Multiple sequence alignment - TraesCS3A01G477400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G477400 chr3A 100.000 3329 0 0 1 3329 709162121 709165449 0.000000e+00 6148.0
1 TraesCS3A01G477400 chr3A 85.642 1588 204 10 770 2338 709189952 709191534 0.000000e+00 1648.0
2 TraesCS3A01G477400 chr3D 92.861 1975 97 19 327 2279 574228234 574230186 0.000000e+00 2826.0
3 TraesCS3A01G477400 chr3D 86.127 1557 195 9 801 2338 574238496 574240050 0.000000e+00 1659.0
4 TraesCS3A01G477400 chr3D 93.294 671 35 9 2661 3329 574231036 574231698 0.000000e+00 981.0
5 TraesCS3A01G477400 chr3D 95.142 247 9 1 2389 2632 574230183 574230429 1.450000e-103 387.0
6 TraesCS3A01G477400 chrUn 91.251 2046 119 23 618 2621 183979543 183981570 0.000000e+00 2732.0
7 TraesCS3A01G477400 chrUn 85.813 1593 199 13 770 2342 41228557 41226972 0.000000e+00 1664.0
8 TraesCS3A01G477400 chrUn 81.818 429 39 19 287 701 183978882 183979285 1.150000e-84 324.0
9 TraesCS3A01G477400 chrUn 97.826 46 1 0 2624 2669 183981603 183981648 2.750000e-11 80.5
10 TraesCS3A01G477400 chr7A 82.721 735 97 12 1909 2621 642888034 642888760 7.840000e-176 627.0
11 TraesCS3A01G477400 chr7A 97.826 46 1 0 2624 2669 642888801 642888846 2.750000e-11 80.5
12 TraesCS3A01G477400 chr2A 83.277 592 79 9 1909 2490 526303190 526303771 8.180000e-146 527.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G477400 chr3A 709162121 709165449 3328 False 6148.00 6148 100.000000 1 3329 1 chr3A.!!$F1 3328
1 TraesCS3A01G477400 chr3A 709189952 709191534 1582 False 1648.00 1648 85.642000 770 2338 1 chr3A.!!$F2 1568
2 TraesCS3A01G477400 chr3D 574238496 574240050 1554 False 1659.00 1659 86.127000 801 2338 1 chr3D.!!$F1 1537
3 TraesCS3A01G477400 chr3D 574228234 574231698 3464 False 1398.00 2826 93.765667 327 3329 3 chr3D.!!$F2 3002
4 TraesCS3A01G477400 chrUn 41226972 41228557 1585 True 1664.00 1664 85.813000 770 2342 1 chrUn.!!$R1 1572
5 TraesCS3A01G477400 chrUn 183978882 183981648 2766 False 1045.50 2732 90.298333 287 2669 3 chrUn.!!$F1 2382
6 TraesCS3A01G477400 chr7A 642888034 642888846 812 False 353.75 627 90.273500 1909 2669 2 chr7A.!!$F1 760
7 TraesCS3A01G477400 chr2A 526303190 526303771 581 False 527.00 527 83.277000 1909 2490 1 chr2A.!!$F1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.032017 AGAAGGTAGCGGTGGGATCT 60.032 55.0 0.0 0.0 0.0 2.75 F
204 205 0.105039 GAAGGTAGCGGTGGGATCTG 59.895 60.0 0.0 0.0 0.0 2.90 F
1074 1476 0.331278 TGGGTGATGAACATGGGACC 59.669 55.0 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2116 2526 0.544357 CCTATCCCACCATAGCCCGA 60.544 60.000 0.00 0.0 0.00 5.14 R
2173 2583 3.458831 ACTCCTCATCAGATGGGTCTTT 58.541 45.455 9.56 0.0 30.42 2.52 R
2708 3800 0.110056 GCCACACATCACAAAGCTCG 60.110 55.000 0.00 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.581354 GAGTGCTCTCGCCATGGT 59.419 61.111 14.67 0.00 34.43 3.55
29 30 1.816537 GAGTGCTCTCGCCATGGTA 59.183 57.895 14.67 0.74 34.43 3.25
30 31 0.175760 GAGTGCTCTCGCCATGGTAA 59.824 55.000 14.67 0.38 34.43 2.85
31 32 0.108138 AGTGCTCTCGCCATGGTAAC 60.108 55.000 14.67 0.00 34.43 2.50
32 33 0.391130 GTGCTCTCGCCATGGTAACA 60.391 55.000 14.67 0.79 44.48 2.41
33 34 0.323302 TGCTCTCGCCATGGTAACAA 59.677 50.000 14.67 0.00 43.75 2.83
34 35 1.943968 TGCTCTCGCCATGGTAACAAC 60.944 52.381 14.67 0.18 43.75 3.32
35 36 4.507610 TGCTCTCGCCATGGTAACAACA 62.508 50.000 14.67 3.04 43.75 3.33
36 37 5.750375 TGCTCTCGCCATGGTAACAACAT 62.750 47.826 14.67 0.00 43.75 2.71
44 45 2.084013 GGTAACAACATCGGTCGCC 58.916 57.895 0.00 0.00 0.00 5.54
45 46 1.363885 GGTAACAACATCGGTCGCCC 61.364 60.000 0.00 0.00 0.00 6.13
46 47 0.390735 GTAACAACATCGGTCGCCCT 60.391 55.000 0.00 0.00 0.00 5.19
47 48 0.108520 TAACAACATCGGTCGCCCTC 60.109 55.000 0.00 0.00 0.00 4.30
48 49 1.827399 AACAACATCGGTCGCCCTCT 61.827 55.000 0.00 0.00 0.00 3.69
49 50 1.519455 CAACATCGGTCGCCCTCTC 60.519 63.158 0.00 0.00 0.00 3.20
50 51 2.722201 AACATCGGTCGCCCTCTCC 61.722 63.158 0.00 0.00 0.00 3.71
51 52 2.835431 CATCGGTCGCCCTCTCCT 60.835 66.667 0.00 0.00 0.00 3.69
52 53 2.519780 ATCGGTCGCCCTCTCCTC 60.520 66.667 0.00 0.00 0.00 3.71
53 54 3.063197 ATCGGTCGCCCTCTCCTCT 62.063 63.158 0.00 0.00 0.00 3.69
54 55 2.575455 ATCGGTCGCCCTCTCCTCTT 62.575 60.000 0.00 0.00 0.00 2.85
55 56 2.776913 CGGTCGCCCTCTCCTCTTC 61.777 68.421 0.00 0.00 0.00 2.87
56 57 2.428085 GGTCGCCCTCTCCTCTTCC 61.428 68.421 0.00 0.00 0.00 3.46
57 58 2.042843 TCGCCCTCTCCTCTTCCC 60.043 66.667 0.00 0.00 0.00 3.97
58 59 2.042435 CGCCCTCTCCTCTTCCCT 60.042 66.667 0.00 0.00 0.00 4.20
59 60 1.687493 CGCCCTCTCCTCTTCCCTT 60.687 63.158 0.00 0.00 0.00 3.95
60 61 1.681486 CGCCCTCTCCTCTTCCCTTC 61.681 65.000 0.00 0.00 0.00 3.46
61 62 0.326143 GCCCTCTCCTCTTCCCTTCT 60.326 60.000 0.00 0.00 0.00 2.85
62 63 1.062810 GCCCTCTCCTCTTCCCTTCTA 60.063 57.143 0.00 0.00 0.00 2.10
63 64 2.957474 CCCTCTCCTCTTCCCTTCTAG 58.043 57.143 0.00 0.00 0.00 2.43
64 65 2.316108 CCTCTCCTCTTCCCTTCTAGC 58.684 57.143 0.00 0.00 0.00 3.42
65 66 2.091333 CCTCTCCTCTTCCCTTCTAGCT 60.091 54.545 0.00 0.00 0.00 3.32
66 67 3.139397 CCTCTCCTCTTCCCTTCTAGCTA 59.861 52.174 0.00 0.00 0.00 3.32
67 68 4.398319 CTCTCCTCTTCCCTTCTAGCTAG 58.602 52.174 15.01 15.01 0.00 3.42
68 69 3.789274 TCTCCTCTTCCCTTCTAGCTAGT 59.211 47.826 20.10 0.00 0.00 2.57
69 70 4.230964 TCTCCTCTTCCCTTCTAGCTAGTT 59.769 45.833 20.10 0.00 0.00 2.24
70 71 4.949121 TCCTCTTCCCTTCTAGCTAGTTT 58.051 43.478 20.10 0.00 0.00 2.66
71 72 4.957327 TCCTCTTCCCTTCTAGCTAGTTTC 59.043 45.833 20.10 0.00 0.00 2.78
72 73 4.712337 CCTCTTCCCTTCTAGCTAGTTTCA 59.288 45.833 20.10 0.00 0.00 2.69
