Multiple sequence alignment - TraesCS3A01G479900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G479900 chr3A 100.000 3051 0 0 1 3051 711201911 711204961 0.000000e+00 5635.0
1 TraesCS3A01G479900 chr3A 84.767 1418 160 37 777 2168 711217570 711218957 0.000000e+00 1371.0
2 TraesCS3A01G479900 chr3A 91.667 540 41 1 1517 2052 712571785 712571246 0.000000e+00 745.0
3 TraesCS3A01G479900 chr3A 83.893 596 62 19 1154 1722 712572380 712571792 3.460000e-149 538.0
4 TraesCS3A01G479900 chr3A 80.564 319 34 15 2284 2600 711219994 711220286 1.420000e-53 220.0
5 TraesCS3A01G479900 chr3A 79.720 286 34 12 359 644 711216989 711217250 5.190000e-43 185.0
6 TraesCS3A01G479900 chr3A 92.647 68 5 0 2162 2229 633802360 633802293 6.960000e-17 99.0
7 TraesCS3A01G479900 chr3A 85.057 87 11 2 2175 2259 501223948 501224034 1.510000e-13 87.9
8 TraesCS3A01G479900 chr3D 83.540 1531 135 62 690 2151 575725500 575726982 0.000000e+00 1323.0
9 TraesCS3A01G479900 chr3D 83.877 1073 113 30 1001 2052 577255869 577254836 0.000000e+00 968.0
10 TraesCS3A01G479900 chr3D 95.493 355 16 0 1488 1842 577264215 577263861 4.410000e-158 568.0
11 TraesCS3A01G479900 chr3D 84.866 522 61 12 2539 3051 575730401 575730913 7.550000e-141 510.0
12 TraesCS3A01G479900 chr3D 78.571 322 40 15 197 502 575725055 575725363 5.190000e-43 185.0
13 TraesCS3A01G479900 chr3D 75.118 422 51 27 690 1081 577264816 577264419 6.820000e-32 148.0
14 TraesCS3A01G479900 chr3D 82.203 118 11 4 2064 2171 577254316 577254199 3.240000e-15 93.5
15 TraesCS3A01G479900 chr3B 88.983 1062 95 17 1099 2149 766631312 766632362 0.000000e+00 1293.0
16 TraesCS3A01G479900 chr3B 87.946 1037 99 13 1158 2168 769056273 769055237 0.000000e+00 1199.0
17 TraesCS3A01G479900 chr3B 80.581 1205 158 39 936 2095 768904962 768903789 0.000000e+00 859.0
18 TraesCS3A01G479900 chr3B 87.375 301 33 4 2301 2600 766632492 766632788 1.050000e-89 340.0
19 TraesCS3A01G479900 chr3B 75.735 544 61 36 364 850 766630594 766631123 1.110000e-49 207.0
20 TraesCS3A01G479900 chr3B 78.125 192 30 5 896 1081 766631135 766631320 8.940000e-21 111.0
21 TraesCS3A01G479900 chr3B 75.084 297 45 18 896 1189 769056470 769056200 8.940000e-21 111.0
22 TraesCS3A01G479900 chr3B 78.571 168 12 5 701 849 768988471 768988309 4.190000e-14 89.8
23 TraesCS3A01G479900 chr6B 83.317 1019 112 31 1196 2173 438386790 438385789 0.000000e+00 887.0
24 TraesCS3A01G479900 chr6A 83.283 999 102 35 1214 2173 399722136 399723108 0.000000e+00 859.0
25 TraesCS3A01G479900 chr6D 84.897 874 82 25 1260 2093 276456691 276455828 0.000000e+00 837.0
26 TraesCS3A01G479900 chr6D 77.087 515 99 15 1549 2050 15640539 15641047 2.320000e-71 279.0
27 TraesCS3A01G479900 chr5B 82.609 345 46 8 1716 2047 96764631 96764288 2.980000e-75 292.0
28 TraesCS3A01G479900 chr5B 100.000 28 0 0 1 28 653716509 653716482 5.000000e-03 52.8
29 TraesCS3A01G479900 chr7B 92.647 68 3 2 2165 2231 741490869 741490935 2.500000e-16 97.1
30 TraesCS3A01G479900 chr4B 96.552 58 1 1 2175 2231 561383082 561383139 9.010000e-16 95.3
31 TraesCS3A01G479900 chr4B 89.855 69 4 3 2162 2229 106858449 106858515 5.420000e-13 86.1
32 TraesCS3A01G479900 chr2A 90.278 72 4 3 2175 2244 43461731 43461661 1.160000e-14 91.6
33 TraesCS3A01G479900 chrUn 86.905 84 5 6 2171 2250 88207979 88207898 4.190000e-14 89.8
34 TraesCS3A01G479900 chr2B 89.706 68 5 2 2163 2229 305317092 305317158 5.420000e-13 86.1
35 TraesCS3A01G479900 chr1B 84.091 88 11 2 2174 2260 15235403 15235318 7.010000e-12 82.4
36 TraesCS3A01G479900 chr5D 100.000 28 0 0 1 28 519367396 519367369 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G479900 chr3A 711201911 711204961 3050 False 5635.000000 5635 100.000000 1 3051 1 chr3A.!!$F2 3050
1 TraesCS3A01G479900 chr3A 712571246 712572380 1134 True 641.500000 745 87.780000 1154 2052 2 chr3A.!!$R2 898
2 TraesCS3A01G479900 chr3A 711216989 711220286 3297 False 592.000000 1371 81.683667 359 2600 3 chr3A.!!$F3 2241
3 TraesCS3A01G479900 chr3D 575725055 575730913 5858 False 672.666667 1323 82.325667 197 3051 3 chr3D.!!$F1 2854
4 TraesCS3A01G479900 chr3D 577254199 577255869 1670 True 530.750000 968 83.040000 1001 2171 2 chr3D.!!$R1 1170
5 TraesCS3A01G479900 chr3D 577263861 577264816 955 True 358.000000 568 85.305500 690 1842 2 chr3D.!!$R2 1152
6 TraesCS3A01G479900 chr3B 768903789 768904962 1173 True 859.000000 859 80.581000 936 2095 1 chr3B.!!$R1 1159
7 TraesCS3A01G479900 chr3B 769055237 769056470 1233 True 655.000000 1199 81.515000 896 2168 2 chr3B.!!$R3 1272
8 TraesCS3A01G479900 chr3B 766630594 766632788 2194 False 487.750000 1293 82.554500 364 2600 4 chr3B.!!$F1 2236
9 TraesCS3A01G479900 chr6B 438385789 438386790 1001 True 887.000000 887 83.317000 1196 2173 1 chr6B.!!$R1 977
10 TraesCS3A01G479900 chr6A 399722136 399723108 972 False 859.000000 859 83.283000 1214 2173 1 chr6A.!!$F1 959
11 TraesCS3A01G479900 chr6D 276455828 276456691 863 True 837.000000 837 84.897000 1260 2093 1 chr6D.!!$R1 833
12 TraesCS3A01G479900 chr6D 15640539 15641047 508 False 279.000000 279 77.087000 1549 2050 1 chr6D.!!$F1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
336 346 0.107945 GCCGGAGAGAAGTGCAGATT 60.108 55.0 5.05 0.0 0.00 2.40 F
1006 1259 0.107081 AAGCAAGCAAGCAATGGCAA 59.893 45.0 0.00 0.0 44.61 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 2535 0.255890 CCCACGATTCCCTCATTGGT 59.744 55.0 0.0 0.0 0.00 3.67 R
2921 8318 0.036306 AAGTGTTAGGCCTTCCACCG 59.964 55.0 23.6 0.0 33.74 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.617875 GGGTCGGTGTTGGAGATG 57.382 61.111 0.00 0.00 0.00 2.90
18 19 1.745489 GGGTCGGTGTTGGAGATGC 60.745 63.158 0.00 0.00 0.00 3.91
19 20 1.745489 GGTCGGTGTTGGAGATGCC 60.745 63.158 0.00 0.00 37.10 4.40
20 21 1.745489 GTCGGTGTTGGAGATGCCC 60.745 63.158 0.00 0.00 34.97 5.36
21 22 1.918293 TCGGTGTTGGAGATGCCCT 60.918 57.895 0.00 0.00 34.97 5.19
22 23 1.002134 CGGTGTTGGAGATGCCCTT 60.002 57.895 0.00 0.00 34.97 3.95
23 24 0.251916 CGGTGTTGGAGATGCCCTTA 59.748 55.000 0.00 0.00 34.97 2.69
24 25 1.743772 CGGTGTTGGAGATGCCCTTAG 60.744 57.143 0.00 0.00 34.97 2.18
25 26 1.282157 GGTGTTGGAGATGCCCTTAGT 59.718 52.381 0.00 0.00 34.97 2.24
26 27 2.504175 GGTGTTGGAGATGCCCTTAGTA 59.496 50.000 0.00 0.00 34.97 1.82
27 28 3.532542 GTGTTGGAGATGCCCTTAGTAC 58.467 50.000 0.00 0.00 34.97 2.73
28 29 2.167693 TGTTGGAGATGCCCTTAGTACG 59.832 50.000 0.00 0.00 34.97 3.67
29 30 2.154567 TGGAGATGCCCTTAGTACGT 57.845 50.000 0.00 0.00 34.97 3.57
30 31 3.301794 TGGAGATGCCCTTAGTACGTA 57.698 47.619 0.00 0.00 34.97 3.57
31 32 3.220110 TGGAGATGCCCTTAGTACGTAG 58.780 50.000 0.00 0.00 34.97 3.51
32 33 2.557490 GGAGATGCCCTTAGTACGTAGG 59.443 54.545 0.00 8.81 0.00 3.18
33 34 1.962100 AGATGCCCTTAGTACGTAGGC 59.038 52.381 14.19 14.19 44.13 3.93
36 37 2.904697 GCCCTTAGTACGTAGGCAAT 57.095 50.000 15.72 0.00 43.32 3.56
37 38 3.189618 GCCCTTAGTACGTAGGCAATT 57.810 47.619 15.72 0.00 43.32 2.32
38 39 3.538591 GCCCTTAGTACGTAGGCAATTT 58.461 45.455 15.72 0.00 43.32 1.82
39 40 3.311596 GCCCTTAGTACGTAGGCAATTTG 59.688 47.826 15.72 0.00 43.32 2.32
40 41 4.510571 CCCTTAGTACGTAGGCAATTTGT 58.489 43.478 9.98 0.00 0.00 2.83
41 42 4.939439 CCCTTAGTACGTAGGCAATTTGTT 59.061 41.667 9.98 0.00 0.00 2.83
42 43 5.413523 CCCTTAGTACGTAGGCAATTTGTTT 59.586 40.000 9.98 0.00 0.00 2.83
43 44 6.402875 CCCTTAGTACGTAGGCAATTTGTTTC 60.403 42.308 9.98 0.00 0.00 2.78
44 45 6.370718 CCTTAGTACGTAGGCAATTTGTTTCT 59.629 38.462 0.00 0.00 0.00 2.52
45 46 7.546667 CCTTAGTACGTAGGCAATTTGTTTCTA 59.453 37.037 0.00 0.00 0.00 2.10
46 47 8.830201 TTAGTACGTAGGCAATTTGTTTCTAA 57.170 30.769 0.00 0.00 0.00 2.10
47 48 7.733402 AGTACGTAGGCAATTTGTTTCTAAA 57.267 32.000 0.00 0.00 0.00 1.85
48 49 7.803724 AGTACGTAGGCAATTTGTTTCTAAAG 58.196 34.615 0.00 0.68 0.00 1.85
49 50 6.628919 ACGTAGGCAATTTGTTTCTAAAGT 57.371 33.333 0.00 1.16 0.00 2.66
50 51 7.034685 ACGTAGGCAATTTGTTTCTAAAGTT 57.965 32.000 0.00 0.00 0.00 2.66
