Multiple sequence alignment - TraesCS3A01G477200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G477200 chr3A 100.000 4995 0 0 1 4995 709071945 709066951 0.000000e+00 9225.0
1 TraesCS3A01G477200 chr3A 87.097 93 9 3 168 258 177112487 177112396 8.850000e-18 102.0
2 TraesCS3A01G477200 chr3D 94.991 2935 106 12 992 3924 573921648 573918753 0.000000e+00 4567.0
3 TraesCS3A01G477200 chr3D 88.563 682 35 10 263 911 573922323 573921652 0.000000e+00 787.0
4 TraesCS3A01G477200 chr3D 94.316 475 24 3 3993 4466 573912230 573911758 0.000000e+00 725.0
5 TraesCS3A01G477200 chr3D 84.211 247 39 0 1649 1895 514680942 514680696 1.800000e-59 241.0
6 TraesCS3A01G477200 chr3B 96.195 2129 76 4 1326 3452 763226839 763228964 0.000000e+00 3478.0
7 TraesCS3A01G477200 chr3B 91.160 871 46 6 3516 4366 763229058 763229917 0.000000e+00 1153.0
8 TraesCS3A01G477200 chr3B 89.346 413 30 5 4443 4849 763230257 763230661 1.600000e-139 507.0
9 TraesCS3A01G477200 chr3B 84.685 444 23 14 263 687 763225702 763226119 7.790000e-108 401.0
10 TraesCS3A01G477200 chr3B 81.731 520 29 20 779 1292 763226379 763226838 1.700000e-99 374.0
11 TraesCS3A01G477200 chr3B 89.524 105 8 2 4891 4995 763230783 763230884 4.060000e-26 130.0
12 TraesCS3A01G477200 chr3B 78.395 162 20 13 4628 4782 17036588 17036741 1.910000e-14 91.6
13 TraesCS3A01G477200 chr3B 96.226 53 1 1 4369 4420 763230206 763230258 8.910000e-13 86.1
14 TraesCS3A01G477200 chr2B 80.123 488 77 12 1431 1899 785984549 785984063 3.700000e-91 346.0
15 TraesCS3A01G477200 chr2B 81.081 111 16 5 4661 4770 523080696 523080590 3.200000e-12 84.2
16 TraesCS3A01G477200 chr2B 97.826 46 1 0 134 179 769490320 769490365 4.150000e-11 80.5
17 TraesCS3A01G477200 chr2B 80.180 111 17 4 4661 4770 523078456 523078350 1.490000e-10 78.7
18 TraesCS3A01G477200 chr1D 86.312 263 36 0 1644 1906 7372271 7372533 2.280000e-73 287.0
19 TraesCS3A01G477200 chr1D 90.000 90 9 0 4842 4931 482101126 482101215 3.160000e-22 117.0
20 TraesCS3A01G477200 chr1D 88.372 86 8 2 175 258 464288588 464288673 8.850000e-18 102.0
21 TraesCS3A01G477200 chr1D 87.273 55 7 0 68 122 87066400 87066346 4.170000e-06 63.9
22 TraesCS3A01G477200 chr1A 85.878 262 37 0 1645 1906 9532815 9532554 3.810000e-71 279.0
23 TraesCS3A01G477200 chr1A 86.957 92 10 2 168 258 588010744 588010654 8.850000e-18 102.0
24 TraesCS3A01G477200 chr1A 82.301 113 13 5 30 137 120378395 120378505 1.910000e-14 91.6
