 2.010000e-37 167.0
20 TraesCS3A01G480200 chr3B 86.139 101 14 0 476 576 766662186 766662086 3.430000e-20 110.0
21 TraesCS3A01G480200 chr3B 100.000 33 0 0 3220 3252 622272219 622272187 9.740000e-06 62.1
22 TraesCS3A01G480200 chr3B 94.737 38 1 1 1049 1086 766661666 766661630 1.260000e-04 58.4
23 TraesCS3A01G480200 chr4A 95.765 307 13 0 1 307 162438846 162439152 2.250000e-136 496.0
24 TraesCS3A01G480200 chr4A 94.891 137 6 1 302 437 162439086 162439222 2.540000e-51 213.0
25 TraesCS3A01G480200 chr4D 89.867 375 36 2 2502 2875 391469388 391469761 6.310000e-132 481.0
26 TraesCS3A01G480200 chr1A 93.811 307 19 0 1 307 573906502 573906196 2.290000e-126 462.0
27 TraesCS3A01G480200 chr1A 91.971 137 10 1 302 437 491304773 491304637 1.190000e-44 191.0
28 TraesCS3A01G480200 chr2A 93.355 301 20 0 1 301 46106187 46106487 2.300000e-121 446.0
29 TraesCS3A01G480200 chr2A 93.130 131 9 0 307 437 46106433 46106563 3.310000e-45 193.0
30 TraesCS3A01G480200 chr6D 87.339 387 39 6 2505 2888 466983999 466983620 4.980000e-118 435.0
31 TraesCS3A01G480200 chr6D 85.959 292 35 4 2586 2875 81118801 81119088 1.130000e-79 307.0
32 TraesCS3A01G480200 chr6A 85.938 384 47 4 2502 2881 15372842 15372462 1.410000e-108 403.0
33 TraesCS3A01G480200 chr6A 89.231 65 6 1 2438 2502 15373021 15372958 2.690000e-11 80.5
34 TraesCS3A01G480200 chr7D 88.961 308 33 1 1 307 408464331 408464024 2.370000e-101 379.0
35 TraesCS3A01G480200 chr7D 85.821 134 17 2 302 433 408464091 408463958 1.220000e-29 141.0
36 TraesCS3A01G480200 chr4B 85.761 309 41 3 1 307 519504451 519504758 1.130000e-84 324.0
37 TraesCS3A01G480200 chr1B 84.385 301 41 6 1 297 473230944 473230646 1.140000e-74 291.0
38 TraesCS3A01G480200 chr2D 83.333 306 50 1 2 307 529019790 529019486 6.870000e-72 281.0
39 TraesCS3A01G480200 chr6B 84.387 269 41 1 2 269 567615295 567615027 2.490000e-66 263.0
40 TraesCS3A01G480200 chr5D 80.645 310 52 5 2 307 317450114 317450419 1.950000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G480200 chr3A 711258760 711262011 3251 True 2072.666667 6006 97.014667 1 3252 3 chr3A.!!$R2 3251
1 TraesCS3A01G480200 chr3A 712552979 712554003 1024 False 1411.000000 1411 91.626000 1319 2337 1 chr3A.!!$F2 1018
2 TraesCS3A01G480200 chr3A 712545425 712546397 972 False 1188.000000 1188 88.720000 1270 2248 1 chr3A.!!$F1 978
3 TraesCS3A01G480200 chr3A 711285223 711286390 1167 True 1125.000000 1125 84.388000 1269 2429 1 chr3A.!!$R1 1160
4 TraesCS3A01G480200 chr3D 575736105 575740735 4630 True 872.440000 2756 89.982000 437 3194 5 chr3D.!!$R1 2757
5 TraesCS3A01G480200 chr3D 577249010 577251258 2248 False 782.000000 1360 84.028000 477 2429 2 chr3D.!!$F2 1952
6 TraesCS3A01G480200 chr3B 766642137 766644000 1863 True 1324.000000 2012 91.168500 434 2342 2 chr3B.!!$R2 1908
7 TraesCS3A01G480200 chr3B 768740151 768742061 1910 True 732.000000 1297 89.102500 477 2254 2 chr3B.!!$R4 1777
8 TraesCS3A01G480200 chr3B 766660395 766662186 1791 True 438.133333 1146 88.523000 476 2429 3 chr3B.!!$R3 1953
9 TraesCS3A01G480200 chr6A 15372462 15373021 559 True 241.750000 403 87.584500 2438 2881 2 chr6A.!!$R1 443

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
427 428 0.100861 GGAAACCCTAGTCGCGAGAG 59.899 60.0 10.24 10.32 43.49 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2275 4271 0.64741 CGCAGCTTATTCGGACACAG 59.353 55.0 0.0 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.772060 GCATCTCCTTGTAAAAGGCTG 57.228 47.619 6.84 5.72 39.80 4.85
21 22 3.347216 GCATCTCCTTGTAAAAGGCTGA 58.653 45.455 6.84 8.07 39.80 4.26
23 24 4.201990 GCATCTCCTTGTAAAAGGCTGATG 60.202 45.833 26.55 26.55 44.19 3.07
34 35 4.625800 GCTGATGCCGAGAAGGTT 57.374 55.556 0.00 0.00 43.70 3.50
35 36 2.859992 GCTGATGCCGAGAAGGTTT 58.140 52.632 0.00 0.00 43.70 3.27
36 37 1.168714 GCTGATGCCGAGAAGGTTTT 58.831 50.000 0.00 0.00 43.70 2.43
37 38 1.135575 GCTGATGCCGAGAAGGTTTTG 60.136 52.381 0.00 0.00 43.70 2.44
38 39 2.154462 CTGATGCCGAGAAGGTTTTGT 58.846 47.619 0.00 0.00 43.70 2.83
39 40 2.151202 TGATGCCGAGAAGGTTTTGTC 58.849 47.619 0.00 0.00 43.70 3.18
40 41 1.128692 GATGCCGAGAAGGTTTTGTCG 59.871 52.381 0.49 0.49 46.27 4.35
45 46 3.991605 CGAGAAGGTTTTGTCGGTATG 57.008 47.619 0.00 0.00 43.89 2.39
46 47 3.581755 CGAGAAGGTTTTGTCGGTATGA 58.418 45.455 0.00 0.00 43.89 2.15
47 48 3.991773 CGAGAAGGTTTTGTCGGTATGAA 59.008 43.478 0.00 0.00 43.89 2.57
48 49 4.143179 CGAGAAGGTTTTGTCGGTATGAAC 60.143 45.833 0.00 0.00 43.89 3.18
50 51 2.786777 AGGTTTTGTCGGTATGAACCC 58.213 47.619 0.00 0.00 43.54 4.11
51 52 2.374170 AGGTTTTGTCGGTATGAACCCT 59.626 45.455 0.00 0.00 43.54 4.34
54 55 2.973694 TTGTCGGTATGAACCCTAGC 57.026 50.000 0.00 0.00 43.54 3.42
55 56 1.855295 TGTCGGTATGAACCCTAGCA 58.145 50.000 0.00 0.00 43.54 3.49
56 57 2.181125 TGTCGGTATGAACCCTAGCAA 58.819 47.619 0.00 0.00 43.54 3.91
57 58 2.167693 TGTCGGTATGAACCCTAGCAAG 59.832 50.000 0.00 0.00 43.54 4.01
71 72 2.636299 GCAAGGGCTAACCAACGAA 58.364 52.632 0.00 0.00 43.89 3.85
72 73 0.240145 GCAAGGGCTAACCAACGAAC 59.760 55.000 0.00 0.00 43.89 3.95
73 74 0.515564 CAAGGGCTAACCAACGAACG 59.484 55.000 0.00 0.00 43.89 3.95
74 75 1.232621 AAGGGCTAACCAACGAACGC 61.233 55.000 0.00 0.00 43.89 4.84
76 77 1.632948 GGGCTAACCAACGAACGCTC 61.633 60.000 0.00 0.00 39.85 5.03
78 79 0.714439 GCTAACCAACGAACGCTCTC 59.286 55.000 0.00 0.00 0.00 3.20
81 82 1.499049 AACCAACGAACGCTCTCTTC 58.501 50.000 0.00 0.00 0.00 2.87
82 83 0.663568 ACCAACGAACGCTCTCTTCG 60.664 55.000 3.84 3.84 44.90 3.79
83 84 0.386858 CCAACGAACGCTCTCTTCGA 60.387 55.000 11.46 0.00 42.57 3.71
84 85 1.618861 CAACGAACGCTCTCTTCGAT 58.381 50.000 11.46 0.00 42.57 3.59
85 86 1.986378 CAACGAACGCTCTCTTCGATT 59.014 47.619 11.46 1.08 42.57 3.34
86 87 2.349297 ACGAACGCTCTCTTCGATTT 57.651 45.000 11.46 0.00 42.57 2.17
87 88 2.251893 ACGAACGCTCTCTTCGATTTC 58.748 47.619 11.46 0.00 42.57 2.17
88 89 1.584308 CGAACGCTCTCTTCGATTTCC 59.416 52.381 0.00 0.00 42.57 3.13
89 90 1.584308 GAACGCTCTCTTCGATTTCCG 59.416 52.381 0.00 0.00 40.25 4.30
90 91 0.179134 ACGCTCTCTTCGATTTCCGG 60.179 55.000 0.00 0.00 39.14 5.14
91 92 0.872021 CGCTCTCTTCGATTTCCGGG 60.872 60.000 0.00 0.00 39.14 5.73
94 95 0.454600 TCTCTTCGATTTCCGGGTCG 59.545 55.000 15.56 15.56 39.14 4.79
96 97 0.171903 TCTTCGATTTCCGGGTCGTC 59.828 55.000 19.20 6.01 38.85 4.20