51 52 7.136772 ACGTAGGCAATTTGTTTCTAAAGTTC 58.863 34.615 0.00 0.00 0.00 3.01
52 53 7.136119 CGTAGGCAATTTGTTTCTAAAGTTCA 58.864 34.615 0.00 0.00 0.00 3.18
53 54 7.112984 CGTAGGCAATTTGTTTCTAAAGTTCAC 59.887 37.037 0.00 0.00 0.00 3.18
54 55 6.872920 AGGCAATTTGTTTCTAAAGTTCACA 58.127 32.000 0.00 0.00 0.00 3.58
55 56 7.500141 AGGCAATTTGTTTCTAAAGTTCACAT 58.500 30.769 0.00 0.00 0.00 3.21
56 57 8.637986 AGGCAATTTGTTTCTAAAGTTCACATA 58.362 29.630 0.00 0.00 0.00 2.29
57 58 9.255304 GGCAATTTGTTTCTAAAGTTCACATAA 57.745 29.630 0.00 0.00 0.00 1.90
69 70 9.398170 CTAAAGTTCACATAAATGTTCTTGTGG 57.602 33.333 0.00 0.00 39.39 4.17
70 71 6.959639 AGTTCACATAAATGTTCTTGTGGT 57.040 33.333 0.00 0.00 39.39 4.16
71 72 6.738114 AGTTCACATAAATGTTCTTGTGGTG 58.262 36.000 0.00 0.00 39.39 4.17
72 73 6.321181 AGTTCACATAAATGTTCTTGTGGTGT 59.679 34.615 0.00 0.00 39.39 4.16
73 74 7.500892 AGTTCACATAAATGTTCTTGTGGTGTA 59.499 33.333 0.00 0.00 39.39 2.90
74 75 7.994425 TCACATAAATGTTCTTGTGGTGTAT 57.006 32.000 0.00 0.00 39.39 2.29
75 76 7.815641 TCACATAAATGTTCTTGTGGTGTATG 58.184 34.615 0.00 0.00 39.39 2.39
76 77 7.663493 TCACATAAATGTTCTTGTGGTGTATGA 59.337 33.333 0.00 0.00 39.39 2.15
77 78 8.296000 CACATAAATGTTCTTGTGGTGTATGAA 58.704 33.333 0.00 0.00 39.39 2.57
78 79 8.514594 ACATAAATGTTCTTGTGGTGTATGAAG 58.485 33.333 0.00 0.00 37.90 3.02
79 80 8.729756 CATAAATGTTCTTGTGGTGTATGAAGA 58.270 33.333 0.00 0.00 0.00 2.87
80 81 6.560253 AATGTTCTTGTGGTGTATGAAGAC 57.440 37.500 0.00 0.00 0.00 3.01
81 82 5.290493 TGTTCTTGTGGTGTATGAAGACT 57.710 39.130 0.00 0.00 0.00 3.24
82 83 5.056480 TGTTCTTGTGGTGTATGAAGACTG 58.944 41.667 0.00 0.00 0.00 3.51
83 84 4.955811 TCTTGTGGTGTATGAAGACTGT 57.044 40.909 0.00 0.00 0.00 3.55
84 85 5.290493 TCTTGTGGTGTATGAAGACTGTT 57.710 39.130 0.00 0.00 0.00 3.16
85 86 5.297547 TCTTGTGGTGTATGAAGACTGTTC 58.702 41.667 0.00 0.00 0.00 3.18
86 87 4.002906 TGTGGTGTATGAAGACTGTTCC 57.997 45.455 0.00 0.00 0.00 3.62
87 88 3.389656 TGTGGTGTATGAAGACTGTTCCA 59.610 43.478 0.00 0.00 0.00 3.53
88 89 4.041567 TGTGGTGTATGAAGACTGTTCCAT 59.958 41.667 0.00 0.00 0.00 3.41
89 90 5.003804 GTGGTGTATGAAGACTGTTCCATT 58.996 41.667 0.00 0.00 0.00 3.16
90 91 5.003160 TGGTGTATGAAGACTGTTCCATTG 58.997 41.667 0.00 0.00 0.00 2.82
91 92 5.003804 GGTGTATGAAGACTGTTCCATTGT 58.996 41.667 0.00 0.00 0.00 2.71
92 93 5.473504 GGTGTATGAAGACTGTTCCATTGTT 59.526 40.000 0.00 0.00 0.00 2.83
93 94 6.373779 GTGTATGAAGACTGTTCCATTGTTG 58.626 40.000 0.00 0.00 0.00 3.33
94 95 3.988379 TGAAGACTGTTCCATTGTTGC 57.012 42.857 0.00 0.00 0.00 4.17
95 96 3.286353 TGAAGACTGTTCCATTGTTGCA 58.714 40.909 0.00 0.00 0.00 4.08
96 97 3.698539 TGAAGACTGTTCCATTGTTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
97 98 4.159321 TGAAGACTGTTCCATTGTTGCAAA 59.841 37.500 0.00 0.00 0.00 3.68
98 99 4.311816 AGACTGTTCCATTGTTGCAAAG 57.688 40.909 0.00 0.00 0.00 2.77
99 100 2.796593 GACTGTTCCATTGTTGCAAAGC 59.203 45.455 0.00 0.00 0.00 3.51
100 101 2.168106 ACTGTTCCATTGTTGCAAAGCA 59.832 40.909 0.00 0.00 36.47 3.91
101 102 3.196463 CTGTTCCATTGTTGCAAAGCAA 58.804 40.909 0.00 2.30 46.80 3.91
124 125 5.622770 AAAATTCGCTATCGTTTTGGACT 57.377 34.783 0.00 0.00 36.96 3.85
125 126 4.600012 AATTCGCTATCGTTTTGGACTG 57.400 40.909 0.00 0.00 36.96 3.51
126 127 3.306917 TTCGCTATCGTTTTGGACTGA 57.693 42.857 0.00 0.00 36.96 3.41
127 128 2.602878 TCGCTATCGTTTTGGACTGAC 58.397 47.619 0.00 0.00 36.96 3.51
128 129 2.029739 TCGCTATCGTTTTGGACTGACA 60.030 45.455 0.00 0.00 36.96 3.58
129 130 2.930040 CGCTATCGTTTTGGACTGACAT 59.070 45.455 0.00 0.00 0.00 3.06
130 131 3.242091 CGCTATCGTTTTGGACTGACATG 60.242 47.826 0.00 0.00 0.00 3.21
131 132 3.684788 GCTATCGTTTTGGACTGACATGT 59.315 43.478 0.00 0.00 0.00 3.21
132 133 4.868171 GCTATCGTTTTGGACTGACATGTA 59.132 41.667 0.00 0.00 0.00 2.29
133 134 5.350365 GCTATCGTTTTGGACTGACATGTAA 59.650 40.000 0.00 0.00 0.00 2.41
134 135 6.037172 GCTATCGTTTTGGACTGACATGTAAT 59.963 38.462 0.00 0.00 0.00 1.89
153 154 9.016623 CATGTAATGCAAAAGATCACTATTGTG 57.983 33.333 0.36 0.36 40.79 3.33
154 155 7.028962 TGTAATGCAAAAGATCACTATTGTGC 58.971 34.615 2.09 0.00 43.49 4.57
155 156 5.648178 ATGCAAAAGATCACTATTGTGCA 57.352 34.783 11.45 11.45 44.10 4.57
156 157 5.450592 TGCAAAAGATCACTATTGTGCAA 57.549 34.783 7.60 0.00 43.49 4.08
157 158 5.840715 TGCAAAAGATCACTATTGTGCAAA 58.159 33.333 7.60 0.00 43.49 3.68
158 159 5.691305 TGCAAAAGATCACTATTGTGCAAAC 59.309 36.000 7.60 0.00 43.49 2.93
159 160 5.691305 GCAAAAGATCACTATTGTGCAAACA 59.309 36.000 2.09 0.00 43.49 2.83
160 161 6.200665 GCAAAAGATCACTATTGTGCAAACAA 59.799 34.615 2.09 0.00 43.49 2.83
161 162 7.254387 GCAAAAGATCACTATTGTGCAAACAAA 60.254 33.333 2.09 0.00 43.49 2.83
162 163 8.602328 CAAAAGATCACTATTGTGCAAACAAAA 58.398 29.630 2.09 0.00 43.49 2.44
163 164 8.891671 AAAGATCACTATTGTGCAAACAAAAT 57.108 26.923 2.09 0.00 43.49 1.82
164 165 8.891671 AAGATCACTATTGTGCAAACAAAATT 57.108 26.923 2.09 0.00 43.49 1.82
165 166 8.301730 AGATCACTATTGTGCAAACAAAATTG 57.698 30.769 2.09 0.00 43.49 2.32
166 167 7.927629 AGATCACTATTGTGCAAACAAAATTGT 59.072 29.630 2.09 0.00 39.21 2.71
167 168 7.840342 TCACTATTGTGCAAACAAAATTGTT 57.160 28.000 5.72 5.72 46.52 2.83
168 169 7.904094 TCACTATTGTGCAAACAAAATTGTTC 58.096 30.769 11.61 2.06 45.30 3.18
169 170 7.763528 TCACTATTGTGCAAACAAAATTGTTCT 59.236 29.630 11.61 1.05 45.30 3.01
170 171 8.389603 CACTATTGTGCAAACAAAATTGTTCTT 58.610 29.630 11.61 0.00 42.60 2.52
182 183 8.376889 ACAAAATTGTTCTTGTTGTTTGAAGT 57.623 26.923 0.00 0.00 38.47 3.01
183 184 8.495148 ACAAAATTGTTCTTGTTGTTTGAAGTC 58.505 29.630 0.00 0.00 38.47 3.01
184 185 6.869421 AATTGTTCTTGTTGTTTGAAGTCG 57.131 33.333 0.00 0.00 0.00 4.18
185 186 5.365403 TTGTTCTTGTTGTTTGAAGTCGT 57.635 34.783 0.00 0.00 0.00 4.34
186 187 6.483385 TTGTTCTTGTTGTTTGAAGTCGTA 57.517 33.333 0.00 0.00 0.00 3.43
187 188 6.483385 TGTTCTTGTTGTTTGAAGTCGTAA 57.517 33.333 0.00 0.00 0.00 3.18
188 189 6.539324 TGTTCTTGTTGTTTGAAGTCGTAAG 58.461 36.000 0.00 0.00 0.00 2.34
214 215 5.419542 CAGGATTTCTGTATGGAGAAACGA 58.580 41.667 0.00 0.00 43.14 3.85
222 223 6.697395 TCTGTATGGAGAAACGATCTGAAAA 58.303 36.000 0.00 0.00 38.96 2.29
228 229 5.825679 TGGAGAAACGATCTGAAAAGGAAAA 59.174 36.000 0.00 0.00 38.96 2.29
230 231 6.637254 GGAGAAACGATCTGAAAAGGAAAAAC 59.363 38.462 0.00 0.00 38.96 2.43
231 232 7.334844 AGAAACGATCTGAAAAGGAAAAACT 57.665 32.000 0.00 0.00 36.88 2.66
232 233 7.772166 AGAAACGATCTGAAAAGGAAAAACTT 58.228 30.769 0.00 0.00 36.88 2.66
233 234 7.702348 AGAAACGATCTGAAAAGGAAAAACTTG 59.298 33.333 0.00 0.00 36.88 3.16
237 243 6.197096 CGATCTGAAAAGGAAAAACTTGTGTG 59.803 38.462 0.00 0.00 0.00 3.82
246 252 1.388547 AAACTTGTGTGCCGTGTGAT 58.611 45.000 0.00 0.00 0.00 3.06
247 253 0.944386 AACTTGTGTGCCGTGTGATC 59.056 50.000 0.00 0.00 0.00 2.92
254 260 0.727398 GTGCCGTGTGATCTTTAGCC 59.273 55.000 0.00 0.00 0.00 3.93
264 270 6.238566 CGTGTGATCTTTAGCCAATCATGATT 60.239 38.462 15.36 15.36 32.45 2.57
274 280 3.846023 GCCAATCATGATTCGCAACTACG 60.846 47.826 26.87 10.43 35.45 3.51
281 287 3.766151 TGATTCGCAACTACGGTTCTAG 58.234 45.455 0.00 0.00 32.73 2.43
300 310 1.359848 GTGATTGCACACTAGACCGG 58.640 55.000 0.00 0.00 44.51 5.28
312 322 1.276421 CTAGACCGGGGCAGATTATGG 59.724 57.143 6.32 0.00 0.00 2.74
331 341 2.435059 GTGGCCGGAGAGAAGTGC 60.435 66.667 5.05 0.00 0.00 4.40
333 343 2.125350 GGCCGGAGAGAAGTGCAG 60.125 66.667 5.05 0.00 0.00 4.41
334 344 2.650116 GGCCGGAGAGAAGTGCAGA 61.650 63.158 5.05 0.00 0.00 4.26
335 345 1.519719 GCCGGAGAGAAGTGCAGAT 59.480 57.895 5.05 0.00 0.00 2.90
336 346 0.107945 GCCGGAGAGAAGTGCAGATT 60.108 55.000 5.05 0.00 0.00 2.40
337 347 1.649664 CCGGAGAGAAGTGCAGATTG 58.350 55.000 0.00 0.00 0.00 2.67
338 348 1.066573 CCGGAGAGAAGTGCAGATTGT 60.067 52.381 0.00 0.00 0.00 2.71
339 349 1.998315 CGGAGAGAAGTGCAGATTGTG 59.002 52.381 0.00 0.00 0.00 3.33
354 364 4.915667 CAGATTGTGCTGATGTTCAAACAG 59.084 41.667 1.69 0.00 43.04 3.16