25 TraesCS3A01G477200 chr1B 85.171 263 39 0 1644 1906 9647615 9647877 2.290000e-68 270.0
26 TraesCS3A01G477200 chr6D 76.891 476 85 11 1443 1895 426109778 426109305 3.860000e-61 246.0
27 TraesCS3A01G477200 chr6D 94.118 51 2 1 134 183 472504271 472504321 5.360000e-10 76.8
28 TraesCS3A01G477200 chr6D 95.000 40 2 0 4083 4122 12560094 12560055 4.170000e-06 63.9
29 TraesCS3A01G477200 chr7B 80.986 284 54 0 1644 1927 745446456 745446739 5.030000e-55 226.0
30 TraesCS3A01G477200 chr5B 81.683 202 22 9 1 187 223958701 223958500 2.410000e-33 154.0
31 TraesCS3A01G477200 chr5B 93.103 58 2 2 132 187 223957663 223957606 3.200000e-12 84.2
32 TraesCS3A01G477200 chr5B 97.561 41 1 0 68 108 610296140 610296100 2.490000e-08 71.3
33 TraesCS3A01G477200 chr5B 100.000 35 0 0 224 258 337159873 337159839 1.160000e-06 65.8
34 TraesCS3A01G477200 chr6A 80.180 222 19 16 4430 4629 13785502 13785284 5.210000e-30 143.0
35 TraesCS3A01G477200 chr6A 79.508 122 21 3 4661 4781 33916169 33916051 3.200000e-12 84.2
36 TraesCS3A01G477200 chr6A 78.689 122 22 3 4661 4781 33918290 33918172 1.490000e-10 78.7
37 TraesCS3A01G477200 chr2A 83.453 139 20 2 1 137 651135639 651135776 5.250000e-25 126.0
38 TraesCS3A01G477200 chr2A 96.000 50 2 0 132 181 10978613 10978662 1.150000e-11 82.4
39 TraesCS3A01G477200 chr2A 93.617 47 2 1 141 186 724591193 724591147 8.970000e-08 69.4
40 TraesCS3A01G477200 chr4A 83.333 126 20 1 2 127 89019914 89020038 1.140000e-21 115.0
41 TraesCS3A01G477200 chr4A 81.034 116 17 4 4661 4775 715943693 715943582 2.480000e-13 87.9
42 TraesCS3A01G477200 chr4A 81.707 82 11 4 4843 4923 106101399 106101477 1.160000e-06 65.8
43 TraesCS3A01G477200 chr7D 87.778 90 11 0 4842 4931 623354303 623354214 6.840000e-19 106.0
44 TraesCS3A01G477200 chr6B 88.372 86 8 2 175 258 537452708 537452623 8.850000e-18 102.0
45 TraesCS3A01G477200 chr6B 86.585 82 5 4 4085 4161 21009070 21009150 8.910000e-13 86.1
46 TraesCS3A01G477200 chr6B 75.926 162 24 13 4629 4783 706024434 706024587 8.970000e-08 69.4
47 TraesCS3A01G477200 chr6B 75.625 160 24 11 4631 4783 706025228 706025379 1.160000e-06 65.8
48 TraesCS3A01G477200 chrUn 88.095 84 9 1 4842 4925 87112775 87112857 1.140000e-16 99.0
49 TraesCS3A01G477200 chr5D 85.417 96 12 2 175 268 558966819 558966914 1.140000e-16 99.0
50 TraesCS3A01G477200 chr7A 97.917 48 1 0 132 179 682268284 682268237 3.200000e-12 84.2