97 98 0.108992 CTTCGATTTCCGGGTCGTCA 60.109 55.000 19.20 10.18 38.85 4.35
98 99 0.533491 TTCGATTTCCGGGTCGTCAT 59.467 50.000 19.20 0.00 38.85 3.06
99 100 0.101759 TCGATTTCCGGGTCGTCATC 59.898 55.000 19.20 5.44 38.85 2.92
101 102 1.538204 CGATTTCCGGGTCGTCATCAT 60.538 52.381 0.00 0.00 33.42 2.45
102 103 2.135933 GATTTCCGGGTCGTCATCATC 58.864 52.381 0.00 0.00 0.00 2.92
103 104 0.899019 TTTCCGGGTCGTCATCATCA 59.101 50.000 0.00 0.00 0.00 3.07
105 106 1.119684 TCCGGGTCGTCATCATCAAT 58.880 50.000 0.00 0.00 0.00 2.57
107 108 1.069204 CCGGGTCGTCATCATCAATCT 59.931 52.381 0.00 0.00 0.00 2.40
109 110 2.760374 GGGTCGTCATCATCAATCTCC 58.240 52.381 0.00 0.00 0.00 3.71
110 111 2.103094 GGGTCGTCATCATCAATCTCCA 59.897 50.000 0.00 0.00 0.00 3.86
111 112 3.126831 GGTCGTCATCATCAATCTCCAC 58.873 50.000 0.00 0.00 0.00 4.02
114 115 4.447054 GTCGTCATCATCAATCTCCACATC 59.553 45.833 0.00 0.00 0.00 3.06
115 116 4.099881 TCGTCATCATCAATCTCCACATCA 59.900 41.667 0.00 0.00 0.00 3.07
116 117 4.995487 CGTCATCATCAATCTCCACATCAT 59.005 41.667 0.00 0.00 0.00 2.45
117 118 5.120363 CGTCATCATCAATCTCCACATCATC 59.880 44.000 0.00 0.00 0.00 2.92
119 120 6.485648 GTCATCATCAATCTCCACATCATCAA 59.514 38.462 0.00 0.00 0.00 2.57
120 121 7.012989 GTCATCATCAATCTCCACATCATCAAA 59.987 37.037 0.00 0.00 0.00 2.69
121 122 7.724061 TCATCATCAATCTCCACATCATCAAAT 59.276 33.333 0.00 0.00 0.00 2.32
122 123 7.891498 TCATCAATCTCCACATCATCAAATT 57.109 32.000 0.00 0.00 0.00 1.82
123 124 7.937649 TCATCAATCTCCACATCATCAAATTC 58.062 34.615 0.00 0.00 0.00 2.17
125 126 7.949690 TCAATCTCCACATCATCAAATTCTT 57.050 32.000 0.00 0.00 0.00 2.52
126 127 7.993101 TCAATCTCCACATCATCAAATTCTTC 58.007 34.615 0.00 0.00 0.00 2.87
127 128 6.956202 ATCTCCACATCATCAAATTCTTCC 57.044 37.500 0.00 0.00 0.00 3.46
129 130 6.118170 TCTCCACATCATCAAATTCTTCCTC 58.882 40.000 0.00 0.00 0.00 3.71
130 131 5.818887 TCCACATCATCAAATTCTTCCTCA 58.181 37.500 0.00 0.00 0.00 3.86
132 133 6.893554 TCCACATCATCAAATTCTTCCTCATT 59.106 34.615 0.00 0.00 0.00 2.57
133 134 6.978659 CCACATCATCAAATTCTTCCTCATTG 59.021 38.462 0.00 0.00 0.00 2.82
135 136 7.915923 CACATCATCAAATTCTTCCTCATTGAG 59.084 37.037 6.70 6.70 33.91 3.02
137 138 8.851145 CATCATCAAATTCTTCCTCATTGAGAT 58.149 33.333 15.36 0.00 33.91 2.75
138 139 8.447924 TCATCAAATTCTTCCTCATTGAGATC 57.552 34.615 15.36 0.00 33.91 2.75
139 140 7.501559 TCATCAAATTCTTCCTCATTGAGATCC 59.498 37.037 15.36 0.00 33.91 3.36
140 141 6.724351 TCAAATTCTTCCTCATTGAGATCCA 58.276 36.000 15.36 0.00 0.00 3.41
142 143 7.121759 TCAAATTCTTCCTCATTGAGATCCAAC 59.878 37.037 15.36 0.00 37.63 3.77
143 144 5.768980 TTCTTCCTCATTGAGATCCAACT 57.231 39.130 15.36 0.00 37.63 3.16
144 145 5.095145 TCTTCCTCATTGAGATCCAACTG 57.905 43.478 15.36 0.00 37.63 3.16
145 146 3.920231 TCCTCATTGAGATCCAACTGG 57.080 47.619 15.36 0.00 37.63 4.00
147 148 3.198635 TCCTCATTGAGATCCAACTGGTC 59.801 47.826 15.36 0.00 37.63 4.02
149 150 2.831526 TCATTGAGATCCAACTGGTCGA 59.168 45.455 0.00 0.00 37.63 4.20
150 151 3.260632 TCATTGAGATCCAACTGGTCGAA 59.739 43.478 0.00 0.00 37.63 3.71
152 153 2.525368 TGAGATCCAACTGGTCGAAGA 58.475 47.619 0.00 0.00 36.34 2.87
153 154 2.897326 TGAGATCCAACTGGTCGAAGAA 59.103 45.455 0.00 0.00 39.69 2.52
155 156 2.900546 AGATCCAACTGGTCGAAGAAGT 59.099 45.455 0.00 0.00 39.69 3.01
158 159 3.881220 TCCAACTGGTCGAAGAAGTTTT 58.119 40.909 6.03 0.00 35.65 2.43
160 161 3.877508 CCAACTGGTCGAAGAAGTTTTCT 59.122 43.478 6.03 0.00 35.65 2.52
161 162 5.054477 CCAACTGGTCGAAGAAGTTTTCTA 58.946 41.667 6.03 0.00 35.65 2.10
163 164 5.786264 ACTGGTCGAAGAAGTTTTCTAGA 57.214 39.130 0.00 0.00 39.61 2.43
165 166 6.391537 ACTGGTCGAAGAAGTTTTCTAGATC 58.608 40.000 0.00 0.00 39.61 2.75
166 167 5.399858 TGGTCGAAGAAGTTTTCTAGATCG 58.600 41.667 0.00 0.00 39.61 3.69
167 168 4.799428 GGTCGAAGAAGTTTTCTAGATCGG 59.201 45.833 7.93 0.00 39.61 4.18
168 169 4.799428 GTCGAAGAAGTTTTCTAGATCGGG 59.201 45.833 7.93 0.00 39.61 5.14
169 170 4.703575 TCGAAGAAGTTTTCTAGATCGGGA 59.296 41.667 7.93 0.00 39.61 5.14
171 172 5.688176 CGAAGAAGTTTTCTAGATCGGGATC 59.312 44.000 0.00 0.31 39.61 3.36
173 174 6.155475 AGAAGTTTTCTAGATCGGGATCTG 57.845 41.667 18.96 10.37 46.80 2.90
174 175 4.329462 AGTTTTCTAGATCGGGATCTGC 57.671 45.455 18.96 4.90 46.80 4.26
175 176 3.706594 AGTTTTCTAGATCGGGATCTGCA 59.293 43.478 18.96 4.75 46.80 4.41
176 177 4.054671 GTTTTCTAGATCGGGATCTGCAG 58.945 47.826 18.96 7.63 46.80 4.41
177 178 2.666272 TCTAGATCGGGATCTGCAGT 57.334 50.000 18.96 0.42 46.80 4.40
178 179 2.950781 TCTAGATCGGGATCTGCAGTT 58.049 47.619 18.96 5.03 46.80 3.16
179 180 2.625314 TCTAGATCGGGATCTGCAGTTG 59.375 50.000 18.96 0.46 46.80 3.16
180 181 0.179062 AGATCGGGATCTGCAGTTGC 60.179 55.000 14.67 10.88 45.77 4.17
182 183 4.942149 AGATCGGGATCTGCAGTTGCAC 62.942 54.545 14.67 4.54 45.77 4.57
203 204 3.505184 CGCCGCCACCATAACCAC 61.505 66.667 0.00 0.00 0.00 4.16
204 205 3.138128 GCCGCCACCATAACCACC 61.138 66.667 0.00 0.00 0.00 4.61
207 208 2.978946 CGCCACCATAACCACCCCT 61.979 63.158 0.00 0.00 0.00 4.79
208 209 1.628238 CGCCACCATAACCACCCCTA 61.628 60.000 0.00 0.00 0.00 3.53
209 210 0.106868 GCCACCATAACCACCCCTAC 60.107 60.000 0.00 0.00 0.00 3.18
210 211 0.549469 CCACCATAACCACCCCTACC 59.451 60.000 0.00 0.00 0.00 3.18
211 212 1.291109 CACCATAACCACCCCTACCA 58.709 55.000 0.00 0.00 0.00 3.25
212 213 1.064979 CACCATAACCACCCCTACCAC 60.065 57.143 0.00 0.00 0.00 4.16
213 214 0.549469 CCATAACCACCCCTACCACC 59.451 60.000 0.00 0.00 0.00 4.61
214 215 0.179468 CATAACCACCCCTACCACCG 59.821 60.000 0.00 0.00 0.00 4.94
215 216 1.629181 ATAACCACCCCTACCACCGC 61.629 60.000 0.00 0.00 0.00 5.68
218 219 3.407967 CACCCCTACCACCGCCAT 61.408 66.667 0.00 0.00 0.00 4.40
220 221 4.235762 CCCCTACCACCGCCATCG 62.236 72.222 0.00 0.00 0.00 3.84
221 222 3.467226 CCCTACCACCGCCATCGT 61.467 66.667 0.00 0.00 0.00 3.73
227 228 3.487202 CACCGCCATCGTTGGTCG 61.487 66.667 13.90 15.78 45.57 4.79
232 233 2.885644 CCATCGTTGGTCGCCGAG 60.886 66.667 4.23 0.00 38.30 4.63
233 234 2.126071 CATCGTTGGTCGCCGAGT 60.126 61.111 0.00 0.00 39.67 4.18
234 235 1.736645 CATCGTTGGTCGCCGAGTT 60.737 57.895 0.00 0.00 39.67 3.01
237 238 3.774702 GTTGGTCGCCGAGTTCGC 61.775 66.667 0.00 0.00 38.18 4.70
238 239 4.287781 TTGGTCGCCGAGTTCGCA 62.288 61.111 0.00 0.00 38.18 5.10