73 74 5.365314 CCTCTTCCCTTCTAGCTAGTTTCAT 59.635 44.000 20.10 0.00 0.00 2.57
74 75 6.126911 CCTCTTCCCTTCTAGCTAGTTTCATT 60.127 42.308 20.10 0.00 0.00 2.57
75 76 7.070074 CCTCTTCCCTTCTAGCTAGTTTCATTA 59.930 40.741 20.10 0.00 0.00 1.90
76 77 8.554490 TCTTCCCTTCTAGCTAGTTTCATTAT 57.446 34.615 20.10 0.00 0.00 1.28
77 78 8.424918 TCTTCCCTTCTAGCTAGTTTCATTATG 58.575 37.037 20.10 2.06 0.00 1.90
78 79 7.676683 TCCCTTCTAGCTAGTTTCATTATGT 57.323 36.000 20.10 0.00 0.00 2.29
79 80 8.090788 TCCCTTCTAGCTAGTTTCATTATGTT 57.909 34.615 20.10 0.00 0.00 2.71
80 81 8.204836 TCCCTTCTAGCTAGTTTCATTATGTTC 58.795 37.037 20.10 0.00 0.00 3.18
81 82 7.169982 CCCTTCTAGCTAGTTTCATTATGTTCG 59.830 40.741 20.10 0.00 0.00 3.95
82 83 7.707035 CCTTCTAGCTAGTTTCATTATGTTCGT 59.293 37.037 20.10 0.00 0.00 3.85
83 84 7.987268 TCTAGCTAGTTTCATTATGTTCGTG 57.013 36.000 20.10 0.00 0.00 4.35
84 85 7.768240 TCTAGCTAGTTTCATTATGTTCGTGA 58.232 34.615 20.10 0.00 0.00 4.35
85 86 8.248253 TCTAGCTAGTTTCATTATGTTCGTGAA 58.752 33.333 20.10 0.00 0.00 3.18
86 87 7.849804 AGCTAGTTTCATTATGTTCGTGAAT 57.150 32.000 0.00 0.00 32.48 2.57
87 88 8.268850 AGCTAGTTTCATTATGTTCGTGAATT 57.731 30.769 0.00 0.00 32.48 2.17
88 89 8.177663 AGCTAGTTTCATTATGTTCGTGAATTG 58.822 33.333 0.00 0.00 32.48 2.32
89 90 7.044706 GCTAGTTTCATTATGTTCGTGAATTGC 60.045 37.037 0.00 0.00 32.48 3.56
90 91 6.913170 AGTTTCATTATGTTCGTGAATTGCT 58.087 32.000 0.00 0.00 32.48 3.91
91 92 8.039603 AGTTTCATTATGTTCGTGAATTGCTA 57.960 30.769 0.00 0.00 32.48 3.49
92 93 8.177663 AGTTTCATTATGTTCGTGAATTGCTAG 58.822 33.333 0.00 0.00 32.48 3.42
93 94 7.609760 TTCATTATGTTCGTGAATTGCTAGT 57.390 32.000 0.00 0.00 0.00 2.57
94 95 7.609760 TCATTATGTTCGTGAATTGCTAGTT 57.390 32.000 0.00 0.00 0.00 2.24
95 96 8.039603 TCATTATGTTCGTGAATTGCTAGTTT 57.960 30.769 0.00 0.00 0.00 2.66
96 97 8.175069 TCATTATGTTCGTGAATTGCTAGTTTC 58.825 33.333 0.00 0.00 0.00 2.78
97 98 4.742438 TGTTCGTGAATTGCTAGTTTCC 57.258 40.909 0.00 0.00 0.00 3.13
98 99 4.385825 TGTTCGTGAATTGCTAGTTTCCT 58.614 39.130 0.00 0.00 0.00 3.36
99 100 4.451096 TGTTCGTGAATTGCTAGTTTCCTC 59.549 41.667 0.00 0.00 0.00 3.71
100 101 4.537135 TCGTGAATTGCTAGTTTCCTCT 57.463 40.909 0.00 0.00 0.00 3.69
101 102 4.894784 TCGTGAATTGCTAGTTTCCTCTT 58.105 39.130 0.00 0.00 0.00 2.85
102 103 4.929808 TCGTGAATTGCTAGTTTCCTCTTC 59.070 41.667 0.00 0.00 0.00 2.87
103 104 4.093556 CGTGAATTGCTAGTTTCCTCTTCC 59.906 45.833 0.00 0.00 0.00 3.46
104 105 4.093556 GTGAATTGCTAGTTTCCTCTTCCG 59.906 45.833 0.00 0.00 0.00 4.30
105 106 4.020573 TGAATTGCTAGTTTCCTCTTCCGA 60.021 41.667 0.00 0.00 0.00 4.55
106 107 4.762289 ATTGCTAGTTTCCTCTTCCGAT 57.238 40.909 0.00 0.00 0.00 4.18
107 108 3.802948 TGCTAGTTTCCTCTTCCGATC 57.197 47.619 0.00 0.00 0.00 3.69
108 109 2.099263 TGCTAGTTTCCTCTTCCGATCG 59.901 50.000 8.51 8.51 0.00 3.69
109 110 2.358267 GCTAGTTTCCTCTTCCGATCGA 59.642 50.000 18.66 0.00 0.00 3.59
110 111 3.004944 GCTAGTTTCCTCTTCCGATCGAT 59.995 47.826 18.66 0.00 0.00 3.59
111 112 3.719173 AGTTTCCTCTTCCGATCGATC 57.281 47.619 18.66 15.68 0.00 3.69
112 113 3.292460 AGTTTCCTCTTCCGATCGATCT 58.708 45.455 22.43 0.00 0.00 2.75
113 114 4.462133 AGTTTCCTCTTCCGATCGATCTA 58.538 43.478 22.43 8.41 0.00 1.98
114 115 5.074115 AGTTTCCTCTTCCGATCGATCTAT 58.926 41.667 22.43 0.00 0.00 1.98
115 116 6.239396 AGTTTCCTCTTCCGATCGATCTATA 58.761 40.000 22.43 5.56 0.00 1.31
116 117 6.373216 AGTTTCCTCTTCCGATCGATCTATAG 59.627 42.308 22.43 15.27 0.00 1.31
117 118 5.423704 TCCTCTTCCGATCGATCTATAGT 57.576 43.478 22.43 0.00 0.00 2.12
118 119 5.806818 TCCTCTTCCGATCGATCTATAGTT 58.193 41.667 22.43 0.00 0.00 2.24
119 120 6.944096 TCCTCTTCCGATCGATCTATAGTTA 58.056 40.000 22.43 2.36 0.00 2.24
120 121 7.392418 TCCTCTTCCGATCGATCTATAGTTAA 58.608 38.462 22.43 5.95 0.00 2.01
121 122 7.881751 TCCTCTTCCGATCGATCTATAGTTAAA 59.118 37.037 22.43 5.07 0.00 1.52
122 123 7.964011 CCTCTTCCGATCGATCTATAGTTAAAC 59.036 40.741 22.43 0.00 0.00 2.01
123 124 8.618702 TCTTCCGATCGATCTATAGTTAAACT 57.381 34.615 22.43 0.00 0.00 2.66
124 125 8.719648 TCTTCCGATCGATCTATAGTTAAACTC 58.280 37.037 22.43 0.00 0.00 3.01
125 126 7.058298 TCCGATCGATCTATAGTTAAACTCG 57.942 40.000 22.43 6.11 0.00 4.18
126 127 6.870439 TCCGATCGATCTATAGTTAAACTCGA 59.130 38.462 22.43 6.28 37.95 4.04
127 128 7.548427 TCCGATCGATCTATAGTTAAACTCGAT 59.452 37.037 22.43 15.61 44.35 3.59
128 129 8.176365 CCGATCGATCTATAGTTAAACTCGATT 58.824 37.037 22.43 0.00 42.46 3.34
136 137 9.060347 TCTATAGTTAAACTCGATTATGTCCGT 57.940 33.333 0.00 0.00 0.00 4.69
137 138 7.925703 ATAGTTAAACTCGATTATGTCCGTG 57.074 36.000 0.00 0.00 0.00 4.94
138 139 5.717119 AGTTAAACTCGATTATGTCCGTGT 58.283 37.500 0.00 0.00 34.57 4.49
139 140 5.803967 AGTTAAACTCGATTATGTCCGTGTC 59.196 40.000 0.00 0.00 32.40 3.67
140 141 2.470196 ACTCGATTATGTCCGTGTCG 57.530 50.000 0.00 0.00 0.00 4.35
141 142 1.121240 CTCGATTATGTCCGTGTCGC 58.879 55.000 0.00 0.00 32.74 5.19
142 143 0.736636 TCGATTATGTCCGTGTCGCT 59.263 50.000 0.00 0.00 32.74 4.93
143 144 0.846401 CGATTATGTCCGTGTCGCTG 59.154 55.000 0.00 0.00 0.00 5.18
144 145 1.209128 GATTATGTCCGTGTCGCTGG 58.791 55.000 0.00 0.00 0.00 4.85
145 146 0.535335 ATTATGTCCGTGTCGCTGGT 59.465 50.000 0.00 0.00 0.00 4.00
146 147 0.389296 TTATGTCCGTGTCGCTGGTG 60.389 55.000 0.00 0.00 0.00 4.17
147 148 2.220615 TATGTCCGTGTCGCTGGTGG 62.221 60.000 0.00 0.00 0.00 4.61
150 151 4.619227 CCGTGTCGCTGGTGGGTT 62.619 66.667 0.00 0.00 0.00 4.11
151 152 2.590575 CGTGTCGCTGGTGGGTTT 60.591 61.111 0.00 0.00 0.00 3.27
152 153 2.892334 CGTGTCGCTGGTGGGTTTG 61.892 63.158 0.00 0.00 0.00 2.93
153 154 1.525077 GTGTCGCTGGTGGGTTTGA 60.525 57.895 0.00 0.00 0.00 2.69