51 TraesCS3A01G477200 chr7A 95.918 49 2 0 132 180 569392764 569392716 4.150000e-11 80.5
52 TraesCS3A01G477200 chr4B 95.918 49 2 0 132 180 621846166 621846214 4.150000e-11 80.5
53 TraesCS3A01G477200 chr2D 85.897 78 8 3 4847 4923 467181318 467181243 4.150000e-11 80.5
54 TraesCS3A01G477200 chr2D 95.238 42 1 1 218 258 492711675 492711634 1.160000e-06 65.8
55 TraesCS3A01G477200 chr4D 88.060 67 6 2 4848 4913 137275279 137275214 1.490000e-10 78.7
56 TraesCS3A01G477200 chr4D 84.337 83 9 4 4842 4923 360836450 360836529 1.490000e-10 78.7
57 TraesCS3A01G477200 chr4D 84.932 73 7 4 4842 4913 191160211 191160280 2.490000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G477200 chr3A 709066951 709071945 4994 True 9225.000000 9225 100.000000 1 4995 1 chr3A.!!$R2 4994
1 TraesCS3A01G477200 chr3D 573918753 573922323 3570 True 2677.000000 4567 91.777000 263 3924 2 chr3D.!!$R3 3661
2 TraesCS3A01G477200 chr3B 763225702 763230884 5182 False 875.585714 3478 89.838143 263 4995 7 chr3B.!!$F2 4732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.107214 TTGGACTGGGAATGGATCGC 60.107 55.0 0.00 0.00 41.21 4.58 F
175 176 0.255890 GCCCCATTGGAGTTGCTCTA 59.744 55.0 3.62 0.00 35.39 2.43 F
1911 2175 0.112412 TGGGAGCTTTGAAACCCTCC 59.888 55.0 7.39 10.04 42.49 4.30 F
2364 2628 0.179215 GTTGAAGATGCGAAGGTGCG 60.179 55.0 0.00 0.00 37.81 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 2175 0.182537 TGTTGTCCAGTGGAACCCTG 59.817 55.000 15.09 0.0 37.80 4.45 R
2150 2414 3.004106 GCAATATGATGCCACTCCTTGTC 59.996 47.826 0.00 0.0 40.49 3.18 R
3400 3664 0.031857 CCTCTAGATGTCAGCTGCGG 59.968 60.000 9.47 0.0 0.00 5.69 R
4030 4371 0.178998 GCCAGGGACATGATGATGCT 60.179 55.000 0.00 0.0 32.14 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.274281 AAAATGGAGGGAAATGGTGGT 57.726 42.857 0.00 0.00 0.00 4.16
21 22 2.236489 AATGGAGGGAAATGGTGGTG 57.764 50.000 0.00 0.00 0.00 4.17
22 23 0.336048 ATGGAGGGAAATGGTGGTGG 59.664 55.000 0.00 0.00 0.00 4.61
23 24 1.682344 GGAGGGAAATGGTGGTGGC 60.682 63.158 0.00 0.00 0.00 5.01
24 25 1.384191 GAGGGAAATGGTGGTGGCT 59.616 57.895 0.00 0.00 0.00 4.75
25 26 0.967380 GAGGGAAATGGTGGTGGCTG 60.967 60.000 0.00 0.00 0.00 4.85
26 27 1.228862 GGGAAATGGTGGTGGCTGT 60.229 57.895 0.00 0.00 0.00 4.40
27 28 1.250840 GGGAAATGGTGGTGGCTGTC 61.251 60.000 0.00 0.00 0.00 3.51
28 29 0.539438 GGAAATGGTGGTGGCTGTCA 60.539 55.000 0.00 0.00 0.00 3.58
