Multiple sequence alignment - TraesCS3A01G479300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G479300 chr3A 100.000 2525 0 0 1 2525 711039605 711042129 0.000000e+00 4663.0
1 TraesCS3A01G479300 chr3A 85.481 489 69 2 2035 2522 710937574 710938061 2.240000e-140 508.0
2 TraesCS3A01G479300 chr3A 85.366 492 70 2 2035 2525 711057992 711058482 2.240000e-140 508.0
3 TraesCS3A01G479300 chr3A 95.956 272 11 0 81 352 734111793 734112064 2.310000e-120 442.0
4 TraesCS3A01G479300 chr3A 82.186 494 82 6 2035 2525 747573371 747572881 1.080000e-113 420.0
5 TraesCS3A01G479300 chr3A 81.762 488 86 1 2035 2522 710838290 710838774 3.020000e-109 405.0
6 TraesCS3A01G479300 chr3A 100.000 81 0 0 3 83 2118490 2118570 1.560000e-32 150.0
7 TraesCS3A01G479300 chr3A 100.000 81 0 0 3 83 2585540 2585620 1.560000e-32 150.0
8 TraesCS3A01G479300 chr3A 100.000 81 0 0 3 83 4108300 4108380 1.560000e-32 150.0
9 TraesCS3A01G479300 chr3A 100.000 81 0 0 3 83 5110738 5110818 1.560000e-32 150.0
10 TraesCS3A01G479300 chr3A 98.765 81 1 0 3 83 3055486 3055566 7.280000e-31 145.0
11 TraesCS3A01G479300 chr3A 98.765 81 1 0 3 83 5633894 5633974 7.280000e-31 145.0
12 TraesCS3A01G479300 chr3B 95.500 1911 80 4 619 2525 765587776 765589684 0.000000e+00 3048.0
13 TraesCS3A01G479300 chr3B 85.425 494 65 6 2031 2522 765658379 765658867 8.060000e-140 507.0
14 TraesCS3A01G479300 chr3B 84.413 494 70 6 2031 2522 765623630 765624118 1.760000e-131 479.0
15 TraesCS3A01G479300 chr3B 82.178 505 85 5 2023 2525 765711169 765711670 1.790000e-116 429.0
16 TraesCS3A01G479300 chr3B 82.377 488 82 3 2035 2522 765549242 765549725 3.000000e-114 422.0
17 TraesCS3A01G479300 chr3B 90.706 269 18 3 349 615 765587365 765587628 4.000000e-93 351.0
18 TraesCS3A01G479300 chr3D 81.010 832 156 2 1000 1830 574771239 574770409 0.000000e+00 660.0
19 TraesCS3A01G479300 chr3D 81.010 832 156 2 1000 1830 575486938 575487768 0.000000e+00 660.0
20 TraesCS3A01G479300 chr3D 82.828 495 83 2 2029 2522 575479969 575480462 2.310000e-120 442.0
21 TraesCS3A01G479300 chr3D 81.875 160 21 8 1586 1741 7166065 7166220 7.330000e-26 128.0
22 TraesCS3A01G479300 chr3D 100.000 30 0 0 2496 2525 131026401 131026372 3.510000e-04 56.5
23 TraesCS3A01G479300 chr3D 100.000 30 0 0 2496 2525 131031337 131031308 3.510000e-04 56.5
24 TraesCS3A01G479300 chr3D 100.000 30 0 0 2496 2525 131033769 131033740 3.510000e-04 56.5
25 TraesCS3A01G479300 chr7A 97.026 269 8 0 81 349 18674514 18674782 1.060000e-123 453.0
26 TraesCS3A01G479300 chr7A 94.624 279 13 2 81 357 96088685 96088407 4.990000e-117 431.0
27 TraesCS3A01G479300 chr7A 100.000 79 0 0 3 81 3075869 3075947 2.020000e-31 147.0
28 TraesCS3A01G479300 chr7A 72.135 445 115 9 1391 1829 2674860 2675301 2.640000e-25 126.0
29 TraesCS3A01G479300 chr2A 95.956 272 11 0 81 352 714001161 714000890 2.310000e-120 442.0
30 TraesCS3A01G479300 chr2A 94.505 91 3 2 1 91 773246865 773246953 3.390000e-29 139.0
31 TraesCS3A01G479300 chr1A 96.283 269 10 0 81 349 568759082 568759350 2.310000e-120 442.0
32 TraesCS3A01G479300 chr6A 96.269 268 10 0 81 348 9472729 9472996 8.290000e-120 440.0
33 TraesCS3A01G479300 chr6A 100.000 80 0 0 3 82 15221520 15221599 5.630000e-32 148.0
34 TraesCS3A01G479300 chr5A 96.283 269 9 1 81 349 430041033 430041300 8.290000e-120 440.0
35 TraesCS3A01G479300 chr2B 96.283 269 8 2 81 349 773459838 773459572 8.290000e-120 440.0
36 TraesCS3A01G479300 chr1B 94.014 284 15 1 67 350 11639579 11639860 1.790000e-116 429.0
37 TraesCS3A01G479300 chr7D 89.333 75 8 0 1613 1687 4009956 4009882 7.440000e-16 95.3
38 TraesCS3A01G479300 chr4A 86.905 84 11 0 1598 1681 740494368 740494451 7.440000e-16 95.3
39 TraesCS3A01G479300 chr4A 86.957 69 9 0 1613 1681 742160471 742160403 7.490000e-11 78.7
40 TraesCS3A01G479300 chr1D 83.673 98 16 0 1589 1686 464794084 464794181 2.670000e-15 93.5
41 TraesCS3A01G479300 chr7B 94.545 55 3 0 1596 1650 747186497 747186551 4.480000e-13 86.1
42 TraesCS3A01G479300 chrUn 96.970 33 1 0 2493 2525 275792062 275792094 3.510000e-04 56.5
43 TraesCS3A01G479300 chrUn 100.000 29 0 0 2497 2525 275797946 275797974 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G479300 chr3A 711039605 711042129 2524 False 4663.0 4663 100.000 1 2525 1 chr3A.!!$F9 2524
1 TraesCS3A01G479300 chr3B 765587365 765589684 2319 False 1699.5 3048 93.103 349 2525 2 chr3B.!!$F5 2176
2 TraesCS3A01G479300 chr3B 765711169 765711670 501 False 429.0 429 82.178 2023 2525 1 chr3B.!!$F4 502
3 TraesCS3A01G479300 chr3D 574770409 574771239 830 True 660.0 660 81.010 1000 1830 1 chr3D.!!$R2 830
4 TraesCS3A01G479300 chr3D 575486938 575487768 830 False 660.0 660 81.010 1000 1830 1 chr3D.!!$F3 830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.180171 TGGGACTAATCATGCGGTGG 59.82 55.0 0.0 0.0 0.0 4.61 F
276 277 0.180406 GGGACTAATCATGCGGTGGT 59.82 55.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1263 1413 0.252696 TGGTAGGCTCACCACCATCT 60.253 55.0 2.71 0.0 43.76 2.9 R
1590 1740 1.323412 TCCCACCAAATCCAACAACG 58.677 50.0 0.00 0.0 0.00 4.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.454371 CTACATTGGTCCCGGTTCTAG 57.546 52.381 0.00 0.00 0.00 2.43
21 22 1.946984 ACATTGGTCCCGGTTCTAGA 58.053 50.000 0.00 0.00 0.00 2.43
22 23 1.553704 ACATTGGTCCCGGTTCTAGAC 59.446 52.381 0.00 0.00 0.00 2.59
23 24 1.831736 CATTGGTCCCGGTTCTAGACT 59.168 52.381 0.00 0.00 0.00 3.24
24 25 1.263356 TTGGTCCCGGTTCTAGACTG 58.737 55.000 0.00 0.00 0.00 3.51
25 26 0.406750 TGGTCCCGGTTCTAGACTGA 59.593 55.000 0.00 0.00 36.72 3.41
26 27 1.203087 TGGTCCCGGTTCTAGACTGAA 60.203 52.381 0.00 0.00 36.72 3.02
27 28 1.204231 GGTCCCGGTTCTAGACTGAAC 59.796 57.143 0.00 8.44 43.88 3.18
33 34 2.651135 GTTCTAGACTGAACCGGGAC 57.349 55.000 6.32 0.00 40.10 4.46
34 35 2.169330 GTTCTAGACTGAACCGGGACT 58.831 52.381 6.32 0.00 40.10 3.85
35 36 3.350833 GTTCTAGACTGAACCGGGACTA 58.649 50.000 6.32 0.00 40.10 2.59
36 37 3.726557 TCTAGACTGAACCGGGACTAA 57.273 47.619 6.32 0.00 0.00 2.24
37 38 4.246712 TCTAGACTGAACCGGGACTAAT 57.753 45.455 6.32 0.00 0.00 1.73
38 39 3.952323 TCTAGACTGAACCGGGACTAATG 59.048 47.826 6.32 0.00 0.00 1.90
39 40 1.831736 AGACTGAACCGGGACTAATGG 59.168 52.381 6.32 0.00 0.00 3.16
40 41 0.909623 ACTGAACCGGGACTAATGGG 59.090 55.000 6.32 0.00 0.00 4.00
41 42 0.463833 CTGAACCGGGACTAATGGGC 60.464 60.000 6.32 0.00 0.00 5.36
42 43 0.912487 TGAACCGGGACTAATGGGCT 60.912 55.000 6.32 0.00 0.00 5.19
43 44 0.463833 GAACCGGGACTAATGGGCTG 60.464 60.000 6.32 0.00 0.00 4.85
44 45 0.912487 AACCGGGACTAATGGGCTGA 60.912 55.000 6.32 0.00 0.00 4.26
45 46 0.694444 ACCGGGACTAATGGGCTGAT 60.694 55.000 6.32 0.00 0.00 2.90
46 47 0.250467 CCGGGACTAATGGGCTGATG 60.250 60.000 0.00 0.00 0.00 3.07
47 48 0.886490 CGGGACTAATGGGCTGATGC 60.886 60.000 0.00 0.00 38.76 3.91