154 155 1.227823 TGTCGCTGGTGGGTTTGAG 60.228 57.895 0.00 0.00 0.00 3.02
155 156 1.966451 GTCGCTGGTGGGTTTGAGG 60.966 63.158 0.00 0.00 0.00 3.86
156 157 3.365265 CGCTGGTGGGTTTGAGGC 61.365 66.667 0.00 0.00 0.00 4.70
157 158 3.365265 GCTGGTGGGTTTGAGGCG 61.365 66.667 0.00 0.00 0.00 5.52
158 159 2.113139 CTGGTGGGTTTGAGGCGT 59.887 61.111 0.00 0.00 0.00 5.68
159 160 2.203280 TGGTGGGTTTGAGGCGTG 60.203 61.111 0.00 0.00 0.00 5.34
160 161 2.203294 GGTGGGTTTGAGGCGTGT 60.203 61.111 0.00 0.00 0.00 4.49
161 162 1.826487 GGTGGGTTTGAGGCGTGTT 60.826 57.895 0.00 0.00 0.00 3.32
162 163 1.388837 GGTGGGTTTGAGGCGTGTTT 61.389 55.000 0.00 0.00 0.00 2.83
163 164 0.248866 GTGGGTTTGAGGCGTGTTTG 60.249 55.000 0.00 0.00 0.00 2.93
164 165 0.394488 TGGGTTTGAGGCGTGTTTGA 60.394 50.000 0.00 0.00 0.00 2.69
165 166 0.958822 GGGTTTGAGGCGTGTTTGAT 59.041 50.000 0.00 0.00 0.00 2.57
166 167 1.068541 GGGTTTGAGGCGTGTTTGATC 60.069 52.381 0.00 0.00 0.00 2.92
167 168 1.068541 GGTTTGAGGCGTGTTTGATCC 60.069 52.381 0.00 0.00 0.00 3.36
168 169 0.871722 TTTGAGGCGTGTTTGATCCG 59.128 50.000 0.00 0.00 0.00 4.18
169 170 0.034198 TTGAGGCGTGTTTGATCCGA 59.966 50.000 0.00 0.00 0.00 4.55
170 171 0.249120 TGAGGCGTGTTTGATCCGAT 59.751 50.000 0.00 0.00 0.00 4.18
171 172 0.931005 GAGGCGTGTTTGATCCGATC 59.069 55.000 1.01 1.01 0.00 3.69
172 173 0.806102 AGGCGTGTTTGATCCGATCG 60.806 55.000 8.51 8.51 0.00 3.69
173 174 1.636340 GCGTGTTTGATCCGATCGG 59.364 57.895 28.62 28.62 0.00 4.18
174 175 1.762222 GCGTGTTTGATCCGATCGGG 61.762 60.000 32.79 14.92 35.59 5.14
175 176 0.459585 CGTGTTTGATCCGATCGGGT 60.460 55.000 32.79 28.36 37.00 5.28
176 177 1.734163 GTGTTTGATCCGATCGGGTT 58.266 50.000 32.79 21.01 37.00 4.11
177 178 2.081462 GTGTTTGATCCGATCGGGTTT 58.919 47.619 32.79 18.44 37.00 3.27
178 179 2.486592 GTGTTTGATCCGATCGGGTTTT 59.513 45.455 32.79 15.92 37.00 2.43
179 180 2.745281 TGTTTGATCCGATCGGGTTTTC 59.255 45.455 32.79 22.75 37.00 2.29
180 181 1.647346 TTGATCCGATCGGGTTTTCG 58.353 50.000 32.79 6.63 37.00 3.46
184 185 2.580276 CGATCGGGTTTTCGGGGA 59.420 61.111 7.38 0.00 0.00 4.81
185 186 1.520787 CGATCGGGTTTTCGGGGAG 60.521 63.158 7.38 0.00 0.00 4.30
186 187 1.902556 GATCGGGTTTTCGGGGAGA 59.097 57.895 0.00 0.00 0.00 3.71
187 188 0.251073 GATCGGGTTTTCGGGGAGAA 59.749 55.000 0.00 0.00 37.01 2.87
188 189 0.252197 ATCGGGTTTTCGGGGAGAAG 59.748 55.000 0.00 0.00 40.40 2.85
189 190 1.376812 CGGGTTTTCGGGGAGAAGG 60.377 63.158 0.00 0.00 40.40 3.46
190 191 1.765727 GGGTTTTCGGGGAGAAGGT 59.234 57.895 0.00 0.00 40.40 3.50
191 192 0.986527 GGGTTTTCGGGGAGAAGGTA 59.013 55.000 0.00 0.00 40.40 3.08
192 193 1.065636 GGGTTTTCGGGGAGAAGGTAG 60.066 57.143 0.00 0.00 40.40 3.18
193 194 1.678123 GGTTTTCGGGGAGAAGGTAGC 60.678 57.143 0.00 0.00 40.40 3.58
194 195 0.248289 TTTTCGGGGAGAAGGTAGCG 59.752 55.000 0.00 0.00 40.40 4.26
195 196 1.610554 TTTCGGGGAGAAGGTAGCGG 61.611 60.000 0.00 0.00 40.40 5.52
196 197 2.758737 CGGGGAGAAGGTAGCGGT 60.759 66.667 0.00 0.00 0.00 5.68
197 198 2.901042 GGGGAGAAGGTAGCGGTG 59.099 66.667 0.00 0.00 0.00 4.94
198 199 2.732619 GGGGAGAAGGTAGCGGTGG 61.733 68.421 0.00 0.00 0.00 4.61
199 200 2.732619 GGGAGAAGGTAGCGGTGGG 61.733 68.421 0.00 0.00 0.00 4.61
200 201 1.684734 GGAGAAGGTAGCGGTGGGA 60.685 63.158 0.00 0.00 0.00 4.37
201 202 1.049289 GGAGAAGGTAGCGGTGGGAT 61.049 60.000 0.00 0.00 0.00 3.85
202 203 0.389757 GAGAAGGTAGCGGTGGGATC 59.610 60.000 0.00 0.00 0.00 3.36
203 204 0.032017 AGAAGGTAGCGGTGGGATCT 60.032 55.000 0.00 0.00 0.00 2.75
204 205 0.105039 GAAGGTAGCGGTGGGATCTG 59.895 60.000 0.00 0.00 0.00 2.90
205 206 1.338136 AAGGTAGCGGTGGGATCTGG 61.338 60.000 0.00 0.00 0.00 3.86
206 207 2.808206 GGTAGCGGTGGGATCTGGG 61.808 68.421 0.00 0.00 0.00 4.45
207 208 2.064581 GTAGCGGTGGGATCTGGGT 61.065 63.158 0.00 0.00 0.00 4.51
208 209 2.063979 TAGCGGTGGGATCTGGGTG 61.064 63.158 0.00 0.00 0.00 4.61
209 210 4.489771 GCGGTGGGATCTGGGTGG 62.490 72.222 0.00 0.00 0.00 4.61
210 211 2.687200 CGGTGGGATCTGGGTGGA 60.687 66.667 0.00 0.00 0.00 4.02
211 212 2.072487 CGGTGGGATCTGGGTGGAT 61.072 63.158 0.00 0.00 0.00 3.41
212 213 1.839894 GGTGGGATCTGGGTGGATC 59.160 63.158 0.00 0.00 40.78 3.36
216 217 2.427753 GATCTGGGTGGATCCGCC 59.572 66.667 32.89 32.89 45.29 6.13
217 218 3.521529 GATCTGGGTGGATCCGCCG 62.522 68.421 33.02 22.46 46.85 6.46
218 219 4.770362 TCTGGGTGGATCCGCCGA 62.770 66.667 33.02 29.33 46.85 5.54
219 220 4.530857 CTGGGTGGATCCGCCGAC 62.531 72.222 33.02 22.61 46.85 4.79
272 273 3.686854 AGGGCCCAGGGGTACGTA 61.687 66.667 27.56 0.00 37.65 3.57
273 274 3.473647 GGGCCCAGGGGTACGTAC 61.474 72.222 19.95 17.56 37.65 3.67
274 275 3.841758 GGCCCAGGGGTACGTACG 61.842 72.222 18.98 15.01 37.65 3.67
275 276 4.519437 GCCCAGGGGTACGTACGC 62.519 72.222 28.99 28.99 37.65 4.42
281 282 3.933515 GGGTACGTACGCCCCTTA 58.066 61.111 27.78 7.30 38.99 2.69
282 283 2.429927 GGGTACGTACGCCCCTTAT 58.570 57.895 27.78 6.90 38.99 1.73
283 284 0.752658 GGGTACGTACGCCCCTTATT 59.247 55.000 27.78 6.22 38.99 1.40
284 285 1.138859 GGGTACGTACGCCCCTTATTT 59.861 52.381 27.78 5.56 38.99 1.40
285 286 2.419990 GGGTACGTACGCCCCTTATTTT 60.420 50.000 27.78 4.89 38.99 1.82
286 287 3.181470 GGGTACGTACGCCCCTTATTTTA 60.181 47.826 27.78 3.98 38.99 1.52
287 288 3.802139 GGTACGTACGCCCCTTATTTTAC 59.198 47.826 16.72 6.02 0.00 2.01
288 289 3.893326 ACGTACGCCCCTTATTTTACT 57.107 42.857 16.72 0.00 0.00 2.24
289 290 4.206477 ACGTACGCCCCTTATTTTACTT 57.794 40.909 16.72 0.00 0.00 2.24
290 291 4.578871 ACGTACGCCCCTTATTTTACTTT 58.421 39.130 16.72 0.00 0.00 2.66
291 292 4.392754 ACGTACGCCCCTTATTTTACTTTG 59.607 41.667 16.72 0.00 0.00 2.77