29 30 0.598065 GAAATGGTGGTGGCTGTCAC 59.402 55.000 3.25 3.25 45.34 3.67
36 37 2.571757 GTGGCTGTCACCGATCGA 59.428 61.111 18.66 0.00 40.39 3.59
37 38 1.805945 GTGGCTGTCACCGATCGAC 60.806 63.158 18.66 7.65 40.39 4.20
38 39 2.579787 GGCTGTCACCGATCGACG 60.580 66.667 18.66 7.07 42.18 5.12
54 55 4.772231 CGGACCCGGGGAGAGGAA 62.772 72.222 27.92 0.00 35.56 3.36
55 56 2.040779 GGACCCGGGGAGAGGAAT 60.041 66.667 27.92 0.00 0.00 3.01
56 57 1.235112 GGACCCGGGGAGAGGAATA 59.765 63.158 27.92 0.00 0.00 1.75
57 58 0.832559 GGACCCGGGGAGAGGAATAG 60.833 65.000 27.92 0.00 0.00 1.73
58 59 0.832559 GACCCGGGGAGAGGAATAGG 60.833 65.000 27.92 0.00 0.00 2.57
59 60 2.217745 CCCGGGGAGAGGAATAGGC 61.218 68.421 14.71 0.00 0.00 3.93
60 61 2.574955 CCGGGGAGAGGAATAGGCG 61.575 68.421 0.00 0.00 0.00 5.52
61 62 2.744377 GGGGAGAGGAATAGGCGC 59.256 66.667 0.00 0.00 0.00 6.53
62 63 2.340443 GGGAGAGGAATAGGCGCG 59.660 66.667 0.00 0.00 0.00 6.86
63 64 2.499827 GGGAGAGGAATAGGCGCGT 61.500 63.158 8.43 8.08 0.00 6.01
64 65 1.300233 GGAGAGGAATAGGCGCGTG 60.300 63.158 13.84 0.00 0.00 5.34
65 66 1.951631 GAGAGGAATAGGCGCGTGC 60.952 63.158 13.78 13.78 41.71 5.34
78 79 4.129737 CGTGCCCGTCCATCTCGT 62.130 66.667 0.00 0.00 0.00 4.18
79 80 2.509336 GTGCCCGTCCATCTCGTG 60.509 66.667 0.00 0.00 0.00 4.35
80 81 2.994995 TGCCCGTCCATCTCGTGT 60.995 61.111 0.00 0.00 0.00 4.49
81 82 2.202756 GCCCGTCCATCTCGTGTC 60.203 66.667 0.00 0.00 0.00 3.67
82 83 2.711922 GCCCGTCCATCTCGTGTCT 61.712 63.158 0.00 0.00 0.00 3.41
83 84 1.139734 CCCGTCCATCTCGTGTCTG 59.860 63.158 0.00 0.00 0.00 3.51
84 85 1.517257 CCGTCCATCTCGTGTCTGC 60.517 63.158 0.00 0.00 0.00 4.26
85 86 1.869574 CGTCCATCTCGTGTCTGCG 60.870 63.158 0.00 0.00 0.00 5.18
86 87 2.161486 GTCCATCTCGTGTCTGCGC 61.161 63.158 0.00 0.00 0.00 6.09
87 88 2.887568 CCATCTCGTGTCTGCGCC 60.888 66.667 4.18 0.00 0.00 6.53
88 89 3.250323 CATCTCGTGTCTGCGCCG 61.250 66.667 4.18 0.00 0.00 6.46
89 90 3.440415 ATCTCGTGTCTGCGCCGA 61.440 61.111 4.18 0.00 0.00 5.54
90 91 2.775856 ATCTCGTGTCTGCGCCGAT 61.776 57.895 4.18 0.00 0.00 4.18
91 92 2.943680 ATCTCGTGTCTGCGCCGATG 62.944 60.000 4.18 0.00 0.00 3.84
94 95 3.422303 GTGTCTGCGCCGATGCAA 61.422 61.111 4.18 0.00 45.74 4.08
95 96 2.667874 TGTCTGCGCCGATGCAAA 60.668 55.556 4.18 0.00 45.74 3.68
96 97 2.039974 TGTCTGCGCCGATGCAAAT 61.040 52.632 4.18 0.00 45.74 2.32
97 98 1.297893 GTCTGCGCCGATGCAAATC 60.298 57.895 4.18 0.00 45.74 2.17