240 241 3.255379 GGTCGCCGAGTTCGCATC 61.255 66.667 0.00 0.00 38.18 3.91
242 243 4.847516 TCGCCGAGTTCGCATCCG 62.848 66.667 0.00 0.00 38.18 4.18
244 245 2.956964 GCCGAGTTCGCATCCGAG 60.957 66.667 0.00 0.00 45.35 4.63
246 247 2.771639 CCGAGTTCGCATCCGAGGA 61.772 63.158 0.00 0.00 45.35 3.71
247 248 1.298713 CGAGTTCGCATCCGAGGAG 60.299 63.158 0.00 0.00 45.35 3.69
264 265 3.467226 GGAGGCCATCCCGAACGA 61.467 66.667 5.01 0.00 43.01 3.85
266 267 3.447025 GAGGCCATCCCGAACGAGG 62.447 68.421 5.01 0.00 39.21 4.63
269 270 3.833645 CCATCCCGAACGAGGCGA 61.834 66.667 0.00 0.00 0.00 5.54
273 274 3.803082 CCCGAACGAGGCGACGTA 61.803 66.667 12.28 0.00 45.83 3.57
287 288 3.908737 ACGTAGTGCAGGGAGAAAC 57.091 52.632 0.00 0.00 42.51 2.78
288 289 0.320697 ACGTAGTGCAGGGAGAAACC 59.679 55.000 0.00 0.00 42.51 3.27
324 325 2.582436 GGAAGCCATCCCGAACGA 59.418 61.111 0.00 0.00 43.00 3.85
325 326 1.521681 GGAAGCCATCCCGAACGAG 60.522 63.158 0.00 0.00 43.00 4.18
326 327 1.521681 GAAGCCATCCCGAACGAGG 60.522 63.158 0.00 0.00 0.00 4.63
327 328 3.682292 AAGCCATCCCGAACGAGGC 62.682 63.158 0.00 0.00 45.54 4.70
329 330 3.833645 CCATCCCGAACGAGGCGA 61.834 66.667 0.00 0.00 0.00 5.54
330 331 2.582498 CATCCCGAACGAGGCGAC 60.582 66.667 0.00 0.00 0.00 5.19
333 334 3.803082 CCCGAACGAGGCGACGTA 61.803 66.667 12.28 0.00 45.83 3.57
348 349 0.320697 ACGTAGTGCAGGGAGAAACC 59.679 55.000 0.00 0.00 42.51 3.27
368 369 4.222847 GTGAGGGTCGCCGGGATC 62.223 72.222 2.18 0.00 0.00 3.36
380 381 3.727419 CGGGATCGGACGTAAAACT 57.273 52.632 0.00 0.00 0.00 2.66
381 382 1.553308 CGGGATCGGACGTAAAACTC 58.447 55.000 0.00 0.00 0.00 3.01
382 383 1.133790 CGGGATCGGACGTAAAACTCT 59.866 52.381 0.00 0.00 0.00 3.24
383 384 2.537401 GGGATCGGACGTAAAACTCTG 58.463 52.381 0.00 0.00 0.00 3.35
384 385 2.165030 GGGATCGGACGTAAAACTCTGA 59.835 50.000 0.00 0.00 0.00 3.27
387 388 1.542915 TCGGACGTAAAACTCTGAGGG 59.457 52.381 9.85 0.00 0.00 4.30
388 389 1.403780 CGGACGTAAAACTCTGAGGGG 60.404 57.143 9.85 0.00 0.00 4.79
389 390 1.897802 GGACGTAAAACTCTGAGGGGA 59.102 52.381 9.85 0.00 0.00 4.81
390 391 2.353505 GGACGTAAAACTCTGAGGGGAC 60.354 54.545 9.85 0.96 0.00 4.46
391 392 1.271656 ACGTAAAACTCTGAGGGGACG 59.728 52.381 9.85 14.10 35.30 4.79
392 393 1.542915 CGTAAAACTCTGAGGGGACGA 59.457 52.381 9.85 0.00 0.00 4.20
394 395 1.718280 AAAACTCTGAGGGGACGAGT 58.282 50.000 9.85 0.00 39.53 4.18
395 396 1.258676 AAACTCTGAGGGGACGAGTC 58.741 55.000 9.85 0.00 37.04 3.36
396 397 0.961358 AACTCTGAGGGGACGAGTCG 60.961 60.000 11.85 11.85 37.04 4.18
397 398 2.750637 TCTGAGGGGACGAGTCGC 60.751 66.667 13.59 11.23 41.23 5.19
404 405 2.766400 GGGACGAGTCGCCTCAGAG 61.766 68.421 13.59 0.00 37.59 3.35
405 406 2.766400 GGACGAGTCGCCTCAGAGG 61.766 68.421 13.59 12.81 37.59 3.69
406 407 1.745864 GACGAGTCGCCTCAGAGGA 60.746 63.158 21.89 0.00 37.67 3.71
409 410 1.813192 GAGTCGCCTCAGAGGAAGG 59.187 63.158 21.89 8.39 37.67 3.46
410 411 0.681564 GAGTCGCCTCAGAGGAAGGA 60.682 60.000 21.89 10.69 37.67 3.36
411 412 0.251832 AGTCGCCTCAGAGGAAGGAA 60.252 55.000 21.89 0.00 37.67 3.36
412 413 0.608640 GTCGCCTCAGAGGAAGGAAA 59.391 55.000 21.89 0.00 37.67 3.13
413 414 0.608640 TCGCCTCAGAGGAAGGAAAC 59.391 55.000 21.89 0.00 37.67 2.78
417 418 2.834113 CCTCAGAGGAAGGAAACCCTA 58.166 52.381 11.62 0.00 37.67 3.53
418 419 2.769095 CCTCAGAGGAAGGAAACCCTAG 59.231 54.545 11.62 0.00 37.67 3.02
419 420 3.445987 CTCAGAGGAAGGAAACCCTAGT 58.554 50.000 0.00 0.00 32.65 2.57
420 421 3.442076 TCAGAGGAAGGAAACCCTAGTC 58.558 50.000 0.00 0.00 32.65 2.59
421 422 2.166664 CAGAGGAAGGAAACCCTAGTCG 59.833 54.545 0.00 0.00 32.65 4.18
422 423 0.903236 AGGAAGGAAACCCTAGTCGC 59.097 55.000 0.00 0.00 32.65 5.19
424 425 0.529378 GAAGGAAACCCTAGTCGCGA 59.471 55.000 3.71 3.71 32.65 5.87
425 426 0.531200 AAGGAAACCCTAGTCGCGAG 59.469 55.000 10.24 0.00 32.65 5.03
426 427 0.323178 AGGAAACCCTAGTCGCGAGA 60.323 55.000 10.24 0.00 31.78 4.04
427 428 0.100861 GGAAACCCTAGTCGCGAGAG 59.899 60.000 10.24 10.32 43.49 3.20
440 441 1.739049 CGAGAGCTAGGGGAAGCAG 59.261 63.158 0.00 0.00 45.30 4.24
463 1983 4.169508 CGTACTCTCAGTCCTTGTTGATG 58.830 47.826 0.00 0.00 0.00 3.07
464 1984 4.321304 CGTACTCTCAGTCCTTGTTGATGT 60.321 45.833 0.00 0.00 0.00 3.06
465 1985 4.696479 ACTCTCAGTCCTTGTTGATGTT 57.304 40.909 0.00 0.00 0.00 2.71
473 1993 4.757149 AGTCCTTGTTGATGTTACTTGCTC 59.243 41.667 0.00 0.00 0.00 4.26
489 2009 1.230324 GCTCGAGGAAGCAACAAAGT 58.770 50.000 15.58 0.00 42.05 2.66
601 2127 1.659954 GCGCGGCTCTCTCTGTATG 60.660 63.158 8.83 0.00 0.00 2.39
663 2189 1.817209 GACGACCTCATCACTCCCC 59.183 63.158 0.00 0.00 0.00 4.81
722 2287 4.832608 GCCGGACCGATGGTGACC 62.833 72.222 17.49 0.00 35.25 4.02
794 2400 0.389948 ACTTAGCACGTACAGCAGGC 60.390 55.000 9.63 0.00 0.00 4.85
795 2401 1.079405 TTAGCACGTACAGCAGGCC 60.079 57.895 9.63 0.00 0.00 5.19
825 2433 1.000394 GTGGTGGAAAATGGAAACGGG 60.000 52.381 0.00 0.00 0.00 5.28
862 2479 2.411765 CTGGTGGTGGACCTGGAACC 62.412 65.000 0.00 5.86 46.32 3.62
926 2576 7.478322 CAGTGCTGAGAATTTGCATATAAAGT 58.522 34.615 0.00 0.00 39.00 2.66
964 2614 9.494271 CTGGTATAGAATACATACACTGCATTT 57.506 33.333 0.00 0.00 31.67 2.32
1032 2700 2.575461 GTTGCTCCCATGCTTGCC 59.425 61.111 0.00 0.00 0.00 4.52
1036 2704 3.818787 CTCCCATGCTTGCCGTGC 61.819 66.667 0.00 0.00 0.00 5.34
1037 2705 4.657408 TCCCATGCTTGCCGTGCA 62.657 61.111 0.00 0.00 44.95 4.57
1038 2706 4.124351 CCCATGCTTGCCGTGCAG 62.124 66.667 0.00 0.00 44.04 4.41
1180 3063 1.273327 GCATAAAAGGGTGCAGTGCTT 59.727 47.619 17.60 3.36 40.94 3.91
1287 3242 8.280497 ACGTACACAAGAAATCAAACTCATTAC 58.720 33.333 0.00 0.00 0.00 1.89
1288 3243 8.495949 CGTACACAAGAAATCAAACTCATTACT 58.504 33.333 0.00 0.00 0.00 2.24
1657 3644 0.999406 CGGCCATGAAGAACGTACAG 59.001 55.000 2.24 0.00 0.00 2.74
1737 3724 1.518056 GACGTGGTCACCGACACCTA 61.518 60.000 0.00 0.00 34.66 3.08
1787 3774 1.071471 GACTACATGGGGCCCATCG 59.929 63.158 35.33 28.89 43.15 3.84
1949 3939 2.900546 CTGACCTACACCAACCTCTTCT 59.099 50.000 0.00 0.00 0.00 2.85
2050 4040 2.264794 CCGTCGGCTAGTGGCTTT 59.735 61.111 0.00 0.00 41.46 3.51
2061 4051 4.028490 TGGCTTTGGGGCGACGAT 62.028 61.111 0.00 0.00 44.11 3.73
2261 4257 3.466712 TTAGCTTCTGAGTACACGACG 57.533 47.619 0.00 0.00 0.00 5.12
2263 4259 1.197264 AGCTTCTGAGTACACGACGAC 59.803 52.381 0.00 0.00 0.00 4.34
2266 4262 1.134075 CTGAGTACACGACGACCGG 59.866 63.158 0.00 0.00 43.93 5.28