292 293 4.392754 CGTACGCCCCTTATTTTACTTTGT 59.607 41.667 0.52 0.00 0.00 2.83
293 294 5.446340 CGTACGCCCCTTATTTTACTTTGTC 60.446 44.000 0.52 0.00 0.00 3.18
294 295 4.659115 ACGCCCCTTATTTTACTTTGTCT 58.341 39.130 0.00 0.00 0.00 3.41
297 298 4.462834 GCCCCTTATTTTACTTTGTCTGCT 59.537 41.667 0.00 0.00 0.00 4.24
306 307 7.754069 TTTTACTTTGTCTGCTGTGATTTTG 57.246 32.000 0.00 0.00 0.00 2.44
307 308 4.311816 ACTTTGTCTGCTGTGATTTTGG 57.688 40.909 0.00 0.00 0.00 3.28
314 315 3.028850 CTGCTGTGATTTTGGATGGGAT 58.971 45.455 0.00 0.00 0.00 3.85
316 317 4.806892 TGCTGTGATTTTGGATGGGATAT 58.193 39.130 0.00 0.00 0.00 1.63
317 318 4.828939 TGCTGTGATTTTGGATGGGATATC 59.171 41.667 0.00 0.00 0.00 1.63
318 319 4.828939 GCTGTGATTTTGGATGGGATATCA 59.171 41.667 4.83 0.00 0.00 2.15
319 320 5.278660 GCTGTGATTTTGGATGGGATATCAC 60.279 44.000 4.83 0.39 41.21 3.06
320 321 5.764432 TGTGATTTTGGATGGGATATCACA 58.236 37.500 10.77 10.77 45.49 3.58
321 322 6.375418 TGTGATTTTGGATGGGATATCACAT 58.625 36.000 20.55 20.55 43.88 3.21
322 323 7.525165 TGTGATTTTGGATGGGATATCACATA 58.475 34.615 20.46 5.13 43.88 2.29
328 329 5.664665 TGGATGGGATATCACATAGGAAGA 58.335 41.667 20.46 0.00 40.68 2.87
367 371 2.559698 TTCTTTGCCGGATGTTCTCA 57.440 45.000 5.05 0.00 0.00 3.27
368 372 1.808411 TCTTTGCCGGATGTTCTCAC 58.192 50.000 5.05 0.00 0.00 3.51
374 378 0.460987 CCGGATGTTCTCACCTCAGC 60.461 60.000 0.00 0.00 0.00 4.26
400 404 2.489329 CGTGTCTGAATTTTGGGAGCAT 59.511 45.455 0.00 0.00 0.00 3.79
422 431 5.614324 TTCATTATGCAGCTGGTAGTACT 57.386 39.130 17.12 0.00 0.00 2.73
423 432 6.724893 TTCATTATGCAGCTGGTAGTACTA 57.275 37.500 17.12 0.00 0.00 1.82
424 433 6.332735 TCATTATGCAGCTGGTAGTACTAG 57.667 41.667 17.12 9.22 0.00 2.57
425 434 5.833667 TCATTATGCAGCTGGTAGTACTAGT 59.166 40.000 17.12 0.00 0.00 2.57
426 435 7.002276 TCATTATGCAGCTGGTAGTACTAGTA 58.998 38.462 17.12 0.00 0.00 1.82
427 436 6.879276 TTATGCAGCTGGTAGTACTAGTAG 57.121 41.667 17.12 5.95 0.00 2.57
428 437 4.232188 TGCAGCTGGTAGTACTAGTAGT 57.768 45.455 17.12 14.57 0.00 2.73
429 438 4.197750 TGCAGCTGGTAGTACTAGTAGTC 58.802 47.826 17.12 6.16 0.00 2.59
430 439 4.080469 TGCAGCTGGTAGTACTAGTAGTCT 60.080 45.833 17.12 5.94 0.00 3.24
431 440 5.129980 TGCAGCTGGTAGTACTAGTAGTCTA 59.870 44.000 17.12 4.96 0.00 2.59
432 441 5.697633 GCAGCTGGTAGTACTAGTAGTCTAG 59.302 48.000 17.12 12.75 46.43 2.43
475 484 8.483758 ACATGTGAATTTAGGGGTTACTACTAG 58.516 37.037 0.00 0.00 0.00 2.57
508 517 7.552687 TGTAATCATCAACTCTGTTATTGGTCC 59.447 37.037 0.00 0.00 0.00 4.46
533 555 9.388506 CCCTGATCTTGTATGGTATGAATTATC 57.611 37.037 0.00 0.00 0.00 1.75
585 607 6.101650 TCTGTGCTCTGTCTGAAAAAGATA 57.898 37.500 0.00 0.00 37.23 1.98
632 995 2.951642 TGTCTTTGGCCTGAAGTTTCTG 59.048 45.455 15.93 0.00 0.00 3.02
703 1066 5.410746 CCTACCTGCAATTATATGTCAGCAG 59.589 44.000 12.38 12.38 46.55 4.24
705 1068 3.566742 CCTGCAATTATATGTCAGCAGCA 59.433 43.478 13.37 0.00 45.87 4.41
706 1069 4.534168 CTGCAATTATATGTCAGCAGCAC 58.466 43.478 0.00 0.00 42.26 4.40
707 1070 4.201657 TGCAATTATATGTCAGCAGCACT 58.798 39.130 0.00 0.00 0.00 4.40
824 1203 4.922206 TCTGCTCCTGGAATAACATGTTT 58.078 39.130 17.78 0.00 0.00 2.83
844 1223 1.617322 ACACAGCCTTCTAGACGTGA 58.383 50.000 0.00 0.00 0.00 4.35
850 1229 4.036971 ACAGCCTTCTAGACGTGATCATAC 59.963 45.833 0.00 0.00 0.00 2.39
851 1230 4.277174 CAGCCTTCTAGACGTGATCATACT 59.723 45.833 0.00 1.65 0.00 2.12
852 1231 5.470437 CAGCCTTCTAGACGTGATCATACTA 59.530 44.000 0.00 2.79 0.00 1.82
853 1232 5.703592 AGCCTTCTAGACGTGATCATACTAG 59.296 44.000 18.89 18.89 33.94 2.57
983 1385 2.239402 TCAAATGACTAGATGCTGCCCA 59.761 45.455 0.00 0.00 0.00 5.36
1035 1437 2.363975 GCCACCCCGTGATCAGGTA 61.364 63.158 13.98 0.00 35.23 3.08
1074 1476 0.331278 TGGGTGATGAACATGGGACC 59.669 55.000 0.00 0.00 0.00 4.46
1201 1603 1.092348 GCTTTACACCGGAACCATCC 58.908 55.000 9.46 0.00 42.80 3.51
1443 1845 1.680207 GATCTCCCAAAGAAGCATGGC 59.320 52.381 0.00 0.00 37.61 4.40
1543 1945 6.760298 TGAGCTTGCTACTAGATTCTTCATTG 59.240 38.462 0.00 0.00 0.00 2.82
1593 1995 2.284190 GGTCTCATTCTAGCTGGTTGC 58.716 52.381 0.00 0.00 43.29 4.17
1720 2122 4.907269 TCAACCAGGCCATTGAGATATCTA 59.093 41.667 5.01 0.00 31.29 1.98
1860 2262 2.364970 CCTTGAAATGGGTGCAGTTGAA 59.635 45.455 0.00 0.00 0.00 2.69
1894 2296 9.473007 TTGTGTGGGAAAATCTTGATATCAATA 57.527 29.630 18.26 11.97 35.02 1.90
1945 2347 3.560068 AGAAACTGTGGTAAAGCACTTCG 59.440 43.478 12.97 5.00 0.00 3.79
1995 2397 3.865745 ACTTCAAAGATAAGGCGACATCG 59.134 43.478 0.00 0.00 43.27 3.84
2023 2433 1.592223 GAGGTGGTTGAGAGGACCG 59.408 63.158 0.00 0.00 40.13 4.79
2053 2463 3.254903 GGAGTGGTTTGCCGAAAACTATT 59.745 43.478 11.76 4.77 46.27 1.73
2067 2477 5.351948 AAAACTATTGGCAGTTTGGTTGT 57.648 34.783 4.37 0.00 45.68 3.32
2116 2526 3.307339 GGAGCAAGGATCTCAGTTCTGTT 60.307 47.826 0.00 0.00 32.38 3.16
2173 2583 2.215196 GGGTTGACTTGAACGCTTACA 58.785 47.619 0.00 0.00 36.21 2.41
2280 2690 1.192146 TAGCCTGGAACCAGAACGCT 61.192 55.000 20.79 20.57 46.30 5.07
2332 2752 5.654209 AGCTCATCCAGGAAAAATTAAGGTC 59.346 40.000 0.00 0.00 0.00 3.85
2351 2771 7.483580 AAGGTCTGTACTAAATTCTAGCAGT 57.516 36.000 0.00 0.00 0.00 4.40
2367 2787 9.959721 ATTCTAGCAGTTCCTTTCTTATAAACA 57.040 29.630 0.00 0.00 0.00 2.83
2455 2892 4.517285 AGAAACGGTGATATGAAGCATGT 58.483 39.130 0.00 0.00 0.00 3.21
2621 3072 6.030849 TCGAATTTGTGTGTTAAGTTTGTGG 58.969 36.000 0.00 0.00 0.00 4.17
2669 3158 9.502091 TGTGATGCTACCCTATATTTATTTGAC 57.498 33.333 0.00 0.00 0.00 3.18
2670 3159 8.947115 GTGATGCTACCCTATATTTATTTGACC 58.053 37.037 0.00 0.00 0.00 4.02
2715 3807 3.807622 TCGAAACAGAATTCACGAGCTTT 59.192 39.130 8.44 0.00 0.00 3.51