98 99 2.025156 CTGCGCCGATGCAAATCC 59.975 61.111 4.18 0.00 45.74 3.01
99 100 3.795280 CTGCGCCGATGCAAATCCG 62.795 63.158 4.18 0.00 45.74 4.18
100 101 4.612536 GCGCCGATGCAAATCCGG 62.613 66.667 13.53 13.53 45.51 5.14
103 104 3.513225 CCGATGCAAATCCGGCTT 58.487 55.556 0.00 0.00 36.62 4.35
104 105 2.701587 CCGATGCAAATCCGGCTTA 58.298 52.632 0.00 0.00 36.62 3.09
105 106 1.021202 CCGATGCAAATCCGGCTTAA 58.979 50.000 0.00 0.00 36.62 1.85
106 107 1.403679 CCGATGCAAATCCGGCTTAAA 59.596 47.619 0.00 0.00 36.62 1.52
107 108 2.159310 CCGATGCAAATCCGGCTTAAAA 60.159 45.455 0.00 0.00 36.62 1.52
108 109 3.490761 CCGATGCAAATCCGGCTTAAAAT 60.491 43.478 0.00 0.00 36.62 1.82
109 110 4.111916 CGATGCAAATCCGGCTTAAAATT 58.888 39.130 0.00 0.00 0.00 1.82
110 111 4.026640 CGATGCAAATCCGGCTTAAAATTG 60.027 41.667 0.00 0.00 0.00 2.32
111 112 3.594134 TGCAAATCCGGCTTAAAATTGG 58.406 40.909 0.00 0.00 0.00 3.16
112 113 3.259374 TGCAAATCCGGCTTAAAATTGGA 59.741 39.130 0.00 0.00 0.00 3.53
113 114 3.616821 GCAAATCCGGCTTAAAATTGGAC 59.383 43.478 0.00 0.00 0.00 4.02
114 115 4.620567 GCAAATCCGGCTTAAAATTGGACT 60.621 41.667 0.00 0.00 0.00 3.85
115 116 4.718940 AATCCGGCTTAAAATTGGACTG 57.281 40.909 0.00 0.00 0.00 3.51
116 117 2.442413 TCCGGCTTAAAATTGGACTGG 58.558 47.619 0.00 0.00 0.00 4.00
117 118 1.476488 CCGGCTTAAAATTGGACTGGG 59.524 52.381 0.00 0.00 0.00 4.45
118 119 2.442413 CGGCTTAAAATTGGACTGGGA 58.558 47.619 0.00 0.00 0.00 4.37
119 120 2.823154 CGGCTTAAAATTGGACTGGGAA 59.177 45.455 0.00 0.00 0.00 3.97
120 121 3.447229 CGGCTTAAAATTGGACTGGGAAT 59.553 43.478 0.00 0.00 0.00 3.01
121 122 4.677779 CGGCTTAAAATTGGACTGGGAATG 60.678 45.833 0.00 0.00 0.00 2.67
122 123 4.383010 GGCTTAAAATTGGACTGGGAATGG 60.383 45.833 0.00 0.00 0.00 3.16
123 124 4.466015 GCTTAAAATTGGACTGGGAATGGA 59.534 41.667 0.00 0.00 0.00 3.41
124 125 5.129320 GCTTAAAATTGGACTGGGAATGGAT 59.871 40.000 0.00 0.00 0.00 3.41
125 126 6.683861 GCTTAAAATTGGACTGGGAATGGATC 60.684 42.308 0.00 0.00 0.00 3.36
126 127 2.645838 ATTGGACTGGGAATGGATCG 57.354 50.000 0.00 0.00 0.00 3.69
127 128 0.107214 TTGGACTGGGAATGGATCGC 60.107 55.000 0.00 0.00 41.21 4.58
128 129 1.227973 GGACTGGGAATGGATCGCC 60.228 63.158 0.00 0.00 40.15 5.54
129 130 1.227973 GACTGGGAATGGATCGCCC 60.228 63.158 0.00 0.00 40.15 6.13
130 131 2.281070 CTGGGAATGGATCGCCCG 60.281 66.667 0.00 0.00 45.08 6.13
131 132 4.562425 TGGGAATGGATCGCCCGC 62.562 66.667 0.00 0.00 45.08 6.13