2275 4271 0.383231 ACGACGACCGGTGGATATTC 59.617 55.000 24.54 9.18 43.93 1.75
2343 4358 1.062002 CAACCACTCGTGTGTGTGTTC 59.938 52.381 15.79 0.00 42.34 3.18
2344 4359 0.248012 ACCACTCGTGTGTGTGTTCA 59.752 50.000 15.79 0.00 42.34 3.18
2345 4360 1.338294 ACCACTCGTGTGTGTGTTCAA 60.338 47.619 15.79 0.00 42.34 2.69
2348 4363 3.181501 CCACTCGTGTGTGTGTTCAATTT 60.182 43.478 15.79 0.00 42.34 1.82
2429 4449 6.695278 CCACCTTTTACATGCCATATTTTACG 59.305 38.462 0.00 0.00 0.00 3.18
2430 4450 6.695278 CACCTTTTACATGCCATATTTTACGG 59.305 38.462 0.00 0.00 0.00 4.02
2431 4451 6.183360 ACCTTTTACATGCCATATTTTACGGG 60.183 38.462 0.00 0.00 0.00 5.28
2432 4452 6.039941 CCTTTTACATGCCATATTTTACGGGA 59.960 38.462 0.00 0.00 0.00 5.14
2433 4453 7.406031 TTTTACATGCCATATTTTACGGGAA 57.594 32.000 0.00 0.00 0.00 3.97
2434 4454 6.627395 TTACATGCCATATTTTACGGGAAG 57.373 37.500 0.00 0.00 0.00 3.46
2435 4455 4.787551 ACATGCCATATTTTACGGGAAGA 58.212 39.130 0.00 0.00 0.00 2.87
2436 4456 5.385198 ACATGCCATATTTTACGGGAAGAT 58.615 37.500 0.00 0.00 0.00 2.40
2444 4464 7.603024 CCATATTTTACGGGAAGATCTTAGGTC 59.397 40.741 8.25 0.00 0.00 3.85
2445 4465 5.349061 TTTTACGGGAAGATCTTAGGTCC 57.651 43.478 8.25 5.22 0.00 4.46
2474 4494 3.501950 GGAAAACTCAAACGCATCATCC 58.498 45.455 0.00 0.00 0.00 3.51
2477 4497 0.391661 ACTCAAACGCATCATCCGCT 60.392 50.000 0.00 0.00 0.00 5.52
2479 4499 1.131126 CTCAAACGCATCATCCGCTTT 59.869 47.619 0.00 0.00 0.00 3.51
2482 4502 2.309528 AACGCATCATCCGCTTTCTA 57.690 45.000 0.00 0.00 0.00 2.10
2496 4516 3.059868 CGCTTTCTATGAACAACACGTGT 60.060 43.478 17.22 17.22 44.64 4.49
2499 4519 3.034721 TCTATGAACAACACGTGTCCC 57.965 47.619 23.61 11.63 40.60 4.46
2514 4649 6.183360 ACACGTGTCCCAAACAAAATATTTCT 60.183 34.615 17.22 0.00 40.31 2.52
2519 4654 7.011857 GTGTCCCAAACAAAATATTTCTGCAAA 59.988 33.333 0.10 0.00 40.31 3.68
2574 4709 1.537990 CCCCGTTGCAAAAAGGTGAAG 60.538 52.381 0.00 0.00 0.00 3.02
2580 4715 4.265320 CGTTGCAAAAAGGTGAAGAAGAAC 59.735 41.667 0.00 0.00 0.00 3.01
2591 4726 5.812127 AGGTGAAGAAGAACAAAATTGCAAC 59.188 36.000 0.00 0.00 0.00 4.17
2598 4733 5.083533 AGAACAAAATTGCAACAAGACCA 57.916 34.783 0.00 0.00 0.00 4.02
2605 4740 8.200792 ACAAAATTGCAACAAGACCACTATTAA 58.799 29.630 0.00 0.00 0.00 1.40
2608 4743 9.606631 AAATTGCAACAAGACCACTATTAAAAA 57.393 25.926 0.00 0.00 0.00 1.94
2633 4768 6.403866 AAATCTGCAACATGACCTTTGTTA 57.596 33.333 0.00 0.00 35.61 2.41
2638 4773 5.105752 TGCAACATGACCTTTGTTACAAAC 58.894 37.500 6.41 0.00 35.61 2.93
2656 4795 5.108517 ACAAACAAATTGCAACACGATCTT 58.891 33.333 0.00 0.00 43.13 2.40
2673 4812 4.207019 CGATCTTTGTTGCAAAAAGGTGAC 59.793 41.667 22.53 11.65 35.71 3.67
2678 4817 3.351740 TGTTGCAAAAAGGTGACTGAGA 58.648 40.909 0.00 0.00 42.68 3.27
2747 4886 1.676967 CCTTGTTGCAGAGGGCCTC 60.677 63.158 26.42 26.42 43.89 4.70
2748 4887 1.676967 CTTGTTGCAGAGGGCCTCC 60.677 63.158 29.62 16.01 43.89 4.30
2758 4897 4.284550 GGGCCTCCTGCAACACCA 62.285 66.667 0.84 0.00 43.89 4.17
2764 4903 1.347707 CCTCCTGCAACACCACTCTTA 59.652 52.381 0.00 0.00 0.00 2.10
2771 4910 4.178545 GCAACACCACTCTTATTGCAAT 57.821 40.909 17.56 17.56 44.01 3.56
2773 4912 4.321156 GCAACACCACTCTTATTGCAATGA 60.321 41.667 22.27 13.07 44.01 2.57
2785 4924 3.435105 TTGCAATGAGTGGTTGTTCAC 57.565 42.857 0.00 0.00 37.89 3.18
2798 4937 2.858344 GTTGTTCACGTGGATAGATCGG 59.142 50.000 17.00 0.00 0.00 4.18
2809 4948 5.411781 GTGGATAGATCGGATGACCATTAC 58.588 45.833 0.00 0.00 35.59 1.89
2811 4950 4.466370 GGATAGATCGGATGACCATTACCA 59.534 45.833 0.00 0.00 35.59 3.25
2843 4982 2.818132 CTGGAGAGGCGGTGGATC 59.182 66.667 0.00 0.00 0.00 3.36
2862 5001 6.296026 TGGATCTTTTCTTATTATCCACGGG 58.704 40.000 0.00 0.00 40.84 5.28
2881 5020 2.579787 CGACGCCTAGCACTTCCG 60.580 66.667 0.00 0.00 0.00 4.30
2882 5021 2.572284 GACGCCTAGCACTTCCGT 59.428 61.111 0.00 0.00 34.52 4.69
2883 5022 1.805254 GACGCCTAGCACTTCCGTA 59.195 57.895 0.00 0.00 31.65 4.02
2884 5023 0.384669 GACGCCTAGCACTTCCGTAT 59.615 55.000 0.00 0.00 31.65 3.06
2885 5024 0.822164 ACGCCTAGCACTTCCGTATT 59.178 50.000 0.00 0.00 0.00 1.89
2886 5025 1.206371 ACGCCTAGCACTTCCGTATTT 59.794 47.619 0.00 0.00 0.00 1.40
2887 5026 2.277084 CGCCTAGCACTTCCGTATTTT 58.723 47.619 0.00 0.00 0.00 1.82
2888 5027 3.119029 ACGCCTAGCACTTCCGTATTTTA 60.119 43.478 0.00 0.00 0.00 1.52
2889 5028 3.244579 CGCCTAGCACTTCCGTATTTTAC 59.755 47.826 0.00 0.00 0.00 2.01
2890 5029 4.439968 GCCTAGCACTTCCGTATTTTACT 58.560 43.478 0.00 0.00 0.00 2.24
2891 5030 4.507021 GCCTAGCACTTCCGTATTTTACTC 59.493 45.833 0.00 0.00 0.00 2.59
2926 5065 3.766051 GTCAATTTTGCTCCATTCTCCCT 59.234 43.478 0.00 0.00 0.00 4.20
2929 5068 2.205022 TTTGCTCCATTCTCCCTGTG 57.795 50.000 0.00 0.00 0.00 3.66
2931 5070 0.842030 TGCTCCATTCTCCCTGTGGT 60.842 55.000 0.00 0.00 34.61 4.16
2937 5076 0.253160 ATTCTCCCTGTGGTGGCCTA 60.253 55.000 3.32 0.00 0.00 3.93
2964 5447 2.029110 GCCAATAACTCAGCTGCCAAAA 60.029 45.455 9.47 0.00 0.00 2.44
2973 5456 1.518133 GCTGCCAAAACAACGTGCA 60.518 52.632 0.00 0.00 0.00 4.57
2977 5460 0.100503 GCCAAAACAACGTGCAGTCT 59.899 50.000 0.00 0.00 0.00 3.24
3011 5494 9.500785 TTCCTTTTCAGTTGTTGAATTCTTTTT 57.499 25.926 7.05 0.00 44.90 1.94
3222 5708 9.872721 GTTACCATATATCTTAACTCCTAAGCC 57.127 37.037 6.01 0.00 37.51 4.35
3223 5709 9.610104 TTACCATATATCTTAACTCCTAAGCCA 57.390 33.333 0.00 0.00 37.51 4.75
3224 5710 8.686739 ACCATATATCTTAACTCCTAAGCCAT 57.313 34.615 0.00 0.00 37.51 4.40
3225 5711 8.763601 ACCATATATCTTAACTCCTAAGCCATC 58.236 37.037 0.00 0.00 37.51 3.51
3226 5712 7.923344 CCATATATCTTAACTCCTAAGCCATCG 59.077 40.741 0.00 0.00 37.51 3.84
3227 5713 6.919775 ATATCTTAACTCCTAAGCCATCGT 57.080 37.500 0.00 0.00 37.51 3.73
3228 5714 4.386867 TCTTAACTCCTAAGCCATCGTG 57.613 45.455 0.00 0.00 37.51 4.35
3229 5715 3.132289 TCTTAACTCCTAAGCCATCGTGG 59.868 47.826 0.25 0.25 41.55 4.94
3238 5724 4.557942 CCATCGTGGCTTGCAAAC 57.442 55.556 0.00 0.00 0.00 2.93
3239 5725 1.959085 CCATCGTGGCTTGCAAACT 59.041 52.632 0.00 0.00 0.00 2.66
3240 5726 0.387622 CCATCGTGGCTTGCAAACTG 60.388 55.000 0.00 0.00 0.00 3.16
3241 5727 1.005294 CATCGTGGCTTGCAAACTGC 61.005 55.000 0.00 0.00 45.29 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.135575 CAAAACCTTCTCGGCATCAGC 60.136 52.381 0.00 0.00 41.10 4.26