48 49 0.886490 GGGACTAATGGGCTGATGCG 60.886 60.000 0.00 0.00 40.82 4.73
49 50 0.886490 GGACTAATGGGCTGATGCGG 60.886 60.000 0.00 0.00 40.82 5.69
50 51 1.510480 GACTAATGGGCTGATGCGGC 61.510 60.000 0.00 0.00 40.82 6.53
58 59 4.100084 CTGATGCGGCCTGGACCA 62.100 66.667 0.00 0.00 0.00 4.02
59 60 3.410628 TGATGCGGCCTGGACCAT 61.411 61.111 0.00 0.00 0.00 3.55
60 61 2.043604 CTGATGCGGCCTGGACCATA 62.044 60.000 0.00 0.00 0.00 2.74
61 62 1.302033 GATGCGGCCTGGACCATAG 60.302 63.158 0.00 0.00 0.00 2.23
62 63 3.482232 ATGCGGCCTGGACCATAGC 62.482 63.158 0.00 7.91 0.00 2.97
63 64 4.937431 GCGGCCTGGACCATAGCC 62.937 72.222 20.91 20.91 42.18 3.93
64 65 4.256180 CGGCCTGGACCATAGCCC 62.256 72.222 23.49 9.19 42.66 5.19
65 66 2.774351 GGCCTGGACCATAGCCCT 60.774 66.667 20.41 0.00 39.60 5.19
66 67 2.512896 GCCTGGACCATAGCCCTG 59.487 66.667 0.00 0.00 0.00 4.45
67 68 2.378634 GCCTGGACCATAGCCCTGT 61.379 63.158 0.00 0.00 0.00 4.00
68 69 1.926426 GCCTGGACCATAGCCCTGTT 61.926 60.000 0.00 0.00 0.00 3.16
69 70 0.625849 CCTGGACCATAGCCCTGTTT 59.374 55.000 0.00 0.00 0.00 2.83
70 71 1.005924 CCTGGACCATAGCCCTGTTTT 59.994 52.381 0.00 0.00 0.00 2.43
71 72 2.369394 CTGGACCATAGCCCTGTTTTC 58.631 52.381 0.00 0.00 0.00 2.29
72 73 1.992557 TGGACCATAGCCCTGTTTTCT 59.007 47.619 0.00 0.00 0.00 2.52
73 74 3.186283 TGGACCATAGCCCTGTTTTCTA 58.814 45.455 0.00 0.00 0.00 2.10
74 75 3.054655 TGGACCATAGCCCTGTTTTCTAC 60.055 47.826 0.00 0.00 0.00 2.59
75 76 3.200165 GGACCATAGCCCTGTTTTCTACT 59.800 47.826 0.00 0.00 0.00 2.57
76 77 4.407945 GGACCATAGCCCTGTTTTCTACTA 59.592 45.833 0.00 0.00 0.00 1.82
77 78 5.453480 GGACCATAGCCCTGTTTTCTACTAG 60.453 48.000 0.00 0.00 0.00 2.57
78 79 5.030820 ACCATAGCCCTGTTTTCTACTAGT 58.969 41.667 0.00 0.00 0.00 2.57
79 80 5.104900 ACCATAGCCCTGTTTTCTACTAGTG 60.105 44.000 5.39 0.00 0.00 2.74
80 81 5.104900 CCATAGCCCTGTTTTCTACTAGTGT 60.105 44.000 5.39 0.00 0.00 3.55
81 82 4.976540 AGCCCTGTTTTCTACTAGTGTT 57.023 40.909 5.39 0.00 0.00 3.32
82 83 7.364408 CCATAGCCCTGTTTTCTACTAGTGTTA 60.364 40.741 5.39 0.00 0.00 2.41
83 84 6.038997 AGCCCTGTTTTCTACTAGTGTTAG 57.961 41.667 5.39 0.00 0.00 2.34
84 85 5.778750 AGCCCTGTTTTCTACTAGTGTTAGA 59.221 40.000 5.39 0.00 0.00 2.10
85 86 6.440965 AGCCCTGTTTTCTACTAGTGTTAGAT 59.559 38.462 5.39 0.00 0.00 1.98
86 87 6.535508 GCCCTGTTTTCTACTAGTGTTAGATG 59.464 42.308 5.39 0.00 0.00 2.90
87 88 7.612677 CCCTGTTTTCTACTAGTGTTAGATGT 58.387 38.462 5.39 0.00 0.00 3.06
88 89 7.545965 CCCTGTTTTCTACTAGTGTTAGATGTG 59.454 40.741 5.39 0.00 0.00 3.21
89 90 7.063544 CCTGTTTTCTACTAGTGTTAGATGTGC 59.936 40.741 5.39 0.00 0.00 4.57
90 91 6.872020 TGTTTTCTACTAGTGTTAGATGTGCC 59.128 38.462 5.39 0.00 0.00 5.01
91 92 5.593679 TTCTACTAGTGTTAGATGTGCCC 57.406 43.478 5.39 0.00 0.00 5.36
92 93 2.961526 ACTAGTGTTAGATGTGCCCG 57.038 50.000 0.00 0.00 0.00 6.13
93 94 2.176889 ACTAGTGTTAGATGTGCCCGT 58.823 47.619 0.00 0.00 0.00 5.28
94 95 2.094182 ACTAGTGTTAGATGTGCCCGTG 60.094 50.000 0.00 0.00 0.00 4.94
95 96 0.973632 AGTGTTAGATGTGCCCGTGA 59.026 50.000 0.00 0.00 0.00 4.35
96 97 1.555075 AGTGTTAGATGTGCCCGTGAT 59.445 47.619 0.00 0.00 0.00 3.06
97 98 2.027192 AGTGTTAGATGTGCCCGTGATT 60.027 45.455 0.00 0.00 0.00 2.57
98 99 3.196901 AGTGTTAGATGTGCCCGTGATTA 59.803 43.478 0.00 0.00 0.00 1.75
99 100 3.555956 GTGTTAGATGTGCCCGTGATTAG 59.444 47.826 0.00 0.00 0.00 1.73
100 101 3.196901 TGTTAGATGTGCCCGTGATTAGT 59.803 43.478 0.00 0.00 0.00 2.24
101 102 4.189231 GTTAGATGTGCCCGTGATTAGTT 58.811 43.478 0.00 0.00 0.00 2.24
102 103 3.350219 AGATGTGCCCGTGATTAGTTT 57.650 42.857 0.00 0.00 0.00 2.66
103 104 3.270877 AGATGTGCCCGTGATTAGTTTC 58.729 45.455 0.00 0.00 0.00 2.78
104 105 2.851263 TGTGCCCGTGATTAGTTTCT 57.149 45.000 0.00 0.00 0.00 2.52
105 106 3.134574 TGTGCCCGTGATTAGTTTCTT 57.865 42.857 0.00 0.00 0.00 2.52
106 107 4.274602 TGTGCCCGTGATTAGTTTCTTA 57.725 40.909 0.00 0.00 0.00 2.10
107 108 4.643463 TGTGCCCGTGATTAGTTTCTTAA 58.357 39.130 0.00 0.00 0.00 1.85
108 109 5.250200 TGTGCCCGTGATTAGTTTCTTAAT 58.750 37.500 0.00 0.00 0.00 1.40
109 110 6.408035 TGTGCCCGTGATTAGTTTCTTAATA 58.592 36.000 0.00 0.00 0.00 0.98
110 111 7.051623 TGTGCCCGTGATTAGTTTCTTAATAT 58.948 34.615 0.00 0.00 0.00 1.28
111 112 7.011950 TGTGCCCGTGATTAGTTTCTTAATATG 59.988 37.037 0.00 0.00 0.00 1.78
112 113 7.225931 GTGCCCGTGATTAGTTTCTTAATATGA 59.774 37.037 0.00 0.00 0.00 2.15
113 114 7.936847 TGCCCGTGATTAGTTTCTTAATATGAT 59.063 33.333 0.00 0.00 0.00 2.45
114 115 8.230486 GCCCGTGATTAGTTTCTTAATATGATG 58.770 37.037 0.00 0.00 0.00 3.07
115 116 9.273016 CCCGTGATTAGTTTCTTAATATGATGT 57.727 33.333 0.00 0.00 0.00 3.06
121 122 9.832445 ATTAGTTTCTTAATATGATGTGTCCGT 57.168 29.630 0.00 0.00 0.00 4.69
122 123 7.539712 AGTTTCTTAATATGATGTGTCCGTG 57.460 36.000 0.00 0.00 0.00 4.94
123 124 7.327975 AGTTTCTTAATATGATGTGTCCGTGA 58.672 34.615 0.00 0.00 0.00 4.35
124 125 7.987458 AGTTTCTTAATATGATGTGTCCGTGAT 59.013 33.333 0.00 0.00 0.00 3.06
125 126 8.612619 GTTTCTTAATATGATGTGTCCGTGATT 58.387 33.333 0.00 0.00 0.00 2.57
126 127 9.825109 TTTCTTAATATGATGTGTCCGTGATTA 57.175 29.630 0.00 0.00 0.00 1.75
127 128 9.996554 TTCTTAATATGATGTGTCCGTGATTAT 57.003 29.630 0.00 0.00 0.00 1.28
132 133 9.778741 AATATGATGTGTCCGTGATTATAGTTT 57.221 29.630 0.00 0.00 0.00 2.66
133 134 7.715265 ATGATGTGTCCGTGATTATAGTTTC 57.285 36.000 0.00 0.00 0.00 2.78
134 135 6.046593 TGATGTGTCCGTGATTATAGTTTCC 58.953 40.000 0.00 0.00 0.00 3.13
135 136 5.670792 TGTGTCCGTGATTATAGTTTCCT 57.329 39.130 0.00 0.00 0.00 3.36
136 137 6.778834 TGTGTCCGTGATTATAGTTTCCTA 57.221 37.500 0.00 0.00 0.00 2.94
137 138 7.172868 TGTGTCCGTGATTATAGTTTCCTAA 57.827 36.000 0.00 0.00 0.00 2.69
138 139 7.788026 TGTGTCCGTGATTATAGTTTCCTAAT 58.212 34.615 0.00 0.00 0.00 1.73
139 140 7.924412 TGTGTCCGTGATTATAGTTTCCTAATC 59.076 37.037 0.00 0.00 35.72 1.75
140 141 7.114529 GTGTCCGTGATTATAGTTTCCTAATCG 59.885 40.741 0.00 0.00 37.22 3.34
141 142 7.013559 TGTCCGTGATTATAGTTTCCTAATCGA 59.986 37.037 0.00 0.00 37.22 3.59
142 143 7.325579 GTCCGTGATTATAGTTTCCTAATCGAC 59.674 40.741 0.00 0.00 37.22 4.20
143 144 6.585322 CCGTGATTATAGTTTCCTAATCGACC 59.415 42.308 0.00 0.00 37.22 4.79
144 145 7.143340 CGTGATTATAGTTTCCTAATCGACCA 58.857 38.462 0.00 0.00 37.22 4.02
145 146 7.326305 CGTGATTATAGTTTCCTAATCGACCAG 59.674 40.741 0.00 0.00 37.22 4.00
146 147 7.599245 GTGATTATAGTTTCCTAATCGACCAGG 59.401 40.741 7.67 7.67 37.22 4.45
147 148 2.693267 AGTTTCCTAATCGACCAGGC 57.307 50.000 8.92 0.00 0.00 4.85
148 149 1.906574 AGTTTCCTAATCGACCAGGCA 59.093 47.619 8.92 0.00 0.00 4.75
149 150 2.505819 AGTTTCCTAATCGACCAGGCAT 59.494 45.455 8.92 0.00 0.00 4.40
150 151 2.614057 GTTTCCTAATCGACCAGGCATG 59.386 50.000 8.92 0.00 0.00 4.06
166 167 5.594926 CAGGCATGGACTTTCATATTTTCC 58.405 41.667 0.00 0.00 0.00 3.13
