Multiple sequence alignment - TraesCS3A01G477500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G477500 chr3A 100.000 3356 0 0 1 3356 709189053 709192408 0.000000e+00 6198
1 TraesCS3A01G477500 chr3A 85.651 1589 202 12 900 2482 709162890 709164458 0.000000e+00 1648
2 TraesCS3A01G477500 chr3A 89.474 152 14 2 3196 3346 709220228 709220378 1.230000e-44 191
3 TraesCS3A01G477500 chr3A 82.353 153 18 3 468 619 23812284 23812428 1.260000e-24 124
4 TraesCS3A01G477500 chr3D 92.221 2944 133 39 30 2958 574237663 574240525 0.000000e+00 4080
5 TraesCS3A01G477500 chr3D 87.164 1488 167 14 917 2399 574228697 574230165 0.000000e+00 1668
6 TraesCS3A01G477500 chrUn 94.258 2264 90 20 685 2937 41228747 41226513 0.000000e+00 3424
7 TraesCS3A01G477500 chrUn 87.690 1511 178 6 974 2482 183979788 183981292 0.000000e+00 1753
8 TraesCS3A01G477500 chrUn 88.724 674 61 8 1 663 41229404 41228735 0.000000e+00 809
9 TraesCS3A01G477500 chr7A 89.881 672 29 7 672 1336 728375820 728375181 0.000000e+00 828
10 TraesCS3A01G477500 chr7A 86.240 516 41 9 114 627 728376807 728376320 1.770000e-147 532
11 TraesCS3A01G477500 chr7A 94.118 68 4 0 1269 1336 658723815 658723882 1.650000e-18 104
12 TraesCS3A01G477500 chr7A 92.647 68 5 0 1269 1336 576382486 576382419 7.660000e-17 99
13 TraesCS3A01G477500 chr2D 92.192 333 21 2 940 1267 348004074 348004406 1.820000e-127 466
14 TraesCS3A01G477500 chr2D 85.199 277 25 6 559 835 348003794 348004054 1.530000e-68 270
15 TraesCS3A01G477500 chr2D 95.146 103 4 1 404 505 635135973 635136075 9.640000e-36 161
16 TraesCS3A01G477500 chr2D 93.333 75 5 0 1262 1336 348066343 348066417 9.840000e-21 111
17 TraesCS3A01G477500 chr2A 84.615 442 50 10 2050 2482 526303190 526303622 1.110000e-114 424
18 TraesCS3A01G477500 chr2B 94.175 103 5 1 404 505 215601557 215601455 4.480000e-34 156
19 TraesCS3A01G477500 chr7D 92.453 106 4 1 404 505 477179805 477179910 7.500000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G477500 chr3A 709189053 709192408 3355 False 6198.0 6198 100.0000 1 3356 1 chr3A.!!$F3 3355
1 TraesCS3A01G477500 chr3A 709162890 709164458 1568 False 1648.0 1648 85.6510 900 2482 1 chr3A.!!$F2 1582
2 TraesCS3A01G477500 chr3D 574237663 574240525 2862 False 4080.0 4080 92.2210 30 2958 1 chr3D.!!$F2 2928
3 TraesCS3A01G477500 chr3D 574228697 574230165 1468 False 1668.0 1668 87.1640 917 2399 1 chr3D.!!$F1 1482
4 TraesCS3A01G477500 chrUn 41226513 41229404 2891 True 2116.5 3424 91.4910 1 2937 2 chrUn.!!$R1 2936
5 TraesCS3A01G477500 chrUn 183979788 183981292 1504 False 1753.0 1753 87.6900 974 2482 1 chrUn.!!$F1 1508
6 TraesCS3A01G477500 chr7A 728375181 728376807 1626 True 680.0 828 88.0605 114 1336 2 chr7A.!!$R2 1222
7 TraesCS3A01G477500 chr2D 348003794 348004406 612 False 368.0 466 88.6955 559 1267 2 chr2D.!!$F3 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 158 0.904865 TGAGTGCTGGGTCTGTAGGG 60.905 60.000 0.0 0.0 0.00 3.53 F
161 166 1.062428 TGGGTCTGTAGGGTGATAGGG 60.062 57.143 0.0 0.0 0.00 3.53 F
293 298 1.228657 GCTTCGCTTTGGTCGAGGTT 61.229 55.000 0.0 0.0 37.26 3.50 F
2280 2772 0.466372 GCTTTGGTGGGATAGGAGGC 60.466 60.000 0.0 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1617 2109 3.874873 CGTTTCTCCATGCGCAGA 58.125 55.556 18.32 7.83 0.00 4.26 R
1908 2400 6.023603 ACTTATCTCCTCAAAGTACTTCCCA 58.976 40.000 8.95 0.00 31.84 4.37 R
2283 2775 0.895530 CCTCAACCTGGTAGCGAAGA 59.104 55.000 0.00 0.00 0.00 2.87 R
3265 3767 0.037303 ACAGTAGTTGCATGCAGCCT 59.963 50.000 28.22 24.31 44.83 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 1.937223 TCTGAACGTCGTGTGCATTTT 59.063 42.857 0.00 0.00 34.87 1.82
106 107 2.159503 TGAACGTCGTGTGCATTTTGTT 60.160 40.909 0.00 0.00 28.14 2.83
109 110 2.181205 CGTCGTGTGCATTTTGTTGTT 58.819 42.857 0.00 0.00 0.00 2.83
110 111 3.181509 ACGTCGTGTGCATTTTGTTGTTA 60.182 39.130 0.00 0.00 0.00 2.41
111 112 3.971871 CGTCGTGTGCATTTTGTTGTTAT 59.028 39.130 0.00 0.00 0.00 1.89
112 113 5.140872 CGTCGTGTGCATTTTGTTGTTATA 58.859 37.500 0.00 0.00 0.00 0.98
153 158 0.904865 TGAGTGCTGGGTCTGTAGGG 60.905 60.000 0.00 0.00 0.00 3.53
155 160 1.194781 AGTGCTGGGTCTGTAGGGTG 61.195 60.000 0.00 0.00 0.00 4.61
161 166 1.062428 TGGGTCTGTAGGGTGATAGGG 60.062 57.143 0.00 0.00 0.00 3.53
174 179 2.171448 GTGATAGGGCCATCAACTCTGT 59.829 50.000 16.74 0.00 36.71 3.41
266 271 8.729756 TGTTTCATGTTGTTGGTAGAATAGATG 58.270 33.333 0.00 0.00 0.00 2.90
293 298 1.228657 GCTTCGCTTTGGTCGAGGTT 61.229 55.000 0.00 0.00 37.26 3.50
311 316 5.313712 GAGGTTGATTTCACAGGGAGTAAA 58.686 41.667 0.00 0.00 0.00 2.01
359 367 4.543689 ACATGGAAGATGATGGATTTGCT 58.456 39.130 0.00 0.00 0.00 3.91
362 370 4.346730 TGGAAGATGATGGATTTGCTGTT 58.653 39.130 0.00 0.00 0.00 3.16
384 392 7.093992 TGTTCGATTGTTTGAAAGACCTTTTT 58.906 30.769 0.00 0.00 32.11 1.94
386 394 5.518487 TCGATTGTTTGAAAGACCTTTTTGC 59.482 36.000 0.00 0.00 32.11 3.68
412 420 5.815233 ATTATGCAGCTGGTAGTATCAGT 57.185 39.130 17.12 0.00 34.89 3.41
421 429 5.068460 AGCTGGTAGTATCAGTCATCTCAAC 59.932 44.000 12.04 0.00 34.89 3.18
513 522 5.105146 TGGTTTAACTGGTTCTGCATTTGTT 60.105 36.000 0.00 0.00 0.00 2.83
521 530 4.391216 TGGTTCTGCATTTGTTGTTTTGTG 59.609 37.500 0.00 0.00 0.00 3.33
522 531 4.333615 GTTCTGCATTTGTTGTTTTGTGC 58.666 39.130 0.00 0.00 0.00 4.57
523 532 2.602211 TCTGCATTTGTTGTTTTGTGCG 59.398 40.909 0.00 0.00 35.46 5.34
534 543 2.480802 TGTTTTGTGCGTACATGCGTAT 59.519 40.909 7.30 0.00 36.53 3.06
613 625 4.159506 TGTTTGTCCTAAAATATGCCAGGC 59.840 41.667 3.66 3.66 0.00 4.85
616 628 3.459598 TGTCCTAAAATATGCCAGGCTCT 59.540 43.478 14.15 2.36 0.00 4.09
621 633 4.778213 AAAATATGCCAGGCTCTGTCTA 57.222 40.909 14.15 0.00 0.00 2.59
683 1150 5.767168 CCATGTCCTATTGAAGAAGATTCCC 59.233 44.000 0.00 0.00 0.00 3.97
776 1243 6.080648 TGCCATGATTCTCTTTGATTATGC 57.919 37.500 0.00 0.00 0.00 3.14
786 1253 7.307493 TCTCTTTGATTATGCATGTGTACAC 57.693 36.000 19.36 19.36 0.00 2.90
858 1325 3.798337 CCTGTTCAGCATTTGTTTGTGTC 59.202 43.478 0.00 0.00 0.00 3.67
870 1338 8.550376 GCATTTGTTTGTGTCATTTACTTTCAT 58.450 29.630 0.00 0.00 0.00 2.57
882 1350 7.324616 GTCATTTACTTTCATGACTGCAAGAAC 59.675 37.037 11.03 0.00 44.07 3.01
938 1409 7.496346 TGATGTATTCCTACTTCTGTTCCTT 57.504 36.000 0.00 0.00 34.62 3.36
1308 1800 3.006430 TGAAGCTGTACAATCGAGTTCCA 59.994 43.478 0.00 0.00 0.00 3.53
1593 2085 1.522580 GAAGCATGGACGAGGAGGC 60.523 63.158 0.00 0.00 0.00 4.70
1617 2109 3.660111 GCACTTCGCTTTGCCCGT 61.660 61.111 0.00 0.00 37.77 5.28
1908 2400 6.492772 AGTTCATCCAAGAAAAGAAGCTGATT 59.507 34.615 0.00 0.00 0.00 2.57
1932 2424 6.023603 TGGGAAGTACTTTGAGGAGATAAGT 58.976 40.000 10.02 0.00 36.23 2.24
2212 2704 1.106351 TCGGCAGTTTGGTTGCACAT 61.106 50.000 0.00 0.00 43.28 3.21