18 19 2.154462 ACAAAACCTTCTCGGCATCAG 58.846 47.619 0.00 0.00 35.61 2.90
19 20 2.151202 GACAAAACCTTCTCGGCATCA 58.849 47.619 0.00 0.00 35.61 3.07
20 21 1.128692 CGACAAAACCTTCTCGGCATC 59.871 52.381 0.00 0.00 35.61 3.91
21 22 1.156736 CGACAAAACCTTCTCGGCAT 58.843 50.000 0.00 0.00 35.61 4.40
23 24 1.866925 CCGACAAAACCTTCTCGGC 59.133 57.895 0.00 0.00 39.32 5.54
26 27 4.153655 GGTTCATACCGACAAAACCTTCTC 59.846 45.833 0.00 0.00 37.10 2.87
27 28 4.070009 GGTTCATACCGACAAAACCTTCT 58.930 43.478 0.00 0.00 37.10 2.85
28 29 3.189910 GGGTTCATACCGACAAAACCTTC 59.810 47.826 0.00 0.00 46.04 3.46
30 31 2.374170 AGGGTTCATACCGACAAAACCT 59.626 45.455 0.00 0.00 46.04 3.50
32 33 3.373130 GCTAGGGTTCATACCGACAAAAC 59.627 47.826 0.00 0.00 46.04 2.43
33 34 3.008157 TGCTAGGGTTCATACCGACAAAA 59.992 43.478 0.00 0.00 46.04 2.44
34 35 2.568062 TGCTAGGGTTCATACCGACAAA 59.432 45.455 0.00 0.00 46.04 2.83
35 36 2.181125 TGCTAGGGTTCATACCGACAA 58.819 47.619 0.00 0.00 46.04 3.18
36 37 1.855295 TGCTAGGGTTCATACCGACA 58.145 50.000 0.00 0.00 46.04 4.35
37 38 2.483188 CCTTGCTAGGGTTCATACCGAC 60.483 54.545 6.27 0.00 46.04 4.79
38 39 1.760613 CCTTGCTAGGGTTCATACCGA 59.239 52.381 6.27 0.00 46.04 4.69
39 40 2.240493 CCTTGCTAGGGTTCATACCG 57.760 55.000 6.27 0.00 46.04 4.02
54 55 0.515564 CGTTCGTTGGTTAGCCCTTG 59.484 55.000 0.00 0.00 0.00 3.61
55 56 1.232621 GCGTTCGTTGGTTAGCCCTT 61.233 55.000 0.00 0.00 0.00 3.95
56 57 1.670083 GCGTTCGTTGGTTAGCCCT 60.670 57.895 0.00 0.00 0.00 5.19
57 58 1.632948 GAGCGTTCGTTGGTTAGCCC 61.633 60.000 0.00 0.00 0.00 5.19
59 60 0.714439 GAGAGCGTTCGTTGGTTAGC 59.286 55.000 0.00 0.00 0.00 3.09
60 61 2.349297 AGAGAGCGTTCGTTGGTTAG 57.651 50.000 0.00 0.00 0.00 2.34
63 64 0.663568 CGAAGAGAGCGTTCGTTGGT 60.664 55.000 0.00 0.00 41.50 3.67
64 65 0.386858 TCGAAGAGAGCGTTCGTTGG 60.387 55.000 11.49 0.28 45.58 3.77
67 68 2.251893 GAAATCGAAGAGAGCGTTCGT 58.748 47.619 11.49 0.00 45.58 3.85
68 69 1.584308 GGAAATCGAAGAGAGCGTTCG 59.416 52.381 0.00 7.08 46.54 3.95
69 70 1.584308 CGGAAATCGAAGAGAGCGTTC 59.416 52.381 0.00 0.00 43.63 3.95
71 72 0.179134 CCGGAAATCGAAGAGAGCGT 60.179 55.000 0.00 0.00 43.63 5.07
72 73 0.872021 CCCGGAAATCGAAGAGAGCG 60.872 60.000 0.73 0.00 43.63 5.03
73 74 0.175989 ACCCGGAAATCGAAGAGAGC 59.824 55.000 0.73 0.00 43.63 4.09
74 75 1.534175 CGACCCGGAAATCGAAGAGAG 60.534 57.143 15.16 0.00 43.63 3.20
76 77 0.172803 ACGACCCGGAAATCGAAGAG 59.827 55.000 23.78 0.00 43.63 2.85
78 79 0.108992 TGACGACCCGGAAATCGAAG 60.109 55.000 23.78 0.00 40.86 3.79
81 82 0.179121 TGATGACGACCCGGAAATCG 60.179 55.000 17.70 17.70 43.97 3.34
82 83 2.135933 GATGATGACGACCCGGAAATC 58.864 52.381 0.73 0.00 0.00 2.17
83 84 1.484653 TGATGATGACGACCCGGAAAT 59.515 47.619 0.73 0.00 0.00 2.17
84 85 0.899019 TGATGATGACGACCCGGAAA 59.101 50.000 0.73 0.00 0.00 3.13
85 86 0.899019 TTGATGATGACGACCCGGAA 59.101 50.000 0.73 0.00 0.00 4.30
86 87 1.068588 GATTGATGATGACGACCCGGA 59.931 52.381 0.73 0.00 0.00 5.14
87 88 1.069204 AGATTGATGATGACGACCCGG 59.931 52.381 0.00 0.00 0.00 5.73
88 89 2.398498 GAGATTGATGATGACGACCCG 58.602 52.381 0.00 0.00 0.00 5.28
89 90 2.103094 TGGAGATTGATGATGACGACCC 59.897 50.000 0.00 0.00 0.00 4.46
90 91 3.126831 GTGGAGATTGATGATGACGACC 58.873 50.000 0.00 0.00 0.00 4.79
91 92 3.785486 TGTGGAGATTGATGATGACGAC 58.215 45.455 0.00 0.00 0.00 4.34
94 95 5.995897 TGATGATGTGGAGATTGATGATGAC 59.004 40.000 0.00 0.00 0.00 3.06
96 97 6.877611 TTGATGATGTGGAGATTGATGATG 57.122 37.500 0.00 0.00 0.00 3.07
97 98 8.478775 AATTTGATGATGTGGAGATTGATGAT 57.521 30.769 0.00 0.00 0.00 2.45
98 99 7.778382 AGAATTTGATGATGTGGAGATTGATGA 59.222 33.333 0.00 0.00 0.00 2.92
99 100 7.941919 AGAATTTGATGATGTGGAGATTGATG 58.058 34.615 0.00 0.00 0.00 3.07
101 102 7.067859 GGAAGAATTTGATGATGTGGAGATTGA 59.932 37.037 0.00 0.00 0.00 2.57
102 103 7.068348 AGGAAGAATTTGATGATGTGGAGATTG 59.932 37.037 0.00 0.00 0.00 2.67
103 104 7.124052 AGGAAGAATTTGATGATGTGGAGATT 58.876 34.615 0.00 0.00 0.00 2.40
105 106 6.070951 AGGAAGAATTTGATGATGTGGAGA 57.929 37.500 0.00 0.00 0.00 3.71
107 108 5.818887 TGAGGAAGAATTTGATGATGTGGA 58.181 37.500 0.00 0.00 0.00 4.02
109 110 7.768240 TCAATGAGGAAGAATTTGATGATGTG 58.232 34.615 0.00 0.00 0.00 3.21
110 111 7.832685 TCTCAATGAGGAAGAATTTGATGATGT 59.167 33.333 10.71 0.00 0.00 3.06
111 112 8.221965 TCTCAATGAGGAAGAATTTGATGATG 57.778 34.615 10.71 0.00 0.00 3.07
114 115 7.284716 TGGATCTCAATGAGGAAGAATTTGATG 59.715 37.037 10.71 0.00 0.00 3.07
115 116 7.351952 TGGATCTCAATGAGGAAGAATTTGAT 58.648 34.615 10.71 0.00 0.00 2.57
116 117 6.724351 TGGATCTCAATGAGGAAGAATTTGA 58.276 36.000 10.71 0.00 0.00 2.69
117 118 7.122353 AGTTGGATCTCAATGAGGAAGAATTTG 59.878 37.037 10.71 0.00 37.73 2.32
119 120 6.602406 CAGTTGGATCTCAATGAGGAAGAATT 59.398 38.462 10.71 0.00 37.73 2.17
120 121 6.120905 CAGTTGGATCTCAATGAGGAAGAAT 58.879 40.000 10.71 0.00 37.73 2.40
121 122 5.494724 CAGTTGGATCTCAATGAGGAAGAA 58.505 41.667 10.71 0.00 37.73 2.52
122 123 4.080695 CCAGTTGGATCTCAATGAGGAAGA 60.081 45.833 10.71 0.00 37.73 2.87
123 124 4.197750 CCAGTTGGATCTCAATGAGGAAG 58.802 47.826 10.71 0.00 37.73 3.46
125 126 3.184628 ACCAGTTGGATCTCAATGAGGA 58.815 45.455 10.71 0.00 37.73 3.71
126 127 3.539604 GACCAGTTGGATCTCAATGAGG 58.460 50.000 10.71 0.00 37.73 3.86
127 128 3.118992 TCGACCAGTTGGATCTCAATGAG 60.119 47.826 3.38 3.38 37.73 2.90
129 130 3.251479 TCGACCAGTTGGATCTCAATG 57.749 47.619 4.92 0.00 37.73 2.82
130 131 3.515502 TCTTCGACCAGTTGGATCTCAAT 59.484 43.478 4.92 0.00 37.73 2.57
132 133 2.525368 TCTTCGACCAGTTGGATCTCA 58.475 47.619 4.92 0.00 38.94 3.27
133 134 3.056465 ACTTCTTCGACCAGTTGGATCTC 60.056 47.826 4.92 0.00 38.94 2.75
135 136 3.320673 ACTTCTTCGACCAGTTGGATC 57.679 47.619 4.92 0.00 38.94 3.36
137 138 3.553828 AAACTTCTTCGACCAGTTGGA 57.446 42.857 4.92 0.00 38.94 3.53
138 139 3.877508 AGAAAACTTCTTCGACCAGTTGG 59.122 43.478 4.30 0.00 36.36 3.77
139 140 5.983720 TCTAGAAAACTTCTTCGACCAGTTG 59.016 40.000 4.30 0.00 41.14 3.16
140 141 6.158023 TCTAGAAAACTTCTTCGACCAGTT 57.842 37.500 0.00 0.00 41.14 3.16
142 143 5.513495 CGATCTAGAAAACTTCTTCGACCAG 59.487 44.000 0.00 0.00 38.94 4.00
143 144 5.399858 CGATCTAGAAAACTTCTTCGACCA 58.600 41.667 0.00 0.00 38.94 4.02
144 145 4.799428 CCGATCTAGAAAACTTCTTCGACC 59.201 45.833 9.15 0.00 38.94 4.79
145 146 4.799428 CCCGATCTAGAAAACTTCTTCGAC 59.201 45.833 9.15 0.00 38.94 4.20