167 168 5.361857 CAGGCATGGACTTTCATATTTTCCT 59.638 40.000 0.00 0.00 0.00 3.36
168 169 5.595952 AGGCATGGACTTTCATATTTTCCTC 59.404 40.000 0.00 0.00 0.00 3.71
169 170 5.221322 GGCATGGACTTTCATATTTTCCTCC 60.221 44.000 0.00 0.00 0.00 4.30
170 171 5.506317 GCATGGACTTTCATATTTTCCTCCG 60.506 44.000 0.00 0.00 0.00 4.63
171 172 3.945285 TGGACTTTCATATTTTCCTCCGC 59.055 43.478 0.00 0.00 0.00 5.54
172 173 3.002348 GGACTTTCATATTTTCCTCCGCG 59.998 47.826 0.00 0.00 0.00 6.46
173 174 2.943033 ACTTTCATATTTTCCTCCGCGG 59.057 45.455 22.12 22.12 0.00 6.46
174 175 2.702592 TTCATATTTTCCTCCGCGGT 57.297 45.000 27.15 6.17 0.00 5.68
175 176 1.948104 TCATATTTTCCTCCGCGGTG 58.052 50.000 27.15 23.40 0.00 4.94
176 177 0.944386 CATATTTTCCTCCGCGGTGG 59.056 55.000 35.04 35.04 40.09 4.61
185 186 4.487412 CCGCGGTGGAGTACGGTC 62.487 72.222 19.50 0.00 42.00 4.79
186 187 3.740397 CGCGGTGGAGTACGGTCA 61.740 66.667 0.00 0.00 32.62 4.02
187 188 2.181021 GCGGTGGAGTACGGTCAG 59.819 66.667 0.00 0.00 32.62 3.51
188 189 2.633509 GCGGTGGAGTACGGTCAGT 61.634 63.158 0.00 0.00 32.62 3.41
189 190 1.505353 CGGTGGAGTACGGTCAGTC 59.495 63.158 0.00 0.00 0.00 3.51
190 191 1.239296 CGGTGGAGTACGGTCAGTCA 61.239 60.000 0.00 0.00 0.00 3.41
191 192 0.963962 GGTGGAGTACGGTCAGTCAA 59.036 55.000 0.00 0.00 0.00 3.18
192 193 1.549170 GGTGGAGTACGGTCAGTCAAT 59.451 52.381 0.00 0.00 0.00 2.57
193 194 2.607187 GTGGAGTACGGTCAGTCAATG 58.393 52.381 0.00 0.00 0.00 2.82
194 195 2.029290 GTGGAGTACGGTCAGTCAATGT 60.029 50.000 0.00 0.00 0.00 2.71
195 196 3.192001 GTGGAGTACGGTCAGTCAATGTA 59.808 47.826 0.00 0.00 0.00 2.29
196 197 3.827876 TGGAGTACGGTCAGTCAATGTAA 59.172 43.478 0.00 0.00 0.00 2.41
197 198 4.281435 TGGAGTACGGTCAGTCAATGTAAA 59.719 41.667 0.00 0.00 0.00 2.01
198 199 5.046878 TGGAGTACGGTCAGTCAATGTAAAT 60.047 40.000 0.00 0.00 0.00 1.40
199 200 5.873164 GGAGTACGGTCAGTCAATGTAAATT 59.127 40.000 0.00 0.00 0.00 1.82
200 201 6.183360 GGAGTACGGTCAGTCAATGTAAATTG 60.183 42.308 0.00 0.00 0.00 2.32
201 202 4.419522 ACGGTCAGTCAATGTAAATTGC 57.580 40.909 0.22 0.00 0.00 3.56
202 203 4.072131 ACGGTCAGTCAATGTAAATTGCT 58.928 39.130 0.22 0.00 0.00 3.91
203 204 5.242434 ACGGTCAGTCAATGTAAATTGCTA 58.758 37.500 0.22 0.00 0.00 3.49
204 205 5.703592 ACGGTCAGTCAATGTAAATTGCTAA 59.296 36.000 0.22 0.00 0.00 3.09
205 206 6.128282 ACGGTCAGTCAATGTAAATTGCTAAG 60.128 38.462 0.22 0.00 0.00 2.18
206 207 6.128282 CGGTCAGTCAATGTAAATTGCTAAGT 60.128 38.462 0.22 0.00 0.00 2.24
207 208 7.023575 GGTCAGTCAATGTAAATTGCTAAGTG 58.976 38.462 0.22 0.00 0.00 3.16
208 209 6.524586 GTCAGTCAATGTAAATTGCTAAGTGC 59.475 38.462 0.22 0.00 43.25 4.40
220 221 2.483876 GCTAAGTGCACACAGAGAACA 58.516 47.619 21.04 0.00 42.31 3.18
221 222 2.478134 GCTAAGTGCACACAGAGAACAG 59.522 50.000 21.04 3.30 42.31 3.16
222 223 2.988010 AAGTGCACACAGAGAACAGA 57.012 45.000 21.04 0.00 0.00 3.41
223 224 3.482156 AAGTGCACACAGAGAACAGAT 57.518 42.857 21.04 0.00 0.00 2.90
224 225 3.482156 AGTGCACACAGAGAACAGATT 57.518 42.857 21.04 0.00 0.00 2.40
225 226 3.397482 AGTGCACACAGAGAACAGATTC 58.603 45.455 21.04 0.00 34.78 2.52
226 227 2.156504 GTGCACACAGAGAACAGATTCG 59.843 50.000 13.17 0.00 40.04 3.34
227 228 1.728971 GCACACAGAGAACAGATTCGG 59.271 52.381 0.00 0.00 40.04 4.30
228 229 2.868044 GCACACAGAGAACAGATTCGGT 60.868 50.000 0.00 0.00 40.04 4.69
229 230 3.393800 CACACAGAGAACAGATTCGGTT 58.606 45.455 1.63 1.63 40.04 4.44
230 231 4.556233 CACACAGAGAACAGATTCGGTTA 58.444 43.478 2.05 0.00 40.04 2.85
231 232 4.988540 CACACAGAGAACAGATTCGGTTAA 59.011 41.667 2.05 0.00 40.04 2.01
232 233 5.119279 CACACAGAGAACAGATTCGGTTAAG 59.881 44.000 2.05 0.00 40.04 1.85
233 234 4.627467 CACAGAGAACAGATTCGGTTAAGG 59.373 45.833 2.05 0.00 40.04 2.69
234 235 3.619038 CAGAGAACAGATTCGGTTAAGGC 59.381 47.826 2.05 0.00 40.04 4.35
235 236 3.515901 AGAGAACAGATTCGGTTAAGGCT 59.484 43.478 2.05 0.00 40.04 4.58
236 237 4.710375 AGAGAACAGATTCGGTTAAGGCTA 59.290 41.667 2.05 0.00 40.04 3.93
237 238 5.012328 AGAACAGATTCGGTTAAGGCTAG 57.988 43.478 2.05 0.00 40.04 3.42
238 239 3.180891 ACAGATTCGGTTAAGGCTAGC 57.819 47.619 6.04 6.04 0.00 3.42
239 240 2.158943 ACAGATTCGGTTAAGGCTAGCC 60.159 50.000 27.19 27.19 0.00 3.93
242 243 4.926207 CGGTTAAGGCTAGCCGTT 57.074 55.556 27.50 22.19 44.42 4.44
244 245 1.849097 CGGTTAAGGCTAGCCGTTAG 58.151 55.000 27.50 14.09 44.42 2.34
245 246 1.406539 CGGTTAAGGCTAGCCGTTAGA 59.593 52.381 27.50 11.29 44.42 2.10
246 247 2.035576 CGGTTAAGGCTAGCCGTTAGAT 59.964 50.000 27.50 12.96 44.42 1.98
247 248 3.492137 CGGTTAAGGCTAGCCGTTAGATT 60.492 47.826 27.50 17.21 44.42 2.40
248 249 3.808174 GGTTAAGGCTAGCCGTTAGATTG 59.192 47.826 27.50 0.00 41.95 2.67
249 250 4.442472 GGTTAAGGCTAGCCGTTAGATTGA 60.442 45.833 27.50 9.41 41.95 2.57
250 251 3.460857 AAGGCTAGCCGTTAGATTGAG 57.539 47.619 27.83 0.00 41.95 3.02
251 252 2.389715 AGGCTAGCCGTTAGATTGAGT 58.610 47.619 27.83 2.75 41.95 3.41
252 253 2.766828 AGGCTAGCCGTTAGATTGAGTT 59.233 45.455 27.83 2.52 41.95 3.01
253 254 3.197983 AGGCTAGCCGTTAGATTGAGTTT 59.802 43.478 27.83 2.04 41.95 2.66
254 255 4.404715 AGGCTAGCCGTTAGATTGAGTTTA 59.595 41.667 27.83 0.00 41.95 2.01
255 256 4.745620 GGCTAGCCGTTAGATTGAGTTTAG 59.254 45.833 20.16 0.00 0.00 1.85
256 257 5.349809 GCTAGCCGTTAGATTGAGTTTAGT 58.650 41.667 2.29 0.00 0.00 2.24
257 258 5.232414 GCTAGCCGTTAGATTGAGTTTAGTG 59.768 44.000 2.29 0.00 0.00 2.74
258 259 4.504858 AGCCGTTAGATTGAGTTTAGTGG 58.495 43.478 0.00 0.00 0.00 4.00
259 260 3.621715 GCCGTTAGATTGAGTTTAGTGGG 59.378 47.826 0.00 0.00 0.00 4.61
260 261 4.622220 GCCGTTAGATTGAGTTTAGTGGGA 60.622 45.833 0.00 0.00 0.00 4.37
261 262 4.868734 CCGTTAGATTGAGTTTAGTGGGAC 59.131 45.833 0.00 0.00 0.00 4.46
262 263 5.337330 CCGTTAGATTGAGTTTAGTGGGACT 60.337 44.000 0.00 0.00 0.00 3.85
263 264 6.127535 CCGTTAGATTGAGTTTAGTGGGACTA 60.128 42.308 0.00 0.00 0.00 2.59
264 265 7.318141 CGTTAGATTGAGTTTAGTGGGACTAA 58.682 38.462 0.00 0.00 38.79 2.24
265 266 7.980099 CGTTAGATTGAGTTTAGTGGGACTAAT 59.020 37.037 0.00 0.00 40.08 1.73
266 267 9.315525 GTTAGATTGAGTTTAGTGGGACTAATC 57.684 37.037 0.00 0.00 40.08 1.75
267 268 7.496346 AGATTGAGTTTAGTGGGACTAATCA 57.504 36.000 0.00 0.00 40.08 2.57
268 269 8.095452 AGATTGAGTTTAGTGGGACTAATCAT 57.905 34.615 0.00 0.00 40.08 2.45
269 270 7.989741 AGATTGAGTTTAGTGGGACTAATCATG 59.010 37.037 0.00 0.00 40.08 3.07
270 271 5.428253 TGAGTTTAGTGGGACTAATCATGC 58.572 41.667 0.00 0.00 40.08 4.06
271 272 4.442706 AGTTTAGTGGGACTAATCATGCG 58.557 43.478 0.00 0.00 40.08 4.73
272 273 3.469008 TTAGTGGGACTAATCATGCGG 57.531 47.619 0.00 0.00 35.89 5.69
273 274 1.204146 AGTGGGACTAATCATGCGGT 58.796 50.000 0.00 0.00 0.00 5.68
274 275 1.134401 AGTGGGACTAATCATGCGGTG 60.134 52.381 0.00 0.00 0.00 4.94
275 276 0.180171 TGGGACTAATCATGCGGTGG 59.820 55.000 0.00 0.00 0.00 4.61
276 277 0.180406 GGGACTAATCATGCGGTGGT 59.820 55.000 0.00 0.00 0.00 4.16