2280 2772 0.466372 GCTTTGGTGGGATAGGAGGC 60.466 60.000 0.00 0.00 0.00 4.70
2283 2775 1.607225 TTGGTGGGATAGGAGGCATT 58.393 50.000 0.00 0.00 0.00 3.56
2424 2917 4.973055 CGGAACCGGAACACGCCA 62.973 66.667 9.46 0.00 42.52 5.69
2497 2990 0.101759 GTACCGAATCGTGCCAGCTA 59.898 55.000 0.82 0.00 0.00 3.32
2503 2996 1.929836 GAATCGTGCCAGCTACTCTTG 59.070 52.381 0.00 0.00 0.00 3.02
2505 2998 0.038251 TCGTGCCAGCTACTCTTGTG 60.038 55.000 0.00 0.00 0.00 3.33
2511 3004 2.093973 GCCAGCTACTCTTGTGCTCTTA 60.094 50.000 0.00 0.00 34.51 2.10
2513 3006 4.202161 GCCAGCTACTCTTGTGCTCTTATA 60.202 45.833 0.00 0.00 34.51 0.98
2524 3024 8.948631 TCTTGTGCTCTTATATACAAAGGAAG 57.051 34.615 0.00 0.00 33.19 3.46
2559 3059 5.863935 GTGTTCCCTTTGCTAATGTTTGATC 59.136 40.000 0.00 0.00 0.00 2.92
2679 3179 3.022406 GAGGAAGGCTGCATTTCTGATT 58.978 45.455 13.26 0.00 0.00 2.57
2686 3186 4.514441 AGGCTGCATTTCTGATTTCTATCG 59.486 41.667 0.50 0.00 33.23 2.92
2805 3305 6.153680 TCTGTTAAGTTTGTGGGTCATTGTTT 59.846 34.615 0.00 0.00 0.00 2.83
2855 3355 4.713553 TCTGAACCAAAGTTGTGATGCTA 58.286 39.130 0.00 0.00 35.94 3.49
2856 3356 5.316167 TCTGAACCAAAGTTGTGATGCTAT 58.684 37.500 0.00 0.00 35.94 2.97
2859 3359 5.181811 TGAACCAAAGTTGTGATGCTATCAG 59.818 40.000 0.00 0.00 36.71 2.90
2868 3368 6.317140 AGTTGTGATGCTATCAGTACATTTGG 59.683 38.462 0.00 0.00 40.53 3.28
2879 3379 5.242434 TCAGTACATTTGGACGTGCTATTT 58.758 37.500 8.99 0.00 0.00 1.40
2881 3381 3.848272 ACATTTGGACGTGCTATTTGG 57.152 42.857 8.99 0.00 0.00 3.28
2942 3444 8.700051 AGATAAATCTGTGTGCTATGTACTCTT 58.300 33.333 0.00 0.00 35.42 2.85
2943 3445 8.879342 ATAAATCTGTGTGCTATGTACTCTTC 57.121 34.615 0.00 0.00 0.00 2.87
2944 3446 6.537453 AATCTGTGTGCTATGTACTCTTCT 57.463 37.500 0.00 0.00 0.00 2.85
2945 3447 5.984695 TCTGTGTGCTATGTACTCTTCTT 57.015 39.130 0.00 0.00 0.00 2.52
2946 3448 5.955488 TCTGTGTGCTATGTACTCTTCTTC 58.045 41.667 0.00 0.00 0.00 2.87
2947 3449 5.476945 TCTGTGTGCTATGTACTCTTCTTCA 59.523 40.000 0.00 0.00 0.00 3.02
2948 3450 6.153510 TCTGTGTGCTATGTACTCTTCTTCAT 59.846 38.462 0.00 0.00 0.00 2.57
2949 3451 6.101997 TGTGTGCTATGTACTCTTCTTCATG 58.898 40.000 0.00 0.00 0.00 3.07
2950 3452 6.102663 GTGTGCTATGTACTCTTCTTCATGT 58.897 40.000 0.00 0.00 0.00 3.21
2951 3453 7.093945 TGTGTGCTATGTACTCTTCTTCATGTA 60.094 37.037 0.00 0.00 0.00 2.29
2952 3454 7.923344 GTGTGCTATGTACTCTTCTTCATGTAT 59.077 37.037 0.00 0.00 0.00 2.29
2953 3455 7.922811 TGTGCTATGTACTCTTCTTCATGTATG 59.077 37.037 0.00 0.00 0.00 2.39
2958 3460 5.874810 TGTACTCTTCTTCATGTATGGTTGC 59.125 40.000 0.00 0.00 0.00 4.17
2959 3461 5.171339 ACTCTTCTTCATGTATGGTTGCT 57.829 39.130 0.00 0.00 0.00 3.91
2960 3462 5.181748 ACTCTTCTTCATGTATGGTTGCTC 58.818 41.667 0.00 0.00 0.00 4.26
2961 3463 5.164620 TCTTCTTCATGTATGGTTGCTCA 57.835 39.130 0.00 0.00 0.00 4.26
2962 3464 5.181009 TCTTCTTCATGTATGGTTGCTCAG 58.819 41.667 0.00 0.00 0.00 3.35
2963 3465 3.877559 TCTTCATGTATGGTTGCTCAGG 58.122 45.455 0.00 0.00 0.00 3.86
2964 3466 2.042686 TCATGTATGGTTGCTCAGGC 57.957 50.000 0.00 0.00 39.26 4.85
2965 3467 0.659427 CATGTATGGTTGCTCAGGCG 59.341 55.000 0.00 0.00 42.25 5.52
2966 3468 0.541392 ATGTATGGTTGCTCAGGCGA 59.459 50.000 0.00 0.00 42.25 5.54
2967 3469 0.108186 TGTATGGTTGCTCAGGCGAG 60.108 55.000 0.00 2.61 42.25 5.03
2968 3470 0.108138 GTATGGTTGCTCAGGCGAGT 60.108 55.000 7.88 0.00 41.71 4.18
2969 3471 0.108186 TATGGTTGCTCAGGCGAGTG 60.108 55.000 7.88 0.00 41.71 3.51
2970 3472 1.830587 ATGGTTGCTCAGGCGAGTGA 61.831 55.000 7.88 0.00 41.71 3.41
2971 3473 1.301716 GGTTGCTCAGGCGAGTGAA 60.302 57.895 7.88 0.62 41.71 3.18
2972 3474 0.884704 GGTTGCTCAGGCGAGTGAAA 60.885 55.000 7.88 0.11 41.71 2.69
2973 3475 0.235926 GTTGCTCAGGCGAGTGAAAC 59.764 55.000 7.88 6.93 41.71 2.78
2974 3476 1.221466 TTGCTCAGGCGAGTGAAACG 61.221 55.000 7.88 0.00 41.74 3.60
2975 3477 2.383527 GCTCAGGCGAGTGAAACGG 61.384 63.158 7.88 0.00 45.86 4.44
2976 3478 1.738099 CTCAGGCGAGTGAAACGGG 60.738 63.158 0.00 0.00 45.86 5.28
2977 3479 2.030562 CAGGCGAGTGAAACGGGT 59.969 61.111 0.00 0.00 45.86 5.28
2978 3480 2.030562 AGGCGAGTGAAACGGGTG 59.969 61.111 0.00 0.00 45.86 4.61
2979 3481 2.029964 GGCGAGTGAAACGGGTGA 59.970 61.111 0.00 0.00 45.86 4.02
2980 3482 2.027625 GGCGAGTGAAACGGGTGAG 61.028 63.158 0.00 0.00 45.86 3.51
2981 3483 1.300697 GCGAGTGAAACGGGTGAGT 60.301 57.895 0.00 0.00 45.86 3.41
2982 3484 1.557443 GCGAGTGAAACGGGTGAGTG 61.557 60.000 0.00 0.00 45.86 3.51
2983 3485 0.249322 CGAGTGAAACGGGTGAGTGT 60.249 55.000 0.00 0.00 45.86 3.55
2984 3486 1.805120 CGAGTGAAACGGGTGAGTGTT 60.805 52.381 0.00 0.00 45.86 3.32
2985 3487 2.285977 GAGTGAAACGGGTGAGTGTTT 58.714 47.619 0.00 0.00 45.86 2.83
3001 3503 4.330250 AGTGTTTCACTCATCATCCTTGG 58.670 43.478 0.00 0.00 41.21 3.61
3002 3504 3.084039 TGTTTCACTCATCATCCTTGGC 58.916 45.455 0.00 0.00 0.00 4.52
3003 3505 2.028420 TTCACTCATCATCCTTGGCG 57.972 50.000 0.00 0.00 0.00 5.69
3004 3506 1.194218 TCACTCATCATCCTTGGCGA 58.806 50.000 0.00 0.00 0.00 5.54
3005 3507 1.134699 TCACTCATCATCCTTGGCGAC 60.135 52.381 0.00 0.00 0.00 5.19
3006 3508 1.134580 CACTCATCATCCTTGGCGACT 60.135 52.381 0.00 0.00 0.00 4.18
3007 3509 1.134580 ACTCATCATCCTTGGCGACTG 60.135 52.381 0.00 0.00 0.00 3.51
3008 3510 0.904649 TCATCATCCTTGGCGACTGT 59.095 50.000 0.00 0.00 0.00 3.55
3009 3511 1.134699 TCATCATCCTTGGCGACTGTC 60.135 52.381 0.00 0.00 0.00 3.51
3010 3512 0.179100 ATCATCCTTGGCGACTGTCG 60.179 55.000 24.78 24.78 43.89 4.35
3011 3513 1.079819 CATCCTTGGCGACTGTCGT 60.080 57.895 28.38 6.73 42.81 4.34
3012 3514 1.079819 ATCCTTGGCGACTGTCGTG 60.080 57.895 28.38 16.67 42.81 4.35
3013 3515 3.414700 CCTTGGCGACTGTCGTGC 61.415 66.667 28.38 14.56 42.81 5.34
3014 3516 2.661537 CTTGGCGACTGTCGTGCA 60.662 61.111 28.38 13.19 42.81 4.57
3015 3517 2.943345 CTTGGCGACTGTCGTGCAC 61.943 63.158 28.38 17.48 42.81 4.57
3016 3518 3.724914 TTGGCGACTGTCGTGCACA 62.725 57.895 28.38 19.50 42.81 4.57
3017 3519 3.702555 GGCGACTGTCGTGCACAC 61.703 66.667 28.38 14.25 42.81 3.82
3018 3520 2.658593 GCGACTGTCGTGCACACT 60.659 61.111 28.38 0.00 42.81 3.55
3019 3521 2.932083 GCGACTGTCGTGCACACTG 61.932 63.158 28.38 18.22 42.81 3.66
3020 3522 1.299089 CGACTGTCGTGCACACTGA 60.299 57.895 21.30 2.91 34.72 3.41
3021 3523 0.869880 CGACTGTCGTGCACACTGAA 60.870 55.000 21.30 0.00 34.72 3.02
3022 3524 0.855349 GACTGTCGTGCACACTGAAG 59.145 55.000 18.64 8.86 0.00 3.02
3023 3525 0.459899 ACTGTCGTGCACACTGAAGA 59.540 50.000 18.64 1.26 0.00 2.87
3024 3526 1.069204 ACTGTCGTGCACACTGAAGAT 59.931 47.619 18.64 0.54 0.00 2.40
3025 3527 1.723542 CTGTCGTGCACACTGAAGATC 59.276 52.381 18.64 1.09 0.00 2.75
3026 3528 1.341209 TGTCGTGCACACTGAAGATCT 59.659 47.619 18.64 0.00 0.00 2.75
3027 3529 2.224042 TGTCGTGCACACTGAAGATCTT 60.224 45.455 18.64 7.95 0.00 2.40