355 365 4.581824 AGATTGTGCTGATGTTCAAACAGT 59.418 37.500 1.69 0.00 43.04 3.55
356 366 4.717233 TTGTGCTGATGTTCAAACAGTT 57.283 36.364 1.69 0.00 43.04 3.16
357 367 5.826601 TTGTGCTGATGTTCAAACAGTTA 57.173 34.783 1.69 0.00 43.04 2.24
361 372 6.710295 TGTGCTGATGTTCAAACAGTTAGTAT 59.290 34.615 1.69 0.00 43.04 2.12
366 377 9.817365 CTGATGTTCAAACAGTTAGTATCTTTG 57.183 33.333 1.69 0.00 43.04 2.77
399 410 6.571731 CGTTATTATGTCACCGGATGGATACT 60.572 42.308 9.46 0.00 39.21 2.12
401 412 1.029681 TGTCACCGGATGGATACTCG 58.970 55.000 9.46 0.00 39.21 4.18
402 413 0.314302 GTCACCGGATGGATACTCGG 59.686 60.000 9.46 0.00 45.70 4.63
405 416 0.398098 ACCGGATGGATACTCGGGTT 60.398 55.000 9.46 0.00 44.97 4.11
406 417 1.133388 ACCGGATGGATACTCGGGTTA 60.133 52.381 9.46 0.00 44.97 2.85
407 418 2.176889 CCGGATGGATACTCGGGTTAT 58.823 52.381 0.00 0.00 40.05 1.89
408 419 2.565834 CCGGATGGATACTCGGGTTATT 59.434 50.000 0.00 0.00 40.05 1.40
409 420 3.585862 CGGATGGATACTCGGGTTATTG 58.414 50.000 0.00 0.00 37.61 1.90
438 454 2.049433 GTGTCACGGACTCACGGG 60.049 66.667 5.77 0.00 38.97 5.28
439 455 2.520020 TGTCACGGACTCACGGGT 60.520 61.111 5.77 0.00 38.66 5.28
444 464 4.373116 CGGACTCACGGGTGGGTG 62.373 72.222 9.43 0.00 45.82 4.61
471 491 8.080417 GCGTGTAACCACTATCTGATTATCTTA 58.920 37.037 0.00 0.00 39.55 2.10
519 541 4.094887 CACACGTAGCTTAAGATTGGCATT 59.905 41.667 6.67 0.00 0.00 3.56
530 552 5.649782 AAGATTGGCATTCTAGTTTGGTG 57.350 39.130 11.94 0.00 0.00 4.17
542 564 4.819630 TCTAGTTTGGTGTTTTGGCAGTAG 59.180 41.667 0.00 0.00 0.00 2.57
551 581 5.144359 GTGTTTTGGCAGTAGATAAACACG 58.856 41.667 20.86 0.00 44.60 4.49
553 583 2.753055 TGGCAGTAGATAAACACGCA 57.247 45.000 0.00 0.00 0.00 5.24
556 586 2.223044 GGCAGTAGATAAACACGCAAGC 60.223 50.000 0.00 0.00 45.62 4.01
558 588 1.659098 AGTAGATAAACACGCAAGCGC 59.341 47.619 15.09 0.00 44.19 5.92
560 590 0.721718 AGATAAACACGCAAGCGCTC 59.278 50.000 12.06 0.00 44.19 5.03
561 591 0.247695 GATAAACACGCAAGCGCTCC 60.248 55.000 12.06 3.80 44.19 4.70
562 592 0.953471 ATAAACACGCAAGCGCTCCA 60.953 50.000 12.06 0.00 44.19 3.86
563 593 1.837538 TAAACACGCAAGCGCTCCAC 61.838 55.000 12.06 1.61 44.19 4.02
583 613 4.210537 CCACTGGTTACAACTTACAAGACG 59.789 45.833 0.00 0.00 0.00 4.18
584 614 4.807304 CACTGGTTACAACTTACAAGACGT 59.193 41.667 0.00 0.00 0.00 4.34
585 615 5.978919 CACTGGTTACAACTTACAAGACGTA 59.021 40.000 0.00 0.00 0.00 3.57
586 616 6.643770 CACTGGTTACAACTTACAAGACGTAT 59.356 38.462 0.00 0.00 0.00 3.06
597 627 2.028112 ACAAGACGTATCATGTGGCTGT 60.028 45.455 0.00 0.00 35.48 4.40
614 644 2.996621 GCTGTATATGGTCGGCAATCTC 59.003 50.000 0.00 0.00 36.16 2.75
622 652 4.521075 CGGCAATCTCCGTGATGT 57.479 55.556 0.00 0.00 44.18 3.06
631 661 6.818644 GGCAATCTCCGTGATGTTATATATGT 59.181 38.462 0.00 0.00 35.21 2.29
633 663 8.171196 GCAATCTCCGTGATGTTATATATGTTG 58.829 37.037 0.00 0.00 35.21 3.33
639 669 5.409520 CGTGATGTTATATATGTTGGCTGCT 59.590 40.000 0.00 0.00 0.00 4.24
653 683 1.205417 GGCTGCTGGCAAACATACATT 59.795 47.619 12.45 0.00 44.01 2.71
655 685 3.438360 GCTGCTGGCAAACATACATTAC 58.562 45.455 0.00 0.00 41.35 1.89
656 686 3.119531 GCTGCTGGCAAACATACATTACA 60.120 43.478 0.00 0.00 41.35 2.41
657 687 4.440525 GCTGCTGGCAAACATACATTACAT 60.441 41.667 0.00 0.00 41.35 2.29
659 689 6.130298 TGCTGGCAAACATACATTACATAC 57.870 37.500 0.00 0.00 0.00 2.39
660 690 5.649831 TGCTGGCAAACATACATTACATACA 59.350 36.000 0.00 0.00 0.00 2.29
663 693 8.349245 GCTGGCAAACATACATTACATACATAA 58.651 33.333 0.00 0.00 0.00 1.90
675 705 9.988815 ACATTACATACATAATGGAGACTTCTC 57.011 33.333 9.62 0.00 43.84 2.87
679 709 8.311395 ACATACATAATGGAGACTTCTCTGAA 57.689 34.615 6.22 0.00 42.48 3.02
683 713 7.499292 ACATAATGGAGACTTCTCTGAATCTG 58.501 38.462 6.22 1.40 42.48 2.90
684 714 7.344093 ACATAATGGAGACTTCTCTGAATCTGA 59.656 37.037 6.22 0.00 42.48 3.27
685 715 6.811634 AATGGAGACTTCTCTGAATCTGAT 57.188 37.500 6.22 0.00 42.48 2.90
686 716 5.595257 TGGAGACTTCTCTGAATCTGATG 57.405 43.478 6.22 0.00 42.48 3.07
687 717 5.267587 TGGAGACTTCTCTGAATCTGATGA 58.732 41.667 6.22 0.00 42.48 2.92
695 883 6.159299 TCTCTGAATCTGATGATGGAAGAC 57.841 41.667 0.00 0.00 32.44 3.01
714 902 5.547181 AGACGAGTTTTAAAAGCATAGGC 57.453 39.130 0.00 0.00 41.61 3.93
770 976 1.561076 TCCCTCCATCCACATGTGAAG 59.439 52.381 27.46 15.05 0.00 3.02
831 1054 1.571919 CCGTCGTCTCCATTCATTCC 58.428 55.000 0.00 0.00 0.00 3.01
833 1056 2.418746 CCGTCGTCTCCATTCATTCCTT 60.419 50.000 0.00 0.00 0.00 3.36
837 1060 3.519510 TCGTCTCCATTCATTCCTTCCTT 59.480 43.478 0.00 0.00 0.00 3.36
838 1072 3.624861 CGTCTCCATTCATTCCTTCCTTG 59.375 47.826 0.00 0.00 0.00 3.61
850 1084 5.789643 TTCCTTCCTTGTTCCTTTTGATG 57.210 39.130 0.00 0.00 0.00 3.07
851 1085 5.060427 TCCTTCCTTGTTCCTTTTGATGA 57.940 39.130 0.00 0.00 0.00 2.92
852 1086 5.644188 TCCTTCCTTGTTCCTTTTGATGAT 58.356 37.500 0.00 0.00 0.00 2.45
853 1087 6.077322 TCCTTCCTTGTTCCTTTTGATGATT 58.923 36.000 0.00 0.00 0.00 2.57
854 1088 6.554605 TCCTTCCTTGTTCCTTTTGATGATTT 59.445 34.615 0.00 0.00 0.00 2.17
855 1089 6.647895 CCTTCCTTGTTCCTTTTGATGATTTG 59.352 38.462 0.00 0.00 0.00 2.32
856 1090 6.975196 TCCTTGTTCCTTTTGATGATTTGA 57.025 33.333 0.00 0.00 0.00 2.69
857 1091 7.543359 TCCTTGTTCCTTTTGATGATTTGAT 57.457 32.000 0.00 0.00 0.00 2.57
858 1092 7.605449 TCCTTGTTCCTTTTGATGATTTGATC 58.395 34.615 0.00 0.00 0.00 2.92
859 1093 6.815142 CCTTGTTCCTTTTGATGATTTGATCC 59.185 38.462 0.00 0.00 0.00 3.36
860 1094 6.914654 TGTTCCTTTTGATGATTTGATCCA 57.085 33.333 0.00 0.00 0.00 3.41
865 1099 7.632861 TCCTTTTGATGATTTGATCCAGAGTA 58.367 34.615 0.00 0.00 0.00 2.59
872 1106 5.891451 TGATTTGATCCAGAGTAGTACACG 58.109 41.667 2.52 0.00 0.00 4.49
874 1108 5.562506 TTTGATCCAGAGTAGTACACGAG 57.437 43.478 2.52 0.00 0.00 4.18
877 1111 3.263489 TCCAGAGTAGTACACGAGGAG 57.737 52.381 2.52 0.00 0.00 3.69
878 1112 2.836372 TCCAGAGTAGTACACGAGGAGA 59.164 50.000 2.52 0.00 0.00 3.71
880 1114 3.623960 CCAGAGTAGTACACGAGGAGAAG 59.376 52.174 2.52 0.00 0.00 2.85
881 1115 4.505808 CAGAGTAGTACACGAGGAGAAGA 58.494 47.826 2.52 0.00 0.00 2.87
882 1116 4.936411 CAGAGTAGTACACGAGGAGAAGAA 59.064 45.833 2.52 0.00 0.00 2.52
883 1117 4.937015 AGAGTAGTACACGAGGAGAAGAAC 59.063 45.833 2.52 0.00 0.00 3.01
884 1118 3.683822 AGTAGTACACGAGGAGAAGAACG 59.316 47.826 2.52 0.00 0.00 3.95
885 1119 2.502295 AGTACACGAGGAGAAGAACGT 58.498 47.619 0.00 0.00 39.53 3.99
886 1120 3.668447 AGTACACGAGGAGAAGAACGTA 58.332 45.455 0.00 0.00 37.22 3.57
887 1121 3.683822 AGTACACGAGGAGAAGAACGTAG 59.316 47.826 0.00 0.00 37.22 3.51
888 1122 1.811359 ACACGAGGAGAAGAACGTAGG 59.189 52.381 0.00 0.00 37.22 3.18
889 1123 1.811359 CACGAGGAGAAGAACGTAGGT 59.189 52.381 0.00 0.00 37.22 3.08
892 1126 2.608268 GAGGAGAAGAACGTAGGTTGC 58.392 52.381 5.36 0.00 36.24 4.17
913 1158 3.002348 GCACCTGACCTATAAATTCGCAC 59.998 47.826 0.00 0.00 0.00 5.34
916 1161 2.206750 TGACCTATAAATTCGCACGCC 58.793 47.619 0.00 0.00 0.00 5.68
935 1180 2.378445 CCCCCAACGGCATTTTTAAG 57.622 50.000 0.00 0.00 0.00 1.85
936 1181 1.674519 CCCCCAACGGCATTTTTAAGC 60.675 52.381 0.00 0.00 0.00 3.09
937 1182 1.001406 CCCCAACGGCATTTTTAAGCA 59.999 47.619 0.00 0.00 0.00 3.91
938 1183 2.354604 CCCCAACGGCATTTTTAAGCAT 60.355 45.455 0.00 0.00 0.00 3.79
939 1184 3.333804 CCCAACGGCATTTTTAAGCATT 58.666 40.909 0.00 0.00 0.00 3.56
940 1185 3.750652 CCCAACGGCATTTTTAAGCATTT 59.249 39.130 0.00 0.00 0.00 2.32
947 1192 5.406780 CGGCATTTTTAAGCATTTAACCACA 59.593 36.000 0.00 0.00 0.00 4.17
948 1193 6.400940 CGGCATTTTTAAGCATTTAACCACAG 60.401 38.462 0.00 0.00 0.00 3.66
955 1208 3.610911 AGCATTTAACCACAGGAGTAGC 58.389 45.455 0.00 0.00 0.00 3.58
956 1209 3.264450 AGCATTTAACCACAGGAGTAGCT 59.736 43.478 0.00 0.00 0.00 3.32
957 1210 3.375299 GCATTTAACCACAGGAGTAGCTG 59.625 47.826 0.00 0.00 0.00 4.24
958 1211 3.695830 TTTAACCACAGGAGTAGCTGG 57.304 47.619 0.00 0.00 0.00 4.85
959 1212 0.902531 TAACCACAGGAGTAGCTGGC 59.097 55.000 0.00 0.00 0.00 4.85