147 148 4.995124 TCCCGATCTAGAAAACTTCTTCG 58.005 43.478 0.00 0.00 41.14 3.79
149 150 6.578023 CAGATCCCGATCTAGAAAACTTCTT 58.422 40.000 6.89 0.00 45.78 2.52
150 151 5.452636 GCAGATCCCGATCTAGAAAACTTCT 60.453 44.000 6.89 0.00 45.78 2.85
152 153 4.162320 TGCAGATCCCGATCTAGAAAACTT 59.838 41.667 6.89 0.00 45.78 2.66
153 154 3.706594 TGCAGATCCCGATCTAGAAAACT 59.293 43.478 6.89 0.00 45.78 2.66
155 156 3.706594 ACTGCAGATCCCGATCTAGAAAA 59.293 43.478 23.35 0.00 45.78 2.29
158 159 2.625314 CAACTGCAGATCCCGATCTAGA 59.375 50.000 23.35 0.00 45.78 2.43
160 161 1.069204 GCAACTGCAGATCCCGATCTA 59.931 52.381 23.35 0.00 45.78 1.98
163 164 4.547859 GCAACTGCAGATCCCGAT 57.452 55.556 23.35 0.00 41.59 4.18
185 186 4.787286 TGGTTATGGTGGCGGCGG 62.787 66.667 9.78 0.00 0.00 6.13
186 187 3.505184 GTGGTTATGGTGGCGGCG 61.505 66.667 0.51 0.51 0.00 6.46
187 188 3.138128 GGTGGTTATGGTGGCGGC 61.138 66.667 0.00 0.00 0.00 6.53
188 189 2.439519 GGGTGGTTATGGTGGCGG 60.440 66.667 0.00 0.00 0.00 6.13
190 191 0.106868 GTAGGGGTGGTTATGGTGGC 60.107 60.000 0.00 0.00 0.00 5.01
191 192 0.549469 GGTAGGGGTGGTTATGGTGG 59.451 60.000 0.00 0.00 0.00 4.61
192 193 1.064979 GTGGTAGGGGTGGTTATGGTG 60.065 57.143 0.00 0.00 0.00 4.17
194 195 0.549469 GGTGGTAGGGGTGGTTATGG 59.451 60.000 0.00 0.00 0.00 2.74
196 197 1.629181 GCGGTGGTAGGGGTGGTTAT 61.629 60.000 0.00 0.00 0.00 1.89
197 198 2.292559 GCGGTGGTAGGGGTGGTTA 61.293 63.158 0.00 0.00 0.00 2.85
198 199 3.643554 GCGGTGGTAGGGGTGGTT 61.644 66.667 0.00 0.00 0.00 3.67
203 204 4.235762 CGATGGCGGTGGTAGGGG 62.236 72.222 0.00 0.00 0.00 4.79
204 205 3.026431 AACGATGGCGGTGGTAGGG 62.026 63.158 0.00 0.00 43.17 3.53
216 217 1.683790 GAACTCGGCGACCAACGATG 61.684 60.000 4.99 0.00 45.77 3.84
217 218 1.445582 GAACTCGGCGACCAACGAT 60.446 57.895 4.99 0.00 45.77 3.73
218 219 2.049802 GAACTCGGCGACCAACGA 60.050 61.111 4.99 0.00 45.77 3.85
220 221 3.774702 GCGAACTCGGCGACCAAC 61.775 66.667 4.99 0.00 40.23 3.77
221 222 3.583276 ATGCGAACTCGGCGACCAA 62.583 57.895 4.99 0.00 40.23 3.67
224 225 3.255379 GGATGCGAACTCGGCGAC 61.255 66.667 4.99 0.00 40.23 5.19
225 226 4.847516 CGGATGCGAACTCGGCGA 62.848 66.667 10.14 10.14 40.23 5.54
227 228 2.956964 CTCGGATGCGAACTCGGC 60.957 66.667 11.42 0.00 40.23 5.54
230 231 1.066587 CCTCCTCGGATGCGAACTC 59.933 63.158 11.42 0.00 33.16 3.01
231 232 1.379977 TCCTCCTCGGATGCGAACT 60.380 57.895 11.42 0.00 36.69 3.01
232 233 1.066587 CTCCTCCTCGGATGCGAAC 59.933 63.158 11.42 0.00 42.12 3.95
233 234 2.127869 CCTCCTCCTCGGATGCGAA 61.128 63.158 11.42 0.00 42.12 4.70
234 235 2.519541 CCTCCTCCTCGGATGCGA 60.520 66.667 9.57 9.57 42.12 5.10
237 238 1.825281 GATGGCCTCCTCCTCGGATG 61.825 65.000 3.32 0.00 42.12 3.51
238 239 1.535202 GATGGCCTCCTCCTCGGAT 60.535 63.158 3.32 0.00 42.12 4.18
240 241 3.237741 GGATGGCCTCCTCCTCGG 61.238 72.222 3.32 0.00 41.29 4.63
242 243 3.237741 CGGGATGGCCTCCTCCTC 61.238 72.222 17.51 8.69 44.28 3.71
244 245 2.768344 TTCGGGATGGCCTCCTCC 60.768 66.667 17.51 14.00 44.28 4.30
246 247 3.470888 CGTTCGGGATGGCCTCCT 61.471 66.667 17.51 0.00 44.28 3.69
247 248 3.447025 CTCGTTCGGGATGGCCTCC 62.447 68.421 3.32 8.58 44.11 4.30
249 250 3.470888 CCTCGTTCGGGATGGCCT 61.471 66.667 3.32 0.00 0.00 5.19
252 253 3.833645 TCGCCTCGTTCGGGATGG 61.834 66.667 0.00 0.00 0.00 3.51
254 255 4.189188 CGTCGCCTCGTTCGGGAT 62.189 66.667 0.00 0.00 0.00 3.85
257 258 2.277120 CTACGTCGCCTCGTTCGG 60.277 66.667 6.17 0.00 43.80 4.30
258 259 1.862147 CACTACGTCGCCTCGTTCG 60.862 63.158 6.17 2.12 43.80 3.95
259 260 2.150837 GCACTACGTCGCCTCGTTC 61.151 63.158 6.17 0.00 43.80 3.95
260 261 2.126580 GCACTACGTCGCCTCGTT 60.127 61.111 6.17 0.00 43.80 3.85
263 264 2.202623 CCTGCACTACGTCGCCTC 60.203 66.667 0.00 0.00 0.00 4.70
264 265 3.760035 CCCTGCACTACGTCGCCT 61.760 66.667 0.00 0.00 0.00 5.52
266 267 2.202623 CTCCCTGCACTACGTCGC 60.203 66.667 0.00 0.00 0.00 5.19
269 270 0.320697 GGTTTCTCCCTGCACTACGT 59.679 55.000 0.00 0.00 0.00 3.57
299 300 4.918201 GATGGCTTCCTCCCGGCG 62.918 72.222 0.00 0.00 0.00 6.46
300 301 4.570874 GGATGGCTTCCTCCCGGC 62.571 72.222 11.96 0.00 41.78 6.13
303 304 2.375345 TTCGGGATGGCTTCCTCCC 61.375 63.158 17.89 11.19 46.59 4.30
306 307 1.961180 CTCGTTCGGGATGGCTTCCT 61.961 60.000 17.89 0.00 44.75 3.36
307 308 1.521681 CTCGTTCGGGATGGCTTCC 60.522 63.158 10.85 10.85 44.62 3.46
308 309 1.521681 CCTCGTTCGGGATGGCTTC 60.522 63.158 0.00 0.00 0.00 3.86
309 310 2.584608 CCTCGTTCGGGATGGCTT 59.415 61.111 0.00 0.00 0.00 4.35
310 311 4.162690 GCCTCGTTCGGGATGGCT 62.163 66.667 0.00 0.00 40.36 4.75
312 313 3.833645 TCGCCTCGTTCGGGATGG 61.834 66.667 0.00 0.00 0.00 3.51
314 315 4.189188 CGTCGCCTCGTTCGGGAT 62.189 66.667 0.00 0.00 0.00 3.85
317 318 2.277120 CTACGTCGCCTCGTTCGG 60.277 66.667 6.17 0.00 43.80 4.30
318 319 1.862147 CACTACGTCGCCTCGTTCG 60.862 63.158 6.17 2.12 43.80 3.95
320 321 2.126580 GCACTACGTCGCCTCGTT 60.127 61.111 6.17 0.00 43.80 3.85
321 322 3.324099 CTGCACTACGTCGCCTCGT 62.324 63.158 0.00 6.14 45.97 4.18
322 323 2.577112 CTGCACTACGTCGCCTCG 60.577 66.667 0.00 0.00 0.00 4.63
323 324 2.202623 CCTGCACTACGTCGCCTC 60.203 66.667 0.00 0.00 0.00 4.70
324 325 3.760035 CCCTGCACTACGTCGCCT 61.760 66.667 0.00 0.00 0.00 5.52
325 326 3.701604 CTCCCTGCACTACGTCGCC 62.702 68.421 0.00 0.00 0.00 5.54
326 327 2.202623 CTCCCTGCACTACGTCGC 60.203 66.667 0.00 0.00 0.00 5.19
327 328 0.242825 TTTCTCCCTGCACTACGTCG 59.757 55.000 0.00 0.00 0.00 5.12
328 329 1.672145 GGTTTCTCCCTGCACTACGTC 60.672 57.143 0.00 0.00 0.00 4.34
329 330 0.320697 GGTTTCTCCCTGCACTACGT 59.679 55.000 0.00 0.00 0.00 3.57
330 331 3.139029 GGTTTCTCCCTGCACTACG 57.861 57.895 0.00 0.00 0.00 3.51
351 352 4.222847 GATCCCGGCGACCCTCAC 62.223 72.222 9.30 0.00 0.00 3.51
362 363 1.133790 AGAGTTTTACGTCCGATCCCG 59.866 52.381 0.00 0.00 0.00 5.14
364 365 3.436496 CTCAGAGTTTTACGTCCGATCC 58.564 50.000 0.00 0.00 0.00 3.36
365 366 3.436496 CCTCAGAGTTTTACGTCCGATC 58.564 50.000 0.00 0.00 0.00 3.69
366 367 2.165845 CCCTCAGAGTTTTACGTCCGAT 59.834 50.000 0.00 0.00 0.00 4.18
367 368 1.542915 CCCTCAGAGTTTTACGTCCGA 59.457 52.381 0.00 0.00 0.00 4.55
368 369 1.403780 CCCCTCAGAGTTTTACGTCCG 60.404 57.143 0.00 0.00 0.00 4.79
370 371 2.670509 CGTCCCCTCAGAGTTTTACGTC 60.671 54.545 0.00 0.00 0.00 4.34
372 373 1.542915 TCGTCCCCTCAGAGTTTTACG 59.457 52.381 0.00 1.57 0.00 3.18