3028 3530 2.802816 GTCGTGCACACTGAAGATCTTT 59.197 45.455 18.64 0.00 0.00 2.52
3029 3531 2.802247 TCGTGCACACTGAAGATCTTTG 59.198 45.455 18.64 6.75 0.00 2.77
3030 3532 2.663879 CGTGCACACTGAAGATCTTTGC 60.664 50.000 18.64 18.15 0.00 3.68
3031 3533 2.551459 GTGCACACTGAAGATCTTTGCT 59.449 45.455 22.94 0.00 0.00 3.91
3032 3534 2.551032 TGCACACTGAAGATCTTTGCTG 59.449 45.455 22.94 14.66 0.00 4.41
3033 3535 2.810274 GCACACTGAAGATCTTTGCTGA 59.190 45.455 17.84 0.00 0.00 4.26
3034 3536 3.120269 GCACACTGAAGATCTTTGCTGAG 60.120 47.826 17.84 9.73 0.00 3.35
3035 3537 3.072944 ACACTGAAGATCTTTGCTGAGC 58.927 45.455 9.87 0.00 0.00 4.26
3036 3538 3.072211 CACTGAAGATCTTTGCTGAGCA 58.928 45.455 9.87 1.40 36.47 4.26
3037 3539 3.690139 CACTGAAGATCTTTGCTGAGCAT 59.310 43.478 8.44 0.00 38.76 3.79
3038 3540 3.940221 ACTGAAGATCTTTGCTGAGCATC 59.060 43.478 8.44 2.24 38.76 3.91
3051 3553 3.908643 TGAGCATCAGAGCTTCAAGAT 57.091 42.857 0.00 0.00 46.75 2.40
3052 3554 4.217836 TGAGCATCAGAGCTTCAAGATT 57.782 40.909 0.00 0.00 46.75 2.40
3053 3555 4.190001 TGAGCATCAGAGCTTCAAGATTC 58.810 43.478 0.00 0.00 46.75 2.52
3054 3556 3.543665 AGCATCAGAGCTTCAAGATTCC 58.456 45.455 0.00 0.00 43.70 3.01
3055 3557 3.200385 AGCATCAGAGCTTCAAGATTCCT 59.800 43.478 0.00 0.00 43.70 3.36
3056 3558 3.312973 GCATCAGAGCTTCAAGATTCCTG 59.687 47.826 0.00 0.00 0.00 3.86
3057 3559 4.767478 CATCAGAGCTTCAAGATTCCTGA 58.233 43.478 0.00 0.00 34.29 3.86
3058 3560 4.897509 TCAGAGCTTCAAGATTCCTGAA 57.102 40.909 0.00 0.00 0.00 3.02
3059 3561 4.829968 TCAGAGCTTCAAGATTCCTGAAG 58.170 43.478 17.21 17.21 41.23 3.02
3064 3566 3.415212 CTTCAAGATTCCTGAAGCACCA 58.585 45.455 11.14 0.00 33.69 4.17
3065 3567 3.726557 TCAAGATTCCTGAAGCACCAT 57.273 42.857 0.00 0.00 0.00 3.55
3066 3568 3.349927 TCAAGATTCCTGAAGCACCATG 58.650 45.455 0.00 0.00 0.00 3.66
3067 3569 3.087031 CAAGATTCCTGAAGCACCATGT 58.913 45.455 0.00 0.00 0.00 3.21
3068 3570 2.719739 AGATTCCTGAAGCACCATGTG 58.280 47.619 0.00 0.00 36.51 3.21
3078 3580 3.768633 CACCATGTGCTACTCCCTC 57.231 57.895 0.00 0.00 0.00 4.30
3079 3581 0.179000 CACCATGTGCTACTCCCTCC 59.821 60.000 0.00 0.00 0.00 4.30
3080 3582 1.330655 ACCATGTGCTACTCCCTCCG 61.331 60.000 0.00 0.00 0.00 4.63
3081 3583 1.330655 CCATGTGCTACTCCCTCCGT 61.331 60.000 0.00 0.00 0.00 4.69
3082 3584 0.103208 CATGTGCTACTCCCTCCGTC 59.897 60.000 0.00 0.00 0.00 4.79
3083 3585 1.043673 ATGTGCTACTCCCTCCGTCC 61.044 60.000 0.00 0.00 0.00 4.79
3084 3586 2.439701 TGCTACTCCCTCCGTCCG 60.440 66.667 0.00 0.00 0.00 4.79
3085 3587 3.217743 GCTACTCCCTCCGTCCGG 61.218 72.222 0.00 0.00 0.00 5.14
3086 3588 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
3087 3589 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
3088 3590 0.467659 CTACTCCCTCCGTCCGGAAT 60.468 60.000 5.23 0.00 44.66 3.01
3089 3591 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
3090 3592 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
3091 3593 0.674534 CTCCCTCCGTCCGGAATTAG 59.325 60.000 5.23 3.15 44.66 1.73
3092 3594 0.032813 TCCCTCCGTCCGGAATTAGT 60.033 55.000 5.23 0.00 44.66 2.24
3093 3595 0.828677 CCCTCCGTCCGGAATTAGTT 59.171 55.000 5.23 0.00 44.66 2.24
3094 3596 1.472728 CCCTCCGTCCGGAATTAGTTG 60.473 57.143 5.23 0.00 44.66 3.16
3095 3597 1.287425 CTCCGTCCGGAATTAGTTGC 58.713 55.000 5.23 0.00 44.66 4.17
3096 3598 0.108041 TCCGTCCGGAATTAGTTGCC 60.108 55.000 5.23 0.00 42.05 4.52
3097 3599 1.426041 CCGTCCGGAATTAGTTGCCG 61.426 60.000 5.23 1.25 44.42 5.69
3098 3600 1.719709 GTCCGGAATTAGTTGCCGC 59.280 57.895 5.23 0.00 43.52 6.53
3099 3601 0.743345 GTCCGGAATTAGTTGCCGCT 60.743 55.000 5.23 0.00 43.52 5.52
3100 3602 0.461339 TCCGGAATTAGTTGCCGCTC 60.461 55.000 0.00 0.00 43.52 5.03
3101 3603 0.742990 CCGGAATTAGTTGCCGCTCA 60.743 55.000 0.00 0.00 43.52 4.26
3102 3604 1.083489 CGGAATTAGTTGCCGCTCAA 58.917 50.000 0.00 0.00 38.46 3.02
3103 3605 1.466950 CGGAATTAGTTGCCGCTCAAA 59.533 47.619 0.00 0.00 38.46 2.69
3104 3606 2.727916 CGGAATTAGTTGCCGCTCAAAC 60.728 50.000 0.00 0.00 38.46 2.93
3105 3607 2.505866 GAATTAGTTGCCGCTCAAACG 58.494 47.619 0.00 0.00 36.26 3.60
3116 3618 2.607187 CGCTCAAACGGATGTAGAAGT 58.393 47.619 0.00 0.00 0.00 3.01
3117 3619 3.766151 CGCTCAAACGGATGTAGAAGTA 58.234 45.455 0.00 0.00 0.00 2.24
3118 3620 4.360563 CGCTCAAACGGATGTAGAAGTAT 58.639 43.478 0.00 0.00 0.00 2.12
3119 3621 4.207224 CGCTCAAACGGATGTAGAAGTATG 59.793 45.833 0.00 0.00 0.00 2.39
3120 3622 4.508124 GCTCAAACGGATGTAGAAGTATGG 59.492 45.833 0.00 0.00 0.00 2.74
3121 3623 5.681437 GCTCAAACGGATGTAGAAGTATGGA 60.681 44.000 0.00 0.00 0.00 3.41
3122 3624 6.479972 TCAAACGGATGTAGAAGTATGGAT 57.520 37.500 0.00 0.00 0.00 3.41
3123 3625 6.280643 TCAAACGGATGTAGAAGTATGGATG 58.719 40.000 0.00 0.00 0.00 3.51
3124 3626 5.871396 AACGGATGTAGAAGTATGGATGT 57.129 39.130 0.00 0.00 0.00 3.06
3125 3627 5.201713 ACGGATGTAGAAGTATGGATGTG 57.798 43.478 0.00 0.00 0.00 3.21
3126 3628 4.893524 ACGGATGTAGAAGTATGGATGTGA 59.106 41.667 0.00 0.00 0.00 3.58
3127 3629 5.221263 ACGGATGTAGAAGTATGGATGTGAC 60.221 44.000 0.00 0.00 0.00 3.67
3128 3630 5.010112 CGGATGTAGAAGTATGGATGTGACT 59.990 44.000 0.00 0.00 0.00 3.41
3129 3631 6.206829 CGGATGTAGAAGTATGGATGTGACTA 59.793 42.308 0.00 0.00 0.00 2.59
3130 3632 7.255486 CGGATGTAGAAGTATGGATGTGACTAA 60.255 40.741 0.00 0.00 0.00 2.24
3131 3633 8.085296 GGATGTAGAAGTATGGATGTGACTAAG 58.915 40.741 0.00 0.00 0.00 2.18
3132 3634 8.768501 ATGTAGAAGTATGGATGTGACTAAGA 57.231 34.615 0.00 0.00 0.00 2.10
3133 3635 8.768501 TGTAGAAGTATGGATGTGACTAAGAT 57.231 34.615 0.00 0.00 0.00 2.40
3134 3636 9.862149 TGTAGAAGTATGGATGTGACTAAGATA 57.138 33.333 0.00 0.00 0.00 1.98
3138 3640 9.262358 GAAGTATGGATGTGACTAAGATAAACC 57.738 37.037 0.00 0.00 0.00 3.27
3139 3641 8.319057 AGTATGGATGTGACTAAGATAAACCA 57.681 34.615 0.00 0.00 0.00 3.67
3140 3642 8.204836 AGTATGGATGTGACTAAGATAAACCAC 58.795 37.037 0.00 0.00 0.00 4.16
3141 3643 6.367374 TGGATGTGACTAAGATAAACCACA 57.633 37.500 0.00 0.00 38.63 4.17
3142 3644 6.774673 TGGATGTGACTAAGATAAACCACAA 58.225 36.000 0.00 0.00 37.93 3.33
3143 3645 6.878923 TGGATGTGACTAAGATAAACCACAAG 59.121 38.462 0.00 0.00 37.93 3.16
3144 3646 6.316390 GGATGTGACTAAGATAAACCACAAGG 59.684 42.308 0.00 0.00 37.93 3.61
3145 3647 6.428083 TGTGACTAAGATAAACCACAAGGA 57.572 37.500 0.00 0.00 38.69 3.36
3146 3648 7.016153 TGTGACTAAGATAAACCACAAGGAT 57.984 36.000 0.00 0.00 38.69 3.24
3147 3649 6.878923 TGTGACTAAGATAAACCACAAGGATG 59.121 38.462 0.00 0.00 38.69 3.51
3148 3650 7.103641 GTGACTAAGATAAACCACAAGGATGA 58.896 38.462 0.00 0.00 38.69 2.92
3149 3651 7.606456 GTGACTAAGATAAACCACAAGGATGAA 59.394 37.037 0.00 0.00 38.69 2.57
3150 3652 8.328758 TGACTAAGATAAACCACAAGGATGAAT 58.671 33.333 0.00 0.00 38.69 2.57