134 135 4.602259 GAATGGATCGCCCGCGGA 62.602 66.667 30.73 7.23 40.25 5.54
135 136 4.910585 AATGGATCGCCCGCGGAC 62.911 66.667 30.73 16.23 40.25 4.79
169 170 2.355115 GGTCGCCCCATTGGAGTT 59.645 61.111 3.62 0.00 35.07 3.01
170 171 2.046285 GGTCGCCCCATTGGAGTTG 61.046 63.158 3.62 0.00 35.07 3.16
171 172 2.361104 TCGCCCCATTGGAGTTGC 60.361 61.111 3.62 0.53 35.07 4.17
172 173 2.361610 CGCCCCATTGGAGTTGCT 60.362 61.111 3.62 0.00 35.39 3.91
173 174 2.409870 CGCCCCATTGGAGTTGCTC 61.410 63.158 3.62 0.00 35.39 4.26
174 175 1.000396 GCCCCATTGGAGTTGCTCT 60.000 57.895 3.62 0.00 35.39 4.09
175 176 0.255890 GCCCCATTGGAGTTGCTCTA 59.744 55.000 3.62 0.00 35.39 2.43
176 177 1.340991 GCCCCATTGGAGTTGCTCTAA 60.341 52.381 3.62 0.00 35.57 2.10
177 178 2.648059 CCCCATTGGAGTTGCTCTAAG 58.352 52.381 3.62 0.00 34.66 2.18
178 179 2.648059 CCCATTGGAGTTGCTCTAAGG 58.352 52.381 3.62 1.39 34.66 2.69
179 180 2.648059 CCATTGGAGTTGCTCTAAGGG 58.352 52.381 10.54 10.54 43.81 3.95
180 181 2.648059 CATTGGAGTTGCTCTAAGGGG 58.352 52.381 1.82 0.00 34.66 4.79
181 182 1.742308 TTGGAGTTGCTCTAAGGGGT 58.258 50.000 0.00 0.00 0.00 4.95
182 183 1.276622 TGGAGTTGCTCTAAGGGGTC 58.723 55.000 0.00 0.00 0.00 4.46
183 184 1.203313 TGGAGTTGCTCTAAGGGGTCT 60.203 52.381 0.00 0.00 0.00 3.85
184 185 1.483004 GGAGTTGCTCTAAGGGGTCTC 59.517 57.143 0.00 0.00 0.00 3.36
185 186 1.483004 GAGTTGCTCTAAGGGGTCTCC 59.517 57.143 0.00 0.00 0.00 3.71
197 198 2.473576 GGGTCTCCCTACCATAGTGT 57.526 55.000 0.00 0.00 41.34 3.55
198 199 3.607490 GGGTCTCCCTACCATAGTGTA 57.393 52.381 0.00 0.00 41.34 2.90
199 200 4.129317 GGGTCTCCCTACCATAGTGTAT 57.871 50.000 0.00 0.00 41.34 2.29
200 201 4.087907 GGGTCTCCCTACCATAGTGTATC 58.912 52.174 0.00 0.00 41.34 2.24
201 202 3.757493 GGTCTCCCTACCATAGTGTATCG 59.243 52.174 0.00 0.00 39.50 2.92
202 203 4.396522 GTCTCCCTACCATAGTGTATCGT 58.603 47.826 0.00 0.00 0.00 3.73
203 204 4.826183 GTCTCCCTACCATAGTGTATCGTT 59.174 45.833 0.00 0.00 0.00 3.85
204 205 5.048852 GTCTCCCTACCATAGTGTATCGTTC 60.049 48.000 0.00 0.00 0.00 3.95
205 206 3.817084 TCCCTACCATAGTGTATCGTTCG 59.183 47.826 0.00 0.00 0.00 3.95
206 207 3.817084 CCCTACCATAGTGTATCGTTCGA 59.183 47.826 0.00 0.00 0.00 3.71
207 208 4.320057 CCCTACCATAGTGTATCGTTCGAC 60.320 50.000 0.00 0.00 0.00 4.20
208 209 3.705043 ACCATAGTGTATCGTTCGACC 57.295 47.619 0.00 0.00 0.00 4.79
209 210 3.018856 ACCATAGTGTATCGTTCGACCA 58.981 45.455 0.00 0.00 0.00 4.02