960 1213 1.127567 AACCACAGGAGTAGCTGGCA 61.128 55.000 0.00 0.00 0.00 4.92
961 1214 1.220206 CCACAGGAGTAGCTGGCAG 59.780 63.158 10.94 10.94 0.00 4.85
963 1216 2.188994 CAGGAGTAGCTGGCAGGC 59.811 66.667 17.64 8.72 0.00 4.85
964 1217 2.284921 AGGAGTAGCTGGCAGGCA 60.285 61.111 17.64 0.00 34.17 4.75
966 1219 2.664081 GGAGTAGCTGGCAGGCACT 61.664 63.158 17.64 13.29 43.88 4.40
967 1220 1.153469 GAGTAGCTGGCAGGCACTC 60.153 63.158 17.64 17.01 34.60 3.51
968 1221 2.124942 GTAGCTGGCAGGCACTCC 60.125 66.667 17.64 0.00 34.60 3.85
969 1222 2.607442 TAGCTGGCAGGCACTCCA 60.607 61.111 17.64 0.00 34.60 3.86
980 1233 0.392461 GGCACTCCATAACCAGCGAA 60.392 55.000 0.00 0.00 0.00 4.70
982 1235 1.398390 GCACTCCATAACCAGCGAAAG 59.602 52.381 0.00 0.00 0.00 2.62
983 1236 2.009774 CACTCCATAACCAGCGAAAGG 58.990 52.381 0.00 0.00 0.00 3.11
995 1248 1.951510 CGAAAGGAGCAAGCAAGCA 59.048 52.632 3.19 0.00 36.85 3.91
999 1252 1.111116 AAGGAGCAAGCAAGCAAGCA 61.111 50.000 10.52 0.00 36.85 3.91
1006 1259 0.107081 AAGCAAGCAAGCAATGGCAA 59.893 45.000 0.00 0.00 44.61 4.52
1022 1284 1.515954 CAACGGCCTCCTCATACGT 59.484 57.895 0.00 0.00 39.74 3.57
1024 1286 1.673808 AACGGCCTCCTCATACGTCC 61.674 60.000 0.00 0.00 36.69 4.79
1086 1348 2.361737 GGCTGCCCCTGGTTTCTC 60.362 66.667 7.66 0.00 0.00 2.87
1091 1353 3.090765 CCCCTGGTTTCTCCCTGG 58.909 66.667 0.00 0.00 41.88 4.45
1093 1355 0.549169 CCCCTGGTTTCTCCCTGGTA 60.549 60.000 0.00 0.00 40.92 3.25
1119 1381 1.617947 GCCCTGGACCTACACCTGAG 61.618 65.000 0.00 0.00 0.00 3.35
1134 1396 1.460497 TGAGCCCACACCTACACCA 60.460 57.895 0.00 0.00 0.00 4.17
1135 1397 1.057275 TGAGCCCACACCTACACCAA 61.057 55.000 0.00 0.00 0.00 3.67
1136 1398 0.109723 GAGCCCACACCTACACCAAA 59.890 55.000 0.00 0.00 0.00 3.28
1137 1399 0.777446 AGCCCACACCTACACCAAAT 59.223 50.000 0.00 0.00 0.00 2.32
1143 1405 1.422402 ACACCTACACCAAATCCCGTT 59.578 47.619 0.00 0.00 0.00 4.44
1148 1410 2.360726 ACCAAATCCCGTTCCCGC 60.361 61.111 0.00 0.00 0.00 6.13
1206 1568 0.620556 CCATTACACCTCCACCTGCT 59.379 55.000 0.00 0.00 0.00 4.24
1209 1571 1.541310 TTACACCTCCACCTGCTCCG 61.541 60.000 0.00 0.00 0.00 4.63
1255 1626 1.302192 GGCAGCACCAACGGTTCTA 60.302 57.895 0.00 0.00 38.86 2.10
1258 1636 0.250124 CAGCACCAACGGTTCTACCA 60.250 55.000 0.00 0.00 38.47 3.25
1263 1641 1.740296 CAACGGTTCTACCAGCGGG 60.740 63.158 0.00 0.00 42.02 6.13
1347 1733 2.677003 CGCGTGCGGGTTCAAGAAT 61.677 57.895 6.30 0.00 35.56 2.40
1404 1790 2.218603 GGAAACGAGCCACTCTTCAAA 58.781 47.619 0.00 0.00 0.00 2.69
1470 1867 3.746492 GCGGTTTAGTTGATTGACAGAGT 59.254 43.478 0.00 0.00 0.00 3.24
1471 1868 4.377431 GCGGTTTAGTTGATTGACAGAGTG 60.377 45.833 0.00 0.00 0.00 3.51
1472 1869 4.377431 CGGTTTAGTTGATTGACAGAGTGC 60.377 45.833 0.00 0.00 0.00 4.40
1473 1870 4.083271 GGTTTAGTTGATTGACAGAGTGCC 60.083 45.833 0.00 0.00 0.00 5.01
1478 1894 1.271001 TGATTGACAGAGTGCCAGTGG 60.271 52.381 4.20 4.20 0.00 4.00
1610 2252 2.100418 GACATGAACTACTACCCCGTCC 59.900 54.545 0.00 0.00 0.00 4.79
1744 2386 1.895020 GCCAGTACACGGGGATGTCA 61.895 60.000 0.00 0.00 33.85 3.58
1745 2387 0.108329 CCAGTACACGGGGATGTCAC 60.108 60.000 0.00 0.00 33.85 3.67
1756 2398 1.066143 GGGATGTCACTGACGTTCCAT 60.066 52.381 20.33 1.87 44.47 3.41
1873 2535 3.770040 CCGACGGTGGCATGGAGA 61.770 66.667 5.48 0.00 0.00 3.71
1885 2547 1.064463 GCATGGAGACCAATGAGGGAA 60.064 52.381 0.00 0.00 43.89 3.97
2105 3285 2.933906 CCATGCATGCAAGGATTTGTTC 59.066 45.455 33.21 0.00 36.99 3.18
2116 3296 3.084786 AGGATTTGTTCTGCCAAGCTAC 58.915 45.455 0.00 0.00 0.00 3.58
2144 3330 4.027755 CGTTGCTTGTGACGTCCT 57.972 55.556 14.12 0.00 34.75 3.85
2164 3360 2.253051 TGCGTGTCCTCGTCGTGTA 61.253 57.895 0.00 0.00 0.00 2.90
2173 3369 2.497675 TCCTCGTCGTGTACTACCTACT 59.502 50.000 0.00 0.00 0.00 2.57
2178 3374 5.103000 TCGTCGTGTACTACCTACTTACTC 58.897 45.833 0.00 0.00 0.00 2.59
2179 3375 4.268884 CGTCGTGTACTACCTACTTACTCC 59.731 50.000 0.00 0.00 0.00 3.85
2180 3376 4.572795 GTCGTGTACTACCTACTTACTCCC 59.427 50.000 0.00 0.00 0.00 4.30
2181 3377 4.471386 TCGTGTACTACCTACTTACTCCCT 59.529 45.833 0.00 0.00 0.00 4.20
2182 3378 5.045578 TCGTGTACTACCTACTTACTCCCTT 60.046 44.000 0.00 0.00 0.00 3.95
2183 3379 5.649831 CGTGTACTACCTACTTACTCCCTTT 59.350 44.000 0.00 0.00 0.00 3.11
2184 3380 6.404074 CGTGTACTACCTACTTACTCCCTTTG 60.404 46.154 0.00 0.00 0.00 2.77
2185 3381 6.435591 GTGTACTACCTACTTACTCCCTTTGT 59.564 42.308 0.00 0.00 0.00 2.83
2186 3382 6.660949 TGTACTACCTACTTACTCCCTTTGTC 59.339 42.308 0.00 0.00 0.00 3.18
2187 3383 5.022122 ACTACCTACTTACTCCCTTTGTCC 58.978 45.833 0.00 0.00 0.00 4.02
2188 3384 2.830321 ACCTACTTACTCCCTTTGTCCG 59.170 50.000 0.00 0.00 0.00 4.79
2189 3385 3.094572 CCTACTTACTCCCTTTGTCCGA 58.905 50.000 0.00 0.00 0.00 4.55
2190 3386 3.512724 CCTACTTACTCCCTTTGTCCGAA 59.487 47.826 0.00 0.00 0.00 4.30
2191 3387 4.020839 CCTACTTACTCCCTTTGTCCGAAA 60.021 45.833 0.00 0.00 0.00 3.46
2192 3388 4.426736 ACTTACTCCCTTTGTCCGAAAA 57.573 40.909 0.00 0.00 0.00 2.29
2193 3389 4.981812 ACTTACTCCCTTTGTCCGAAAAT 58.018 39.130 0.00 0.00 0.00 1.82
2194 3390 6.117975 ACTTACTCCCTTTGTCCGAAAATA 57.882 37.500 0.00 0.00 0.00 1.40
2195 3391 5.936372 ACTTACTCCCTTTGTCCGAAAATAC 59.064 40.000 0.00 0.00 0.00 1.89
2196 3392 4.635699 ACTCCCTTTGTCCGAAAATACT 57.364 40.909 0.00 0.00 0.00 2.12
2197 3393 4.981812 ACTCCCTTTGTCCGAAAATACTT 58.018 39.130 0.00 0.00 0.00 2.24
2198 3394 4.760204 ACTCCCTTTGTCCGAAAATACTTG 59.240 41.667 0.00 0.00 0.00 3.16
2199 3395 4.721132 TCCCTTTGTCCGAAAATACTTGT 58.279 39.130 0.00 0.00 0.00 3.16
2200 3396 4.758165 TCCCTTTGTCCGAAAATACTTGTC 59.242 41.667 0.00 0.00 0.00 3.18
2201 3397 4.517453 CCCTTTGTCCGAAAATACTTGTCA 59.483 41.667 0.00 0.00 0.00 3.58
2202 3398 5.183140 CCCTTTGTCCGAAAATACTTGTCAT 59.817 40.000 0.00 0.00 0.00 3.06
2203 3399 6.314784 CCTTTGTCCGAAAATACTTGTCATC 58.685 40.000 0.00 0.00 0.00 2.92
2204 3400 6.072728 CCTTTGTCCGAAAATACTTGTCATCA 60.073 38.462 0.00 0.00 0.00 3.07
2205 3401 6.869315 TTGTCCGAAAATACTTGTCATCAA 57.131 33.333 0.00 0.00 0.00 2.57
2206 3402 6.869315 TGTCCGAAAATACTTGTCATCAAA 57.131 33.333 0.00 0.00 32.87 2.69
2207 3403 7.265647 TGTCCGAAAATACTTGTCATCAAAA 57.734 32.000 0.00 0.00 32.87 2.44
2208 3404 7.881142 TGTCCGAAAATACTTGTCATCAAAAT 58.119 30.769 0.00 0.00 32.87 1.82
2209 3405 7.807433 TGTCCGAAAATACTTGTCATCAAAATG 59.193 33.333 0.00 0.00 32.87 2.32
2210 3406 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2211 3407 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2212 3408 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
2255 3451 9.976511 AATGATAAATATTTCCGTACGAAGAGA 57.023 29.630 18.76 1.80 0.00 3.10
2276 3472 7.299586 AGAGAGTACGAGTTATCATTTATCGC 58.700 38.462 0.00 0.00 36.89 4.58
2280 3476 4.856664 ACGAGTTATCATTTATCGCGTCT 58.143 39.130 5.77 0.00 36.89 4.18
2400 7789 9.914834 AGTTATATGTAAGGTGCCTGAAAATTA 57.085 29.630 0.00 0.00 0.00 1.40
2411 7800 5.120053 GTGCCTGAAAATTAAATTTGGGTCG 59.880 40.000 0.00 0.00 31.77 4.79
2415 7804 6.406692 TGAAAATTAAATTTGGGTCGGTCA 57.593 33.333 0.00 0.00 31.77 4.02
2429 7819 2.035321 GTCGGTCAATTTTTCTGGCCAA 59.965 45.455 7.01 0.00 38.56 4.52
2441 7831 2.250031 TCTGGCCAATGATTGTTGCTT 58.750 42.857 7.01 0.00 0.00 3.91
2447 7837 4.309099 GCCAATGATTGTTGCTTCAAGAA 58.691 39.130 4.27 0.00 31.53 2.52
2495 7885 9.664332 TTTTCATTTGGAGAAATTTTTGTCTGA 57.336 25.926 0.00 0.00 35.17 3.27
2498 7888 7.385752 TCATTTGGAGAAATTTTTGTCTGATGC 59.614 33.333 0.00 0.00 31.72 3.91
2515 7905 3.818210 TGATGCGTGGTATGTCTTGTTTT 59.182 39.130 0.00 0.00 0.00 2.43
2552 7942 4.810345 TGACTGACCTAAATTTTGGGGTT 58.190 39.130 20.55 2.21 35.25 4.11
2564 7954 6.605471 AATTTTGGGGTTAGTCAATTCCTC 57.395 37.500 0.00 0.00 0.00 3.71
2567 7957 2.307686 TGGGGTTAGTCAATTCCTCCAC 59.692 50.000 0.00 0.00 0.00 4.02
2573 7963 0.539986 GTCAATTCCTCCACGGGCTA 59.460 55.000 0.00 0.00 0.00 3.93