2717 3809 4.552767 CGAAACAGAATTCACGAGCTTTGT 60.553 41.667 8.44 0.00 0.00 2.83
2718 3810 3.885484 ACAGAATTCACGAGCTTTGTG 57.115 42.857 8.44 12.46 38.70 3.33
2719 3811 3.466836 ACAGAATTCACGAGCTTTGTGA 58.533 40.909 16.19 16.19 44.17 3.58
2722 3814 4.067896 AGAATTCACGAGCTTTGTGATGT 58.932 39.130 19.54 12.39 45.10 3.06
2760 3852 0.972883 TGCGCCTTAGCCCAATTTTT 59.027 45.000 4.18 0.00 36.02 1.94
2778 3870 8.615878 CAATTTTTGGATCATCATGCCATTAT 57.384 30.769 0.00 0.00 0.00 1.28
2787 3879 7.555554 GGATCATCATGCCATTATTAAGCTACT 59.444 37.037 0.00 0.00 0.00 2.57
2804 3896 4.772100 AGCTACTTGTTTTACATGGCCAAT 59.228 37.500 10.96 3.20 0.00 3.16
2908 4000 6.370593 TCGAATACAAGAAGAAACAACATGC 58.629 36.000 0.00 0.00 0.00 4.06
2920 4012 0.447801 CAACATGCTACGCAAGGACC 59.552 55.000 0.00 0.00 43.62 4.46
3007 4099 3.620488 TGCTCCCATACTCCAATGTTTC 58.380 45.455 0.00 0.00 0.00 2.78
3022 4114 8.795786 TCCAATGTTTCTAAAAGTTGATTTCG 57.204 30.769 0.00 0.00 0.00 3.46
3031 4123 8.129161 TCTAAAAGTTGATTTCGTACGTTTCA 57.871 30.769 16.05 13.31 0.00 2.69
3108 4200 4.963318 ATAATTCAGATCCAGGCTCGAA 57.037 40.909 0.00 1.69 0.00 3.71
3159 4251 3.865446 TCCAGCATGAATAGTGTCACAG 58.135 45.455 5.62 0.00 39.69 3.66
3170 4262 6.826231 TGAATAGTGTCACAGGAAGACAAAAA 59.174 34.615 5.62 0.00 46.50 1.94
3178 4270 7.040340 TGTCACAGGAAGACAAAAACTAAAACA 60.040 33.333 0.00 0.00 42.57 2.83
3273 4365 5.881923 TTAGGGGTTGTAGATACATGTCC 57.118 43.478 0.00 0.00 35.89 4.02
3288 4380 5.381174 ACATGTCCTGTGAACATCAATTG 57.619 39.130 0.00 0.00 36.48 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.093306 TGTTGTTACCATGGCGAGAG 57.907 50.000 13.04 0.00 0.00 3.20
17 18 2.627945 GATGTTGTTACCATGGCGAGA 58.372 47.619 13.04 0.00 0.00 4.04
18 19 1.327460 CGATGTTGTTACCATGGCGAG 59.673 52.381 13.04 0.00 0.00 5.03
19 20 1.364721 CGATGTTGTTACCATGGCGA 58.635 50.000 13.04 0.00 0.00 5.54
20 21 0.376852 CCGATGTTGTTACCATGGCG 59.623 55.000 13.04 3.46 0.00 5.69
21 22 1.400494 GACCGATGTTGTTACCATGGC 59.600 52.381 13.04 0.00 0.00 4.40
22 23 1.663643 CGACCGATGTTGTTACCATGG 59.336 52.381 11.19 11.19 0.00 3.66
23 24 1.062002 GCGACCGATGTTGTTACCATG 59.938 52.381 0.00 0.00 0.00 3.66
24 25 1.365699 GCGACCGATGTTGTTACCAT 58.634 50.000 0.00 0.00 0.00 3.55
25 26 0.671163 GGCGACCGATGTTGTTACCA 60.671 55.000 0.00 0.00 0.00 3.25
26 27 1.363885 GGGCGACCGATGTTGTTACC 61.364 60.000 0.00 0.00 43.64 2.85
27 28 2.084013 GGGCGACCGATGTTGTTAC 58.916 57.895 0.00 0.00 43.64 2.50
28 29 4.602159 GGGCGACCGATGTTGTTA 57.398 55.556 0.00 0.00 43.64 2.41
39 40 2.428085 GGGAAGAGGAGAGGGCGAC 61.428 68.421 0.00 0.00 0.00 5.19
40 41 2.042843 GGGAAGAGGAGAGGGCGA 60.043 66.667 0.00 0.00 0.00 5.54
41 42 1.681486 GAAGGGAAGAGGAGAGGGCG 61.681 65.000 0.00 0.00 0.00 6.13
42 43 0.326143 AGAAGGGAAGAGGAGAGGGC 60.326 60.000 0.00 0.00 0.00 5.19
43 44 2.957474 CTAGAAGGGAAGAGGAGAGGG 58.043 57.143 0.00 0.00 0.00 4.30
44 45 2.091333 AGCTAGAAGGGAAGAGGAGAGG 60.091 54.545 0.00 0.00 0.00 3.69
45 46 3.312736 AGCTAGAAGGGAAGAGGAGAG 57.687 52.381 0.00 0.00 0.00 3.20
46 47 3.789274 ACTAGCTAGAAGGGAAGAGGAGA 59.211 47.826 27.45 0.00 0.00 3.71
47 48 4.178956 ACTAGCTAGAAGGGAAGAGGAG 57.821 50.000 27.45 0.00 0.00 3.69
48 49 4.611564 AACTAGCTAGAAGGGAAGAGGA 57.388 45.455 27.45 0.00 0.00 3.71
49 50 4.712337 TGAAACTAGCTAGAAGGGAAGAGG 59.288 45.833 27.45 0.00 0.00 3.69
50 51 5.923733 TGAAACTAGCTAGAAGGGAAGAG 57.076 43.478 27.45 0.00 0.00 2.85
51 52 6.875972 AATGAAACTAGCTAGAAGGGAAGA 57.124 37.500 27.45 3.08 0.00 2.87
52 53 8.207545 ACATAATGAAACTAGCTAGAAGGGAAG 58.792 37.037 27.45 10.82 0.00 3.46
53 54 8.090788 ACATAATGAAACTAGCTAGAAGGGAA 57.909 34.615 27.45 7.77 0.00 3.97
54 55 7.676683 ACATAATGAAACTAGCTAGAAGGGA 57.323 36.000 27.45 7.17 0.00 4.20
55 56 7.169982 CGAACATAATGAAACTAGCTAGAAGGG 59.830 40.741 27.45 1.17 0.00 3.95
56 57 7.707035 ACGAACATAATGAAACTAGCTAGAAGG 59.293 37.037 27.45 1.58 0.00 3.46
57 58 8.535592 CACGAACATAATGAAACTAGCTAGAAG 58.464 37.037 27.45 3.79 0.00 2.85
58 59 8.248253 TCACGAACATAATGAAACTAGCTAGAA 58.752 33.333 27.45 9.83 0.00 2.10
59 60 7.768240 TCACGAACATAATGAAACTAGCTAGA 58.232 34.615 27.45 4.95 0.00 2.43
60 61 7.987268 TCACGAACATAATGAAACTAGCTAG 57.013 36.000 19.44 19.44 0.00 3.42
61 62 8.942338 ATTCACGAACATAATGAAACTAGCTA 57.058 30.769 0.00 0.00 36.03 3.32
62 63 7.849804 ATTCACGAACATAATGAAACTAGCT 57.150 32.000 0.00 0.00 36.03 3.32
63 64 7.044706 GCAATTCACGAACATAATGAAACTAGC 60.045 37.037 0.00 0.00 36.03 3.42
64 65 8.177663 AGCAATTCACGAACATAATGAAACTAG 58.822 33.333 0.00 0.00 36.03 2.57
65 66 8.039603 AGCAATTCACGAACATAATGAAACTA 57.960 30.769 0.00 0.00 36.03 2.24
66 67 6.913170 AGCAATTCACGAACATAATGAAACT 58.087 32.000 0.00 0.00 36.03 2.66
67 68 7.962918 ACTAGCAATTCACGAACATAATGAAAC 59.037 33.333 0.00 0.00 36.03 2.78
68 69 8.039603 ACTAGCAATTCACGAACATAATGAAA 57.960 30.769 0.00 0.00 36.03 2.69
69 70 7.609760 ACTAGCAATTCACGAACATAATGAA 57.390 32.000 0.00 0.00 36.81 2.57
70 71 7.609760 AACTAGCAATTCACGAACATAATGA 57.390 32.000 0.00 0.00 0.00 2.57
71 72 7.429340 GGAAACTAGCAATTCACGAACATAATG 59.571 37.037 0.00 0.00 0.00 1.90
72 73 7.336931 AGGAAACTAGCAATTCACGAACATAAT 59.663 33.333 0.00 0.00 40.61 1.28
73 74 6.653320 AGGAAACTAGCAATTCACGAACATAA 59.347 34.615 0.00 0.00 40.61 1.90
74 75 6.170506 AGGAAACTAGCAATTCACGAACATA 58.829 36.000 0.00 0.00 40.61 2.29
75 76 5.003804 AGGAAACTAGCAATTCACGAACAT 58.996 37.500 0.00 0.00 40.61 2.71
76 77 4.385825 AGGAAACTAGCAATTCACGAACA 58.614 39.130 0.00 0.00 40.61 3.18
77 78 4.691216 AGAGGAAACTAGCAATTCACGAAC 59.309 41.667 0.00 0.00 44.43 3.95