277 278 1.414919 GGGACTAATCATGCGGTGGTA 59.585 52.381 0.00 0.00 0.00 3.25
278 279 2.158871 GGGACTAATCATGCGGTGGTAA 60.159 50.000 0.00 0.00 0.00 2.85
279 280 3.496160 GGGACTAATCATGCGGTGGTAAT 60.496 47.826 0.00 0.00 0.00 1.89
280 281 3.498397 GGACTAATCATGCGGTGGTAATG 59.502 47.826 0.00 0.00 0.00 1.90
281 282 4.127171 GACTAATCATGCGGTGGTAATGT 58.873 43.478 0.00 0.00 0.00 2.71
282 283 5.284861 ACTAATCATGCGGTGGTAATGTA 57.715 39.130 0.00 0.00 0.00 2.29
283 284 5.865085 ACTAATCATGCGGTGGTAATGTAT 58.135 37.500 0.00 0.00 0.00 2.29
284 285 5.932303 ACTAATCATGCGGTGGTAATGTATC 59.068 40.000 0.00 0.00 0.00 2.24
285 286 3.120321 TCATGCGGTGGTAATGTATCC 57.880 47.619 0.00 0.00 0.00 2.59
286 287 1.798223 CATGCGGTGGTAATGTATCCG 59.202 52.381 0.00 0.00 43.37 4.18
287 288 0.825410 TGCGGTGGTAATGTATCCGT 59.175 50.000 0.00 0.00 42.62 4.69
288 289 1.214367 GCGGTGGTAATGTATCCGTG 58.786 55.000 0.00 0.00 42.62 4.94
289 290 1.472026 GCGGTGGTAATGTATCCGTGT 60.472 52.381 0.00 0.00 42.62 4.49
290 291 2.223782 GCGGTGGTAATGTATCCGTGTA 60.224 50.000 0.00 0.00 42.62 2.90
291 292 3.553508 GCGGTGGTAATGTATCCGTGTAT 60.554 47.826 0.00 0.00 42.62 2.29
292 293 3.985279 CGGTGGTAATGTATCCGTGTATG 59.015 47.826 0.00 0.00 36.99 2.39
293 294 4.500205 CGGTGGTAATGTATCCGTGTATGT 60.500 45.833 0.00 0.00 36.99 2.29
294 295 5.362263 GGTGGTAATGTATCCGTGTATGTT 58.638 41.667 0.00 0.00 0.00 2.71
295 296 5.818857 GGTGGTAATGTATCCGTGTATGTTT 59.181 40.000 0.00 0.00 0.00 2.83
296 297 6.316890 GGTGGTAATGTATCCGTGTATGTTTT 59.683 38.462 0.00 0.00 0.00 2.43
297 298 7.184106 GTGGTAATGTATCCGTGTATGTTTTG 58.816 38.462 0.00 0.00 0.00 2.44
298 299 6.879993 TGGTAATGTATCCGTGTATGTTTTGT 59.120 34.615 0.00 0.00 0.00 2.83
299 300 8.039538 TGGTAATGTATCCGTGTATGTTTTGTA 58.960 33.333 0.00 0.00 0.00 2.41
300 301 8.881743 GGTAATGTATCCGTGTATGTTTTGTAA 58.118 33.333 0.00 0.00 0.00 2.41
301 302 9.910511 GTAATGTATCCGTGTATGTTTTGTAAG 57.089 33.333 0.00 0.00 0.00 2.34
302 303 6.971527 TGTATCCGTGTATGTTTTGTAAGG 57.028 37.500 0.00 0.00 0.00 2.69
303 304 6.465948 TGTATCCGTGTATGTTTTGTAAGGT 58.534 36.000 0.00 0.00 0.00 3.50
304 305 5.873179 ATCCGTGTATGTTTTGTAAGGTG 57.127 39.130 0.00 0.00 0.00 4.00
305 306 3.499157 TCCGTGTATGTTTTGTAAGGTGC 59.501 43.478 0.00 0.00 0.00 5.01
306 307 3.251245 CCGTGTATGTTTTGTAAGGTGCA 59.749 43.478 0.00 0.00 0.00 4.57
307 308 4.215965 CGTGTATGTTTTGTAAGGTGCAC 58.784 43.478 8.80 8.80 0.00 4.57
308 309 4.024387 CGTGTATGTTTTGTAAGGTGCACT 60.024 41.667 17.98 0.00 0.00 4.40
309 310 5.504994 CGTGTATGTTTTGTAAGGTGCACTT 60.505 40.000 17.98 6.12 43.28 3.16
310 311 6.292973 CGTGTATGTTTTGTAAGGTGCACTTA 60.293 38.462 17.98 10.38 40.64 2.24
311 312 7.075741 GTGTATGTTTTGTAAGGTGCACTTAG 58.924 38.462 17.98 0.00 42.12 2.18
312 313 6.993308 TGTATGTTTTGTAAGGTGCACTTAGA 59.007 34.615 17.98 9.01 42.12 2.10
313 314 6.560253 ATGTTTTGTAAGGTGCACTTAGAG 57.440 37.500 17.98 0.00 42.12 2.43
314 315 5.676552 TGTTTTGTAAGGTGCACTTAGAGA 58.323 37.500 17.98 4.82 42.12 3.10
315 316 6.116806 TGTTTTGTAAGGTGCACTTAGAGAA 58.883 36.000 17.98 10.10 42.12 2.87
316 317 6.260050 TGTTTTGTAAGGTGCACTTAGAGAAG 59.740 38.462 17.98 0.00 42.12 2.85
317 318 5.801531 TTGTAAGGTGCACTTAGAGAAGA 57.198 39.130 17.98 0.00 42.12 2.87
318 319 6.360370 TTGTAAGGTGCACTTAGAGAAGAT 57.640 37.500 17.98 0.00 42.12 2.40
319 320 7.476540 TTGTAAGGTGCACTTAGAGAAGATA 57.523 36.000 17.98 0.00 42.12 1.98
320 321 7.476540 TGTAAGGTGCACTTAGAGAAGATAA 57.523 36.000 17.98 0.00 42.12 1.75
321 322 8.079211 TGTAAGGTGCACTTAGAGAAGATAAT 57.921 34.615 17.98 0.00 42.12 1.28
322 323 7.981789 TGTAAGGTGCACTTAGAGAAGATAATG 59.018 37.037 17.98 0.00 42.12 1.90
323 324 6.552445 AGGTGCACTTAGAGAAGATAATGT 57.448 37.500 17.98 0.00 36.45 2.71
324 325 6.951971 AGGTGCACTTAGAGAAGATAATGTT 58.048 36.000 17.98 0.00 36.45 2.71
325 326 7.398024 AGGTGCACTTAGAGAAGATAATGTTT 58.602 34.615 17.98 0.00 36.45 2.83
326 327 7.335422 AGGTGCACTTAGAGAAGATAATGTTTG 59.665 37.037 17.98 0.00 36.45 2.93
327 328 6.963805 GTGCACTTAGAGAAGATAATGTTTGC 59.036 38.462 10.32 0.00 36.45 3.68
328 329 6.881065 TGCACTTAGAGAAGATAATGTTTGCT 59.119 34.615 0.00 0.00 36.45 3.91
329 330 7.391554 TGCACTTAGAGAAGATAATGTTTGCTT 59.608 33.333 0.00 0.00 36.45 3.91
330 331 8.239998 GCACTTAGAGAAGATAATGTTTGCTTT 58.760 33.333 0.00 0.00 36.45 3.51
366 367 2.699321 AGATTAAAGCTAGGACGGACCC 59.301 50.000 0.00 0.00 40.05 4.46
367 368 2.242882 TTAAAGCTAGGACGGACCCT 57.757 50.000 0.00 0.00 40.05 4.34
400 401 3.663202 TGCTGCACTGCACATGAG 58.337 55.556 0.00 0.00 38.12 2.90
401 402 2.178521 GCTGCACTGCACATGAGC 59.821 61.111 8.32 8.32 33.79 4.26
402 403 2.622962 GCTGCACTGCACATGAGCA 61.623 57.895 17.11 17.11 43.35 4.26
418 419 0.249676 AGCAGAGCAGACCACTCATG 59.750 55.000 0.00 0.00 36.58 3.07
464 465 4.813750 TTAAGTCTTGTACTACAGCCCC 57.186 45.455 0.00 0.00 37.50 5.80
480 481 1.299541 CCCCGGAAAATCATCAGTCG 58.700 55.000 0.73 0.00 0.00 4.18
499 500 1.070309 CGAATCTTTATGCTGCTCGCC 60.070 52.381 0.00 0.00 38.05 5.54
535 538 2.413112 CACACACAAGCCATTACGAGAG 59.587 50.000 0.00 0.00 0.00 3.20
555 558 1.073768 GAGAAACAGAGAGGCGTCGC 61.074 60.000 9.22 9.22 0.00 5.19
557 560 2.797866 GAAACAGAGAGGCGTCGCGA 62.798 60.000 3.71 3.71 0.00 5.87
560 563 1.941734 CAGAGAGGCGTCGCGATTC 60.942 63.158 14.06 7.09 0.00 2.52
563 566 2.655685 GAGGCGTCGCGATTCCTC 60.656 66.667 30.44 30.44 38.40 3.71
569 572 2.202797 TCGCGATTCCTCAGCTGC 60.203 61.111 9.47 0.00 0.00 5.25
640 787 2.102357 CACCGTCGTCCATCTCCG 59.898 66.667 0.00 0.00 0.00 4.63
658 805 2.442272 TCTCTAGCCGCCCTGGTC 60.442 66.667 0.00 0.00 41.21 4.02
667 814 2.191641 GCCCTGGTCCATCTCAGC 59.808 66.667 0.00 0.00 0.00 4.26
671 818 1.142748 CTGGTCCATCTCAGCCGTC 59.857 63.158 0.00 0.00 0.00 4.79
678 825 0.671251 CATCTCAGCCGTCCTCTACC 59.329 60.000 0.00 0.00 0.00 3.18
679 826 0.259065 ATCTCAGCCGTCCTCTACCA 59.741 55.000 0.00 0.00 0.00 3.25
692 839 2.828520 CCTCTACCAGTCTCTCTGCAAA 59.171 50.000 0.00 0.00 42.38 3.68
696 843 1.419387 ACCAGTCTCTCTGCAAAGCTT 59.581 47.619 0.00 0.00 42.38 3.74
698 845 2.225963 CCAGTCTCTCTGCAAAGCTTTG 59.774 50.000 30.70 30.70 42.38 2.77
700 847 3.752222 CAGTCTCTCTGCAAAGCTTTGAT 59.248 43.478 37.14 2.94 39.84 2.57
709 856 3.870419 TGCAAAGCTTTGATTGTTTGTCC 59.130 39.130 37.14 18.35 40.55 4.02
731 878 5.283060 CGAAGGTAATTTCACTTCCACTG 57.717 43.478 9.48 0.00 37.84 3.66
755 902 5.336929 GGTCCACCTGTTGTTGTTTAGTTTT 60.337 40.000 0.00 0.00 0.00 2.43
769 916 7.324354 TGTTTAGTTTTACTTCCACCTGTTC 57.676 36.000 0.00 0.00 0.00 3.18
779 926 3.576078 TCCACCTGTTCTGTGAACATT 57.424 42.857 12.63 2.19 35.74 2.71
827 977 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
838 988 5.299028 TGTTGTTGTTGTTGTATGCTGATCT 59.701 36.000 0.00 0.00 0.00 2.75
842 992 8.109705 TGTTGTTGTTGTATGCTGATCTTAAT 57.890 30.769 0.00 0.00 0.00 1.40