2591 7981 2.680805 GCTAATGCCCAGTTAGCTGTGA 60.681 50.000 5.81 0.00 46.53 3.58
2600 7995 0.243907 GTTAGCTGTGAGACCGAGCA 59.756 55.000 0.00 0.00 35.03 4.26
2601 7996 0.528017 TTAGCTGTGAGACCGAGCAG 59.472 55.000 0.00 0.00 35.03 4.24
2604 7999 0.456995 GCTGTGAGACCGAGCAGTAC 60.457 60.000 0.00 0.00 32.70 2.73
2605 8000 1.169577 CTGTGAGACCGAGCAGTACT 58.830 55.000 0.00 0.00 0.00 2.73
2613 8008 7.447545 TGTGAGACCGAGCAGTACTTATATATT 59.552 37.037 0.00 0.00 0.00 1.28
2614 8009 8.298140 GTGAGACCGAGCAGTACTTATATATTT 58.702 37.037 0.00 0.00 0.00 1.40
2664 8059 0.889186 AAACGCTCAACTGGCCGAAT 60.889 50.000 0.00 0.00 0.00 3.34
2666 8061 2.486966 GCTCAACTGGCCGAATGC 59.513 61.111 0.00 0.00 40.16 3.56
2683 8078 4.629634 CGAATGCCTTCACTATACAACACA 59.370 41.667 2.57 0.00 0.00 3.72
2709 8104 2.741092 TGGGTTCCACGCACTCTC 59.259 61.111 0.00 0.00 36.06 3.20
2725 8120 4.811063 GCACTCTCCACCTCCCTTAATTTT 60.811 45.833 0.00 0.00 0.00 1.82
2726 8121 5.325239 CACTCTCCACCTCCCTTAATTTTT 58.675 41.667 0.00 0.00 0.00 1.94
2763 8158 2.040278 TCCAACATCTTCTTCCCCACAG 59.960 50.000 0.00 0.00 0.00 3.66
2769 8164 0.979665 CTTCTTCCCCACAGCTCTCA 59.020 55.000 0.00 0.00 0.00 3.27
2783 8178 4.063689 CAGCTCTCATCTCTCTCTCTCTC 58.936 52.174 0.00 0.00 0.00 3.20
2787 8182 5.430886 CTCTCATCTCTCTCTCTCTCACAA 58.569 45.833 0.00 0.00 0.00 3.33
2841 8236 0.179134 GCGTACTCGTGCAGGAAGAT 60.179 55.000 10.76 1.96 39.49 2.40
2844 8239 0.175760 TACTCGTGCAGGAAGATGCC 59.824 55.000 10.76 0.00 45.91 4.40
2872 8267 2.758327 TCGTCGGTGGATGGGAGG 60.758 66.667 0.00 0.00 0.00 4.30
2877 8272 0.031111 TCGGTGGATGGGAGGAAGAT 60.031 55.000 0.00 0.00 0.00 2.40
2885 8280 1.002069 TGGGAGGAAGATTGTGGCAT 58.998 50.000 0.00 0.00 0.00 4.40
2889 8284 2.424956 GGAGGAAGATTGTGGCATGAAC 59.575 50.000 0.00 0.00 0.00 3.18
2892 8287 2.159517 GGAAGATTGTGGCATGAACGAC 60.160 50.000 0.00 0.00 0.00 4.34
2893 8288 2.183478 AGATTGTGGCATGAACGACA 57.817 45.000 0.00 0.00 0.00 4.35
2954 8351 1.166531 ACACTTCCTTGCAAGTCGCC 61.167 55.000 24.35 0.00 41.33 5.54
2955 8352 0.886490 CACTTCCTTGCAAGTCGCCT 60.886 55.000 24.35 0.67 41.33 5.52
2960 8357 3.606065 CTTGCAAGTCGCCTGCAGC 62.606 63.158 18.65 2.87 41.33 5.25
2991 8388 3.665675 GATCTGGCCTCCGCGTTGT 62.666 63.158 3.32 0.00 35.02 3.32
2992 8389 3.958147 ATCTGGCCTCCGCGTTGTG 62.958 63.158 3.32 0.00 35.02 3.33
3012 8409 2.435410 TCGGAGTCGACAGCGCTA 60.435 61.111 19.50 0.00 40.88 4.26
3033 8430 4.131376 CGCTGGAGGGCAGTATTG 57.869 61.111 0.00 0.00 0.00 1.90
3037 8434 0.537188 CTGGAGGGCAGTATTGTCGT 59.463 55.000 0.00 0.00 0.00 4.34
3038 8435 0.535335 TGGAGGGCAGTATTGTCGTC 59.465 55.000 4.13 4.13 41.75 4.20
3046 8443 2.798680 CAGTATTGTCGTCGGAGAAGG 58.201 52.381 0.00 0.00 39.69 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.745489 GCATCTCCAACACCGACCC 60.745 63.158 0.00 0.00 0.00 4.46
1 2 1.745489 GGCATCTCCAACACCGACC 60.745 63.158 0.00 0.00 34.01 4.79
2 3 1.745489 GGGCATCTCCAACACCGAC 60.745 63.158 0.00 0.00 36.21 4.79
3 4 1.488705 AAGGGCATCTCCAACACCGA 61.489 55.000 0.00 0.00 36.21 4.69
4 5 0.251916 TAAGGGCATCTCCAACACCG 59.748 55.000 0.00 0.00 36.21 4.94
5 6 1.282157 ACTAAGGGCATCTCCAACACC 59.718 52.381 0.00 0.00 36.21 4.16
6 7 2.789409 ACTAAGGGCATCTCCAACAC 57.211 50.000 0.00 0.00 36.21 3.32
7 8 2.167693 CGTACTAAGGGCATCTCCAACA 59.832 50.000 0.00 0.00 36.21 3.33
8 9 2.167900 ACGTACTAAGGGCATCTCCAAC 59.832 50.000 0.00 0.00 36.21 3.77
9 10 2.463752 ACGTACTAAGGGCATCTCCAA 58.536 47.619 0.00 0.00 36.21 3.53
10 11 2.154567 ACGTACTAAGGGCATCTCCA 57.845 50.000 0.00 0.00 36.21 3.86
11 12 2.557490 CCTACGTACTAAGGGCATCTCC 59.443 54.545 0.00 0.00 0.00 3.71
12 13 2.030096 GCCTACGTACTAAGGGCATCTC 60.030 54.545 15.72 0.00 42.08 2.75
13 14 1.962100 GCCTACGTACTAAGGGCATCT 59.038 52.381 15.72 0.00 42.08 2.90
14 15 1.684983 TGCCTACGTACTAAGGGCATC 59.315 52.381 18.52 0.00 46.35 3.91
15 16 1.784358 TGCCTACGTACTAAGGGCAT 58.216 50.000 18.52 0.00 46.35 4.40
17 18 2.904697 ATTGCCTACGTACTAAGGGC 57.095 50.000 14.19 14.19 42.73 5.19
18 19 4.510571 ACAAATTGCCTACGTACTAAGGG 58.489 43.478 11.19 0.00 33.17 3.95
19 20 6.370718 AGAAACAAATTGCCTACGTACTAAGG 59.629 38.462 6.10 6.10 35.86 2.69
20 21 7.360575 AGAAACAAATTGCCTACGTACTAAG 57.639 36.000 0.00 0.00 0.00 2.18
21 22 8.830201 TTAGAAACAAATTGCCTACGTACTAA 57.170 30.769 0.00 0.00 0.00 2.24
22 23 8.830201 TTTAGAAACAAATTGCCTACGTACTA 57.170 30.769 0.00 0.00 0.00 1.82
23 24 7.443272 ACTTTAGAAACAAATTGCCTACGTACT 59.557 33.333 0.00 0.00 0.00 2.73
24 25 7.578852 ACTTTAGAAACAAATTGCCTACGTAC 58.421 34.615 0.00 0.00 0.00 3.67
25 26 7.733402 ACTTTAGAAACAAATTGCCTACGTA 57.267 32.000 0.00 0.00 0.00 3.57
26 27 6.628919 ACTTTAGAAACAAATTGCCTACGT 57.371 33.333 0.00 0.00 0.00 3.57
27 28 7.112984 GTGAACTTTAGAAACAAATTGCCTACG 59.887 37.037 0.00 0.00 0.00 3.51
28 29 7.918562 TGTGAACTTTAGAAACAAATTGCCTAC 59.081 33.333 0.00 0.00 0.00 3.18
29 30 8.001881 TGTGAACTTTAGAAACAAATTGCCTA 57.998 30.769 0.00 0.00 0.00 3.93
30 31 6.872920 TGTGAACTTTAGAAACAAATTGCCT 58.127 32.000 0.00 0.00 0.00 4.75
31 32 7.713764 ATGTGAACTTTAGAAACAAATTGCC 57.286 32.000 0.00 0.00 0.00 4.52
43 44 9.398170 CCACAAGAACATTTATGTGAACTTTAG 57.602 33.333 6.34 0.20 44.52 1.85
44 45 8.908903 ACCACAAGAACATTTATGTGAACTTTA 58.091 29.630 6.34 0.00 44.52 1.85
45 46 7.706179 CACCACAAGAACATTTATGTGAACTTT 59.294 33.333 6.34 0.00 44.52 2.66
46 47 7.147915 ACACCACAAGAACATTTATGTGAACTT 60.148 33.333 6.34 1.37 44.52 2.66
47 48 6.321181 ACACCACAAGAACATTTATGTGAACT 59.679 34.615 6.34 0.00 44.52 3.01
48 49 6.503524 ACACCACAAGAACATTTATGTGAAC 58.496 36.000 6.34 0.00 44.52 3.18
49 50 6.707440 ACACCACAAGAACATTTATGTGAA 57.293 33.333 6.34 0.00 44.52 3.18
50 51 7.663493 TCATACACCACAAGAACATTTATGTGA 59.337 33.333 6.34 0.00 44.52 3.58
51 52 7.815641 TCATACACCACAAGAACATTTATGTG 58.184 34.615 0.00 0.00 41.61 3.21
52 53 7.994425 TCATACACCACAAGAACATTTATGT 57.006 32.000 0.00 0.00 44.20 2.29
53 54 8.729756 TCTTCATACACCACAAGAACATTTATG 58.270 33.333 0.00 0.00 0.00 1.90
54 55 8.730680 GTCTTCATACACCACAAGAACATTTAT 58.269 33.333 0.00 0.00 0.00 1.40
55 56 7.936847 AGTCTTCATACACCACAAGAACATTTA 59.063 33.333 0.00 0.00 0.00 1.40
56 57 6.772716 AGTCTTCATACACCACAAGAACATTT 59.227 34.615 0.00 0.00 0.00 2.32
57 58 6.205464 CAGTCTTCATACACCACAAGAACATT 59.795 38.462 0.00 0.00 0.00 2.71
58 59 5.702670 CAGTCTTCATACACCACAAGAACAT 59.297 40.000 0.00 0.00 0.00 2.71
59 60 5.056480 CAGTCTTCATACACCACAAGAACA 58.944 41.667 0.00 0.00 0.00 3.18
60 61 5.057149 ACAGTCTTCATACACCACAAGAAC 58.943 41.667 0.00 0.00 0.00 3.01
61 62 5.290493 ACAGTCTTCATACACCACAAGAA 57.710 39.130 0.00 0.00 0.00 2.52
62 63 4.955811 ACAGTCTTCATACACCACAAGA 57.044 40.909 0.00 0.00 0.00 3.02
63 64 4.452455 GGAACAGTCTTCATACACCACAAG 59.548 45.833 0.00 0.00 0.00 3.16
64 65 4.141597 TGGAACAGTCTTCATACACCACAA 60.142 41.667 0.00 0.00 0.00 3.33
65 66 3.389656 TGGAACAGTCTTCATACACCACA 59.610 43.478 0.00 0.00 0.00 4.17
66 67 4.002906 TGGAACAGTCTTCATACACCAC 57.997 45.455 0.00 0.00 0.00 4.16
76 77 7.358655 TGCTTTGCAACAATGGAACAGTCTT 62.359 40.000 0.00 0.00 37.43 3.01
77 78 5.946553 TGCTTTGCAACAATGGAACAGTCT 61.947 41.667 0.00 0.00 37.43 3.24
78 79 3.737663 TGCTTTGCAACAATGGAACAGTC 60.738 43.478 0.00 0.00 37.43 3.51
79 80 2.168106 TGCTTTGCAACAATGGAACAGT 59.832 40.909 0.00 0.00 37.43 3.55
80 81 2.823984 TGCTTTGCAACAATGGAACAG 58.176 42.857 0.00 0.00 37.43 3.16
81 82 2.975732 TGCTTTGCAACAATGGAACA 57.024 40.000 0.00 0.00 38.31 3.18
101 102 5.856455 CAGTCCAAAACGATAGCGAATTTTT 59.144 36.000 7.69 0.29 41.64 1.94
102 103 5.180492 TCAGTCCAAAACGATAGCGAATTTT 59.820 36.000 7.69 1.11 41.64 1.82
103 104 4.693566 TCAGTCCAAAACGATAGCGAATTT 59.306 37.500 7.69 5.20 41.64 1.82
104 105 4.092968 GTCAGTCCAAAACGATAGCGAATT 59.907 41.667 7.69 0.00 41.64 2.17
105 106 3.617263 GTCAGTCCAAAACGATAGCGAAT 59.383 43.478 7.69 0.00 41.64 3.34
106 107 2.991190 GTCAGTCCAAAACGATAGCGAA 59.009 45.455 7.69 0.00 41.64 4.70
107 108 2.029739 TGTCAGTCCAAAACGATAGCGA 60.030 45.455 7.69 0.00 41.64 4.93