210 211 3.635373 ACCATAGTGTATCGTTCGACCAT 59.365 43.478 0.00 0.00 0.00 3.55
211 212 3.981416 CCATAGTGTATCGTTCGACCATG 59.019 47.826 0.00 0.00 0.00 3.66
212 213 4.499188 CCATAGTGTATCGTTCGACCATGT 60.499 45.833 0.00 0.00 0.00 3.21
213 214 5.278120 CCATAGTGTATCGTTCGACCATGTA 60.278 44.000 0.00 0.00 0.00 2.29
214 215 4.707030 AGTGTATCGTTCGACCATGTAA 57.293 40.909 0.00 0.00 0.00 2.41
215 216 5.258456 AGTGTATCGTTCGACCATGTAAT 57.742 39.130 0.00 0.00 0.00 1.89
216 217 5.657474 AGTGTATCGTTCGACCATGTAATT 58.343 37.500 0.00 0.00 0.00 1.40
217 218 6.103997 AGTGTATCGTTCGACCATGTAATTT 58.896 36.000 0.00 0.00 0.00 1.82
218 219 6.035650 AGTGTATCGTTCGACCATGTAATTTG 59.964 38.462 0.00 0.00 0.00 2.32
219 220 4.875544 ATCGTTCGACCATGTAATTTGG 57.124 40.909 0.00 0.00 40.26 3.28
228 229 5.289083 ACCATGTAATTTGGTTTGTTGCT 57.711 34.783 0.00 0.00 45.19 3.91
229 230 5.679601 ACCATGTAATTTGGTTTGTTGCTT 58.320 33.333 0.00 0.00 45.19 3.91
230 231 6.118852 ACCATGTAATTTGGTTTGTTGCTTT 58.881 32.000 0.00 0.00 45.19 3.51
231 232 7.275920 ACCATGTAATTTGGTTTGTTGCTTTA 58.724 30.769 0.00 0.00 45.19 1.85
232 233 7.936301 ACCATGTAATTTGGTTTGTTGCTTTAT 59.064 29.630 0.00 0.00 45.19 1.40
233 234 8.782144 CCATGTAATTTGGTTTGTTGCTTTATT 58.218 29.630 0.00 0.00 0.00 1.40
251 252 7.145187 CTTTATTTATAAAGCGGGCGAAAAC 57.855 36.000 8.78 0.00 41.69 2.43
252 253 3.490800 TTTATAAAGCGGGCGAAAACC 57.509 42.857 0.00 0.00 0.00 3.27
253 254 2.406596 TATAAAGCGGGCGAAAACCT 57.593 45.000 0.00 0.00 0.00 3.50
254 255 2.406596 ATAAAGCGGGCGAAAACCTA 57.593 45.000 0.00 0.00 0.00 3.08
255 256 2.406596 TAAAGCGGGCGAAAACCTAT 57.593 45.000 0.00 0.00 0.00 2.57
256 257 1.541379 AAAGCGGGCGAAAACCTATT 58.459 45.000 0.00 0.00 0.00 1.73
257 258 1.541379 AAGCGGGCGAAAACCTATTT 58.459 45.000 0.00 0.00 0.00 1.40
258 259 1.541379 AGCGGGCGAAAACCTATTTT 58.459 45.000 0.00 0.00 40.83 1.82
259 260 2.713877 AGCGGGCGAAAACCTATTTTA 58.286 42.857 0.00 0.00 38.17 1.52
260 261 3.083293 AGCGGGCGAAAACCTATTTTAA 58.917 40.909 0.00 0.00 38.17 1.52
261 262 3.128068 AGCGGGCGAAAACCTATTTTAAG 59.872 43.478 0.00 0.00 38.17 1.85
305 306 2.444256 GGACCATTCTAGGCCGGCT 61.444 63.158 28.56 15.07 0.00 5.52
312 313 1.971505 TTCTAGGCCGGCTCCATGTG 61.972 60.000 28.56 9.84 0.00 3.21
313 314 2.687200 TAGGCCGGCTCCATGTGT 60.687 61.111 28.56 1.91 0.00 3.72
314 315 2.650813 CTAGGCCGGCTCCATGTGTC 62.651 65.000 28.56 5.83 0.00 3.67
316 317 4.408821 GCCGGCTCCATGTGTCCA 62.409 66.667 22.15 0.00 0.00 4.02