845 995 7.537715 TGTTGTTGTATGCTGATCTTAATTGG 58.462 34.615 0.00 0.00 0.00 3.16
867 1017 6.710278 TGGTTGTAATCATTCATCTCACTCA 58.290 36.000 0.00 0.00 0.00 3.41
870 1020 6.915544 TGTAATCATTCATCTCACTCAAGC 57.084 37.500 0.00 0.00 0.00 4.01
883 1033 3.118629 TCACTCAAGCTTTCACACACTCT 60.119 43.478 0.00 0.00 0.00 3.24
913 1063 5.184864 TCTCCAGAACAACAAACAAACACAT 59.815 36.000 0.00 0.00 0.00 3.21
940 1090 0.247736 AGAGCCTTCGTAGCAACCAG 59.752 55.000 0.00 0.00 0.00 4.00
959 1109 1.419387 AGCTGATATCTTCCACCCAGC 59.581 52.381 3.98 0.00 45.09 4.85
1048 1198 1.078214 CTCATCCCAAAGCTCGGCA 60.078 57.895 0.00 0.00 0.00 5.69
1062 1212 1.034838 TCGGCAAACTGCTTGTTGGT 61.035 50.000 0.00 0.00 44.28 3.67
1083 1233 1.179814 AGTTCACCCTCGAGAAGCGT 61.180 55.000 15.71 1.08 41.80 5.07
1086 1236 1.006102 CACCCTCGAGAAGCGTGTT 60.006 57.895 15.71 0.00 41.80 3.32
1161 1311 3.966543 AAGGTGGGGAAGGTGCCG 61.967 66.667 0.00 0.00 0.00 5.69
1258 1408 1.725641 TGACTCATTCATGGTGCGTC 58.274 50.000 12.35 12.35 0.00 5.19
1263 1413 1.003003 TCATTCATGGTGCGTCTGGAA 59.997 47.619 0.00 0.00 0.00 3.53
1295 1445 2.091555 AGCCTACCAACCCAAAGAACAA 60.092 45.455 0.00 0.00 0.00 2.83
1297 1447 3.491964 GCCTACCAACCCAAAGAACAAAC 60.492 47.826 0.00 0.00 0.00 2.93
1371 1521 4.148079 TCCATCGTATCTCTGATGCTCTT 58.852 43.478 0.00 0.00 40.48 2.85
1432 1582 3.746492 GCGTCAAAGGTATGAACAAGAGT 59.254 43.478 0.00 0.00 0.00 3.24
1522 1672 0.250124 TGTCGGCGTTGAAGAACCAT 60.250 50.000 6.85 0.00 0.00 3.55
1538 1688 2.977914 ACCATGAGACAAGTTGATCGG 58.022 47.619 10.54 7.39 0.00 4.18
1547 1697 2.884012 ACAAGTTGATCGGCATGTTGAA 59.116 40.909 10.54 0.00 0.00 2.69
1590 1740 2.159379 GCATCCATTGAAGACGGTTTCC 60.159 50.000 0.00 0.00 0.00 3.13
1958 2109 6.866480 TGCATTTTTCCCTTTATCTCATCAC 58.134 36.000 0.00 0.00 0.00 3.06
2113 2264 3.070748 GTGCTTTCTCCAAGAAGAGTCC 58.929 50.000 0.00 0.00 35.37 3.85
2114 2265 2.039084 TGCTTTCTCCAAGAAGAGTCCC 59.961 50.000 0.00 0.00 35.37 4.46
2288 2439 6.599638 GTCCTAAAGAATTGGTGCAAGTATCT 59.400 38.462 0.00 0.00 0.00 1.98
2292 2443 7.472334 AAAGAATTGGTGCAAGTATCTGAAT 57.528 32.000 0.00 0.00 0.00 2.57
2429 2580 1.617947 GCAGGGGACTCACGGAAGAT 61.618 60.000 0.00 0.00 40.21 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.028850 TCTAGAACCGGGACCAATGTAG 58.971 50.000 6.32 0.00 0.00 2.74
1 2 2.762327 GTCTAGAACCGGGACCAATGTA 59.238 50.000 6.32 0.00 0.00 2.29
2 3 1.553704 GTCTAGAACCGGGACCAATGT 59.446 52.381 6.32 0.00 0.00 2.71
3 4 1.831736 AGTCTAGAACCGGGACCAATG 59.168 52.381 6.32 0.00 0.00 2.82
4 5 1.831736 CAGTCTAGAACCGGGACCAAT 59.168 52.381 6.32 0.00 0.00 3.16
5 6 1.203087 TCAGTCTAGAACCGGGACCAA 60.203 52.381 6.32 0.00 0.00 3.67
6 7 0.406750 TCAGTCTAGAACCGGGACCA 59.593 55.000 6.32 0.00 0.00 4.02
7 8 1.204231 GTTCAGTCTAGAACCGGGACC 59.796 57.143 6.32 0.00 41.52 4.46
8 9 2.651135 GTTCAGTCTAGAACCGGGAC 57.349 55.000 6.32 2.53 41.52 4.46
14 15 2.169330 AGTCCCGGTTCAGTCTAGAAC 58.831 52.381 0.00 0.00 45.50 3.01
15 16 2.599408 AGTCCCGGTTCAGTCTAGAA 57.401 50.000 0.00 0.00 0.00 2.10
16 17 3.726557 TTAGTCCCGGTTCAGTCTAGA 57.273 47.619 0.00 0.00 0.00 2.43
17 18 3.068307 CCATTAGTCCCGGTTCAGTCTAG 59.932 52.174 0.00 0.00 0.00 2.43
18 19 3.028850 CCATTAGTCCCGGTTCAGTCTA 58.971 50.000 0.00 0.00 0.00 2.59
19 20 1.831736 CCATTAGTCCCGGTTCAGTCT 59.168 52.381 0.00 0.00 0.00 3.24
20 21 1.134491 CCCATTAGTCCCGGTTCAGTC 60.134 57.143 0.00 0.00 0.00 3.51
21 22 0.909623 CCCATTAGTCCCGGTTCAGT 59.090 55.000 0.00 0.00 0.00 3.41
22 23 0.463833 GCCCATTAGTCCCGGTTCAG 60.464 60.000 0.00 0.00 0.00 3.02
23 24 0.912487 AGCCCATTAGTCCCGGTTCA 60.912 55.000 0.00 0.00 0.00 3.18
24 25 0.463833 CAGCCCATTAGTCCCGGTTC 60.464 60.000 0.00 0.00 0.00 3.62
25 26 0.912487 TCAGCCCATTAGTCCCGGTT 60.912 55.000 0.00 0.00 0.00 4.44
26 27 0.694444 ATCAGCCCATTAGTCCCGGT 60.694 55.000 0.00 0.00 0.00 5.28
27 28 0.250467 CATCAGCCCATTAGTCCCGG 60.250 60.000 0.00 0.00 0.00 5.73
28 29 0.886490 GCATCAGCCCATTAGTCCCG 60.886 60.000 0.00 0.00 33.58 5.14
29 30 0.886490 CGCATCAGCCCATTAGTCCC 60.886 60.000 0.00 0.00 37.52 4.46
30 31 0.886490 CCGCATCAGCCCATTAGTCC 60.886 60.000 0.00 0.00 37.52 3.85
31 32 1.510480 GCCGCATCAGCCCATTAGTC 61.510 60.000 0.00 0.00 37.52 2.59
32 33 1.526917 GCCGCATCAGCCCATTAGT 60.527 57.895 0.00 0.00 37.52 2.24
33 34 2.263741 GGCCGCATCAGCCCATTAG 61.264 63.158 0.00 0.00 45.16 1.73
34 35 2.203337 GGCCGCATCAGCCCATTA 60.203 61.111 0.00 0.00 45.16 1.90
41 42 2.043604 TATGGTCCAGGCCGCATCAG 62.044 60.000 0.00 0.00 0.00 2.90
42 43 2.043604 CTATGGTCCAGGCCGCATCA 62.044 60.000 0.00 0.00 0.00 3.07
43 44 1.302033 CTATGGTCCAGGCCGCATC 60.302 63.158 0.00 0.00 0.00 3.91
44 45 2.831770 CTATGGTCCAGGCCGCAT 59.168 61.111 0.00 0.00 0.00 4.73
45 46 4.175337 GCTATGGTCCAGGCCGCA 62.175 66.667 0.00 0.00 0.00 5.69
46 47 4.937431 GGCTATGGTCCAGGCCGC 62.937 72.222 18.95 8.82 35.08 6.53
49 50 1.926426 AACAGGGCTATGGTCCAGGC 61.926 60.000 1.28 10.21 40.27 4.85
50 51 0.625849 AAACAGGGCTATGGTCCAGG 59.374 55.000 1.28 0.00 40.27 4.45
51 52 2.025887 AGAAAACAGGGCTATGGTCCAG 60.026 50.000 1.28 0.00 40.27 3.86
52 53 1.992557 AGAAAACAGGGCTATGGTCCA 59.007 47.619 1.28 0.00 40.27 4.02
53 54 2.808906 AGAAAACAGGGCTATGGTCC 57.191 50.000 0.00 0.00 37.52 4.46
54 55 4.489306 AGTAGAAAACAGGGCTATGGTC 57.511 45.455 0.00 0.00 0.00 4.02
55 56 5.030820 ACTAGTAGAAAACAGGGCTATGGT 58.969 41.667 3.59 0.00 0.00 3.55
56 57 5.104900 ACACTAGTAGAAAACAGGGCTATGG 60.105 44.000 3.59 0.00 0.00 2.74
57 58 5.978814 ACACTAGTAGAAAACAGGGCTATG 58.021 41.667 3.59 0.00 0.00 2.23
58 59 6.622427 AACACTAGTAGAAAACAGGGCTAT 57.378 37.500 3.59 0.00 0.00 2.97
59 60 6.950041 TCTAACACTAGTAGAAAACAGGGCTA 59.050 38.462 3.59 0.00 0.00 3.93
60 61 4.976540 AACACTAGTAGAAAACAGGGCT 57.023 40.909 3.59 0.00 0.00 5.19
61 62 6.034161 TCTAACACTAGTAGAAAACAGGGC 57.966 41.667 3.59 0.00 0.00 5.19
62 63 7.545965 CACATCTAACACTAGTAGAAAACAGGG 59.454 40.741 3.59 0.00 0.00 4.45
63 64 7.063544 GCACATCTAACACTAGTAGAAAACAGG 59.936 40.741 3.59 0.00 0.00 4.00
64 65 7.063544 GGCACATCTAACACTAGTAGAAAACAG 59.936 40.741 3.59 0.00 0.00 3.16
65 66 6.872020 GGCACATCTAACACTAGTAGAAAACA 59.128 38.462 3.59 0.00 0.00 2.83
66 67 6.313164 GGGCACATCTAACACTAGTAGAAAAC 59.687 42.308 3.59 0.00 0.00 2.43
67 68 6.403878 GGGCACATCTAACACTAGTAGAAAA 58.596 40.000 3.59 0.00 0.00 2.29
68 69 5.393787 CGGGCACATCTAACACTAGTAGAAA 60.394 44.000 3.59 0.00 0.00 2.52
69 70 4.097437 CGGGCACATCTAACACTAGTAGAA 59.903 45.833 3.59 0.00 0.00 2.10
70 71 3.630769 CGGGCACATCTAACACTAGTAGA 59.369 47.826 3.59 0.00 0.00 2.59
71 72 3.380637 ACGGGCACATCTAACACTAGTAG 59.619 47.826 0.00 0.00 0.00 2.57
72 73 3.129813 CACGGGCACATCTAACACTAGTA 59.870 47.826 0.00 0.00 0.00 1.82
73 74 2.094182 CACGGGCACATCTAACACTAGT 60.094 50.000 0.00 0.00 0.00 2.57