108 109 2.333926 TGTCAGTCCAAAACGATAGCG 58.666 47.619 0.00 0.00 44.79 4.26
109 110 3.684788 ACATGTCAGTCCAAAACGATAGC 59.315 43.478 0.00 0.00 42.67 2.97
110 111 6.961359 TTACATGTCAGTCCAAAACGATAG 57.039 37.500 0.00 0.00 46.19 2.08
111 112 6.183360 GCATTACATGTCAGTCCAAAACGATA 60.183 38.462 0.00 0.00 0.00 2.92
112 113 5.391950 GCATTACATGTCAGTCCAAAACGAT 60.392 40.000 0.00 0.00 0.00 3.73
113 114 4.083537 GCATTACATGTCAGTCCAAAACGA 60.084 41.667 0.00 0.00 0.00 3.85
114 115 4.158384 GCATTACATGTCAGTCCAAAACG 58.842 43.478 0.00 0.00 0.00 3.60
115 116 5.119931 TGCATTACATGTCAGTCCAAAAC 57.880 39.130 0.00 0.00 0.00 2.43
116 117 5.781210 TTGCATTACATGTCAGTCCAAAA 57.219 34.783 0.00 0.00 0.00 2.44
117 118 5.781210 TTTGCATTACATGTCAGTCCAAA 57.219 34.783 0.00 4.68 0.00 3.28
118 119 5.534278 TCTTTTGCATTACATGTCAGTCCAA 59.466 36.000 0.00 0.00 0.00 3.53
119 120 5.069318 TCTTTTGCATTACATGTCAGTCCA 58.931 37.500 0.00 0.00 0.00 4.02
120 121 5.627499 TCTTTTGCATTACATGTCAGTCC 57.373 39.130 0.00 0.00 0.00 3.85
121 122 6.744537 GTGATCTTTTGCATTACATGTCAGTC 59.255 38.462 0.00 0.00 0.00 3.51
122 123 6.432162 AGTGATCTTTTGCATTACATGTCAGT 59.568 34.615 0.00 0.00 0.00 3.41
123 124 6.849502 AGTGATCTTTTGCATTACATGTCAG 58.150 36.000 0.00 0.00 0.00 3.51
124 125 6.822667 AGTGATCTTTTGCATTACATGTCA 57.177 33.333 0.00 0.00 0.00 3.58
125 126 9.229784 CAATAGTGATCTTTTGCATTACATGTC 57.770 33.333 0.00 0.00 0.00 3.06
126 127 8.742777 ACAATAGTGATCTTTTGCATTACATGT 58.257 29.630 2.69 2.69 36.54 3.21
140 141 7.927629 ACAATTTTGTTTGCACAATAGTGATCT 59.072 29.630 12.44 0.00 42.88 2.75
141 142 8.075593 ACAATTTTGTTTGCACAATAGTGATC 57.924 30.769 12.44 0.00 42.88 2.92
157 158 8.376889 ACTTCAAACAACAAGAACAATTTTGT 57.623 26.923 0.00 0.00 44.72 2.83
158 159 7.683676 CGACTTCAAACAACAAGAACAATTTTG 59.316 33.333 0.00 0.00 0.00 2.44
159 160 7.383843 ACGACTTCAAACAACAAGAACAATTTT 59.616 29.630 0.00 0.00 0.00 1.82
160 161 6.866248 ACGACTTCAAACAACAAGAACAATTT 59.134 30.769 0.00 0.00 0.00 1.82
161 162 6.386654 ACGACTTCAAACAACAAGAACAATT 58.613 32.000 0.00 0.00 0.00 2.32
162 163 5.949735 ACGACTTCAAACAACAAGAACAAT 58.050 33.333 0.00 0.00 0.00 2.71
163 164 5.365403 ACGACTTCAAACAACAAGAACAA 57.635 34.783 0.00 0.00 0.00 2.83
164 165 6.369340 TCTTACGACTTCAAACAACAAGAACA 59.631 34.615 0.00 0.00 0.00 3.18
165 166 6.768078 TCTTACGACTTCAAACAACAAGAAC 58.232 36.000 0.00 0.00 0.00 3.01
166 167 6.971527 TCTTACGACTTCAAACAACAAGAA 57.028 33.333 0.00 0.00 0.00 2.52
167 168 6.369340 TGTTCTTACGACTTCAAACAACAAGA 59.631 34.615 0.00 0.00 0.00 3.02
168 169 6.539324 TGTTCTTACGACTTCAAACAACAAG 58.461 36.000 0.00 0.00 0.00 3.16
169 170 6.402766 CCTGTTCTTACGACTTCAAACAACAA 60.403 38.462 0.00 0.00 0.00 2.83
170 171 5.064198 CCTGTTCTTACGACTTCAAACAACA 59.936 40.000 0.00 0.00 0.00 3.33
171 172 5.292589 TCCTGTTCTTACGACTTCAAACAAC 59.707 40.000 0.00 0.00 0.00 3.32
172 173 5.421277 TCCTGTTCTTACGACTTCAAACAA 58.579 37.500 0.00 0.00 0.00 2.83
173 174 5.013568 TCCTGTTCTTACGACTTCAAACA 57.986 39.130 0.00 0.00 0.00 2.83
174 175 6.541111 AATCCTGTTCTTACGACTTCAAAC 57.459 37.500 0.00 0.00 0.00 2.93
175 176 6.990349 AGAAATCCTGTTCTTACGACTTCAAA 59.010 34.615 0.00 0.00 34.03 2.69
176 177 6.423905 CAGAAATCCTGTTCTTACGACTTCAA 59.576 38.462 0.00 0.00 35.63 2.69
177 178 5.926542 CAGAAATCCTGTTCTTACGACTTCA 59.073 40.000 0.00 0.00 35.63 3.02
178 179 6.396459 CAGAAATCCTGTTCTTACGACTTC 57.604 41.667 0.00 0.00 35.63 3.01
191 192 5.419542 TCGTTTCTCCATACAGAAATCCTG 58.580 41.667 0.00 0.00 42.88 3.86
192 193 5.677319 TCGTTTCTCCATACAGAAATCCT 57.323 39.130 0.00 0.00 42.88 3.24
193 194 6.201806 CAGATCGTTTCTCCATACAGAAATCC 59.798 42.308 0.00 0.00 42.88 3.01
194 195 6.980978 TCAGATCGTTTCTCCATACAGAAATC 59.019 38.462 0.00 0.00 42.88 2.17
195 196 6.878317 TCAGATCGTTTCTCCATACAGAAAT 58.122 36.000 0.00 0.00 42.88 2.17
200 201 5.874810 CCTTTTCAGATCGTTTCTCCATACA 59.125 40.000 0.00 0.00 29.93 2.29
201 202 6.106673 TCCTTTTCAGATCGTTTCTCCATAC 58.893 40.000 0.00 0.00 29.93 2.39
208 209 7.488150 ACAAGTTTTTCCTTTTCAGATCGTTTC 59.512 33.333 0.00 0.00 0.00 2.78
212 213 6.197096 CACACAAGTTTTTCCTTTTCAGATCG 59.803 38.462 0.00 0.00 0.00 3.69
214 215 5.812127 GCACACAAGTTTTTCCTTTTCAGAT 59.188 36.000 0.00 0.00 0.00 2.90
222 223 1.134175 CACGGCACACAAGTTTTTCCT 59.866 47.619 0.00 0.00 0.00 3.36
228 229 0.944386 GATCACACGGCACACAAGTT 59.056 50.000 0.00 0.00 0.00 2.66
230 231 1.229428 AAGATCACACGGCACACAAG 58.771 50.000 0.00 0.00 0.00 3.16
231 232 1.674359 AAAGATCACACGGCACACAA 58.326 45.000 0.00 0.00 0.00 3.33
232 233 2.412870 CTAAAGATCACACGGCACACA 58.587 47.619 0.00 0.00 0.00 3.72
233 234 1.128692 GCTAAAGATCACACGGCACAC 59.871 52.381 0.00 0.00 0.00 3.82
237 243 1.448985 TTGGCTAAAGATCACACGGC 58.551 50.000 0.00 0.00 0.00 5.68
246 252 4.818534 GCGAATCATGATTGGCTAAAGA 57.181 40.909 34.79 0.00 45.25 2.52
254 260 3.309682 ACCGTAGTTGCGAATCATGATTG 59.690 43.478 25.37 17.11 0.00 2.67
264 270 2.153645 TCACTAGAACCGTAGTTGCGA 58.846 47.619 0.00 0.00 35.94 5.10
281 287 1.359848 CCGGTCTAGTGTGCAATCAC 58.640 55.000 0.00 0.00 43.40 3.06
295 305 1.600916 GCCATAATCTGCCCCGGTC 60.601 63.158 0.00 0.00 0.00 4.79
300 310 2.555547 GCCACGCCATAATCTGCCC 61.556 63.158 0.00 0.00 0.00 5.36
312 322 4.070552 ACTTCTCTCCGGCCACGC 62.071 66.667 2.24 0.00 39.22 5.34
331 341 4.862350 TGTTTGAACATCAGCACAATCTG 58.138 39.130 0.00 0.00 33.17 2.90
333 343 4.863491 ACTGTTTGAACATCAGCACAATC 58.137 39.130 0.00 0.00 38.41 2.67
334 344 4.924305 ACTGTTTGAACATCAGCACAAT 57.076 36.364 0.00 0.00 38.41 2.71
335 345 4.717233 AACTGTTTGAACATCAGCACAA 57.283 36.364 0.00 0.00 38.41 3.33
336 346 4.881273 ACTAACTGTTTGAACATCAGCACA 59.119 37.500 8.91 0.00 38.41 4.57
337 347 5.424121 ACTAACTGTTTGAACATCAGCAC 57.576 39.130 8.91 0.00 38.41 4.40
338 348 7.161404 AGATACTAACTGTTTGAACATCAGCA 58.839 34.615 8.91 0.00 38.41 4.41
339 349 7.602517 AGATACTAACTGTTTGAACATCAGC 57.397 36.000 8.91 0.00 38.41 4.26
340 350 9.817365 CAAAGATACTAACTGTTTGAACATCAG 57.183 33.333 8.91 0.00 38.41 2.90
341 351 8.783093 CCAAAGATACTAACTGTTTGAACATCA 58.217 33.333 8.91 0.00 38.41 3.07
342 352 8.999431 TCCAAAGATACTAACTGTTTGAACATC 58.001 33.333 8.91 7.96 38.41 3.06
343 353 8.918202 TCCAAAGATACTAACTGTTTGAACAT 57.082 30.769 8.91 0.00 38.41 2.71
344 354 8.783093 CATCCAAAGATACTAACTGTTTGAACA 58.217 33.333 8.91 0.00 37.37 3.18
345 355 7.750903 GCATCCAAAGATACTAACTGTTTGAAC 59.249 37.037 8.91 0.75 31.10 3.18
346 356 7.665559 AGCATCCAAAGATACTAACTGTTTGAA 59.334 33.333 8.91 0.00 31.10 2.69
347 357 7.168219 AGCATCCAAAGATACTAACTGTTTGA 58.832 34.615 8.91 0.00 31.10 2.69
348 358 7.383102 AGCATCCAAAGATACTAACTGTTTG 57.617 36.000 0.00 0.00 0.00 2.93
349 359 7.148407 CGAAGCATCCAAAGATACTAACTGTTT 60.148 37.037 0.00 0.00 0.00 2.83
350 360 6.313905 CGAAGCATCCAAAGATACTAACTGTT 59.686 38.462 0.00 0.00 0.00 3.16
351 361 5.812642 CGAAGCATCCAAAGATACTAACTGT 59.187 40.000 0.00 0.00 0.00 3.55
352 362 5.812642 ACGAAGCATCCAAAGATACTAACTG 59.187 40.000 0.00 0.00 0.00 3.16
354 364 6.663944 AACGAAGCATCCAAAGATACTAAC 57.336 37.500 0.00 0.00 0.00 2.34
355 365 8.958119 AATAACGAAGCATCCAAAGATACTAA 57.042 30.769 0.00 0.00 0.00 2.24
357 367 8.993121 CATAATAACGAAGCATCCAAAGATACT 58.007 33.333 0.00 0.00 0.00 2.12
361 372 6.821160 TGACATAATAACGAAGCATCCAAAGA 59.179 34.615 0.00 0.00 0.00 2.52
366 377 4.084537 CGGTGACATAATAACGAAGCATCC 60.085 45.833 0.00 0.00 0.00 3.51
399 410 1.683629 GCATGAACCCCAATAACCCGA 60.684 52.381 0.00 0.00 0.00 5.14
401 412 1.119684 GGCATGAACCCCAATAACCC 58.880 55.000 0.00 0.00 0.00 4.11
402 413 0.744281 CGGCATGAACCCCAATAACC 59.256 55.000 0.00 0.00 0.00 2.85
405 416 0.329931 ACACGGCATGAACCCCAATA 59.670 50.000 0.00 0.00 0.00 1.90
406 417 0.965363 GACACGGCATGAACCCCAAT 60.965 55.000 0.00 0.00 0.00 3.16
407 418 1.602323 GACACGGCATGAACCCCAA 60.602 57.895 0.00 0.00 0.00 4.12
408 419 2.033448 GACACGGCATGAACCCCA 59.967 61.111 0.00 0.00 0.00 4.96