78 79 4.894784 AGAGGAAACTAGCAATTCACGAA 58.105 39.130 0.00 0.00 44.43 3.85
79 80 4.537135 AGAGGAAACTAGCAATTCACGA 57.463 40.909 0.00 0.00 44.43 4.35
80 81 4.093556 GGAAGAGGAAACTAGCAATTCACG 59.906 45.833 0.00 0.00 44.43 4.35
81 82 4.093556 CGGAAGAGGAAACTAGCAATTCAC 59.906 45.833 0.00 0.00 44.43 3.18
82 83 4.020573 TCGGAAGAGGAAACTAGCAATTCA 60.021 41.667 0.00 0.00 44.43 2.57
83 84 4.504858 TCGGAAGAGGAAACTAGCAATTC 58.495 43.478 0.00 0.00 44.43 2.17
84 85 4.553330 TCGGAAGAGGAAACTAGCAATT 57.447 40.909 0.00 0.00 44.43 2.32
99 100 7.688989 CGAGTTTAACTATAGATCGATCGGAAG 59.311 40.741 19.33 18.02 0.00 3.46
100 101 7.386025 TCGAGTTTAACTATAGATCGATCGGAA 59.614 37.037 19.33 9.85 33.26 4.30
101 102 6.870439 TCGAGTTTAACTATAGATCGATCGGA 59.130 38.462 19.33 12.16 33.26 4.55
102 103 7.058298 TCGAGTTTAACTATAGATCGATCGG 57.942 40.000 19.33 12.98 33.26 4.18
110 111 9.060347 ACGGACATAATCGAGTTTAACTATAGA 57.940 33.333 6.78 0.00 0.00 1.98
111 112 9.114965 CACGGACATAATCGAGTTTAACTATAG 57.885 37.037 0.00 0.00 0.00 1.31
112 113 8.623903 ACACGGACATAATCGAGTTTAACTATA 58.376 33.333 0.00 0.00 0.00 1.31
113 114 7.486647 ACACGGACATAATCGAGTTTAACTAT 58.513 34.615 0.00 0.00 0.00 2.12
114 115 6.855836 ACACGGACATAATCGAGTTTAACTA 58.144 36.000 0.00 0.00 0.00 2.24
115 116 5.717119 ACACGGACATAATCGAGTTTAACT 58.283 37.500 0.00 0.00 0.00 2.24
116 117 5.275602 CGACACGGACATAATCGAGTTTAAC 60.276 44.000 0.00 0.00 34.77 2.01
117 118 4.794762 CGACACGGACATAATCGAGTTTAA 59.205 41.667 0.00 0.00 34.77 1.52
118 119 4.345288 CGACACGGACATAATCGAGTTTA 58.655 43.478 0.00 0.00 34.77 2.01
119 120 3.176708 CGACACGGACATAATCGAGTTT 58.823 45.455 0.00 0.00 34.77 2.66
120 121 2.793933 CGACACGGACATAATCGAGTT 58.206 47.619 0.00 0.00 34.77 3.01
121 122 1.533338 GCGACACGGACATAATCGAGT 60.533 52.381 0.00 0.00 34.77 4.18
122 123 1.121240 GCGACACGGACATAATCGAG 58.879 55.000 0.00 0.00 34.77 4.04
123 124 0.736636 AGCGACACGGACATAATCGA 59.263 50.000 0.00 0.00 34.77 3.59
124 125 0.846401 CAGCGACACGGACATAATCG 59.154 55.000 0.00 0.00 35.91 3.34
125 126 1.209128 CCAGCGACACGGACATAATC 58.791 55.000 0.00 0.00 0.00 1.75
126 127 0.535335 ACCAGCGACACGGACATAAT 59.465 50.000 0.00 0.00 0.00 1.28
127 128 0.389296 CACCAGCGACACGGACATAA 60.389 55.000 0.00 0.00 0.00 1.90
128 129 1.214325 CACCAGCGACACGGACATA 59.786 57.895 0.00 0.00 0.00 2.29
129 130 2.048222 CACCAGCGACACGGACAT 60.048 61.111 0.00 0.00 0.00 3.06
130 131 4.293648 CCACCAGCGACACGGACA 62.294 66.667 0.00 0.00 0.00 4.02
133 134 4.619227 AACCCACCAGCGACACGG 62.619 66.667 0.00 0.00 0.00 4.94
134 135 2.590575 AAACCCACCAGCGACACG 60.591 61.111 0.00 0.00 0.00 4.49
135 136 1.507141 CTCAAACCCACCAGCGACAC 61.507 60.000 0.00 0.00 0.00 3.67
136 137 1.227823 CTCAAACCCACCAGCGACA 60.228 57.895 0.00 0.00 0.00 4.35
137 138 1.966451 CCTCAAACCCACCAGCGAC 60.966 63.158 0.00 0.00 0.00 5.19
138 139 2.429930 CCTCAAACCCACCAGCGA 59.570 61.111 0.00 0.00 0.00 4.93
139 140 3.365265 GCCTCAAACCCACCAGCG 61.365 66.667 0.00 0.00 0.00 5.18
140 141 3.365265 CGCCTCAAACCCACCAGC 61.365 66.667 0.00 0.00 0.00 4.85
141 142 2.113139 ACGCCTCAAACCCACCAG 59.887 61.111 0.00 0.00 0.00 4.00
142 143 2.203280 CACGCCTCAAACCCACCA 60.203 61.111 0.00 0.00 0.00 4.17
143 144 1.388837 AAACACGCCTCAAACCCACC 61.389 55.000 0.00 0.00 0.00 4.61
144 145 0.248866 CAAACACGCCTCAAACCCAC 60.249 55.000 0.00 0.00 0.00 4.61
145 146 0.394488 TCAAACACGCCTCAAACCCA 60.394 50.000 0.00 0.00 0.00 4.51
146 147 0.958822 ATCAAACACGCCTCAAACCC 59.041 50.000 0.00 0.00 0.00 4.11
147 148 1.068541 GGATCAAACACGCCTCAAACC 60.069 52.381 0.00 0.00 0.00 3.27
148 149 1.399727 CGGATCAAACACGCCTCAAAC 60.400 52.381 0.00 0.00 0.00 2.93
149 150 0.871722 CGGATCAAACACGCCTCAAA 59.128 50.000 0.00 0.00 0.00 2.69
150 151 0.034198 TCGGATCAAACACGCCTCAA 59.966 50.000 0.00 0.00 0.00 3.02
151 152 0.249120 ATCGGATCAAACACGCCTCA 59.751 50.000 0.00 0.00 0.00 3.86
152 153 0.931005 GATCGGATCAAACACGCCTC 59.069 55.000 13.02 0.00 0.00 4.70
153 154 0.806102 CGATCGGATCAAACACGCCT 60.806 55.000 17.53 0.00 0.00 5.52
154 155 1.636340 CGATCGGATCAAACACGCC 59.364 57.895 17.53 0.00 0.00 5.68
155 156 1.636340 CCGATCGGATCAAACACGC 59.364 57.895 30.62 0.00 37.50 5.34
156 157 0.459585 ACCCGATCGGATCAAACACG 60.460 55.000 35.42 16.97 37.50 4.49
157 158 1.734163 AACCCGATCGGATCAAACAC 58.266 50.000 35.42 0.00 37.50 3.32
158 159 2.483014 AAACCCGATCGGATCAAACA 57.517 45.000 35.42 0.00 37.50 2.83
159 160 2.222953 CGAAAACCCGATCGGATCAAAC 60.223 50.000 35.42 18.75 37.50 2.93
160 161 2.004017 CGAAAACCCGATCGGATCAAA 58.996 47.619 35.42 0.00 37.50 2.69
161 162 1.647346 CGAAAACCCGATCGGATCAA 58.353 50.000 35.42 0.00 37.50 2.57
162 163 3.355816 CGAAAACCCGATCGGATCA 57.644 52.632 35.42 0.00 37.50 2.92
167 168 1.520787 CTCCCCGAAAACCCGATCG 60.521 63.158 8.51 8.51 38.74 3.69
168 169 0.251073 TTCTCCCCGAAAACCCGATC 59.749 55.000 0.00 0.00 0.00 3.69
169 170 0.252197 CTTCTCCCCGAAAACCCGAT 59.748 55.000 0.00 0.00 0.00 4.18
170 171 1.675219 CTTCTCCCCGAAAACCCGA 59.325 57.895 0.00 0.00 0.00 5.14
171 172 1.376812 CCTTCTCCCCGAAAACCCG 60.377 63.158 0.00 0.00 0.00 5.28
172 173 0.986527 TACCTTCTCCCCGAAAACCC 59.013 55.000 0.00 0.00 0.00 4.11
173 174 1.678123 GCTACCTTCTCCCCGAAAACC 60.678 57.143 0.00 0.00 0.00 3.27
174 175 1.735386 GCTACCTTCTCCCCGAAAAC 58.265 55.000 0.00 0.00 0.00 2.43
175 176 0.248289 CGCTACCTTCTCCCCGAAAA 59.752 55.000 0.00 0.00 0.00 2.29
176 177 1.610554 CCGCTACCTTCTCCCCGAAA 61.611 60.000 0.00 0.00 0.00 3.46
177 178 2.056223 CCGCTACCTTCTCCCCGAA 61.056 63.158 0.00 0.00 0.00 4.30
178 179 2.441532 CCGCTACCTTCTCCCCGA 60.442 66.667 0.00 0.00 0.00 5.14
179 180 2.758737 ACCGCTACCTTCTCCCCG 60.759 66.667 0.00 0.00 0.00 5.73