3151 3653 8.738645 ACTAAGATAAACCACAAGGATGAATC 57.261 34.615 0.00 0.00 38.69 2.52
3152 3654 8.328758 ACTAAGATAAACCACAAGGATGAATCA 58.671 33.333 0.00 0.00 38.69 2.57
3153 3655 9.347240 CTAAGATAAACCACAAGGATGAATCAT 57.653 33.333 0.00 0.00 38.69 2.45
3154 3656 8.599624 AAGATAAACCACAAGGATGAATCATT 57.400 30.769 0.00 0.00 38.69 2.57
3155 3657 9.699410 AAGATAAACCACAAGGATGAATCATTA 57.301 29.630 0.00 0.00 38.69 1.90
3156 3658 9.872684 AGATAAACCACAAGGATGAATCATTAT 57.127 29.630 0.00 0.00 38.69 1.28
3160 3662 9.439500 AAACCACAAGGATGAATCATTATTTTG 57.561 29.630 0.00 3.34 38.69 2.44
3161 3663 8.365060 ACCACAAGGATGAATCATTATTTTGA 57.635 30.769 0.00 0.00 38.69 2.69
3162 3664 8.814931 ACCACAAGGATGAATCATTATTTTGAA 58.185 29.630 0.00 0.00 38.69 2.69
3163 3665 9.826574 CCACAAGGATGAATCATTATTTTGAAT 57.173 29.630 0.00 0.00 36.89 2.57
3182 3684 9.434420 TTTTGAATTTCCTGCTAATAACAATGG 57.566 29.630 0.00 0.00 0.00 3.16
3183 3685 7.953005 TGAATTTCCTGCTAATAACAATGGA 57.047 32.000 0.00 0.00 0.00 3.41
3184 3686 7.771183 TGAATTTCCTGCTAATAACAATGGAC 58.229 34.615 0.00 0.00 0.00 4.02
3185 3687 7.615365 TGAATTTCCTGCTAATAACAATGGACT 59.385 33.333 0.00 0.00 0.00 3.85
3186 3688 7.573968 ATTTCCTGCTAATAACAATGGACTC 57.426 36.000 0.00 0.00 0.00 3.36
3187 3689 5.692115 TCCTGCTAATAACAATGGACTCA 57.308 39.130 0.00 0.00 0.00 3.41
3188 3690 6.061022 TCCTGCTAATAACAATGGACTCAA 57.939 37.500 0.00 0.00 0.00 3.02
3189 3691 5.880332 TCCTGCTAATAACAATGGACTCAAC 59.120 40.000 0.00 0.00 0.00 3.18
3190 3692 5.882557 CCTGCTAATAACAATGGACTCAACT 59.117 40.000 0.00 0.00 0.00 3.16
3191 3693 7.047891 CCTGCTAATAACAATGGACTCAACTA 58.952 38.462 0.00 0.00 0.00 2.24
3192 3694 7.716998 CCTGCTAATAACAATGGACTCAACTAT 59.283 37.037 0.00 0.00 0.00 2.12
3193 3695 8.437360 TGCTAATAACAATGGACTCAACTATG 57.563 34.615 0.00 0.00 0.00 2.23
3194 3696 8.046708 TGCTAATAACAATGGACTCAACTATGT 58.953 33.333 0.00 0.00 0.00 2.29
3195 3697 9.542462 GCTAATAACAATGGACTCAACTATGTA 57.458 33.333 0.00 0.00 0.00 2.29
3201 3703 9.520515 AACAATGGACTCAACTATGTATTTCTT 57.479 29.630 0.00 0.00 0.00 2.52
3202 3704 9.167311 ACAATGGACTCAACTATGTATTTCTTC 57.833 33.333 0.00 0.00 0.00 2.87
3203 3705 9.388506 CAATGGACTCAACTATGTATTTCTTCT 57.611 33.333 0.00 0.00 0.00 2.85
3221 3723 9.799106 ATTTCTTCTATTGTTTCTTGAAGGAGA 57.201 29.630 0.00 0.00 35.98 3.71
3222 3724 8.839310 TTCTTCTATTGTTTCTTGAAGGAGAG 57.161 34.615 0.00 0.00 35.98 3.20
3223 3725 7.390027 TCTTCTATTGTTTCTTGAAGGAGAGG 58.610 38.462 0.00 0.00 35.98 3.69
3224 3726 6.688073 TCTATTGTTTCTTGAAGGAGAGGT 57.312 37.500 0.00 0.00 0.00 3.85
3225 3727 7.792364 TCTATTGTTTCTTGAAGGAGAGGTA 57.208 36.000 0.00 0.00 0.00 3.08
3226 3728 8.202461 TCTATTGTTTCTTGAAGGAGAGGTAA 57.798 34.615 0.00 0.00 0.00 2.85
3227 3729 8.314751 TCTATTGTTTCTTGAAGGAGAGGTAAG 58.685 37.037 0.00 0.00 0.00 2.34
3228 3730 4.642429 TGTTTCTTGAAGGAGAGGTAAGC 58.358 43.478 0.00 0.00 0.00 3.09
3229 3731 3.983044 TTCTTGAAGGAGAGGTAAGCC 57.017 47.619 0.00 0.00 0.00 4.35
3230 3732 2.188817 TCTTGAAGGAGAGGTAAGCCC 58.811 52.381 0.00 0.00 34.57 5.19
3232 3734 1.573108 TGAAGGAGAGGTAAGCCCTG 58.427 55.000 0.00 0.00 46.51 4.45
3233 3735 1.078823 TGAAGGAGAGGTAAGCCCTGA 59.921 52.381 0.00 0.00 46.51 3.86
3234 3736 1.483004 GAAGGAGAGGTAAGCCCTGAC 59.517 57.143 0.00 0.00 46.51 3.51
3235 3737 0.713579 AGGAGAGGTAAGCCCTGACT 59.286 55.000 0.00 0.00 46.51 3.41
3236 3738 1.116308 GGAGAGGTAAGCCCTGACTC 58.884 60.000 0.00 0.00 46.51 3.36
3237 3739 1.342574 GGAGAGGTAAGCCCTGACTCT 60.343 57.143 0.00 0.00 46.51 3.24
3238 3740 2.462723 GAGAGGTAAGCCCTGACTCTT 58.537 52.381 0.00 0.00 46.51 2.85
3239 3741 3.627747 GGAGAGGTAAGCCCTGACTCTTA 60.628 52.174 0.00 0.00 46.51 2.10
3240 3742 4.024670 GAGAGGTAAGCCCTGACTCTTAA 58.975 47.826 0.00 0.00 46.51 1.85
3241 3743 3.770388 AGAGGTAAGCCCTGACTCTTAAC 59.230 47.826 0.00 0.00 46.51 2.01
3242 3744 2.496470 AGGTAAGCCCTGACTCTTAACG 59.504 50.000 0.00 0.00 44.08 3.18
3243 3745 2.418334 GGTAAGCCCTGACTCTTAACGG 60.418 54.545 0.00 0.00 0.00 4.44
3244 3746 1.640917 AAGCCCTGACTCTTAACGGA 58.359 50.000 0.00 0.00 0.00 4.69
3245 3747 1.640917 AGCCCTGACTCTTAACGGAA 58.359 50.000 0.00 0.00 0.00 4.30
3246 3748 1.275573 AGCCCTGACTCTTAACGGAAC 59.724 52.381 0.00 0.00 0.00 3.62
3247 3749 1.001633 GCCCTGACTCTTAACGGAACA 59.998 52.381 0.00 0.00 0.00 3.18
3248 3750 2.931320 GCCCTGACTCTTAACGGAACAG 60.931 54.545 0.00 0.00 0.00 3.16
3249 3751 2.561419 CCCTGACTCTTAACGGAACAGA 59.439 50.000 0.00 0.00 0.00 3.41
3250 3752 3.367498 CCCTGACTCTTAACGGAACAGAG 60.367 52.174 0.00 0.00 40.08 3.35
3251 3753 3.367498 CCTGACTCTTAACGGAACAGAGG 60.367 52.174 0.00 0.00 38.76 3.69
3252 3754 3.228453 TGACTCTTAACGGAACAGAGGT 58.772 45.455 7.74 0.00 38.76 3.85
3253 3755 3.255149 TGACTCTTAACGGAACAGAGGTC 59.745 47.826 7.74 0.00 38.76 3.85
3254 3756 3.498334 ACTCTTAACGGAACAGAGGTCT 58.502 45.455 7.74 0.00 38.76 3.85
3255 3757 4.660168 ACTCTTAACGGAACAGAGGTCTA 58.340 43.478 7.74 0.00 38.76 2.59
3256 3758 4.458642 ACTCTTAACGGAACAGAGGTCTAC 59.541 45.833 7.74 0.00 38.76 2.59
3257 3759 4.401022 TCTTAACGGAACAGAGGTCTACA 58.599 43.478 0.00 0.00 0.00 2.74
3258 3760 4.828939 TCTTAACGGAACAGAGGTCTACAA 59.171 41.667 0.00 0.00 0.00 2.41
3259 3761 5.302568 TCTTAACGGAACAGAGGTCTACAAA 59.697 40.000 0.00 0.00 0.00 2.83
3260 3762 4.411256 AACGGAACAGAGGTCTACAAAA 57.589 40.909 0.00 0.00 0.00 2.44
3261 3763 3.991367 ACGGAACAGAGGTCTACAAAAG 58.009 45.455 0.00 0.00 0.00 2.27
3262 3764 2.737252 CGGAACAGAGGTCTACAAAAGC 59.263 50.000 0.00 0.00 0.00 3.51
3263 3765 3.075148 GGAACAGAGGTCTACAAAAGCC 58.925 50.000 0.00 0.00 0.00 4.35
3264 3766 2.861147 ACAGAGGTCTACAAAAGCCC 57.139 50.000 0.00 0.00 0.00 5.19
3265 3767 2.054799 ACAGAGGTCTACAAAAGCCCA 58.945 47.619 0.00 0.00 0.00 5.36
3266 3768 2.039084 ACAGAGGTCTACAAAAGCCCAG 59.961 50.000 0.00 0.00 0.00 4.45
3267 3769 1.630878 AGAGGTCTACAAAAGCCCAGG 59.369 52.381 0.00 0.00 0.00 4.45
3268 3770 0.038310 AGGTCTACAAAAGCCCAGGC 59.962 55.000 0.00 0.00 42.33 4.85
3278 3780 4.446413 GCCCAGGCTGCATGCAAC 62.446 66.667 22.88 17.73 45.15 4.17
3279 3781 2.678934 CCCAGGCTGCATGCAACT 60.679 61.111 22.88 19.23 45.15 3.16
3280 3782 1.378911 CCCAGGCTGCATGCAACTA 60.379 57.895 22.88 0.00 45.15 2.24
3281 3783 1.660560 CCCAGGCTGCATGCAACTAC 61.661 60.000 22.88 11.72 45.15 2.73
3282 3784 0.679002 CCAGGCTGCATGCAACTACT 60.679 55.000 22.88 13.81 45.15 2.57
3283 3785 0.450583 CAGGCTGCATGCAACTACTG 59.549 55.000 22.88 20.73 45.15 2.74
3284 3786 0.037303 AGGCTGCATGCAACTACTGT 59.963 50.000 22.88 0.00 45.15 3.55
3285 3787 0.449388 GGCTGCATGCAACTACTGTC 59.551 55.000 22.88 6.52 45.15 3.51
3286 3788 0.095935 GCTGCATGCAACTACTGTCG 59.904 55.000 22.88 7.64 42.31 4.35
3287 3789 0.723414 CTGCATGCAACTACTGTCGG 59.277 55.000 22.88 1.53 0.00 4.79