373 374 2.561858 ACTCGTCCCCTCAGAGTTTTAC 59.438 50.000 0.00 0.00 41.93 2.01
374 375 2.824341 GACTCGTCCCCTCAGAGTTTTA 59.176 50.000 0.00 0.00 44.30 1.52
375 376 1.619332 GACTCGTCCCCTCAGAGTTTT 59.381 52.381 0.00 0.00 44.30 2.43
376 377 1.258676 GACTCGTCCCCTCAGAGTTT 58.741 55.000 0.00 0.00 44.30 2.66
377 378 0.961358 CGACTCGTCCCCTCAGAGTT 60.961 60.000 0.00 0.00 44.30 3.01
378 379 1.377463 CGACTCGTCCCCTCAGAGT 60.377 63.158 0.00 0.00 46.61 3.24
380 381 2.750637 GCGACTCGTCCCCTCAGA 60.751 66.667 0.00 0.00 0.00 3.27
381 382 3.827898 GGCGACTCGTCCCCTCAG 61.828 72.222 0.00 0.00 0.00 3.35
382 383 4.361971 AGGCGACTCGTCCCCTCA 62.362 66.667 0.00 0.00 32.70 3.86
394 395 0.608640 GTTTCCTTCCTCTGAGGCGA 59.391 55.000 19.08 10.81 34.61 5.54
395 396 0.391793 GGTTTCCTTCCTCTGAGGCG 60.392 60.000 19.08 11.69 34.61 5.52
396 397 0.034960 GGGTTTCCTTCCTCTGAGGC 60.035 60.000 19.08 2.85 34.61 4.70
397 398 1.662686 AGGGTTTCCTTCCTCTGAGG 58.337 55.000 17.84 17.84 41.56 3.86
398 399 3.445987 ACTAGGGTTTCCTTCCTCTGAG 58.554 50.000 0.00 0.00 41.56 3.35
399 400 3.442076 GACTAGGGTTTCCTTCCTCTGA 58.558 50.000 0.00 0.00 41.56 3.27
400 401 2.166664 CGACTAGGGTTTCCTTCCTCTG 59.833 54.545 0.00 0.00 41.56 3.35
401 402 2.458620 CGACTAGGGTTTCCTTCCTCT 58.541 52.381 0.00 0.00 41.56 3.69
402 403 1.134759 GCGACTAGGGTTTCCTTCCTC 60.135 57.143 0.00 0.00 41.56 3.71
404 405 0.459759 CGCGACTAGGGTTTCCTTCC 60.460 60.000 0.00 0.00 41.56 3.46
405 406 0.529378 TCGCGACTAGGGTTTCCTTC 59.471 55.000 3.71 0.00 41.56 3.46
406 407 0.531200 CTCGCGACTAGGGTTTCCTT 59.469 55.000 3.71 0.00 41.56 3.36
409 410 0.525882 GCTCTCGCGACTAGGGTTTC 60.526 60.000 3.71 0.00 0.00 2.78
410 411 0.966370 AGCTCTCGCGACTAGGGTTT 60.966 55.000 3.71 0.00 42.32 3.27
411 412 0.107312 TAGCTCTCGCGACTAGGGTT 60.107 55.000 3.71 0.00 42.32 4.11
412 413 0.533308 CTAGCTCTCGCGACTAGGGT 60.533 60.000 19.34 11.69 42.32 4.34
413 414 1.231958 CCTAGCTCTCGCGACTAGGG 61.232 65.000 30.07 14.69 46.24 3.53
417 418 2.517402 CCCCTAGCTCTCGCGACT 60.517 66.667 3.71 3.33 42.32 4.18
418 419 2.065906 CTTCCCCTAGCTCTCGCGAC 62.066 65.000 3.71 0.00 42.32 5.19
419 420 1.824329 CTTCCCCTAGCTCTCGCGA 60.824 63.158 9.26 9.26 42.32 5.87
420 421 2.725008 CTTCCCCTAGCTCTCGCG 59.275 66.667 0.00 0.00 42.32 5.87
421 422 2.362329 CTGCTTCCCCTAGCTCTCGC 62.362 65.000 0.00 0.00 41.76 5.03
422 423 1.739049 CTGCTTCCCCTAGCTCTCG 59.261 63.158 0.00 0.00 41.76 4.04
424 425 2.430610 CGCTGCTTCCCCTAGCTCT 61.431 63.158 0.00 0.00 41.76 4.09
425 426 1.392710 TACGCTGCTTCCCCTAGCTC 61.393 60.000 0.00 0.00 41.76 4.09
426 427 1.381327 TACGCTGCTTCCCCTAGCT 60.381 57.895 0.00 0.00 41.76 3.32
427 428 1.227292 GTACGCTGCTTCCCCTAGC 60.227 63.158 0.00 0.00 41.59 3.42
428 429 0.386113 GAGTACGCTGCTTCCCCTAG 59.614 60.000 0.00 0.00 0.00 3.02
429 430 0.033405 AGAGTACGCTGCTTCCCCTA 60.033 55.000 0.00 0.00 0.00 3.53
430 431 1.305381 AGAGTACGCTGCTTCCCCT 60.305 57.895 0.00 0.00 0.00 4.79
432 433 0.179124 CTGAGAGTACGCTGCTTCCC 60.179 60.000 2.99 0.00 0.00 3.97
440 441 2.030185 TCAACAAGGACTGAGAGTACGC 60.030 50.000 0.00 0.00 33.15 4.42
473 1993 0.384725 CGCACTTTGTTGCTTCCTCG 60.385 55.000 0.00 0.00 40.62 4.63
489 2009 3.457263 TGGCCTCGACTATGCGCA 61.457 61.111 14.96 14.96 0.00 6.09
643 2169 1.030488 GGGAGTGATGAGGTCGTCGA 61.030 60.000 0.00 0.00 34.69 4.20
644 2170 1.433879 GGGAGTGATGAGGTCGTCG 59.566 63.158 0.00 0.00 34.69 5.12
645 2171 1.817209 GGGGAGTGATGAGGTCGTC 59.183 63.158 0.00 0.00 0.00 4.20
663 2189 1.444836 TTAATTGACTCAACCCGGCG 58.555 50.000 0.00 0.00 0.00 6.46
794 2400 0.464036 TTCCACCACTAGCATAGCGG 59.536 55.000 0.00 0.00 46.28 5.52
795 2401 2.309528 TTTCCACCACTAGCATAGCG 57.690 50.000 0.00 0.00 44.39 4.26
825 2433 8.290325 CACCACCAGAGTTTCTTTATTTCTTAC 58.710 37.037 0.00 0.00 0.00 2.34
926 2576 1.749063 CTATACCAGGCACAGTCGTCA 59.251 52.381 0.00 0.00 0.00 4.35
964 2614 1.600013 GGTGTGTATGTGTTGCAACGA 59.400 47.619 23.79 13.78 0.00 3.85
977 2629 3.427098 CGACGATCTTAGCTTGGTGTGTA 60.427 47.826 0.00 0.00 0.00 2.90
1014 2682 2.575461 GCAAGCATGGGAGCAACC 59.425 61.111 0.00 0.00 36.85 3.77
1036 2704 4.379243 AAGGACGACCAGCGCCTG 62.379 66.667 2.29 1.18 42.79 4.85
1037 2705 4.379243 CAAGGACGACCAGCGCCT 62.379 66.667 2.29 0.00 44.54 5.52
1038 2706 4.681978 ACAAGGACGACCAGCGCC 62.682 66.667 2.29 0.00 46.04 6.53
1169 3052 2.746277 CCCGGTAAGCACTGCACC 60.746 66.667 0.00 2.07 0.00 5.01
1180 3063 1.456145 TCGGATTAGCTGCCCGGTA 60.456 57.895 18.67 3.01 43.16 4.02
1287 3242 1.939974 TAATGTGCGGCAAGAGCTAG 58.060 50.000 3.23 0.00 41.70 3.42
1288 3243 2.394930 TTAATGTGCGGCAAGAGCTA 57.605 45.000 3.23 0.00 41.70 3.32
1289 3244 1.672881 GATTAATGTGCGGCAAGAGCT 59.327 47.619 3.23 0.00 41.70 4.09
1290 3245 1.672881 AGATTAATGTGCGGCAAGAGC 59.327 47.619 3.23 0.00 41.10 4.09
1375 3362 5.142061 TGGATTTGTAGAGCTTAACGACA 57.858 39.130 0.00 0.00 0.00 4.35
1787 3774 2.435059 GCTCGCCAGGAAGTCCAC 60.435 66.667 0.00 0.00 38.89 4.02
1949 3939 1.679641 TGGAGTCGACCATGGCGTA 60.680 57.895 22.22 10.78 34.77 4.42
2047 4037 2.745884 TGCATCGTCGCCCCAAAG 60.746 61.111 0.00 0.00 0.00 2.77
2050 4040 3.700970 TTCTGCATCGTCGCCCCA 61.701 61.111 0.00 0.00 0.00 4.96
2061 4051 3.948961 TATGCCTGCGCGTTCTGCA 62.949 57.895 8.43 12.50 46.97 4.41
2077 4067 5.579047 TGTTTGATCAATCCCTGGTTGTAT 58.421 37.500 9.40 0.00 0.00 2.29
2261 4257 2.483188 GGACACAGAATATCCACCGGTC 60.483 54.545 2.59 0.00 32.35 4.79
2263 4259 1.538204 CGGACACAGAATATCCACCGG 60.538 57.143 0.00 0.00 36.27 5.28
2266 4262 5.177696 GCTTATTCGGACACAGAATATCCAC 59.822 44.000 0.00 0.00 39.45 4.02
2275 4271 0.647410 CGCAGCTTATTCGGACACAG 59.353 55.000 0.00 0.00 0.00 3.66
2389 4407 9.983024 TGTAAAAGGTGGAATTCAATCCTATTA 57.017 29.630 7.93 0.00 40.35 0.98
2429 4449 1.418264 GGCTGGACCTAAGATCTTCCC 59.582 57.143 12.24 9.79 34.51 3.97
2430 4450 1.069358 CGGCTGGACCTAAGATCTTCC 59.931 57.143 12.24 7.77 35.61 3.46
2431 4451 1.069358 CCGGCTGGACCTAAGATCTTC 59.931 57.143 12.24 0.00 37.49 2.87
2432 4452 1.123928 CCGGCTGGACCTAAGATCTT 58.876 55.000 13.56 13.56 37.49 2.40
2433 4453 1.403687 GCCGGCTGGACCTAAGATCT 61.404 60.000 22.15 0.00 37.49 2.75
2434 4454 1.069935 GCCGGCTGGACCTAAGATC 59.930 63.158 22.15 0.00 37.49 2.75
2435 4455 2.797278 CGCCGGCTGGACCTAAGAT 61.797 63.158 26.68 0.00 37.49 2.40