180 181 2.732619 CCACCGCTACCTTCTCCCC 61.733 68.421 0.00 0.00 0.00 4.81
181 182 2.732619 CCCACCGCTACCTTCTCCC 61.733 68.421 0.00 0.00 0.00 4.30
182 183 1.049289 ATCCCACCGCTACCTTCTCC 61.049 60.000 0.00 0.00 0.00 3.71
183 184 0.389757 GATCCCACCGCTACCTTCTC 59.610 60.000 0.00 0.00 0.00 2.87
184 185 0.032017 AGATCCCACCGCTACCTTCT 60.032 55.000 0.00 0.00 0.00 2.85
185 186 0.105039 CAGATCCCACCGCTACCTTC 59.895 60.000 0.00 0.00 0.00 3.46
186 187 1.338136 CCAGATCCCACCGCTACCTT 61.338 60.000 0.00 0.00 0.00 3.50
187 188 1.762460 CCAGATCCCACCGCTACCT 60.762 63.158 0.00 0.00 0.00 3.08
188 189 2.808206 CCCAGATCCCACCGCTACC 61.808 68.421 0.00 0.00 0.00 3.18
189 190 2.064581 ACCCAGATCCCACCGCTAC 61.065 63.158 0.00 0.00 0.00 3.58
190 191 2.063979 CACCCAGATCCCACCGCTA 61.064 63.158 0.00 0.00 0.00 4.26
191 192 3.402681 CACCCAGATCCCACCGCT 61.403 66.667 0.00 0.00 0.00 5.52
192 193 4.489771 CCACCCAGATCCCACCGC 62.490 72.222 0.00 0.00 0.00 5.68
193 194 2.044806 GATCCACCCAGATCCCACCG 62.045 65.000 0.00 0.00 37.31 4.94
194 195 1.839894 GATCCACCCAGATCCCACC 59.160 63.158 0.00 0.00 37.31 4.61
199 200 2.427753 GGCGGATCCACCCAGATC 59.572 66.667 13.41 0.00 41.69 2.75
200 201 3.550431 CGGCGGATCCACCCAGAT 61.550 66.667 13.36 0.00 34.64 2.90
201 202 4.770362 TCGGCGGATCCACCCAGA 62.770 66.667 13.36 10.15 34.64 3.86
202 203 4.530857 GTCGGCGGATCCACCCAG 62.531 72.222 13.36 8.21 34.64 4.45
254 255 3.988050 TACGTACCCCTGGGCCCTG 62.988 68.421 25.70 23.45 39.32 4.45
255 256 3.686854 TACGTACCCCTGGGCCCT 61.687 66.667 25.70 4.09 39.32 5.19
256 257 3.473647 GTACGTACCCCTGGGCCC 61.474 72.222 17.59 17.59 39.32 5.80
257 258 3.841758 CGTACGTACCCCTGGGCC 61.842 72.222 19.67 0.00 39.32 5.80
258 259 4.519437 GCGTACGTACCCCTGGGC 62.519 72.222 19.67 12.09 39.32 5.36
259 260 3.841758 GGCGTACGTACCCCTGGG 61.842 72.222 19.96 5.50 42.03 4.45
260 261 3.841758 GGGCGTACGTACCCCTGG 61.842 72.222 30.15 15.80 40.56 4.45
264 265 0.752658 AATAAGGGGCGTACGTACCC 59.247 55.000 30.74 30.74 46.24 3.69
265 266 2.602257 AAATAAGGGGCGTACGTACC 57.398 50.000 19.67 18.47 0.00 3.34
266 267 4.682787 AGTAAAATAAGGGGCGTACGTAC 58.317 43.478 17.90 15.90 0.00 3.67
267 268 5.337578 AAGTAAAATAAGGGGCGTACGTA 57.662 39.130 17.90 0.66 0.00 3.57
268 269 3.893326 AGTAAAATAAGGGGCGTACGT 57.107 42.857 17.90 0.00 0.00 3.57
269 270 4.392754 ACAAAGTAAAATAAGGGGCGTACG 59.607 41.667 11.84 11.84 0.00 3.67
270 271 5.645067 AGACAAAGTAAAATAAGGGGCGTAC 59.355 40.000 0.00 0.00 0.00 3.67
271 272 5.644636 CAGACAAAGTAAAATAAGGGGCGTA 59.355 40.000 0.00 0.00 0.00 4.42
272 273 4.457949 CAGACAAAGTAAAATAAGGGGCGT 59.542 41.667 0.00 0.00 0.00 5.68
273 274 4.674362 GCAGACAAAGTAAAATAAGGGGCG 60.674 45.833 0.00 0.00 0.00 6.13
274 275 4.462834 AGCAGACAAAGTAAAATAAGGGGC 59.537 41.667 0.00 0.00 0.00 5.80
275 276 5.476945 ACAGCAGACAAAGTAAAATAAGGGG 59.523 40.000 0.00 0.00 0.00 4.79
276 277 6.206634 TCACAGCAGACAAAGTAAAATAAGGG 59.793 38.462 0.00 0.00 0.00 3.95
277 278 7.202016 TCACAGCAGACAAAGTAAAATAAGG 57.798 36.000 0.00 0.00 0.00 2.69
278 279 9.683069 AAATCACAGCAGACAAAGTAAAATAAG 57.317 29.630 0.00 0.00 0.00 1.73
280 281 9.462174 CAAAATCACAGCAGACAAAGTAAAATA 57.538 29.630 0.00 0.00 0.00 1.40
281 282 7.439056 CCAAAATCACAGCAGACAAAGTAAAAT 59.561 33.333 0.00 0.00 0.00 1.82
282 283 6.756074 CCAAAATCACAGCAGACAAAGTAAAA 59.244 34.615 0.00 0.00 0.00 1.52
283 284 6.096141 TCCAAAATCACAGCAGACAAAGTAAA 59.904 34.615 0.00 0.00 0.00 2.01
284 285 5.592282 TCCAAAATCACAGCAGACAAAGTAA 59.408 36.000 0.00 0.00 0.00 2.24
285 286 5.129634 TCCAAAATCACAGCAGACAAAGTA 58.870 37.500 0.00 0.00 0.00 2.24
286 287 3.953612 TCCAAAATCACAGCAGACAAAGT 59.046 39.130 0.00 0.00 0.00 2.66
287 288 4.572985 TCCAAAATCACAGCAGACAAAG 57.427 40.909 0.00 0.00 0.00 2.77
288 289 4.262121 CCATCCAAAATCACAGCAGACAAA 60.262 41.667 0.00 0.00 0.00 2.83
289 290 3.256383 CCATCCAAAATCACAGCAGACAA 59.744 43.478 0.00 0.00 0.00 3.18
290 291 2.821378 CCATCCAAAATCACAGCAGACA 59.179 45.455 0.00 0.00 0.00 3.41
291 292 2.165030 CCCATCCAAAATCACAGCAGAC 59.835 50.000 0.00 0.00 0.00 3.51
292 293 2.041485 TCCCATCCAAAATCACAGCAGA 59.959 45.455 0.00 0.00 0.00 4.26
293 294 2.449464 TCCCATCCAAAATCACAGCAG 58.551 47.619 0.00 0.00 0.00 4.24
294 295 2.601240 TCCCATCCAAAATCACAGCA 57.399 45.000 0.00 0.00 0.00 4.41
297 298 5.764432 TGTGATATCCCATCCAAAATCACA 58.236 37.500 10.90 10.90 46.49 3.58
306 307 6.385176 TCATCTTCCTATGTGATATCCCATCC 59.615 42.308 3.76 0.00 0.00 3.51
307 308 7.429374 TCATCTTCCTATGTGATATCCCATC 57.571 40.000 3.76 0.00 0.00 3.51
314 315 8.105197 CCAAATCCATCATCTTCCTATGTGATA 58.895 37.037 0.00 0.00 30.63 2.15
316 317 6.301486 CCAAATCCATCATCTTCCTATGTGA 58.699 40.000 0.00 0.00 0.00 3.58
317 318 5.048224 GCCAAATCCATCATCTTCCTATGTG 60.048 44.000 0.00 0.00 0.00 3.21
318 319 5.075493 GCCAAATCCATCATCTTCCTATGT 58.925 41.667 0.00 0.00 0.00 2.29
319 320 4.155462 CGCCAAATCCATCATCTTCCTATG 59.845 45.833 0.00 0.00 0.00 2.23
320 321 4.202503 ACGCCAAATCCATCATCTTCCTAT 60.203 41.667 0.00 0.00 0.00 2.57
321 322 3.136443 ACGCCAAATCCATCATCTTCCTA 59.864 43.478 0.00 0.00 0.00 2.94
322 323 2.092212 ACGCCAAATCCATCATCTTCCT 60.092 45.455 0.00 0.00 0.00 3.36
328 329 1.184431 TTGCACGCCAAATCCATCAT 58.816 45.000 0.00 0.00 0.00 2.45
357 361 2.763448 ACTAGCTGAGGTGAGAACATCC 59.237 50.000 0.00 0.00 0.00 3.51
361 365 1.813786 ACGACTAGCTGAGGTGAGAAC 59.186 52.381 0.00 0.00 0.00 3.01
367 371 1.169577 CAGACACGACTAGCTGAGGT 58.830 55.000 0.00 0.00 0.00 3.85
368 372 1.454201 TCAGACACGACTAGCTGAGG 58.546 55.000 0.00 0.00 32.85 3.86
374 378 4.566004 TCCCAAAATTCAGACACGACTAG 58.434 43.478 0.00 0.00 0.00 2.57