3288 3790 1.298157 TGCATGCAACTACTGTCGGC 61.298 55.000 20.30 0.00 0.00 5.54
3289 3791 1.298157 GCATGCAACTACTGTCGGCA 61.298 55.000 14.21 0.00 39.51 5.69
3300 3802 0.508641 CTGTCGGCAGTTTCAGAACG 59.491 55.000 9.39 0.00 40.75 3.95
3301 3803 0.878523 TGTCGGCAGTTTCAGAACGG 60.879 55.000 0.00 0.00 40.75 4.44
3302 3804 0.599204 GTCGGCAGTTTCAGAACGGA 60.599 55.000 0.00 0.00 40.75 4.69
3303 3805 0.105224 TCGGCAGTTTCAGAACGGAA 59.895 50.000 0.00 0.00 40.75 4.30
3304 3806 0.941542 CGGCAGTTTCAGAACGGAAA 59.058 50.000 0.00 0.00 40.75 3.13
3305 3807 1.332375 CGGCAGTTTCAGAACGGAAAA 59.668 47.619 2.21 0.00 40.75 2.29
3306 3808 2.727777 GGCAGTTTCAGAACGGAAAAC 58.272 47.619 2.21 0.00 40.75 2.43
3307 3809 2.543031 GGCAGTTTCAGAACGGAAAACC 60.543 50.000 2.21 2.12 40.75 3.27
3308 3810 2.098443 GCAGTTTCAGAACGGAAAACCA 59.902 45.455 2.21 0.00 40.75 3.67
3309 3811 3.243401 GCAGTTTCAGAACGGAAAACCAT 60.243 43.478 2.21 0.00 40.75 3.55
3310 3812 4.736464 GCAGTTTCAGAACGGAAAACCATT 60.736 41.667 2.21 0.00 40.75 3.16
3311 3813 4.976116 CAGTTTCAGAACGGAAAACCATTC 59.024 41.667 2.21 0.00 40.75 2.67
3312 3814 4.642885 AGTTTCAGAACGGAAAACCATTCA 59.357 37.500 0.00 0.00 40.75 2.57
3313 3815 5.126384 AGTTTCAGAACGGAAAACCATTCAA 59.874 36.000 0.00 0.00 40.75 2.69
3314 3816 5.782893 TTCAGAACGGAAAACCATTCAAT 57.217 34.783 0.00 0.00 0.00 2.57
3315 3817 5.782893 TCAGAACGGAAAACCATTCAATT 57.217 34.783 0.00 0.00 0.00 2.32
3316 3818 6.155475 TCAGAACGGAAAACCATTCAATTT 57.845 33.333 0.00 0.00 0.00 1.82
3317 3819 7.278461 TCAGAACGGAAAACCATTCAATTTA 57.722 32.000 0.00 0.00 0.00 1.40
3318 3820 7.891561 TCAGAACGGAAAACCATTCAATTTAT 58.108 30.769 0.00 0.00 0.00 1.40
3319 3821 8.364142 TCAGAACGGAAAACCATTCAATTTATT 58.636 29.630 0.00 0.00 0.00 1.40
3320 3822 8.647226 CAGAACGGAAAACCATTCAATTTATTC 58.353 33.333 0.00 0.00 0.00 1.75
3321 3823 8.585018 AGAACGGAAAACCATTCAATTTATTCT 58.415 29.630 0.00 0.00 0.00 2.40
3322 3824 9.203421 GAACGGAAAACCATTCAATTTATTCTT 57.797 29.630 0.00 0.00 0.00 2.52
3324 3826 9.634163 ACGGAAAACCATTCAATTTATTCTTAC 57.366 29.630 0.00 0.00 0.00 2.34
3325 3827 8.794406 CGGAAAACCATTCAATTTATTCTTACG 58.206 33.333 0.00 0.00 0.00 3.18
3326 3828 9.849166 GGAAAACCATTCAATTTATTCTTACGA 57.151 29.630 0.00 0.00 0.00 3.43
3339 3841 8.776680 TTTATTCTTACGAAAGTTCAGTTTGC 57.223 30.769 0.00 0.00 46.40 3.68
3340 3842 4.806342 TCTTACGAAAGTTCAGTTTGCC 57.194 40.909 0.00 0.00 46.40 4.52
3341 3843 4.193090 TCTTACGAAAGTTCAGTTTGCCA 58.807 39.130 0.00 0.00 46.40 4.92
3342 3844 4.819630 TCTTACGAAAGTTCAGTTTGCCAT 59.180 37.500 0.00 0.00 46.40 4.40
3343 3845 3.354089 ACGAAAGTTCAGTTTGCCATG 57.646 42.857 0.00 0.00 46.40 3.66
3344 3846 2.053627 CGAAAGTTCAGTTTGCCATGC 58.946 47.619 0.00 0.00 0.00 4.06
3345 3847 2.287788 CGAAAGTTCAGTTTGCCATGCT 60.288 45.455 0.00 0.00 0.00 3.79
3346 3848 2.806608 AAGTTCAGTTTGCCATGCTG 57.193 45.000 0.00 0.00 0.00 4.41
3347 3849 0.316204 AGTTCAGTTTGCCATGCTGC 59.684 50.000 0.00 0.00 0.00 5.25
3348 3850 0.316204 GTTCAGTTTGCCATGCTGCT 59.684 50.000 0.00 0.00 0.00 4.24
3349 3851 0.599558 TTCAGTTTGCCATGCTGCTC 59.400 50.000 0.00 0.00 0.00 4.26
3350 3852 0.537828 TCAGTTTGCCATGCTGCTCA 60.538 50.000 0.00 0.00 0.00 4.26
3351 3853 0.109272 CAGTTTGCCATGCTGCTCAG 60.109 55.000 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 6.800543 TGAAAATTCAAACATGAGTCGGAAA 58.199 32.000 0.00 0.00 33.55 3.13
20 21 4.618489 GCTGAAAATTCAAACATGAGTCGG 59.382 41.667 0.00 0.00 36.64 4.79
23 24 6.480981 CCAAAGCTGAAAATTCAAACATGAGT 59.519 34.615 0.00 0.00 36.64 3.41
81 82 0.032130 ATGCACACGACGTTCAGAGT 59.968 50.000 0.00 0.00 0.00 3.24
110 111 9.845740 TCAAATGCATAACCAACAGTAGTATAT 57.154 29.630 0.00 0.00 0.00 0.86
111 112 9.325198 CTCAAATGCATAACCAACAGTAGTATA 57.675 33.333 0.00 0.00 0.00 1.47
112 113 7.829211 ACTCAAATGCATAACCAACAGTAGTAT 59.171 33.333 0.00 0.00 0.00 2.12
153 158 2.171448 ACAGAGTTGATGGCCCTATCAC 59.829 50.000 5.27 2.36 36.84 3.06
155 160 3.471680 GAACAGAGTTGATGGCCCTATC 58.528 50.000 0.00 0.00 0.00 2.08
161 166 1.808945 CAGTGGAACAGAGTTGATGGC 59.191 52.381 0.00 0.00 41.80 4.40
174 179 4.097286 GCTCAACCAGTTAAAACAGTGGAA 59.903 41.667 7.83 0.00 33.95 3.53
233 238 1.620822 ACAACATGAAACAGGGGAGC 58.379 50.000 0.00 0.00 0.00 4.70
359 367 5.828299 AAGGTCTTTCAAACAATCGAACA 57.172 34.783 0.00 0.00 0.00 3.18
362 370 5.518487 GCAAAAAGGTCTTTCAAACAATCGA 59.482 36.000 0.00 0.00 31.45 3.59
386 394 7.821359 ACTGATACTACCAGCTGCATAATAATG 59.179 37.037 8.66 0.00 35.14 1.90
513 522 0.658368 ACGCATGTACGCACAAAACA 59.342 45.000 0.00 0.00 38.42 2.83
521 530 1.480205 ACGGTTATACGCATGTACGC 58.520 50.000 0.00 0.00 37.37 4.42
522 531 5.164158 GGATTTACGGTTATACGCATGTACG 60.164 44.000 0.00 0.00 37.37 3.67
523 532 5.691305 TGGATTTACGGTTATACGCATGTAC 59.309 40.000 0.00 0.00 37.37 2.90
683 1150 3.945285 ACGGTTCCAATGGCACTAAATAG 59.055 43.478 1.55 0.00 0.00 1.73
747 1214 7.843490 ATCAAAGAGAATCATGGCAAAATTG 57.157 32.000 0.00 0.00 37.82 2.32
749 1216 9.542462 CATAATCAAAGAGAATCATGGCAAAAT 57.458 29.630 0.00 0.00 37.82 1.82
750 1217 7.493320 GCATAATCAAAGAGAATCATGGCAAAA 59.507 33.333 0.00 0.00 37.82 2.44
760 1227 8.400947 GTGTACACATGCATAATCAAAGAGAAT 58.599 33.333 21.14 0.00 0.00 2.40
776 1243 9.663904 GCAAGTATTTATAATGGTGTACACATG 57.336 33.333 26.51 0.00 0.00 3.21
786 1253 8.362639 AGGAATTGCTGCAAGTATTTATAATGG 58.637 33.333 20.72 0.00 35.30 3.16
858 1325 6.303970 CGTTCTTGCAGTCATGAAAGTAAATG 59.696 38.462 0.00 0.00 42.14 2.32
870 1338 4.185394 TGTAACTTTCGTTCTTGCAGTCA 58.815 39.130 0.00 0.00 34.59 3.41
1308 1800 8.437575 CCAGTATAAAGTACTAATCCATTGGGT 58.562 37.037 2.09 0.00 34.93 4.51
1320 1812 6.379133 TCACGATGGTTCCAGTATAAAGTACT 59.621 38.462 0.00 0.00 0.00 2.73
1617 2109 3.874873 CGTTTCTCCATGCGCAGA 58.125 55.556 18.32 7.83 0.00 4.26
1908 2400 6.023603 ACTTATCTCCTCAAAGTACTTCCCA 58.976 40.000 8.95 0.00 31.84 4.37
1932 2424 7.416213 CCAAAAACATACTTTCCAGTGTCTTGA 60.416 37.037 0.00 0.00 34.06 3.02
2280 2772 2.932614 CTCAACCTGGTAGCGAAGAATG 59.067 50.000 0.00 0.00 0.00 2.67
2283 2775 0.895530 CCTCAACCTGGTAGCGAAGA 59.104 55.000 0.00 0.00 0.00 2.87
2483 2976 1.929836 CAAGAGTAGCTGGCACGATTC 59.070 52.381 0.00 0.00 0.00 2.52
2489 2982 0.036952 GAGCACAAGAGTAGCTGGCA 60.037 55.000 0.00 0.00 39.02 4.92
2497 2990 8.079211 TCCTTTGTATATAAGAGCACAAGAGT 57.921 34.615 0.00 0.00 32.86 3.24
2503 2996 5.470437 GGCCTTCCTTTGTATATAAGAGCAC 59.530 44.000 0.00 0.00 0.00 4.40
2505 2998 5.870706 AGGCCTTCCTTTGTATATAAGAGC 58.129 41.667 0.00 0.00 40.66 4.09
2524 3024 4.314961 CAAAGGGAACACAATTAAAGGCC 58.685 43.478 0.00 0.00 0.00 5.19
2530 3030 6.909550 ACATTAGCAAAGGGAACACAATTA 57.090 33.333 0.00 0.00 0.00 1.40
2531 3031 5.806654 ACATTAGCAAAGGGAACACAATT 57.193 34.783 0.00 0.00 0.00 2.32
2559 3059 3.054948 TCCCCCTAAAGTAACAACATCGG 60.055 47.826 0.00 0.00 0.00 4.18