409 420 2.033448 TGACACGGCATGAACCCC 59.967 61.111 0.00 0.00 0.00 4.95
436 452 2.670592 GTTACACGCCACCCACCC 60.671 66.667 0.00 0.00 0.00 4.61
438 454 2.111460 TGGTTACACGCCACCCAC 59.889 61.111 0.00 0.00 31.24 4.61
471 491 0.179089 GCAGACGATCAGGACATGCT 60.179 55.000 0.00 0.00 0.00 3.79
519 541 3.626930 ACTGCCAAAACACCAAACTAGA 58.373 40.909 0.00 0.00 0.00 2.43
530 552 4.156182 GCGTGTTTATCTACTGCCAAAAC 58.844 43.478 0.00 0.00 0.00 2.43
542 564 0.247695 GGAGCGCTTGCGTGTTTATC 60.248 55.000 13.26 0.00 45.69 1.75
551 581 1.671054 TAACCAGTGGAGCGCTTGC 60.671 57.895 18.40 4.89 39.58 4.01
553 583 0.107831 TTGTAACCAGTGGAGCGCTT 59.892 50.000 18.40 1.09 0.00 4.68
555 585 0.602905 AGTTGTAACCAGTGGAGCGC 60.603 55.000 18.40 0.00 0.00 5.92
556 586 1.878953 AAGTTGTAACCAGTGGAGCG 58.121 50.000 18.40 0.00 0.00 5.03
558 588 5.465724 GTCTTGTAAGTTGTAACCAGTGGAG 59.534 44.000 18.40 0.00 0.00 3.86
560 590 4.210537 CGTCTTGTAAGTTGTAACCAGTGG 59.789 45.833 7.91 7.91 0.00 4.00
561 591 4.807304 ACGTCTTGTAAGTTGTAACCAGTG 59.193 41.667 0.00 0.00 0.00 3.66
562 592 5.014808 ACGTCTTGTAAGTTGTAACCAGT 57.985 39.130 0.00 0.00 0.00 4.00
563 593 6.864685 TGATACGTCTTGTAAGTTGTAACCAG 59.135 38.462 0.00 0.00 36.44 4.00
583 613 4.864806 CGACCATATACAGCCACATGATAC 59.135 45.833 0.00 0.00 0.00 2.24
584 614 4.081697 CCGACCATATACAGCCACATGATA 60.082 45.833 0.00 0.00 0.00 2.15
585 615 3.306989 CCGACCATATACAGCCACATGAT 60.307 47.826 0.00 0.00 0.00 2.45
586 616 2.037121 CCGACCATATACAGCCACATGA 59.963 50.000 0.00 0.00 0.00 3.07
614 644 5.390885 GCAGCCAACATATATAACATCACGG 60.391 44.000 0.00 0.00 0.00 4.94
622 652 4.097551 TGCCAGCAGCCAACATATATAA 57.902 40.909 0.00 0.00 42.71 0.98
631 661 0.602562 GTATGTTTGCCAGCAGCCAA 59.397 50.000 0.00 0.00 42.71 4.52
633 663 0.819582 ATGTATGTTTGCCAGCAGCC 59.180 50.000 0.00 0.00 42.71 4.85
653 683 8.996651 TCAGAGAAGTCTCCATTATGTATGTA 57.003 34.615 4.67 0.00 43.88 2.29
655 685 9.421806 GATTCAGAGAAGTCTCCATTATGTATG 57.578 37.037 4.67 0.00 43.88 2.39
656 686 9.378504 AGATTCAGAGAAGTCTCCATTATGTAT 57.621 33.333 4.67 0.00 43.88 2.29
657 687 8.637099 CAGATTCAGAGAAGTCTCCATTATGTA 58.363 37.037 4.67 0.00 43.88 2.29
659 689 7.724287 TCAGATTCAGAGAAGTCTCCATTATG 58.276 38.462 4.67 0.00 43.88 1.90
660 690 7.911130 TCAGATTCAGAGAAGTCTCCATTAT 57.089 36.000 4.67 0.00 43.88 1.28
663 693 5.898397 TCATCAGATTCAGAGAAGTCTCCAT 59.102 40.000 4.67 0.00 43.88 3.41
664 694 5.267587 TCATCAGATTCAGAGAAGTCTCCA 58.732 41.667 4.67 0.00 43.88 3.86
665 695 5.850557 TCATCAGATTCAGAGAAGTCTCC 57.149 43.478 4.67 0.00 43.88 3.71
667 697 5.898397 TCCATCATCAGATTCAGAGAAGTCT 59.102 40.000 0.00 0.00 30.20 3.24
668 698 6.159299 TCCATCATCAGATTCAGAGAAGTC 57.841 41.667 0.00 0.00 30.20 3.01
670 700 6.702723 GTCTTCCATCATCAGATTCAGAGAAG 59.297 42.308 0.00 0.00 30.20 2.85
671 701 6.580788 GTCTTCCATCATCAGATTCAGAGAA 58.419 40.000 0.00 0.00 30.20 2.87
673 703 4.983538 CGTCTTCCATCATCAGATTCAGAG 59.016 45.833 0.00 0.00 30.20 3.35
675 705 4.941657 TCGTCTTCCATCATCAGATTCAG 58.058 43.478 0.00 0.00 30.20 3.02
677 707 4.942852 ACTCGTCTTCCATCATCAGATTC 58.057 43.478 0.00 0.00 30.20 2.52
679 709 5.350504 AAACTCGTCTTCCATCATCAGAT 57.649 39.130 0.00 0.00 33.87 2.90
683 713 6.743172 GCTTTTAAAACTCGTCTTCCATCATC 59.257 38.462 0.00 0.00 0.00 2.92
684 714 6.206634 TGCTTTTAAAACTCGTCTTCCATCAT 59.793 34.615 0.00 0.00 0.00 2.45
685 715 5.529430 TGCTTTTAAAACTCGTCTTCCATCA 59.471 36.000 0.00 0.00 0.00 3.07
686 716 5.997385 TGCTTTTAAAACTCGTCTTCCATC 58.003 37.500 0.00 0.00 0.00 3.51
687 717 6.575162 ATGCTTTTAAAACTCGTCTTCCAT 57.425 33.333 0.00 0.00 0.00 3.41
695 883 6.454186 GCATTTGCCTATGCTTTTAAAACTCG 60.454 38.462 11.64 0.00 45.80 4.18
714 902 2.532531 GTGGTCACGAGATGCATTTG 57.467 50.000 0.00 0.00 0.00 2.32
770 976 0.170339 GTGATTGGCAACCTTACCGC 59.830 55.000 0.00 0.00 0.00 5.68
831 1054 7.436118 TCAAATCATCAAAAGGAACAAGGAAG 58.564 34.615 0.00 0.00 0.00 3.46
833 1056 6.975196 TCAAATCATCAAAAGGAACAAGGA 57.025 33.333 0.00 0.00 0.00 3.36
837 1060 6.720748 TCTGGATCAAATCATCAAAAGGAACA 59.279 34.615 0.00 0.00 0.00 3.18
838 1072 7.094032 ACTCTGGATCAAATCATCAAAAGGAAC 60.094 37.037 0.00 0.00 0.00 3.62
850 1084 6.132791 TCGTGTACTACTCTGGATCAAATC 57.867 41.667 0.00 0.00 0.00 2.17
851 1085 5.067936 CCTCGTGTACTACTCTGGATCAAAT 59.932 44.000 0.00 0.00 0.00 2.32
852 1086 4.398358 CCTCGTGTACTACTCTGGATCAAA 59.602 45.833 0.00 0.00 0.00 2.69
853 1087 3.945921 CCTCGTGTACTACTCTGGATCAA 59.054 47.826 0.00 0.00 0.00 2.57
854 1088 3.199289 TCCTCGTGTACTACTCTGGATCA 59.801 47.826 0.00 0.00 0.00 2.92
855 1089 3.806380 TCCTCGTGTACTACTCTGGATC 58.194 50.000 0.00 0.00 0.00 3.36
856 1090 3.455177 TCTCCTCGTGTACTACTCTGGAT 59.545 47.826 0.00 0.00 0.00 3.41
857 1091 2.836372 TCTCCTCGTGTACTACTCTGGA 59.164 50.000 0.00 0.00 0.00 3.86
858 1092 3.263489 TCTCCTCGTGTACTACTCTGG 57.737 52.381 0.00 0.00 0.00 3.86
859 1093 4.505808 TCTTCTCCTCGTGTACTACTCTG 58.494 47.826 0.00 0.00 0.00 3.35
860 1094 4.822685 TCTTCTCCTCGTGTACTACTCT 57.177 45.455 0.00 0.00 0.00 3.24
865 1099 2.502295 ACGTTCTTCTCCTCGTGTACT 58.498 47.619 0.00 0.00 35.24 2.73
872 1106 2.029290 TGCAACCTACGTTCTTCTCCTC 60.029 50.000 0.00 0.00 0.00 3.71
874 1108 2.067013 GTGCAACCTACGTTCTTCTCC 58.933 52.381 0.00 0.00 0.00 3.71
888 1122 4.495844 GCGAATTTATAGGTCAGGTGCAAC 60.496 45.833 0.00 0.00 0.00 4.17
889 1123 3.625764 GCGAATTTATAGGTCAGGTGCAA 59.374 43.478 0.00 0.00 0.00 4.08
892 1126 3.245284 CGTGCGAATTTATAGGTCAGGTG 59.755 47.826 0.00 0.00 0.00 4.00
898 1143 1.589803 GGGCGTGCGAATTTATAGGT 58.410 50.000 0.00 0.00 0.00 3.08
916 1161 1.674519 GCTTAAAAATGCCGTTGGGGG 60.675 52.381 0.00 0.00 35.78 5.40
931 1176 5.646360 GCTACTCCTGTGGTTAAATGCTTAA 59.354 40.000 0.00 0.00 0.00 1.85
932 1177 5.045869 AGCTACTCCTGTGGTTAAATGCTTA 60.046 40.000 0.00 0.00 0.00 3.09
933 1178 4.010349 GCTACTCCTGTGGTTAAATGCTT 58.990 43.478 0.00 0.00 0.00 3.91
934 1179 3.264450 AGCTACTCCTGTGGTTAAATGCT 59.736 43.478 0.00 0.00 0.00 3.79
935 1180 3.375299 CAGCTACTCCTGTGGTTAAATGC 59.625 47.826 0.00 0.00 0.00 3.56
936 1181 3.941483 CCAGCTACTCCTGTGGTTAAATG 59.059 47.826 0.00 0.00 0.00 2.32
937 1182 3.622455 GCCAGCTACTCCTGTGGTTAAAT 60.622 47.826 0.00 0.00 32.20 1.40
938 1183 2.290071 GCCAGCTACTCCTGTGGTTAAA 60.290 50.000 0.00 0.00 32.20 1.52
939 1184 1.278127 GCCAGCTACTCCTGTGGTTAA 59.722 52.381 0.00 0.00 32.20 2.01
940 1185 0.902531 GCCAGCTACTCCTGTGGTTA 59.097 55.000 0.00 0.00 32.20 2.85
947 1192 2.284921 TGCCTGCCAGCTACTCCT 60.285 61.111 0.00 0.00 0.00 3.69
948 1193 2.124942 GTGCCTGCCAGCTACTCC 60.125 66.667 0.00 0.00 0.00 3.85
955 1208 0.749454 GGTTATGGAGTGCCTGCCAG 60.749 60.000 0.00 0.00 37.64 4.85
956 1209 1.302949 GGTTATGGAGTGCCTGCCA 59.697 57.895 0.00 0.00 38.78 4.92
957 1210 0.749454 CTGGTTATGGAGTGCCTGCC 60.749 60.000 0.00 0.00 34.31 4.85
958 1211 1.379642 GCTGGTTATGGAGTGCCTGC 61.380 60.000 0.00 0.00 38.42 4.85
959 1212 1.091771 CGCTGGTTATGGAGTGCCTG 61.092 60.000 0.00 0.00 34.31 4.85
960 1213 1.221840 CGCTGGTTATGGAGTGCCT 59.778 57.895 0.00 0.00 34.31 4.75
961 1214 0.392461 TTCGCTGGTTATGGAGTGCC 60.392 55.000 0.00 0.00 0.00 5.01
963 1216 2.009774 CCTTTCGCTGGTTATGGAGTG 58.990 52.381 0.00 0.00 0.00 3.51
964 1217 1.906574 TCCTTTCGCTGGTTATGGAGT 59.093 47.619 0.00 0.00 0.00 3.85
966 1219 1.406887 GCTCCTTTCGCTGGTTATGGA 60.407 52.381 0.00 0.00 0.00 3.41
967 1220 1.017387 GCTCCTTTCGCTGGTTATGG 58.983 55.000 0.00 0.00 0.00 2.74
968 1221 1.737838 TGCTCCTTTCGCTGGTTATG 58.262 50.000 0.00 0.00 0.00 1.90
969 1222 2.359900 CTTGCTCCTTTCGCTGGTTAT 58.640 47.619 0.00 0.00 0.00 1.89
980 1233 1.111116 TGCTTGCTTGCTTGCTCCTT 61.111 50.000 10.35 0.00 0.00 3.36
982 1235 0.037605 ATTGCTTGCTTGCTTGCTCC 60.038 50.000 10.35 0.00 0.00 4.70
983 1236 1.068474 CATTGCTTGCTTGCTTGCTC 58.932 50.000 10.35 0.00 0.00 4.26
1006 1259 2.125961 GGACGTATGAGGAGGCCGT 61.126 63.158 0.00 0.00 0.00 5.68
1086 1348 0.107017 CAGGGCAGAATGTACCAGGG 60.107 60.000 0.00 0.00 39.31 4.45