400 404 5.614324 AGTACTACCAGCTGCATAATGAA 57.386 39.130 8.66 0.00 0.00 2.57
422 431 4.114597 AGGGGTGTGGTACTAGACTACTA 58.885 47.826 6.47 0.00 40.14 1.82
423 432 2.924977 AGGGGTGTGGTACTAGACTACT 59.075 50.000 6.47 2.69 40.14 2.57
424 433 3.053768 AGAGGGGTGTGGTACTAGACTAC 60.054 52.174 6.47 0.00 39.90 2.73
425 434 3.053842 CAGAGGGGTGTGGTACTAGACTA 60.054 52.174 6.47 0.00 0.00 2.59
426 435 2.001558 AGAGGGGTGTGGTACTAGACT 58.998 52.381 6.47 0.00 0.00 3.24
427 436 2.100989 CAGAGGGGTGTGGTACTAGAC 58.899 57.143 0.00 0.00 0.00 2.59
428 437 1.997791 TCAGAGGGGTGTGGTACTAGA 59.002 52.381 0.00 0.00 0.00 2.43
429 438 2.496470 GTTCAGAGGGGTGTGGTACTAG 59.504 54.545 0.00 0.00 0.00 2.57
430 439 2.158279 TGTTCAGAGGGGTGTGGTACTA 60.158 50.000 0.00 0.00 0.00 1.82
431 440 1.349067 GTTCAGAGGGGTGTGGTACT 58.651 55.000 0.00 0.00 0.00 2.73
432 441 1.053424 TGTTCAGAGGGGTGTGGTAC 58.947 55.000 0.00 0.00 0.00 3.34
433 442 1.628340 CATGTTCAGAGGGGTGTGGTA 59.372 52.381 0.00 0.00 0.00 3.25
434 443 0.401738 CATGTTCAGAGGGGTGTGGT 59.598 55.000 0.00 0.00 0.00 4.16
435 444 0.401738 ACATGTTCAGAGGGGTGTGG 59.598 55.000 0.00 0.00 0.00 4.17
436 445 1.072173 TCACATGTTCAGAGGGGTGTG 59.928 52.381 0.00 0.00 38.55 3.82
437 446 1.434188 TCACATGTTCAGAGGGGTGT 58.566 50.000 0.00 0.00 0.00 4.16
475 484 6.868622 ACAGAGTTGATGATTACAGGAGTAC 58.131 40.000 0.00 0.00 0.00 2.73
508 517 9.948964 TGATAATTCATACCATACAAGATCAGG 57.051 33.333 0.00 0.00 0.00 3.86
546 568 9.225436 CAGAGCACAGATACTGTCTATATAAGA 57.775 37.037 1.22 0.00 43.43 2.10
547 569 9.008965 ACAGAGCACAGATACTGTCTATATAAG 57.991 37.037 1.22 0.00 43.43 1.73
559 581 5.928839 TCTTTTTCAGACAGAGCACAGATAC 59.071 40.000 0.00 0.00 0.00 2.24
585 607 2.836372 TCAGAGAGGCACTGAACATGAT 59.164 45.455 0.00 0.00 41.55 2.45
658 1021 9.120538 GGTAGGAATTGCTACATAATCAAAGAA 57.879 33.333 30.65 0.00 0.00 2.52
784 1163 6.264067 GGAGCAGAAGTGGCAATAAATAATCT 59.736 38.462 0.00 0.00 0.00 2.40
824 1203 2.786777 TCACGTCTAGAAGGCTGTGTA 58.213 47.619 10.53 0.00 30.50 2.90
983 1385 1.176527 CATGCTTGTCCCGTTTCCAT 58.823 50.000 0.00 0.00 0.00 3.41
1035 1437 0.681733 ACAGCTTGGTGACTCGACAT 59.318 50.000 6.83 0.00 0.00 3.06
1074 1476 2.005451 CTCCTCTTGATGTTTGAGGCG 58.995 52.381 0.00 0.00 45.04 5.52
1320 1722 2.540101 GCCAAACTTATCATCGGACTCG 59.460 50.000 0.00 0.00 37.82 4.18
1443 1845 2.266055 GTTGACTGCCCTCCTCGG 59.734 66.667 0.00 0.00 0.00 4.63
1459 1861 2.258726 GGCGGGAAAAGCGAAGTGT 61.259 57.895 0.00 0.00 35.00 3.55
1593 1995 2.376808 ATTCAGTCTTGAGGTCAGCG 57.623 50.000 0.00 0.00 34.15 5.18
1720 2122 4.437682 TGACATTGGAAAGGACTTCAGT 57.562 40.909 0.00 0.00 35.55 3.41
1770 2172 6.374417 TGGCTTATCTCCTCAAAGTACTTT 57.626 37.500 15.22 15.22 0.00 2.66
1894 2296 7.930865 GGTAGCAGAATTCTTCAAGATGTATCT 59.069 37.037 4.86 0.00 39.22 1.98
1922 2324 4.035208 CGAAGTGCTTTACCACAGTTTCTT 59.965 41.667 0.00 0.00 38.18 2.52
1945 2347 3.655810 CTGCCTCCTGTGCCTCGTC 62.656 68.421 0.00 0.00 0.00 4.20
1995 2397 1.152756 AACCACCTCCAACACTGCC 60.153 57.895 0.00 0.00 0.00 4.85
2000 2402 0.764890 CCTCTCAACCACCTCCAACA 59.235 55.000 0.00 0.00 0.00 3.33
2002 2404 1.056660 GTCCTCTCAACCACCTCCAA 58.943 55.000 0.00 0.00 0.00 3.53
2023 2433 1.656441 CAAACCACTCCAGCAGCAC 59.344 57.895 0.00 0.00 0.00 4.40
2053 2463 2.804167 CGCACAACCAAACTGCCA 59.196 55.556 0.00 0.00 0.00 4.92
2116 2526 0.544357 CCTATCCCACCATAGCCCGA 60.544 60.000 0.00 0.00 0.00 5.14
2173 2583 3.458831 ACTCCTCATCAGATGGGTCTTT 58.541 45.455 9.56 0.00 30.42 2.52
2286 2703 2.589610 TAGATGCCTCGGCCTCCTGT 62.590 60.000 0.00 0.00 41.09 4.00
2332 2752 8.779354 AAAGGAACTGCTAGAATTTAGTACAG 57.221 34.615 0.00 0.00 40.86 2.74
2390 2810 9.677567 GCTACAGTAAGAAAATTGAATCAAACA 57.322 29.630 0.00 0.00 0.00 2.83
2410 2830 1.546476 AGTCTTCCCGTCTTGCTACAG 59.454 52.381 0.00 0.00 0.00 2.74
2621 3072 1.936547 CTTCGGTTCAGATAAGCAGCC 59.063 52.381 0.00 0.00 0.00 4.85
2669 3158 9.736023 CGATAAATGATTTTAGGGAGAAAAAGG 57.264 33.333 0.00 0.00 32.29 3.11
2707 3799 1.229428 CCACACATCACAAAGCTCGT 58.771 50.000 0.00 0.00 0.00 4.18
2708 3800 0.110056 GCCACACATCACAAAGCTCG 60.110 55.000 0.00 0.00 0.00 5.03
2715 3807 1.270274 GATGCAAAGCCACACATCACA 59.730 47.619 0.00 0.00 38.97 3.58
2717 3809 0.889994 GGATGCAAAGCCACACATCA 59.110 50.000 0.00 0.00 40.53 3.07
2718 3810 0.179156 CGGATGCAAAGCCACACATC 60.179 55.000 0.00 0.00 38.53 3.06
2719 3811 1.885157 CGGATGCAAAGCCACACAT 59.115 52.632 0.00 0.00 0.00 3.21
2760 3852 6.250711 AGCTTAATAATGGCATGATGATCCA 58.749 36.000 0.00 0.00 0.00 3.41
2778 3870 5.770663 TGGCCATGTAAAACAAGTAGCTTAA 59.229 36.000 0.00 0.00 0.00 1.85
2787 3879 3.643320 TCCACATTGGCCATGTAAAACAA 59.357 39.130 6.09 0.00 45.06 2.83
2816 3908 1.302431 CACCTGGTCGATTGTGCCA 60.302 57.895 0.00 0.00 0.00 4.92
2908 4000 4.650754 ATACTTAGTGGTCCTTGCGTAG 57.349 45.455 0.00 0.00 0.00 3.51
3007 4099 8.756376 TTGAAACGTACGAAATCAACTTTTAG 57.244 30.769 24.41 0.00 0.00 1.85
3095 4187 2.151202 TGTGTTTTTCGAGCCTGGATC 58.849 47.619 0.82 0.82 0.00 3.36
3101 4193 3.896648 TCTCAATGTGTTTTTCGAGCC 57.103 42.857 0.00 0.00 0.00 4.70
3102 4194 5.034152 TGTTTCTCAATGTGTTTTTCGAGC 58.966 37.500 0.00 0.00 0.00 5.03
3137 4229 4.449131 CTGTGACACTATTCATGCTGGAT 58.551 43.478 7.20 0.00 0.00 3.41
3145 4237 5.545063 TTGTCTTCCTGTGACACTATTCA 57.455 39.130 7.20 0.00 43.13 2.57
3231 4323 7.550196 CCCCTAAAAATGTCAGATCCAAAATTG 59.450 37.037 0.00 0.00 0.00 2.32
3246 4338 8.519799 ACATGTATCTACAACCCCTAAAAATG 57.480 34.615 0.00 0.00 39.99 2.32
3250 4342 5.968167 AGGACATGTATCTACAACCCCTAAA 59.032 40.000 0.00 0.00 39.99 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.