74 75 2.165641 TCACGGGCACATCTAACACTAG 59.834 50.000 0.00 0.00 0.00 2.57
75 76 2.172679 TCACGGGCACATCTAACACTA 58.827 47.619 0.00 0.00 0.00 2.74
76 77 0.973632 TCACGGGCACATCTAACACT 59.026 50.000 0.00 0.00 0.00 3.55
77 78 2.024176 ATCACGGGCACATCTAACAC 57.976 50.000 0.00 0.00 0.00 3.32
78 79 2.779755 AATCACGGGCACATCTAACA 57.220 45.000 0.00 0.00 0.00 2.41
79 80 3.793559 ACTAATCACGGGCACATCTAAC 58.206 45.455 0.00 0.00 0.00 2.34
80 81 4.481368 AACTAATCACGGGCACATCTAA 57.519 40.909 0.00 0.00 0.00 2.10
81 82 4.161565 AGAAACTAATCACGGGCACATCTA 59.838 41.667 0.00 0.00 0.00 1.98
82 83 3.055094 AGAAACTAATCACGGGCACATCT 60.055 43.478 0.00 0.00 0.00 2.90
83 84 3.270877 AGAAACTAATCACGGGCACATC 58.729 45.455 0.00 0.00 0.00 3.06
84 85 3.350219 AGAAACTAATCACGGGCACAT 57.650 42.857 0.00 0.00 0.00 3.21
85 86 2.851263 AGAAACTAATCACGGGCACA 57.149 45.000 0.00 0.00 0.00 4.57
86 87 5.813080 ATTAAGAAACTAATCACGGGCAC 57.187 39.130 0.00 0.00 0.00 5.01
87 88 7.276658 TCATATTAAGAAACTAATCACGGGCA 58.723 34.615 0.00 0.00 0.00 5.36
88 89 7.724305 TCATATTAAGAAACTAATCACGGGC 57.276 36.000 0.00 0.00 0.00 6.13
89 90 9.273016 ACATCATATTAAGAAACTAATCACGGG 57.727 33.333 0.00 0.00 0.00 5.28
95 96 9.832445 ACGGACACATCATATTAAGAAACTAAT 57.168 29.630 0.00 0.00 0.00 1.73
96 97 9.093970 CACGGACACATCATATTAAGAAACTAA 57.906 33.333 0.00 0.00 0.00 2.24
97 98 8.471609 TCACGGACACATCATATTAAGAAACTA 58.528 33.333 0.00 0.00 0.00 2.24
98 99 7.327975 TCACGGACACATCATATTAAGAAACT 58.672 34.615 0.00 0.00 0.00 2.66
99 100 7.534085 TCACGGACACATCATATTAAGAAAC 57.466 36.000 0.00 0.00 0.00 2.78
100 101 8.731275 AATCACGGACACATCATATTAAGAAA 57.269 30.769 0.00 0.00 0.00 2.52
101 102 9.996554 ATAATCACGGACACATCATATTAAGAA 57.003 29.630 0.00 0.00 0.00 2.52
106 107 9.778741 AAACTATAATCACGGACACATCATATT 57.221 29.630 0.00 0.00 0.00 1.28
107 108 9.424319 GAAACTATAATCACGGACACATCATAT 57.576 33.333 0.00 0.00 0.00 1.78
108 109 7.870954 GGAAACTATAATCACGGACACATCATA 59.129 37.037 0.00 0.00 0.00 2.15
109 110 6.706270 GGAAACTATAATCACGGACACATCAT 59.294 38.462 0.00 0.00 0.00 2.45
110 111 6.046593 GGAAACTATAATCACGGACACATCA 58.953 40.000 0.00 0.00 0.00 3.07
111 112 6.281405 AGGAAACTATAATCACGGACACATC 58.719 40.000 0.00 0.00 40.61 3.06
112 113 6.235231 AGGAAACTATAATCACGGACACAT 57.765 37.500 0.00 0.00 40.61 3.21
113 114 5.670792 AGGAAACTATAATCACGGACACA 57.329 39.130 0.00 0.00 40.61 3.72
114 115 7.114529 CGATTAGGAAACTATAATCACGGACAC 59.885 40.741 5.95 0.00 43.94 3.67
115 116 7.013559 TCGATTAGGAAACTATAATCACGGACA 59.986 37.037 5.95 0.00 43.94 4.02
116 117 7.325579 GTCGATTAGGAAACTATAATCACGGAC 59.674 40.741 0.00 2.46 43.94 4.79
117 118 7.365741 GTCGATTAGGAAACTATAATCACGGA 58.634 38.462 0.00 0.00 43.94 4.69
118 119 6.585322 GGTCGATTAGGAAACTATAATCACGG 59.415 42.308 0.00 0.00 43.94 4.94
119 120 7.143340 TGGTCGATTAGGAAACTATAATCACG 58.857 38.462 0.00 0.00 43.94 4.35
120 121 7.599245 CCTGGTCGATTAGGAAACTATAATCAC 59.401 40.741 11.35 3.73 43.94 3.06
121 122 7.667557 CCTGGTCGATTAGGAAACTATAATCA 58.332 38.462 11.35 0.00 43.94 2.57
122 123 6.590677 GCCTGGTCGATTAGGAAACTATAATC 59.409 42.308 18.80 0.00 43.94 1.75
123 124 6.042781 TGCCTGGTCGATTAGGAAACTATAAT 59.957 38.462 18.80 0.00 43.94 1.28
124 125 5.364446 TGCCTGGTCGATTAGGAAACTATAA 59.636 40.000 18.80 0.00 43.94 0.98
125 126 4.897076 TGCCTGGTCGATTAGGAAACTATA 59.103 41.667 18.80 0.00 43.94 1.31
126 127 3.709653 TGCCTGGTCGATTAGGAAACTAT 59.290 43.478 18.80 0.00 43.94 2.12
127 128 3.101437 TGCCTGGTCGATTAGGAAACTA 58.899 45.455 18.80 0.64 43.67 2.24
128 129 6.735875 CCATGCCTGGTCGATTAGGAAACT 62.736 50.000 18.80 0.00 40.35 2.66
129 130 2.396590 TGCCTGGTCGATTAGGAAAC 57.603 50.000 18.80 5.05 36.11 2.78
130 131 2.421388 CCATGCCTGGTCGATTAGGAAA 60.421 50.000 18.80 8.53 37.79 3.13
131 132 1.140852 CCATGCCTGGTCGATTAGGAA 59.859 52.381 18.80 10.84 37.79 3.36
132 133 0.758734 CCATGCCTGGTCGATTAGGA 59.241 55.000 18.80 7.13 37.79 2.94
133 134 0.758734 TCCATGCCTGGTCGATTAGG 59.241 55.000 7.98 12.22 43.61 2.69
134 135 1.414181 AGTCCATGCCTGGTCGATTAG 59.586 52.381 7.98 0.00 43.61 1.73
135 136 1.496060 AGTCCATGCCTGGTCGATTA 58.504 50.000 7.98 0.00 43.61 1.75
136 137 0.620556 AAGTCCATGCCTGGTCGATT 59.379 50.000 7.98 0.00 43.61 3.34
137 138 0.620556 AAAGTCCATGCCTGGTCGAT 59.379 50.000 7.98 0.00 43.61 3.59
138 139 0.036388 GAAAGTCCATGCCTGGTCGA 60.036 55.000 7.98 0.00 43.61 4.20
139 140 0.321564 TGAAAGTCCATGCCTGGTCG 60.322 55.000 7.98 0.00 43.61 4.79
140 141 2.134789 ATGAAAGTCCATGCCTGGTC 57.865 50.000 7.98 2.41 43.61 4.02
141 142 3.959495 ATATGAAAGTCCATGCCTGGT 57.041 42.857 7.98 0.00 43.61 4.00
142 143 5.452356 GGAAAATATGAAAGTCCATGCCTGG 60.452 44.000 0.78 0.78 44.64 4.45
143 144 5.361857 AGGAAAATATGAAAGTCCATGCCTG 59.638 40.000 0.00 0.00 0.00 4.85
144 145 5.522641 AGGAAAATATGAAAGTCCATGCCT 58.477 37.500 0.00 0.00 0.00 4.75
145 146 5.221322 GGAGGAAAATATGAAAGTCCATGCC 60.221 44.000 0.00 0.00 0.00 4.40
146 147 5.506317 CGGAGGAAAATATGAAAGTCCATGC 60.506 44.000 0.00 0.00 0.00 4.06
147 148 5.506317 GCGGAGGAAAATATGAAAGTCCATG 60.506 44.000 0.00 0.00 0.00 3.66
148 149 4.580580 GCGGAGGAAAATATGAAAGTCCAT 59.419 41.667 0.00 0.00 0.00 3.41
149 150 3.945285 GCGGAGGAAAATATGAAAGTCCA 59.055 43.478 0.00 0.00 0.00 4.02
150 151 3.002348 CGCGGAGGAAAATATGAAAGTCC 59.998 47.826 0.00 0.00 0.00 3.85
151 152 3.002348 CCGCGGAGGAAAATATGAAAGTC 59.998 47.826 24.07 0.00 45.00 3.01
152 153 2.943033 CCGCGGAGGAAAATATGAAAGT 59.057 45.455 24.07 0.00 45.00 2.66
153 154 2.943033 ACCGCGGAGGAAAATATGAAAG 59.057 45.455 35.90 0.00 45.00 2.62
154 155 2.680841 CACCGCGGAGGAAAATATGAAA 59.319 45.455 35.90 0.00 45.00 2.69
155 156 2.285083 CACCGCGGAGGAAAATATGAA 58.715 47.619 35.90 0.00 45.00 2.57
156 157 1.474320 CCACCGCGGAGGAAAATATGA 60.474 52.381 35.05 0.00 45.00 2.15
157 158 0.944386 CCACCGCGGAGGAAAATATG 59.056 55.000 35.05 17.26 45.00 1.78
158 159 0.834612 TCCACCGCGGAGGAAAATAT 59.165 50.000 37.60 7.66 45.00 1.28
159 160 2.288834 TCCACCGCGGAGGAAAATA 58.711 52.632 37.60 18.22 45.00 1.40
160 161 3.074281 TCCACCGCGGAGGAAAAT 58.926 55.556 37.60 9.34 45.00 1.82
169 170 3.678717 CTGACCGTACTCCACCGCG 62.679 68.421 0.00 0.00 0.00 6.46
170 171 2.181021 CTGACCGTACTCCACCGC 59.819 66.667 0.00 0.00 0.00 5.68
171 172 1.239296 TGACTGACCGTACTCCACCG 61.239 60.000 0.00 0.00 0.00 4.94
172 173 0.963962 TTGACTGACCGTACTCCACC 59.036 55.000 0.00 0.00 0.00 4.61
173 174 2.029290 ACATTGACTGACCGTACTCCAC 60.029 50.000 0.00 0.00 0.00 4.02
174 175 2.244695 ACATTGACTGACCGTACTCCA 58.755 47.619 0.00 0.00 0.00 3.86
175 176 4.445452 TTACATTGACTGACCGTACTCC 57.555 45.455 0.00 0.00 0.00 3.85
176 177 6.672357 GCAATTTACATTGACTGACCGTACTC 60.672 42.308 5.78 0.00 42.35 2.59
177 178 5.121768 GCAATTTACATTGACTGACCGTACT 59.878 40.000 5.78 0.00 42.35 2.73
178 179 5.121768 AGCAATTTACATTGACTGACCGTAC 59.878 40.000 5.78 0.00 42.35 3.67