2679 3179 2.160721 AGGGCAGTCTTCCGATAGAA 57.839 50.000 0.00 0.00 39.76 2.10
2686 3186 3.206964 GTGCTAAATAGGGCAGTCTTCC 58.793 50.000 0.00 0.00 39.22 3.46
2751 3251 5.367302 TCAAGACTCACATCAATGACACAA 58.633 37.500 0.00 0.00 0.00 3.33
2752 3252 4.959723 TCAAGACTCACATCAATGACACA 58.040 39.130 0.00 0.00 0.00 3.72
2760 3260 5.536538 ACAGACTAGTTCAAGACTCACATCA 59.463 40.000 0.00 0.00 39.86 3.07
2814 3314 6.491714 TCAGAGAAATAAAGGATAGCTGCT 57.508 37.500 7.57 7.57 0.00 4.24
2820 3320 9.807921 AACTTTGGTTCAGAGAAATAAAGGATA 57.192 29.630 15.32 0.00 0.00 2.59
2855 3355 3.334583 AGCACGTCCAAATGTACTGAT 57.665 42.857 0.00 0.00 0.00 2.90
2856 3356 2.831685 AGCACGTCCAAATGTACTGA 57.168 45.000 0.00 0.00 0.00 3.41
2859 3359 4.155280 ACCAAATAGCACGTCCAAATGTAC 59.845 41.667 0.00 0.00 0.00 2.90
2868 3368 3.581755 TGTGTCTACCAAATAGCACGTC 58.418 45.455 0.00 0.00 39.15 4.34
2942 3444 3.877559 CCTGAGCAACCATACATGAAGA 58.122 45.455 0.00 0.00 0.00 2.87
2943 3445 2.357009 GCCTGAGCAACCATACATGAAG 59.643 50.000 0.00 0.00 39.53 3.02
2944 3446 2.368439 GCCTGAGCAACCATACATGAA 58.632 47.619 0.00 0.00 39.53 2.57
2945 3447 1.743431 CGCCTGAGCAACCATACATGA 60.743 52.381 0.00 0.00 39.83 3.07
2946 3448 0.659427 CGCCTGAGCAACCATACATG 59.341 55.000 0.00 0.00 39.83 3.21
2947 3449 0.541392 TCGCCTGAGCAACCATACAT 59.459 50.000 0.00 0.00 39.83 2.29
2948 3450 0.108186 CTCGCCTGAGCAACCATACA 60.108 55.000 0.00 0.00 39.83 2.29
2949 3451 0.108138 ACTCGCCTGAGCAACCATAC 60.108 55.000 0.00 0.00 46.69 2.39
2950 3452 0.108186 CACTCGCCTGAGCAACCATA 60.108 55.000 0.00 0.00 46.69 2.74
2951 3453 1.376424 CACTCGCCTGAGCAACCAT 60.376 57.895 0.00 0.00 46.69 3.55
2952 3454 2.031012 CACTCGCCTGAGCAACCA 59.969 61.111 0.00 0.00 46.69 3.67
2953 3455 0.884704 TTTCACTCGCCTGAGCAACC 60.885 55.000 0.00 0.00 46.69 3.77
2959 3461 2.342279 CCCGTTTCACTCGCCTGA 59.658 61.111 0.00 0.00 0.00 3.86
2960 3462 2.030562 ACCCGTTTCACTCGCCTG 59.969 61.111 0.00 0.00 0.00 4.85
2961 3463 2.030562 CACCCGTTTCACTCGCCT 59.969 61.111 0.00 0.00 0.00 5.52
2962 3464 2.027625 CTCACCCGTTTCACTCGCC 61.028 63.158 0.00 0.00 0.00 5.54
2963 3465 1.300697 ACTCACCCGTTTCACTCGC 60.301 57.895 0.00 0.00 0.00 5.03
2964 3466 0.249322 ACACTCACCCGTTTCACTCG 60.249 55.000 0.00 0.00 0.00 4.18
2965 3467 1.949465 AACACTCACCCGTTTCACTC 58.051 50.000 0.00 0.00 0.00 3.51
2966 3468 2.285977 GAAACACTCACCCGTTTCACT 58.714 47.619 9.49 0.00 46.57 3.41
2967 3469 2.750301 GAAACACTCACCCGTTTCAC 57.250 50.000 9.49 0.00 46.57 3.18
2980 3482 3.119708 GCCAAGGATGATGAGTGAAACAC 60.120 47.826 0.00 0.00 41.43 3.32
2981 3483 3.084039 GCCAAGGATGATGAGTGAAACA 58.916 45.455 0.00 0.00 41.43 2.83
2982 3484 2.096496 CGCCAAGGATGATGAGTGAAAC 59.904 50.000 0.00 0.00 0.00 2.78
2983 3485 2.027285 TCGCCAAGGATGATGAGTGAAA 60.027 45.455 0.00 0.00 0.00 2.69
2984 3486 1.554617 TCGCCAAGGATGATGAGTGAA 59.445 47.619 0.00 0.00 0.00 3.18
2985 3487 1.134699 GTCGCCAAGGATGATGAGTGA 60.135 52.381 0.00 0.00 0.00 3.41
2986 3488 1.134580 AGTCGCCAAGGATGATGAGTG 60.135 52.381 0.00 0.00 0.00 3.51
2987 3489 1.134580 CAGTCGCCAAGGATGATGAGT 60.135 52.381 0.00 0.00 0.00 3.41
2988 3490 1.134580 ACAGTCGCCAAGGATGATGAG 60.135 52.381 0.00 0.00 0.00 2.90
2989 3491 0.904649 ACAGTCGCCAAGGATGATGA 59.095 50.000 0.00 0.00 0.00 2.92
2990 3492 1.293924 GACAGTCGCCAAGGATGATG 58.706 55.000 0.00 0.00 0.00 3.07
2991 3493 0.179100 CGACAGTCGCCAAGGATGAT 60.179 55.000 10.66 0.00 31.14 2.45
2992 3494 1.215382 CGACAGTCGCCAAGGATGA 59.785 57.895 10.66 0.00 31.14 2.92
2993 3495 1.079819 ACGACAGTCGCCAAGGATG 60.080 57.895 23.09 0.00 45.12 3.51
2994 3496 1.079819 CACGACAGTCGCCAAGGAT 60.080 57.895 23.09 0.00 45.12 3.24
2995 3497 2.338620 CACGACAGTCGCCAAGGA 59.661 61.111 23.09 0.00 45.12 3.36
2996 3498 3.414700 GCACGACAGTCGCCAAGG 61.415 66.667 23.09 8.59 45.12 3.61
2997 3499 2.661537 TGCACGACAGTCGCCAAG 60.662 61.111 23.09 11.34 45.12 3.61
2998 3500 2.964925 GTGCACGACAGTCGCCAA 60.965 61.111 23.09 5.42 45.12 4.52
2999 3501 4.214327 TGTGCACGACAGTCGCCA 62.214 61.111 23.09 16.73 45.12 5.69
3000 3502 3.702555 GTGTGCACGACAGTCGCC 61.703 66.667 23.09 14.31 45.12 5.54
3001 3503 2.658593 AGTGTGCACGACAGTCGC 60.659 61.111 23.09 8.17 45.12 5.19
3002 3504 0.869880 TTCAGTGTGCACGACAGTCG 60.870 55.000 21.62 21.62 46.93 4.18
3003 3505 0.855349 CTTCAGTGTGCACGACAGTC 59.145 55.000 13.13 0.00 35.93 3.51
3004 3506 0.459899 TCTTCAGTGTGCACGACAGT 59.540 50.000 13.13 0.00 38.93 3.55
3005 3507 1.723542 GATCTTCAGTGTGCACGACAG 59.276 52.381 13.13 8.68 34.28 3.51
3006 3508 1.341209 AGATCTTCAGTGTGCACGACA 59.659 47.619 13.13 0.00 36.20 4.35
3007 3509 2.071688 AGATCTTCAGTGTGCACGAC 57.928 50.000 13.13 11.48 36.20 4.34
3008 3510 2.802247 CAAAGATCTTCAGTGTGCACGA 59.198 45.455 13.13 2.02 36.20 4.35
3009 3511 2.663879 GCAAAGATCTTCAGTGTGCACG 60.664 50.000 19.48 0.00 36.20 5.34
3010 3512 2.551459 AGCAAAGATCTTCAGTGTGCAC 59.449 45.455 23.99 10.75 32.98 4.57
3011 3513 2.551032 CAGCAAAGATCTTCAGTGTGCA 59.449 45.455 23.99 0.00 32.98 4.57
3012 3514 2.810274 TCAGCAAAGATCTTCAGTGTGC 59.190 45.455 17.55 17.55 0.00 4.57
3013 3515 3.120269 GCTCAGCAAAGATCTTCAGTGTG 60.120 47.826 8.78 4.04 0.00 3.82
3014 3516 3.072944 GCTCAGCAAAGATCTTCAGTGT 58.927 45.455 8.78 0.00 0.00 3.55
3015 3517 3.072211 TGCTCAGCAAAGATCTTCAGTG 58.928 45.455 8.78 4.82 34.76 3.66
3016 3518 3.413846 TGCTCAGCAAAGATCTTCAGT 57.586 42.857 8.78 0.00 34.76 3.41
3017 3519 3.939592 TGATGCTCAGCAAAGATCTTCAG 59.060 43.478 1.73 5.98 43.62 3.02
3018 3520 3.939592 CTGATGCTCAGCAAAGATCTTCA 59.060 43.478 1.73 0.00 43.62 3.02
3019 3521 4.190001 TCTGATGCTCAGCAAAGATCTTC 58.810 43.478 1.73 0.00 43.95 2.87
3020 3522 4.193090 CTCTGATGCTCAGCAAAGATCTT 58.807 43.478 14.18 0.88 43.95 2.40
3021 3523 3.799366 CTCTGATGCTCAGCAAAGATCT 58.201 45.455 14.18 0.00 43.95 2.75
3022 3524 2.288458 GCTCTGATGCTCAGCAAAGATC 59.712 50.000 14.18 8.01 43.95 2.75
3023 3525 2.092861 AGCTCTGATGCTCAGCAAAGAT 60.093 45.455 14.18 1.92 43.95 2.40
3024 3526 1.278413 AGCTCTGATGCTCAGCAAAGA 59.722 47.619 1.73 9.44 43.95 2.52
3025 3527 1.740297 AGCTCTGATGCTCAGCAAAG 58.260 50.000 1.73 4.69 43.95 2.77
3026 3528 2.082231 GAAGCTCTGATGCTCAGCAAA 58.918 47.619 1.73 0.00 43.95 3.68
3027 3529 1.002773 TGAAGCTCTGATGCTCAGCAA 59.997 47.619 1.73 0.00 43.95 3.91
3028 3530 0.611714 TGAAGCTCTGATGCTCAGCA 59.388 50.000 0.00 0.00 43.95 4.41
3029 3531 1.666700 CTTGAAGCTCTGATGCTCAGC 59.333 52.381 7.94 0.00 43.95 4.26
3030 3532 3.248495 TCTTGAAGCTCTGATGCTCAG 57.752 47.619 6.79 6.79 45.59 3.35
3031 3533 3.908643 ATCTTGAAGCTCTGATGCTCA 57.091 42.857 0.00 0.00 43.24 4.26
3032 3534 3.560896 GGAATCTTGAAGCTCTGATGCTC 59.439 47.826 0.00 0.00 43.24 4.26
3033 3535 3.200385 AGGAATCTTGAAGCTCTGATGCT 59.800 43.478 0.00 0.00 46.40 3.79