1091 1353 0.912486 AGGTCCAGGGCAGAATGTAC 59.088 55.000 0.00 0.00 39.31 2.90
1093 1355 0.912486 GTAGGTCCAGGGCAGAATGT 59.088 55.000 0.00 0.00 39.31 2.71
1119 1381 1.173913 GATTTGGTGTAGGTGTGGGC 58.826 55.000 0.00 0.00 0.00 5.36
1143 1405 3.702048 GGTGCAGGTGTAGCGGGA 61.702 66.667 0.00 0.00 33.85 5.14
1148 1410 2.045926 GGGCAGGTGCAGGTGTAG 60.046 66.667 4.01 0.00 44.36 2.74
1189 1464 0.912486 GGAGCAGGTGGAGGTGTAAT 59.088 55.000 0.00 0.00 0.00 1.89
1236 1598 2.046009 TAGAACCGTTGGTGCTGCCA 62.046 55.000 6.74 0.00 42.53 4.92
1347 1733 4.555709 AACGGCGGCAGGTTCACA 62.556 61.111 13.24 0.00 0.00 3.58
1395 1781 1.543429 CCCTTGCCGTCTTTGAAGAGT 60.543 52.381 0.00 0.00 35.32 3.24
1450 1840 4.083271 GGCACTCTGTCAATCAACTAAACC 60.083 45.833 0.00 0.00 0.00 3.27
1478 1894 0.320421 TCAGTTTGGAGGCGTACTGC 60.320 55.000 2.81 1.72 45.38 4.40
1479 1895 2.002586 CATCAGTTTGGAGGCGTACTG 58.997 52.381 1.46 1.46 39.41 2.74
1480 1896 1.676014 GCATCAGTTTGGAGGCGTACT 60.676 52.381 0.00 0.00 34.70 2.73
1483 1899 0.322816 ATGCATCAGTTTGGAGGCGT 60.323 50.000 0.00 0.00 46.85 5.68
1485 1901 1.820519 TCAATGCATCAGTTTGGAGGC 59.179 47.619 0.00 0.00 44.34 4.70
1486 1902 3.952323 AGATCAATGCATCAGTTTGGAGG 59.048 43.478 0.00 0.00 0.00 4.30
1610 2252 1.523032 GGTCGAAATGGTAGCGGGG 60.523 63.158 0.00 0.00 0.00 5.73
1621 2263 2.357034 GTGCCGCTGAGGTCGAAA 60.357 61.111 0.00 0.00 43.70 3.46
1744 2386 1.338107 TCTCCACATGGAACGTCAGT 58.662 50.000 1.50 0.00 44.91 3.41
1745 2387 2.341257 CTTCTCCACATGGAACGTCAG 58.659 52.381 1.50 0.00 44.91 3.51
1756 2398 1.477685 GGTTCGACCCCTTCTCCACA 61.478 60.000 0.00 0.00 30.04 4.17
1863 2525 0.256752 CCTCATTGGTCTCCATGCCA 59.743 55.000 0.00 0.00 31.53 4.92
1867 2529 2.105477 CGATTCCCTCATTGGTCTCCAT 59.895 50.000 0.00 0.00 31.53 3.41
1873 2535 0.255890 CCCACGATTCCCTCATTGGT 59.744 55.000 0.00 0.00 0.00 3.67
1885 2547 2.446848 CCAGATGGAGCCCCACGAT 61.447 63.158 0.00 0.00 46.98 3.73
2058 3228 2.168496 CATGCCTTCCATGGATCATCC 58.832 52.381 17.06 0.00 46.09 3.51
2116 3296 2.093310 CACAAGCAACGTCTCAGCTATG 59.907 50.000 5.39 8.23 37.70 2.23
2130 3316 1.887242 GCACAGGACGTCACAAGCA 60.887 57.895 18.91 0.00 0.00 3.91
2144 3330 3.588906 ACGACGAGGACACGCACA 61.589 61.111 0.00 0.00 36.70 4.57
2164 3360 5.022122 GGACAAAGGGAGTAAGTAGGTAGT 58.978 45.833 0.00 0.00 0.00 2.73
2173 3369 6.117975 AGTATTTTCGGACAAAGGGAGTAA 57.882 37.500 0.00 0.00 0.00 2.24
2178 3374 4.517453 TGACAAGTATTTTCGGACAAAGGG 59.483 41.667 0.00 0.00 0.00 3.95
2179 3375 5.682943 TGACAAGTATTTTCGGACAAAGG 57.317 39.130 0.00 0.00 0.00 3.11
2180 3376 6.898041 TGATGACAAGTATTTTCGGACAAAG 58.102 36.000 0.00 0.00 0.00 2.77
2181 3377 6.869315 TGATGACAAGTATTTTCGGACAAA 57.131 33.333 0.00 0.00 0.00 2.83
2182 3378 6.869315 TTGATGACAAGTATTTTCGGACAA 57.131 33.333 0.00 0.00 0.00 3.18
2183 3379 6.869315 TTTGATGACAAGTATTTTCGGACA 57.131 33.333 0.00 0.00 37.32 4.02
2184 3380 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
2185 3381 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2186 3382 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
2187 3383 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
2229 3425 9.976511 TCTCTTCGTACGGAAATATTTATCATT 57.023 29.630 16.52 0.00 33.34 2.57
2230 3426 9.627395 CTCTCTTCGTACGGAAATATTTATCAT 57.373 33.333 16.52 0.00 33.34 2.45
2231 3427 8.627403 ACTCTCTTCGTACGGAAATATTTATCA 58.373 33.333 16.52 0.00 33.34 2.15
2233 3429 9.890352 GTACTCTCTTCGTACGGAAATATTTAT 57.110 33.333 16.52 0.00 33.34 1.40
2245 3441 6.580963 TGATAACTCGTACTCTCTTCGTAC 57.419 41.667 0.00 0.00 35.15 3.67
2246 3442 7.783090 AATGATAACTCGTACTCTCTTCGTA 57.217 36.000 0.00 0.00 0.00 3.43
2247 3443 6.680874 AATGATAACTCGTACTCTCTTCGT 57.319 37.500 0.00 0.00 0.00 3.85
2248 3444 9.320406 GATAAATGATAACTCGTACTCTCTTCG 57.680 37.037 0.00 0.00 0.00 3.79
2249 3445 9.320406 CGATAAATGATAACTCGTACTCTCTTC 57.680 37.037 0.00 0.00 0.00 2.87
2250 3446 7.804129 GCGATAAATGATAACTCGTACTCTCTT 59.196 37.037 0.00 0.00 0.00 2.85
2251 3447 7.299586 GCGATAAATGATAACTCGTACTCTCT 58.700 38.462 0.00 0.00 0.00 3.10
2252 3448 6.246748 CGCGATAAATGATAACTCGTACTCTC 59.753 42.308 0.00 0.00 0.00 3.20
2253 3449 6.078479 CGCGATAAATGATAACTCGTACTCT 58.922 40.000 0.00 0.00 0.00 3.24
2254 3450 5.850128 ACGCGATAAATGATAACTCGTACTC 59.150 40.000 15.93 0.00 0.00 2.59
2255 3451 5.755813 ACGCGATAAATGATAACTCGTACT 58.244 37.500 15.93 0.00 0.00 2.73
2400 7789 5.757808 CAGAAAAATTGACCGACCCAAATTT 59.242 36.000 0.00 0.00 30.50 1.82
2405 7794 2.235016 CCAGAAAAATTGACCGACCCA 58.765 47.619 0.00 0.00 0.00 4.51
2411 7800 4.270245 TCATTGGCCAGAAAAATTGACC 57.730 40.909 5.11 0.00 0.00 4.02
2415 7804 5.048573 GCAACAATCATTGGCCAGAAAAATT 60.049 36.000 5.11 0.21 34.12 1.82
2429 7819 5.396484 CACGATTCTTGAAGCAACAATCAT 58.604 37.500 8.25 0.00 31.46 2.45
2463 7853 9.447157 AAAAATTTCTCCAAATGAAAACAGACA 57.553 25.926 0.00 0.00 37.05 3.41
2473 7863 7.515643 GCATCAGACAAAAATTTCTCCAAATG 58.484 34.615 0.00 0.00 32.18 2.32
2474 7864 6.366877 CGCATCAGACAAAAATTTCTCCAAAT 59.633 34.615 0.00 0.00 33.27 2.32
2478 7868 4.618489 CACGCATCAGACAAAAATTTCTCC 59.382 41.667 0.00 0.00 0.00 3.71
2495 7885 3.057596 CCAAAACAAGACATACCACGCAT 60.058 43.478 0.00 0.00 0.00 4.73
2498 7888 2.351350 GCCCAAAACAAGACATACCACG 60.351 50.000 0.00 0.00 0.00 4.94
2515 7905 4.079253 GTCAGTCAAAAATTCCTAGCCCA 58.921 43.478 0.00 0.00 0.00 5.36
2546 7936 2.307686 GTGGAGGAATTGACTAACCCCA 59.692 50.000 0.00 0.00 0.00 4.96
2552 7942 0.539986 GCCCGTGGAGGAATTGACTA 59.460 55.000 0.00 0.00 45.00 2.59
2647 8042 2.034879 CATTCGGCCAGTTGAGCGT 61.035 57.895 2.24 0.00 0.00 5.07
2660 8055 4.629634 TGTGTTGTATAGTGAAGGCATTCG 59.370 41.667 6.62 0.00 38.34 3.34
2664 8059 4.905429 ACATGTGTTGTATAGTGAAGGCA 58.095 39.130 0.00 0.00 36.57 4.75
2666 8061 5.734720 AGGACATGTGTTGTATAGTGAAGG 58.265 41.667 1.15 0.00 39.18 3.46
2709 8104 6.168270 TGTTTCAAAAATTAAGGGAGGTGG 57.832 37.500 0.00 0.00 0.00 4.61
2725 8120 0.741915 GGAGTTGGGCGTTGTTTCAA 59.258 50.000 0.00 0.00 0.00 2.69
2726 8121 0.394488 TGGAGTTGGGCGTTGTTTCA 60.394 50.000 0.00 0.00 0.00 2.69
2763 8158 3.812053 GTGAGAGAGAGAGAGATGAGAGC 59.188 52.174 0.00 0.00 0.00 4.09
2769 8164 6.097270 CCAATCTTTGTGAGAGAGAGAGAGAT 59.903 42.308 0.00 0.00 37.93 2.75
2783 8178 1.080569 GCCCACGCCAATCTTTGTG 60.081 57.895 0.00 0.00 0.00 3.33
2821 8216 2.126618 TTCCTGCACGAGTACGCG 60.127 61.111 17.76 17.76 43.96 6.01
2826 8221 1.078848 GGCATCTTCCTGCACGAGT 60.079 57.895 0.00 0.00 44.12 4.18
2857 8252 0.976073 TCTTCCTCCCATCCACCGAC 60.976 60.000 0.00 0.00 0.00 4.79
2860 8255 1.566231 ACAATCTTCCTCCCATCCACC 59.434 52.381 0.00 0.00 0.00 4.61
2872 8267 2.483877 TGTCGTTCATGCCACAATCTTC 59.516 45.455 0.00 0.00 0.00 2.87
2877 8272 1.840630 CGCTGTCGTTCATGCCACAA 61.841 55.000 0.00 0.00 0.00 3.33
2885 8280 3.691342 CTCCCCCGCTGTCGTTCA 61.691 66.667 0.00 0.00 0.00 3.18
2918 8315 1.078637 GTTAGGCCTTCCACCGTCC 60.079 63.158 12.58 0.00 33.74 4.79
2919 8316 0.672711 GTGTTAGGCCTTCCACCGTC 60.673 60.000 12.58 0.00 33.74 4.79
2920 8317 1.125711 AGTGTTAGGCCTTCCACCGT 61.126 55.000 23.60 9.62 33.74 4.83
2921 8318 0.036306 AAGTGTTAGGCCTTCCACCG 59.964 55.000 23.60 0.00 33.74 4.94
2926 8323 1.813178 GCAAGGAAGTGTTAGGCCTTC 59.187 52.381 12.58 5.51 38.63 3.46
2983 8380 3.853330 CTCCGATGCACAACGCGG 61.853 66.667 12.47 0.00 46.97 6.46
2984 8381 3.071459 GACTCCGATGCACAACGCG 62.071 63.158 3.53 3.53 46.97 6.01
3011 8408 3.785859 CTGCCCTCCAGCGCCTTA 61.786 66.667 2.29 0.00 34.21 2.69
3017 8414 0.811616 CGACAATACTGCCCTCCAGC 60.812 60.000 0.00 0.00 45.78 4.85
3023 8420 0.527817 CTCCGACGACAATACTGCCC 60.528 60.000 0.00 0.00 0.00 5.36
3027 8424 2.163815 CACCTTCTCCGACGACAATACT 59.836 50.000 0.00 0.00 0.00 2.12
3030 8427 1.254026 TCACCTTCTCCGACGACAAT 58.746 50.000 0.00 0.00 0.00 2.71
3032 8429 2.957060 ATCACCTTCTCCGACGACA 58.043 52.632 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.