2436 4456 3.458163 CGCCGGCTGGACCTAAGA 61.458 66.667 26.68 0.00 37.49 2.10
2444 4464 3.431725 GAGTTTTCCGCCGGCTGG 61.432 66.667 26.68 25.95 38.77 4.85
2445 4465 1.791103 TTTGAGTTTTCCGCCGGCTG 61.791 55.000 26.68 19.63 0.00 4.85
2474 4494 3.059868 ACACGTGTTGTTCATAGAAAGCG 60.060 43.478 17.22 0.00 33.09 4.68
2477 4497 3.810941 GGGACACGTGTTGTTCATAGAAA 59.189 43.478 24.26 0.00 39.17 2.52
2479 4499 2.365941 TGGGACACGTGTTGTTCATAGA 59.634 45.455 24.26 0.00 39.17 1.98
2482 4502 2.045561 TTGGGACACGTGTTGTTCAT 57.954 45.000 24.26 0.00 39.17 2.57
2496 4516 7.174599 CCATTTGCAGAAATATTTTGTTTGGGA 59.825 33.333 1.43 0.00 30.20 4.37
2499 4519 6.802834 GGCCATTTGCAGAAATATTTTGTTTG 59.197 34.615 0.00 1.20 43.89 2.93
2514 4649 0.534652 GCAACAAAGGGCCATTTGCA 60.535 50.000 35.93 0.00 42.68 4.08
2519 4654 2.725221 TTTTTGCAACAAAGGGCCAT 57.275 40.000 6.18 0.00 0.00 4.40
2550 4685 0.965439 CCTTTTTGCAACGGGGATCA 59.035 50.000 0.00 0.00 0.00 2.92
2574 4709 5.580297 TGGTCTTGTTGCAATTTTGTTCTTC 59.420 36.000 0.59 0.00 0.00 2.87
2580 4715 8.586570 TTAATAGTGGTCTTGTTGCAATTTTG 57.413 30.769 0.59 0.00 0.00 2.44
2608 4743 5.673514 ACAAAGGTCATGTTGCAGATTTTT 58.326 33.333 0.00 0.00 0.00 1.94
2609 4744 5.280654 ACAAAGGTCATGTTGCAGATTTT 57.719 34.783 0.00 0.00 0.00 1.82
2610 4745 4.942761 ACAAAGGTCATGTTGCAGATTT 57.057 36.364 0.00 0.00 0.00 2.17
2611 4746 4.942761 AACAAAGGTCATGTTGCAGATT 57.057 36.364 0.00 0.00 39.43 2.40
2612 4747 4.826733 TGTAACAAAGGTCATGTTGCAGAT 59.173 37.500 6.16 0.00 44.67 2.90
2614 4749 4.566545 TGTAACAAAGGTCATGTTGCAG 57.433 40.909 6.16 0.00 44.67 4.41
2616 4751 5.105752 TGTTTGTAACAAAGGTCATGTTGC 58.894 37.500 2.37 1.82 40.95 4.17
2633 4768 4.681744 AGATCGTGTTGCAATTTGTTTGT 58.318 34.783 0.59 0.00 37.65 2.83
2638 4773 5.425398 CAACAAAGATCGTGTTGCAATTTG 58.575 37.500 23.61 14.68 46.63 2.32
2648 4787 4.026640 CACCTTTTTGCAACAAAGATCGTG 60.027 41.667 23.82 20.06 33.69 4.35
2656 4795 3.761218 TCTCAGTCACCTTTTTGCAACAA 59.239 39.130 0.00 0.00 0.00 2.83
2725 4864 1.151450 CCCTCTGCAACAAGGGTGT 59.849 57.895 16.86 0.00 46.21 4.16
2739 4878 2.360475 GTGTTGCAGGAGGCCCTC 60.360 66.667 0.73 0.73 42.02 4.30
2747 4886 2.095059 GCAATAAGAGTGGTGTTGCAGG 60.095 50.000 3.76 0.00 43.33 4.85
2748 4887 2.553602 TGCAATAAGAGTGGTGTTGCAG 59.446 45.455 6.95 0.00 46.98 4.41
2758 4897 5.072741 ACAACCACTCATTGCAATAAGAGT 58.927 37.500 20.94 20.94 41.70 3.24
2764 4903 3.550639 CGTGAACAACCACTCATTGCAAT 60.551 43.478 5.99 5.99 35.02 3.56
2769 4908 1.946768 CCACGTGAACAACCACTCATT 59.053 47.619 19.30 0.00 35.02 2.57
2771 4910 0.537653 TCCACGTGAACAACCACTCA 59.462 50.000 19.30 0.00 35.02 3.41
2773 4912 2.631062 TCTATCCACGTGAACAACCACT 59.369 45.455 19.30 0.00 35.02 4.00
2785 4924 1.886542 TGGTCATCCGATCTATCCACG 59.113 52.381 0.00 0.00 36.30 4.94
2798 4937 4.074970 GGATGGACATGGTAATGGTCATC 58.925 47.826 0.00 11.63 41.51 2.92
2827 4966 0.909610 AAAGATCCACCGCCTCTCCA 60.910 55.000 0.00 0.00 0.00 3.86
2828 4967 0.253327 AAAAGATCCACCGCCTCTCC 59.747 55.000 0.00 0.00 0.00 3.71
2829 4968 1.208293 AGAAAAGATCCACCGCCTCTC 59.792 52.381 0.00 0.00 0.00 3.20
2841 4980 5.070685 GGCCCGTGGATAATAAGAAAAGAT 58.929 41.667 0.00 0.00 0.00 2.40
2843 4982 3.250040 CGGCCCGTGGATAATAAGAAAAG 59.750 47.826 0.00 0.00 0.00 2.27
2862 5001 2.886124 GAAGTGCTAGGCGTCGGC 60.886 66.667 11.43 11.43 38.90 5.54
2878 5017 8.286800 CACACAAAATTGAGAGTAAAATACGGA 58.713 33.333 0.00 0.00 0.00 4.69
2881 5020 9.944663 TGACACACAAAATTGAGAGTAAAATAC 57.055 29.630 0.00 0.00 0.00 1.89
2884 5023 9.868277 AATTGACACACAAAATTGAGAGTAAAA 57.132 25.926 0.00 0.00 42.03 1.52
2885 5024 9.868277 AAATTGACACACAAAATTGAGAGTAAA 57.132 25.926 0.00 0.00 42.03 2.01
2886 5025 9.868277 AAAATTGACACACAAAATTGAGAGTAA 57.132 25.926 0.00 0.00 42.03 2.24
2887 5026 9.299963 CAAAATTGACACACAAAATTGAGAGTA 57.700 29.630 0.00 0.00 42.03 2.59
2888 5027 7.201548 GCAAAATTGACACACAAAATTGAGAGT 60.202 33.333 0.00 0.00 42.03 3.24
2889 5028 7.010738 AGCAAAATTGACACACAAAATTGAGAG 59.989 33.333 0.00 0.00 42.03 3.20
2890 5029 6.817641 AGCAAAATTGACACACAAAATTGAGA 59.182 30.769 0.00 0.00 42.03 3.27
2891 5030 7.007313 AGCAAAATTGACACACAAAATTGAG 57.993 32.000 0.00 0.00 42.03 3.02
2926 5065 3.156714 CCTGTGTAGGCCACCACA 58.843 61.111 21.82 21.82 43.85 4.17
2937 5076 1.352352 AGCTGAGTTATTGGCCTGTGT 59.648 47.619 3.32 0.00 0.00 3.72
2940 5079 0.737219 GCAGCTGAGTTATTGGCCTG 59.263 55.000 20.43 0.00 0.00 4.85
2953 5436 1.481819 GCACGTTGTTTTGGCAGCTG 61.482 55.000 10.11 10.11 0.00 4.24
2992 5475 7.437862 GCACCATAAAAAGAATTCAACAACTGA 59.562 33.333 8.44 0.00 0.00 3.41
2993 5476 7.439056 AGCACCATAAAAAGAATTCAACAACTG 59.561 33.333 8.44 0.00 0.00 3.16
2994 5477 7.500141 AGCACCATAAAAAGAATTCAACAACT 58.500 30.769 8.44 0.00 0.00 3.16
3164 5650 9.775854 TTATTCATTCAAACATGGTGAACATTT 57.224 25.926 14.26 5.56 37.84 2.32
3196 5682 9.872721 GGCTTAGGAGTTAAGATATATGGTAAC 57.127 37.037 0.00 0.00 41.10 2.50
3197 5683 9.610104 TGGCTTAGGAGTTAAGATATATGGTAA 57.390 33.333 0.00 0.00 41.10 2.85
3198 5684 9.784376 ATGGCTTAGGAGTTAAGATATATGGTA 57.216 33.333 0.00 0.00 41.10 3.25
3199 5685 8.686739 ATGGCTTAGGAGTTAAGATATATGGT 57.313 34.615 0.00 0.00 41.10 3.55
3200 5686 7.923344 CGATGGCTTAGGAGTTAAGATATATGG 59.077 40.741 0.00 0.00 41.10 2.74
3201 5687 8.470805 ACGATGGCTTAGGAGTTAAGATATATG 58.529 37.037 0.00 0.00 41.10 1.78
3202 5688 8.470805 CACGATGGCTTAGGAGTTAAGATATAT 58.529 37.037 0.00 0.00 41.10 0.86
3203 5689 7.093902 CCACGATGGCTTAGGAGTTAAGATATA 60.094 40.741 0.00 0.00 41.10 0.86
3204 5690 6.295349 CCACGATGGCTTAGGAGTTAAGATAT 60.295 42.308 0.00 0.00 41.10 1.63
3205 5691 5.010719 CCACGATGGCTTAGGAGTTAAGATA 59.989 44.000 0.00 0.00 41.10 1.98
3206 5692 4.202264 CCACGATGGCTTAGGAGTTAAGAT 60.202 45.833 0.00 0.00 41.10 2.40
3207 5693 3.132289 CCACGATGGCTTAGGAGTTAAGA 59.868 47.826 0.00 0.00 41.10 2.10
3208 5694 3.458189 CCACGATGGCTTAGGAGTTAAG 58.542 50.000 0.00 0.00 41.46 1.85
3209 5695 3.536956 CCACGATGGCTTAGGAGTTAA 57.463 47.619 0.00 0.00 0.00 2.01
3221 5707 0.387622 CAGTTTGCAAGCCACGATGG 60.388 55.000 9.92 0.00 41.55 3.51
3222 5708 1.005294 GCAGTTTGCAAGCCACGATG 61.005 55.000 9.92 2.51 44.26 3.84
3223 5709 1.286880 GCAGTTTGCAAGCCACGAT 59.713 52.632 9.92 0.00 44.26 3.73
3224 5710 2.721231 GCAGTTTGCAAGCCACGA 59.279 55.556 9.92 0.00 44.26 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.