179 180 5.242434 AGCAATTTACATTGACTGACCGTA 58.758 37.500 5.78 0.00 42.35 4.02
180 181 4.072131 AGCAATTTACATTGACTGACCGT 58.928 39.130 5.78 0.00 42.35 4.83
181 182 4.685169 AGCAATTTACATTGACTGACCG 57.315 40.909 5.78 0.00 42.35 4.79
182 183 7.023575 CACTTAGCAATTTACATTGACTGACC 58.976 38.462 5.78 0.00 42.35 4.02
183 184 6.524586 GCACTTAGCAATTTACATTGACTGAC 59.475 38.462 5.78 0.00 42.35 3.51
184 185 6.611381 GCACTTAGCAATTTACATTGACTGA 58.389 36.000 5.78 0.00 42.35 3.41
185 186 6.859715 GCACTTAGCAATTTACATTGACTG 57.140 37.500 5.78 0.00 42.35 3.51
200 201 2.478134 CTGTTCTCTGTGTGCACTTAGC 59.522 50.000 19.41 6.38 45.96 3.09
201 202 3.982475 TCTGTTCTCTGTGTGCACTTAG 58.018 45.455 19.41 15.55 0.00 2.18
202 203 4.607293 ATCTGTTCTCTGTGTGCACTTA 57.393 40.909 19.41 5.91 0.00 2.24
203 204 2.988010 TCTGTTCTCTGTGTGCACTT 57.012 45.000 19.41 0.00 0.00 3.16
204 205 3.397482 GAATCTGTTCTCTGTGTGCACT 58.603 45.455 19.41 0.00 0.00 4.40
205 206 2.156504 CGAATCTGTTCTCTGTGTGCAC 59.843 50.000 10.75 10.75 32.00 4.57
206 207 2.407090 CGAATCTGTTCTCTGTGTGCA 58.593 47.619 0.00 0.00 32.00 4.57
207 208 1.728971 CCGAATCTGTTCTCTGTGTGC 59.271 52.381 0.00 0.00 32.00 4.57
208 209 3.032017 ACCGAATCTGTTCTCTGTGTG 57.968 47.619 0.00 0.00 32.00 3.82
209 210 3.753294 AACCGAATCTGTTCTCTGTGT 57.247 42.857 0.00 0.00 32.00 3.72
210 211 4.627467 CCTTAACCGAATCTGTTCTCTGTG 59.373 45.833 0.00 0.00 32.00 3.66
211 212 4.822026 CCTTAACCGAATCTGTTCTCTGT 58.178 43.478 0.00 0.00 32.00 3.41
212 213 3.619038 GCCTTAACCGAATCTGTTCTCTG 59.381 47.826 0.00 0.00 32.00 3.35
213 214 3.515901 AGCCTTAACCGAATCTGTTCTCT 59.484 43.478 0.00 0.00 32.00 3.10
214 215 3.863041 AGCCTTAACCGAATCTGTTCTC 58.137 45.455 0.00 0.00 32.00 2.87
215 216 3.983044 AGCCTTAACCGAATCTGTTCT 57.017 42.857 0.00 0.00 32.00 3.01
216 217 3.556365 GCTAGCCTTAACCGAATCTGTTC 59.444 47.826 2.29 0.00 0.00 3.18
217 218 3.532542 GCTAGCCTTAACCGAATCTGTT 58.467 45.455 2.29 0.00 0.00 3.16
218 219 2.158943 GGCTAGCCTTAACCGAATCTGT 60.159 50.000 27.17 0.00 0.00 3.41
219 220 2.484889 GGCTAGCCTTAACCGAATCTG 58.515 52.381 27.17 0.00 0.00 2.90
220 221 2.912690 GGCTAGCCTTAACCGAATCT 57.087 50.000 27.17 0.00 0.00 2.40
226 227 3.747854 ATCTAACGGCTAGCCTTAACC 57.252 47.619 30.55 4.19 0.00 2.85
227 228 4.690122 TCAATCTAACGGCTAGCCTTAAC 58.310 43.478 30.55 4.97 0.00 2.01
228 229 4.404715 ACTCAATCTAACGGCTAGCCTTAA 59.595 41.667 30.55 14.50 0.00 1.85
229 230 3.958798 ACTCAATCTAACGGCTAGCCTTA 59.041 43.478 30.55 23.50 0.00 2.69
230 231 2.766828 ACTCAATCTAACGGCTAGCCTT 59.233 45.455 30.55 23.63 0.00 4.35
231 232 2.389715 ACTCAATCTAACGGCTAGCCT 58.610 47.619 30.55 16.25 0.00 4.58
232 233 2.892784 ACTCAATCTAACGGCTAGCC 57.107 50.000 24.75 24.75 0.00 3.93
233 234 5.232414 CACTAAACTCAATCTAACGGCTAGC 59.768 44.000 6.04 6.04 0.00 3.42
234 235 5.749109 CCACTAAACTCAATCTAACGGCTAG 59.251 44.000 0.00 0.00 0.00 3.42
235 236 5.394883 CCCACTAAACTCAATCTAACGGCTA 60.395 44.000 0.00 0.00 0.00 3.93
236 237 4.504858 CCACTAAACTCAATCTAACGGCT 58.495 43.478 0.00 0.00 0.00 5.52
237 238 3.621715 CCCACTAAACTCAATCTAACGGC 59.378 47.826 0.00 0.00 0.00 5.68
238 239 4.868734 GTCCCACTAAACTCAATCTAACGG 59.131 45.833 0.00 0.00 0.00 4.44
239 240 5.721232 AGTCCCACTAAACTCAATCTAACG 58.279 41.667 0.00 0.00 0.00 3.18
240 241 9.315525 GATTAGTCCCACTAAACTCAATCTAAC 57.684 37.037 0.37 0.00 43.16 2.34
241 242 9.042450 TGATTAGTCCCACTAAACTCAATCTAA 57.958 33.333 0.37 0.00 43.16 2.10
242 243 8.603898 TGATTAGTCCCACTAAACTCAATCTA 57.396 34.615 0.37 0.00 43.16 1.98
243 244 7.496346 TGATTAGTCCCACTAAACTCAATCT 57.504 36.000 0.37 0.00 43.16 2.40
244 245 7.254932 GCATGATTAGTCCCACTAAACTCAATC 60.255 40.741 0.00 0.00 43.16 2.67
245 246 6.543831 GCATGATTAGTCCCACTAAACTCAAT 59.456 38.462 0.00 0.00 43.16 2.57
246 247 5.880332 GCATGATTAGTCCCACTAAACTCAA 59.120 40.000 0.00 0.00 43.16 3.02
247 248 5.428253 GCATGATTAGTCCCACTAAACTCA 58.572 41.667 0.00 2.10 43.16 3.41
248 249 4.508124 CGCATGATTAGTCCCACTAAACTC 59.492 45.833 0.00 0.00 43.16 3.01
249 250 4.442706 CGCATGATTAGTCCCACTAAACT 58.557 43.478 0.00 0.00 43.16 2.66
250 251 3.560068 CCGCATGATTAGTCCCACTAAAC 59.440 47.826 0.00 0.00 43.16 2.01
251 252 3.199071 ACCGCATGATTAGTCCCACTAAA 59.801 43.478 0.00 0.00 43.16 1.85
252 253 2.769663 ACCGCATGATTAGTCCCACTAA 59.230 45.455 0.00 0.00 43.95 2.24
253 254 2.102420 CACCGCATGATTAGTCCCACTA 59.898 50.000 0.00 0.00 0.00 2.74
254 255 1.134401 CACCGCATGATTAGTCCCACT 60.134 52.381 0.00 0.00 0.00 4.00
255 256 1.299541 CACCGCATGATTAGTCCCAC 58.700 55.000 0.00 0.00 0.00 4.61
256 257 0.180171 CCACCGCATGATTAGTCCCA 59.820 55.000 0.00 0.00 0.00 4.37
257 258 0.180406 ACCACCGCATGATTAGTCCC 59.820 55.000 0.00 0.00 0.00 4.46
258 259 2.902705 TACCACCGCATGATTAGTCC 57.097 50.000 0.00 0.00 0.00 3.85
259 260 4.127171 ACATTACCACCGCATGATTAGTC 58.873 43.478 0.00 0.00 0.00 2.59
260 261 4.150897 ACATTACCACCGCATGATTAGT 57.849 40.909 0.00 0.00 0.00 2.24
261 262 5.351465 GGATACATTACCACCGCATGATTAG 59.649 44.000 0.00 0.00 0.00 1.73
262 263 5.242434 GGATACATTACCACCGCATGATTA 58.758 41.667 0.00 0.00 0.00 1.75
263 264 4.072131 GGATACATTACCACCGCATGATT 58.928 43.478 0.00 0.00 0.00 2.57
264 265 3.674997 GGATACATTACCACCGCATGAT 58.325 45.455 0.00 0.00 0.00 2.45
265 266 2.547007 CGGATACATTACCACCGCATGA 60.547 50.000 0.00 0.00 37.32 3.07
266 267 1.798223 CGGATACATTACCACCGCATG 59.202 52.381 0.00 0.00 37.32 4.06
267 268 1.414919 ACGGATACATTACCACCGCAT 59.585 47.619 0.00 0.00 46.18 4.73
268 269 0.825410 ACGGATACATTACCACCGCA 59.175 50.000 0.00 0.00 46.18 5.69
269 270 1.214367 CACGGATACATTACCACCGC 58.786 55.000 0.00 0.00 46.18 5.68
271 272 4.952460 ACATACACGGATACATTACCACC 58.048 43.478 0.00 0.00 0.00 4.61
272 273 6.913873 AAACATACACGGATACATTACCAC 57.086 37.500 0.00 0.00 0.00 4.16
273 274 6.879993 ACAAAACATACACGGATACATTACCA 59.120 34.615 0.00 0.00 0.00 3.25
274 275 7.311364 ACAAAACATACACGGATACATTACC 57.689 36.000 0.00 0.00 0.00 2.85
275 276 9.910511 CTTACAAAACATACACGGATACATTAC 57.089 33.333 0.00 0.00 0.00 1.89
276 277 9.100554 CCTTACAAAACATACACGGATACATTA 57.899 33.333 0.00 0.00 0.00 1.90
277 278 7.608761 ACCTTACAAAACATACACGGATACATT 59.391 33.333 0.00 0.00 0.00 2.71
278 279 7.065324 CACCTTACAAAACATACACGGATACAT 59.935 37.037 0.00 0.00 0.00 2.29
279 280 6.369340 CACCTTACAAAACATACACGGATACA 59.631 38.462 0.00 0.00 0.00 2.29
280 281 6.673796 GCACCTTACAAAACATACACGGATAC 60.674 42.308 0.00 0.00 0.00 2.24
281 282 5.352016 GCACCTTACAAAACATACACGGATA 59.648 40.000 0.00 0.00 0.00 2.59
282 283 4.155280 GCACCTTACAAAACATACACGGAT 59.845 41.667 0.00 0.00 0.00 4.18
283 284 3.499157 GCACCTTACAAAACATACACGGA 59.501 43.478 0.00 0.00 0.00 4.69
284 285 3.251245 TGCACCTTACAAAACATACACGG 59.749 43.478 0.00 0.00 0.00 4.94
285 286 4.024387 AGTGCACCTTACAAAACATACACG 60.024 41.667 14.63 0.00 0.00 4.49