3034 3536 3.312973 CAGGAATCTTGAAGCTCTGATGC 59.687 47.826 0.00 0.00 0.00 3.91
3035 3537 4.767478 TCAGGAATCTTGAAGCTCTGATG 58.233 43.478 0.00 0.00 0.00 3.07
3036 3538 5.430007 CTTCAGGAATCTTGAAGCTCTGAT 58.570 41.667 19.64 0.00 33.69 2.90
3037 3539 4.829968 CTTCAGGAATCTTGAAGCTCTGA 58.170 43.478 19.64 0.40 33.69 3.27
3043 3545 3.415212 TGGTGCTTCAGGAATCTTGAAG 58.585 45.455 25.00 25.00 41.23 3.02
3044 3546 3.507162 TGGTGCTTCAGGAATCTTGAA 57.493 42.857 7.57 7.57 0.00 2.69
3045 3547 3.245016 ACATGGTGCTTCAGGAATCTTGA 60.245 43.478 0.00 0.00 0.00 3.02
3046 3548 3.087031 ACATGGTGCTTCAGGAATCTTG 58.913 45.455 0.00 0.00 0.00 3.02
3047 3549 3.087031 CACATGGTGCTTCAGGAATCTT 58.913 45.455 0.00 0.00 0.00 2.40
3048 3550 2.719739 CACATGGTGCTTCAGGAATCT 58.280 47.619 0.00 0.00 0.00 2.40
3060 3562 0.179000 GGAGGGAGTAGCACATGGTG 59.821 60.000 0.00 0.00 36.51 4.17
3061 3563 1.330655 CGGAGGGAGTAGCACATGGT 61.331 60.000 0.00 0.00 0.00 3.55
3062 3564 1.330655 ACGGAGGGAGTAGCACATGG 61.331 60.000 0.00 0.00 0.00 3.66
3063 3565 0.103208 GACGGAGGGAGTAGCACATG 59.897 60.000 0.00 0.00 0.00 3.21
3064 3566 1.043673 GGACGGAGGGAGTAGCACAT 61.044 60.000 0.00 0.00 0.00 3.21
3065 3567 1.681327 GGACGGAGGGAGTAGCACA 60.681 63.158 0.00 0.00 0.00 4.57
3066 3568 2.772691 CGGACGGAGGGAGTAGCAC 61.773 68.421 0.00 0.00 0.00 4.40
3067 3569 2.439701 CGGACGGAGGGAGTAGCA 60.440 66.667 0.00 0.00 0.00 3.49
3068 3570 3.217743 CCGGACGGAGGGAGTAGC 61.218 72.222 4.40 0.00 37.50 3.58
3069 3571 0.467659 ATTCCGGACGGAGGGAGTAG 60.468 60.000 13.64 0.00 46.06 2.57
3070 3572 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3071 3573 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
3072 3574 0.674534 CTAATTCCGGACGGAGGGAG 59.325 60.000 13.64 8.24 46.06 4.30
3073 3575 0.032813 ACTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
3074 3576 0.828677 AACTAATTCCGGACGGAGGG 59.171 55.000 13.64 7.89 46.06 4.30
3075 3577 1.935933 CAACTAATTCCGGACGGAGG 58.064 55.000 13.64 8.21 46.06 4.30
3076 3578 1.287425 GCAACTAATTCCGGACGGAG 58.713 55.000 13.64 3.57 46.06 4.63
3077 3579 0.108041 GGCAACTAATTCCGGACGGA 60.108 55.000 1.83 9.76 43.52 4.69
3078 3580 1.426041 CGGCAACTAATTCCGGACGG 61.426 60.000 1.83 3.96 39.52 4.79
3079 3581 2.003672 CGGCAACTAATTCCGGACG 58.996 57.895 1.83 0.00 39.52 4.79
3080 3582 0.743345 AGCGGCAACTAATTCCGGAC 60.743 55.000 1.83 0.00 43.11 4.79
3081 3583 0.461339 GAGCGGCAACTAATTCCGGA 60.461 55.000 0.00 0.00 43.11 5.14
3082 3584 0.742990 TGAGCGGCAACTAATTCCGG 60.743 55.000 1.45 0.00 43.11 5.14
3083 3585 1.083489 TTGAGCGGCAACTAATTCCG 58.917 50.000 1.45 0.00 45.46 4.30
3084 3586 2.727916 CGTTTGAGCGGCAACTAATTCC 60.728 50.000 1.45 0.00 35.91 3.01
3085 3587 2.505866 CGTTTGAGCGGCAACTAATTC 58.494 47.619 1.45 0.00 35.91 2.17
3086 3588 1.199097 CCGTTTGAGCGGCAACTAATT 59.801 47.619 1.45 0.00 45.47 1.40
3087 3589 0.802494 CCGTTTGAGCGGCAACTAAT 59.198 50.000 1.45 0.00 45.47 1.73
3088 3590 2.240230 CCGTTTGAGCGGCAACTAA 58.760 52.632 1.45 0.00 45.47 2.24
3089 3591 3.960237 CCGTTTGAGCGGCAACTA 58.040 55.556 1.45 0.00 45.47 2.24
3096 3598 2.607187 ACTTCTACATCCGTTTGAGCG 58.393 47.619 0.00 0.00 0.00 5.03
3097 3599 4.508124 CCATACTTCTACATCCGTTTGAGC 59.492 45.833 0.00 0.00 0.00 4.26
3098 3600 5.902681 TCCATACTTCTACATCCGTTTGAG 58.097 41.667 0.00 0.00 0.00 3.02
3099 3601 5.925506 TCCATACTTCTACATCCGTTTGA 57.074 39.130 0.00 0.00 0.00 2.69
3100 3602 6.018751 CACATCCATACTTCTACATCCGTTTG 60.019 42.308 0.00 0.00 0.00 2.93
3101 3603 6.049149 CACATCCATACTTCTACATCCGTTT 58.951 40.000 0.00 0.00 0.00 3.60
3102 3604 5.362717 TCACATCCATACTTCTACATCCGTT 59.637 40.000 0.00 0.00 0.00 4.44
3103 3605 4.893524 TCACATCCATACTTCTACATCCGT 59.106 41.667 0.00 0.00 0.00 4.69
3104 3606 5.010112 AGTCACATCCATACTTCTACATCCG 59.990 44.000 0.00 0.00 0.00 4.18
3105 3607 6.412362 AGTCACATCCATACTTCTACATCC 57.588 41.667 0.00 0.00 0.00 3.51
3106 3608 8.851145 TCTTAGTCACATCCATACTTCTACATC 58.149 37.037 0.00 0.00 0.00 3.06
3107 3609 8.768501 TCTTAGTCACATCCATACTTCTACAT 57.231 34.615 0.00 0.00 0.00 2.29
3108 3610 8.768501 ATCTTAGTCACATCCATACTTCTACA 57.231 34.615 0.00 0.00 0.00 2.74
3112 3614 9.262358 GGTTTATCTTAGTCACATCCATACTTC 57.738 37.037 0.00 0.00 0.00 3.01
3113 3615 8.768397 TGGTTTATCTTAGTCACATCCATACTT 58.232 33.333 0.00 0.00 0.00 2.24
3114 3616 8.204836 GTGGTTTATCTTAGTCACATCCATACT 58.795 37.037 0.00 0.00 0.00 2.12
3115 3617 7.985184 TGTGGTTTATCTTAGTCACATCCATAC 59.015 37.037 0.00 0.00 31.33 2.39
3116 3618 8.084985 TGTGGTTTATCTTAGTCACATCCATA 57.915 34.615 0.00 0.00 31.33 2.74
3117 3619 6.957631 TGTGGTTTATCTTAGTCACATCCAT 58.042 36.000 0.00 0.00 31.33 3.41
3118 3620 6.367374 TGTGGTTTATCTTAGTCACATCCA 57.633 37.500 0.00 0.00 31.33 3.41
3119 3621 6.316390 CCTTGTGGTTTATCTTAGTCACATCC 59.684 42.308 0.00 0.00 35.48 3.51
3120 3622 7.103641 TCCTTGTGGTTTATCTTAGTCACATC 58.896 38.462 0.00 0.00 35.48 3.06
3121 3623 7.016153 TCCTTGTGGTTTATCTTAGTCACAT 57.984 36.000 0.00 0.00 35.48 3.21
3122 3624 6.428083 TCCTTGTGGTTTATCTTAGTCACA 57.572 37.500 0.00 0.00 33.97 3.58
3123 3625 7.103641 TCATCCTTGTGGTTTATCTTAGTCAC 58.896 38.462 0.00 0.00 34.23 3.67
3124 3626 7.252612 TCATCCTTGTGGTTTATCTTAGTCA 57.747 36.000 0.00 0.00 34.23 3.41
3125 3627 8.738645 ATTCATCCTTGTGGTTTATCTTAGTC 57.261 34.615 0.00 0.00 34.23 2.59
3126 3628 8.328758 TGATTCATCCTTGTGGTTTATCTTAGT 58.671 33.333 0.00 0.00 34.23 2.24
3127 3629 8.737168 TGATTCATCCTTGTGGTTTATCTTAG 57.263 34.615 0.00 0.00 34.23 2.18
3128 3630 9.699410 AATGATTCATCCTTGTGGTTTATCTTA 57.301 29.630 0.00 0.00 34.23 2.10
3129 3631 8.599624 AATGATTCATCCTTGTGGTTTATCTT 57.400 30.769 0.00 0.00 34.23 2.40
3130 3632 9.872684 ATAATGATTCATCCTTGTGGTTTATCT 57.127 29.630 0.00 0.00 34.23 1.98
3134 3636 9.439500 CAAAATAATGATTCATCCTTGTGGTTT 57.561 29.630 0.00 0.00 34.23 3.27
3135 3637 8.814931 TCAAAATAATGATTCATCCTTGTGGTT 58.185 29.630 0.00 0.00 34.23 3.67
3136 3638 8.365060 TCAAAATAATGATTCATCCTTGTGGT 57.635 30.769 0.00 0.00 34.23 4.16
3137 3639 9.826574 ATTCAAAATAATGATTCATCCTTGTGG 57.173 29.630 0.00 0.00 0.00 4.17
3156 3658 9.434420 CCATTGTTATTAGCAGGAAATTCAAAA 57.566 29.630 0.00 0.00 0.00 2.44
3157 3659 8.811017 TCCATTGTTATTAGCAGGAAATTCAAA 58.189 29.630 0.00 0.00 0.00 2.69
3158 3660 8.250332 GTCCATTGTTATTAGCAGGAAATTCAA 58.750 33.333 0.00 0.00 0.00 2.69
3159 3661 7.615365 AGTCCATTGTTATTAGCAGGAAATTCA 59.385 33.333 0.00 0.00 0.00 2.57
3160 3662 8.000780 AGTCCATTGTTATTAGCAGGAAATTC 57.999 34.615 0.00 0.00 0.00 2.17
3161 3663 7.615365 TGAGTCCATTGTTATTAGCAGGAAATT 59.385 33.333 0.00 0.00 0.00 1.82
3162 3664 7.118723 TGAGTCCATTGTTATTAGCAGGAAAT 58.881 34.615 0.00 0.00 0.00 2.17
3163 3665 6.480763 TGAGTCCATTGTTATTAGCAGGAAA 58.519 36.000 0.00 0.00 0.00 3.13