286 287 5.432885 AGTGCACCTTACAAAACATACAC 57.567 39.130 14.63 0.00 0.00 2.90
287 288 6.993308 TCTAAGTGCACCTTACAAAACATACA 59.007 34.615 14.63 0.00 34.46 2.29
288 289 7.386848 TCTCTAAGTGCACCTTACAAAACATAC 59.613 37.037 14.63 0.00 34.46 2.39
289 290 7.446769 TCTCTAAGTGCACCTTACAAAACATA 58.553 34.615 14.63 0.00 34.46 2.29
290 291 6.296026 TCTCTAAGTGCACCTTACAAAACAT 58.704 36.000 14.63 0.00 34.46 2.71
291 292 5.676552 TCTCTAAGTGCACCTTACAAAACA 58.323 37.500 14.63 0.00 34.46 2.83
292 293 6.482308 TCTTCTCTAAGTGCACCTTACAAAAC 59.518 38.462 14.63 0.00 34.46 2.43
293 294 6.588204 TCTTCTCTAAGTGCACCTTACAAAA 58.412 36.000 14.63 0.00 34.46 2.44
294 295 6.169557 TCTTCTCTAAGTGCACCTTACAAA 57.830 37.500 14.63 1.17 34.46 2.83
295 296 5.801531 TCTTCTCTAAGTGCACCTTACAA 57.198 39.130 14.63 0.00 34.46 2.41
296 297 7.476540 TTATCTTCTCTAAGTGCACCTTACA 57.523 36.000 14.63 0.00 34.46 2.41
297 298 7.982354 ACATTATCTTCTCTAAGTGCACCTTAC 59.018 37.037 14.63 0.00 34.46 2.34
298 299 8.079211 ACATTATCTTCTCTAAGTGCACCTTA 57.921 34.615 14.63 10.47 34.46 2.69
299 300 6.951971 ACATTATCTTCTCTAAGTGCACCTT 58.048 36.000 14.63 9.84 37.17 3.50
300 301 6.552445 ACATTATCTTCTCTAAGTGCACCT 57.448 37.500 14.63 2.32 34.13 4.00
301 302 7.467623 CAAACATTATCTTCTCTAAGTGCACC 58.532 38.462 14.63 0.00 34.13 5.01
302 303 6.963805 GCAAACATTATCTTCTCTAAGTGCAC 59.036 38.462 9.40 9.40 34.13 4.57
303 304 6.881065 AGCAAACATTATCTTCTCTAAGTGCA 59.119 34.615 0.00 0.00 34.13 4.57
304 305 7.313951 AGCAAACATTATCTTCTCTAAGTGC 57.686 36.000 0.00 0.00 34.13 4.40
336 337 9.012161 CCGTCCTAGCTTTAATCTATACTACTT 57.988 37.037 0.00 0.00 0.00 2.24
337 338 8.381636 TCCGTCCTAGCTTTAATCTATACTACT 58.618 37.037 0.00 0.00 0.00 2.57
338 339 8.450180 GTCCGTCCTAGCTTTAATCTATACTAC 58.550 40.741 0.00 0.00 0.00 2.73
339 340 7.609532 GGTCCGTCCTAGCTTTAATCTATACTA 59.390 40.741 0.00 0.00 0.00 1.82
340 341 6.433716 GGTCCGTCCTAGCTTTAATCTATACT 59.566 42.308 0.00 0.00 0.00 2.12
341 342 6.350027 GGGTCCGTCCTAGCTTTAATCTATAC 60.350 46.154 0.00 0.00 36.25 1.47
342 343 5.713861 GGGTCCGTCCTAGCTTTAATCTATA 59.286 44.000 0.00 0.00 36.25 1.31
343 344 4.527427 GGGTCCGTCCTAGCTTTAATCTAT 59.473 45.833 0.00 0.00 36.25 1.98
344 345 3.893813 GGGTCCGTCCTAGCTTTAATCTA 59.106 47.826 0.00 0.00 36.25 1.98
345 346 2.699321 GGGTCCGTCCTAGCTTTAATCT 59.301 50.000 0.00 0.00 36.25 2.40
346 347 2.699321 AGGGTCCGTCCTAGCTTTAATC 59.301 50.000 0.00 0.00 34.92 1.75
347 348 2.760581 AGGGTCCGTCCTAGCTTTAAT 58.239 47.619 0.00 0.00 34.92 1.40
383 384 2.622962 GCTCATGTGCAGTGCAGCA 61.623 57.895 20.42 19.16 40.08 4.41
400 401 0.743701 CCATGAGTGGTCTGCTCTGC 60.744 60.000 0.00 0.00 40.83 4.26
401 402 3.455328 CCATGAGTGGTCTGCTCTG 57.545 57.895 0.00 0.00 40.83 3.35
464 465 5.725110 AAGATTCGACTGATGATTTTCCG 57.275 39.130 0.00 0.00 0.00 4.30
499 500 0.042188 GTGTGTTGTGTGTAGCTGCG 60.042 55.000 0.00 0.00 0.00 5.18
535 538 0.456995 CGACGCCTCTCTGTTTCTCC 60.457 60.000 0.00 0.00 0.00 3.71
555 558 3.267860 GCGGCAGCTGAGGAATCG 61.268 66.667 20.43 11.22 41.01 3.34
593 596 4.680237 CGGTGAGGCTGGAACGCA 62.680 66.667 0.00 0.00 0.00 5.24
626 773 1.090625 AGAGACGGAGATGGACGACG 61.091 60.000 0.00 0.00 0.00 5.12
640 787 2.760385 ACCAGGGCGGCTAGAGAC 60.760 66.667 9.56 0.00 39.03 3.36
658 805 0.671251 GTAGAGGACGGCTGAGATGG 59.329 60.000 0.00 0.00 0.00 3.51
667 814 1.210967 AGAGAGACTGGTAGAGGACGG 59.789 57.143 0.00 0.00 0.00 4.79
671 818 2.136298 TGCAGAGAGACTGGTAGAGG 57.864 55.000 0.00 0.00 45.82 3.69
679 826 3.482156 TCAAAGCTTTGCAGAGAGACT 57.518 42.857 30.35 0.00 38.05 3.24
692 839 3.004734 CCTTCGGACAAACAATCAAAGCT 59.995 43.478 0.00 0.00 0.00 3.74
696 843 6.642707 AATTACCTTCGGACAAACAATCAA 57.357 33.333 0.00 0.00 0.00 2.57
698 845 6.581166 GTGAAATTACCTTCGGACAAACAATC 59.419 38.462 0.00 0.00 0.00 2.67
700 847 5.591067 AGTGAAATTACCTTCGGACAAACAA 59.409 36.000 0.00 0.00 0.00 2.83
709 856 4.154195 CCAGTGGAAGTGAAATTACCTTCG 59.846 45.833 1.68 0.00 40.62 3.79
725 872 0.986019 ACAACAGGTGGACCAGTGGA 60.986 55.000 18.40 0.00 35.80 4.02
731 878 3.284617 ACTAAACAACAACAGGTGGACC 58.715 45.455 0.00 0.00 0.00 4.46
755 902 3.452990 TGTTCACAGAACAGGTGGAAGTA 59.547 43.478 8.39 0.00 36.90 2.24
769 916 8.655092 ACAACAACAATTTTGTAATGTTCACAG 58.345 29.630 9.45 3.87 39.04 3.66
779 926 8.142994 ACAACAACAACAACAACAATTTTGTA 57.857 26.923 0.00 0.00 41.31 2.41
827 977 9.884465 GATTACAACCAATTAAGATCAGCATAC 57.116 33.333 0.00 0.00 0.00 2.39
842 992 7.167535 TGAGTGAGATGAATGATTACAACCAA 58.832 34.615 0.00 0.00 0.00 3.67
845 995 7.065563 AGCTTGAGTGAGATGAATGATTACAAC 59.934 37.037 0.00 0.00 0.00 3.32
894 1044 7.151999 TCACTATGTGTTTGTTTGTTGTTCT 57.848 32.000 0.00 0.00 34.79 3.01
913 1063 2.920524 CTACGAAGGCTCTCCTCACTA 58.079 52.381 0.00 0.00 43.40 2.74
940 1090 1.141657 TGCTGGGTGGAAGATATCAGC 59.858 52.381 5.32 3.77 45.28 4.26
944 1094 2.706190 GGTAGTGCTGGGTGGAAGATAT 59.294 50.000 0.00 0.00 0.00 1.63
1048 1198 3.088532 TGAACTCACCAACAAGCAGTTT 58.911 40.909 0.00 0.00 38.74 2.66
1062 1212 0.603569 GCTTCTCGAGGGTGAACTCA 59.396 55.000 13.56 0.00 37.34 3.41
1083 1233 2.367567 AGACTCCACGCCTTTCTTAACA 59.632 45.455 0.00 0.00 0.00 2.41
1086 1236 2.526432 AGAGACTCCACGCCTTTCTTA 58.474 47.619 0.00 0.00 0.00 2.10
1161 1311 0.809241 CTTCATCGAGCTGGTCTGCC 60.809 60.000 5.23 0.00 0.00 4.85
1258 1408 0.393537 GGCTCACCACCATCTTCCAG 60.394 60.000 0.00 0.00 35.26 3.86
1263 1413 0.252696 TGGTAGGCTCACCACCATCT 60.253 55.000 2.71 0.00 43.76 2.90
1272 1422 1.440618 TCTTTGGGTTGGTAGGCTCA 58.559 50.000 0.00 0.00 0.00 4.26
1297 1447 4.213059 GGTCTTCTTGAGCAACTTCTTGAG 59.787 45.833 0.00 0.00 42.34 3.02
1371 1521 5.296780 CCTAGCTTGAACAAACACTTCTTCA 59.703 40.000 0.00 0.00 0.00 3.02
1522 1672 2.289631 ACATGCCGATCAACTTGTCTCA 60.290 45.455 0.00 0.00 0.00 3.27
1538 1688 4.707030 TCATCACCTTCATTCAACATGC 57.293 40.909 0.00 0.00 0.00 4.06
1547 1697 3.912496 TCGACCAATCATCACCTTCAT 57.088 42.857 0.00 0.00 0.00 2.57
1590 1740 1.323412 TCCCACCAAATCCAACAACG 58.677 50.000 0.00 0.00 0.00 4.10
1591 1741 2.028203 CCATCCCACCAAATCCAACAAC 60.028 50.000 0.00 0.00 0.00 3.32
1845 1995 9.382244 GCTATTAGCAAAGAATTGTTATAACCG 57.618 33.333 13.01 0.00 41.89 4.44
1933 2083 7.178983 AGTGATGAGATAAAGGGAAAAATGCAA 59.821 33.333 0.00 0.00 0.00 4.08
2113 2264 3.619483 TGTCGTGATTAATTTACTGCCGG 59.381 43.478 0.00 0.00 0.00 6.13
2114 2265 4.850859 TGTCGTGATTAATTTACTGCCG 57.149 40.909 0.00 0.00 0.00 5.69
2251 2402 2.904434 TCTTTAGGACACCCTTCCTCAC 59.096 50.000 0.00 0.00 42.98 3.51
2288 2439 7.094248 CCACCACATTTCTTCAAGATGTATTCA 60.094 37.037 0.00 0.00 33.03 2.57
2292 2443 5.875224 TCCACCACATTTCTTCAAGATGTA 58.125 37.500 0.00 0.00 33.03 2.29
2429 2580 1.044790 TCATCTCCTCCATGCTGCGA 61.045 55.000 0.00 0.00 0.00 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.