3164 3666 6.061022 TGAGTCCATTGTTATTAGCAGGAA 57.939 37.500 0.00 0.00 0.00 3.36
3165 3667 5.692115 TGAGTCCATTGTTATTAGCAGGA 57.308 39.130 0.00 0.00 0.00 3.86
3166 3668 5.882557 AGTTGAGTCCATTGTTATTAGCAGG 59.117 40.000 0.00 0.00 0.00 4.85
3167 3669 6.992063 AGTTGAGTCCATTGTTATTAGCAG 57.008 37.500 0.00 0.00 0.00 4.24
3168 3670 8.046708 ACATAGTTGAGTCCATTGTTATTAGCA 58.953 33.333 0.00 0.00 0.00 3.49
3169 3671 8.438676 ACATAGTTGAGTCCATTGTTATTAGC 57.561 34.615 0.00 0.00 0.00 3.09
3175 3677 9.520515 AAGAAATACATAGTTGAGTCCATTGTT 57.479 29.630 0.00 0.00 0.00 2.83
3176 3678 9.167311 GAAGAAATACATAGTTGAGTCCATTGT 57.833 33.333 0.00 0.00 0.00 2.71
3177 3679 9.388506 AGAAGAAATACATAGTTGAGTCCATTG 57.611 33.333 0.00 0.00 0.00 2.82
3195 3697 9.799106 TCTCCTTCAAGAAACAATAGAAGAAAT 57.201 29.630 0.00 0.00 38.30 2.17
3196 3698 9.277783 CTCTCCTTCAAGAAACAATAGAAGAAA 57.722 33.333 0.00 0.00 38.30 2.52
3197 3699 7.880195 CCTCTCCTTCAAGAAACAATAGAAGAA 59.120 37.037 0.00 0.00 38.30 2.52
3198 3700 7.016661 ACCTCTCCTTCAAGAAACAATAGAAGA 59.983 37.037 0.00 0.00 38.30 2.87
3199 3701 7.164803 ACCTCTCCTTCAAGAAACAATAGAAG 58.835 38.462 0.00 0.00 36.38 2.85
3200 3702 7.079451 ACCTCTCCTTCAAGAAACAATAGAA 57.921 36.000 0.00 0.00 0.00 2.10
3201 3703 6.688073 ACCTCTCCTTCAAGAAACAATAGA 57.312 37.500 0.00 0.00 0.00 1.98
3202 3704 7.065204 GCTTACCTCTCCTTCAAGAAACAATAG 59.935 40.741 0.00 0.00 0.00 1.73
3203 3705 6.879458 GCTTACCTCTCCTTCAAGAAACAATA 59.121 38.462 0.00 0.00 0.00 1.90
3204 3706 5.707764 GCTTACCTCTCCTTCAAGAAACAAT 59.292 40.000 0.00 0.00 0.00 2.71
3205 3707 5.063880 GCTTACCTCTCCTTCAAGAAACAA 58.936 41.667 0.00 0.00 0.00 2.83
3206 3708 4.505039 GGCTTACCTCTCCTTCAAGAAACA 60.505 45.833 0.00 0.00 0.00 2.83
3207 3709 4.004314 GGCTTACCTCTCCTTCAAGAAAC 58.996 47.826 0.00 0.00 0.00 2.78
3208 3710 3.009143 GGGCTTACCTCTCCTTCAAGAAA 59.991 47.826 0.00 0.00 35.85 2.52
3209 3711 2.572104 GGGCTTACCTCTCCTTCAAGAA 59.428 50.000 0.00 0.00 35.85 2.52
3210 3712 2.188817 GGGCTTACCTCTCCTTCAAGA 58.811 52.381 0.00 0.00 35.85 3.02
3211 3713 2.700722 GGGCTTACCTCTCCTTCAAG 57.299 55.000 0.00 0.00 35.85 3.02
3222 3724 2.418334 CCGTTAAGAGTCAGGGCTTACC 60.418 54.545 0.00 0.00 40.67 2.85
3223 3725 2.494870 TCCGTTAAGAGTCAGGGCTTAC 59.505 50.000 0.00 0.00 0.00 2.34
3224 3726 2.811410 TCCGTTAAGAGTCAGGGCTTA 58.189 47.619 0.00 0.00 0.00 3.09
3225 3727 1.640917 TCCGTTAAGAGTCAGGGCTT 58.359 50.000 0.00 0.00 0.00 4.35
3226 3728 1.275573 GTTCCGTTAAGAGTCAGGGCT 59.724 52.381 0.00 0.00 0.00 5.19
3227 3729 1.001633 TGTTCCGTTAAGAGTCAGGGC 59.998 52.381 0.00 0.00 0.00 5.19
3228 3730 2.561419 TCTGTTCCGTTAAGAGTCAGGG 59.439 50.000 0.00 0.00 30.54 4.45
3229 3731 3.367498 CCTCTGTTCCGTTAAGAGTCAGG 60.367 52.174 0.00 0.00 36.51 3.86
3230 3732 3.256136 ACCTCTGTTCCGTTAAGAGTCAG 59.744 47.826 0.00 0.00 36.51 3.51
3231 3733 3.228453 ACCTCTGTTCCGTTAAGAGTCA 58.772 45.455 0.00 0.00 36.51 3.41
3232 3734 3.506844 AGACCTCTGTTCCGTTAAGAGTC 59.493 47.826 0.00 0.00 36.51 3.36
3233 3735 3.498334 AGACCTCTGTTCCGTTAAGAGT 58.502 45.455 0.00 0.00 36.51 3.24
3234 3736 4.458295 TGTAGACCTCTGTTCCGTTAAGAG 59.542 45.833 0.00 0.00 37.73 2.85
3235 3737 4.401022 TGTAGACCTCTGTTCCGTTAAGA 58.599 43.478 0.00 0.00 0.00 2.10
3236 3738 4.778534 TGTAGACCTCTGTTCCGTTAAG 57.221 45.455 0.00 0.00 0.00 1.85
3237 3739 5.534207 TTTGTAGACCTCTGTTCCGTTAA 57.466 39.130 0.00 0.00 0.00 2.01
3238 3740 5.534207 TTTTGTAGACCTCTGTTCCGTTA 57.466 39.130 0.00 0.00 0.00 3.18
3239 3741 4.377897 CTTTTGTAGACCTCTGTTCCGTT 58.622 43.478 0.00 0.00 0.00 4.44
3240 3742 3.802675 GCTTTTGTAGACCTCTGTTCCGT 60.803 47.826 0.00 0.00 0.00 4.69
3241 3743 2.737252 GCTTTTGTAGACCTCTGTTCCG 59.263 50.000 0.00 0.00 0.00 4.30
3242 3744 3.075148 GGCTTTTGTAGACCTCTGTTCC 58.925 50.000 0.00 0.00 0.00 3.62
3261 3763 4.446413 GTTGCATGCAGCCTGGGC 62.446 66.667 22.63 3.00 44.83 5.36
3262 3764 1.378911 TAGTTGCATGCAGCCTGGG 60.379 57.895 28.22 0.00 44.83 4.45
3263 3765 0.679002 AGTAGTTGCATGCAGCCTGG 60.679 55.000 28.22 0.00 44.83 4.45
3264 3766 0.450583 CAGTAGTTGCATGCAGCCTG 59.549 55.000 28.22 23.78 44.83 4.85
3265 3767 0.037303 ACAGTAGTTGCATGCAGCCT 59.963 50.000 28.22 24.31 44.83 4.58
3266 3768 0.449388 GACAGTAGTTGCATGCAGCC 59.551 55.000 28.22 19.09 44.83 4.85
3267 3769 0.095935 CGACAGTAGTTGCATGCAGC 59.904 55.000 25.27 25.27 45.96 5.25
3268 3770 0.723414 CCGACAGTAGTTGCATGCAG 59.277 55.000 21.50 10.66 0.00 4.41
3269 3771 1.298157 GCCGACAGTAGTTGCATGCA 61.298 55.000 18.46 18.46 0.00 3.96
3270 3772 1.298157 TGCCGACAGTAGTTGCATGC 61.298 55.000 11.82 11.82 32.90 4.06
3271 3773 0.723414 CTGCCGACAGTAGTTGCATG 59.277 55.000 0.00 0.00 39.22 4.06
3272 3774 3.143675 CTGCCGACAGTAGTTGCAT 57.856 52.632 0.00 0.00 39.22 3.96
3273 3775 4.673403 CTGCCGACAGTAGTTGCA 57.327 55.556 0.00 0.00 39.22 4.08
3282 3784 0.878523 CCGTTCTGAAACTGCCGACA 60.879 55.000 0.00 0.00 32.95 4.35
3283 3785 0.599204 TCCGTTCTGAAACTGCCGAC 60.599 55.000 0.00 0.00 32.95 4.79
3284 3786 0.105224 TTCCGTTCTGAAACTGCCGA 59.895 50.000 0.00 0.00 32.95 5.54
3285 3787 0.941542 TTTCCGTTCTGAAACTGCCG 59.058 50.000 0.00 0.00 32.95 5.69
3286 3788 2.543031 GGTTTTCCGTTCTGAAACTGCC 60.543 50.000 0.00 0.00 34.13 4.85
3287 3789 2.098443 TGGTTTTCCGTTCTGAAACTGC 59.902 45.455 0.00 0.00 44.36 4.40
3288 3790 4.568152 ATGGTTTTCCGTTCTGAAACTG 57.432 40.909 0.00 0.00 44.36 3.16
3298 3800 9.634163 GTAAGAATAAATTGAATGGTTTTCCGT 57.366 29.630 0.00 0.00 44.36 4.69
3299 3801 8.794406 CGTAAGAATAAATTGAATGGTTTTCCG 58.206 33.333 0.00 0.00 41.65 4.30
3320 3822 4.545823 TGGCAAACTGAACTTTCGTAAG 57.454 40.909 0.00 0.00 37.40 2.34
3321 3823 4.791411 GCATGGCAAACTGAACTTTCGTAA 60.791 41.667 0.00 0.00 0.00 3.18
3322 3824 3.304391 GCATGGCAAACTGAACTTTCGTA 60.304 43.478 0.00 0.00 0.00 3.43
3323 3825 2.543653 GCATGGCAAACTGAACTTTCGT 60.544 45.455 0.00 0.00 0.00 3.85
3324 3826 2.053627 GCATGGCAAACTGAACTTTCG 58.946 47.619 0.00 0.00 0.00 3.46
3325 3827 3.054878 CAGCATGGCAAACTGAACTTTC 58.945 45.455 13.24 0.00 33.10 2.62
3326 3828 2.804212 GCAGCATGGCAAACTGAACTTT 60.804 45.455 20.49 0.00 35.86 2.66
3327 3829 1.269936 GCAGCATGGCAAACTGAACTT 60.270 47.619 20.49 0.00 35.86 2.66
3328 3830 0.316204 GCAGCATGGCAAACTGAACT 59.684 50.000 20.49 0.00 35.86 3.01
3329 3831 0.316204 AGCAGCATGGCAAACTGAAC 59.684 50.000 20.49 6.89 35.86 3.18
3330 3832 0.599558 GAGCAGCATGGCAAACTGAA 59.400 50.000 20.49 0.00 35.86 3.02
3331 3833 0.537828 TGAGCAGCATGGCAAACTGA 60.538 50.000 20.49 1.13 35.86 3.41
3332 3834 0.109272 CTGAGCAGCATGGCAAACTG 60.109 55.000 13.97 13.97 35.86 3.16
3333 3835 2.264124 CTGAGCAGCATGGCAAACT 58.736 52.632 0.00 0.00 35.86 2.66
3334 3836 4.883026 CTGAGCAGCATGGCAAAC 57.117 55.556 0.00 0.00 35.86 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.