317 318 2.350895 CCGGCTCCATGTGTCCAA 59.649 61.111 0.00 0.00 0.00 3.53
318 319 1.303236 CCGGCTCCATGTGTCCAAA 60.303 57.895 0.00 0.00 0.00 3.28
319 320 0.893270 CCGGCTCCATGTGTCCAAAA 60.893 55.000 0.00 0.00 0.00 2.44
321 322 1.327303 GGCTCCATGTGTCCAAAACA 58.673 50.000 0.00 0.00 34.78 2.83
333 334 4.067896 TGTCCAAAACAAAGCAAAGCAAA 58.932 34.783 0.00 0.00 34.03 3.68
368 381 1.886222 CGGTCCCAGGCTTGAAAATCA 60.886 52.381 0.00 0.00 0.00 2.57
369 382 2.247358 GGTCCCAGGCTTGAAAATCAA 58.753 47.619 0.00 0.00 34.79 2.57
413 427 2.231478 ACACTGTGAGAATACGGTCCAG 59.769 50.000 15.86 0.00 38.07 3.86
644 663 6.655425 GGTCAGAGGAGCAAGTTATTACTTTT 59.345 38.462 0.00 0.00 41.85 2.27
674 693 1.134530 CTAGAGGAACAAGCGCGTCG 61.135 60.000 8.43 0.00 0.00 5.12
703 723 2.994995 TGTGGCCATCTCCGACGT 60.995 61.111 9.72 0.00 0.00 4.34
704 724 2.509336 GTGGCCATCTCCGACGTG 60.509 66.667 9.72 0.00 0.00 4.49
708 728 4.873129 CCATCTCCGACGTGGGCG 62.873 72.222 12.40 5.90 44.93 6.13
709 729 3.822192 CATCTCCGACGTGGGCGA 61.822 66.667 11.84 11.84 42.00 5.54
710 730 3.823330 ATCTCCGACGTGGGCGAC 61.823 66.667 11.69 0.00 42.00 5.19
792 1050 3.983344 CAGCAAGAAACATTTTTCCTCCG 59.017 43.478 0.68 0.00 42.00 4.63
794 1052 3.735746 GCAAGAAACATTTTTCCTCCGTG 59.264 43.478 0.68 0.00 42.00 4.94
798 1056 1.905637 ACATTTTTCCTCCGTGTCCC 58.094 50.000 0.00 0.00 0.00 4.46
847 1105 0.958876 GACGATTTTGCCCTCGGGTT 60.959 55.000 3.54 0.00 39.16 4.11
913 1171 2.011222 TGAAACGACCAAACACAGGAC 58.989 47.619 0.00 0.00 0.00 3.85
957 1215 1.576356 CCGTGCTCTGCTTCCTTATC 58.424 55.000 0.00 0.00 0.00 1.75
963 1221 1.521457 CTGCTTCCTTATCGGCGCA 60.521 57.895 10.83 0.00 37.37 6.09
964 1222 1.766143 CTGCTTCCTTATCGGCGCAC 61.766 60.000 10.83 0.00 35.81 5.34
965 1223 2.534903 GCTTCCTTATCGGCGCACC 61.535 63.158 10.83 0.00 0.00 5.01
984 1242 4.778415 CCACCTCGCCGTGTCTCG 62.778 72.222 1.76 0.00 39.52 4.04
985 1243 3.733960 CACCTCGCCGTGTCTCGA 61.734 66.667 0.00 0.00 42.86 4.04
988 1246 2.098680 CTCGCCGTGTCTCGAGTC 59.901 66.667 13.13 7.62 44.95 3.36
1017 1275 0.753867 TGAGACCGCGCCCATATTTA 59.246 50.000 0.00 0.00 0.00 1.40
1030 1288 5.121611 CGCCCATATTTATTGTCGCTGATAA 59.878 40.000 0.00 0.00 0.00 1.75
1031 1289 6.546395 GCCCATATTTATTGTCGCTGATAAG 58.454 40.000 0.00 0.00 0.00 1.73
1033 1291 7.333423 GCCCATATTTATTGTCGCTGATAAGTA 59.667 37.037 0.00 0.00 0.00 2.24
1034 1292 8.873830 CCCATATTTATTGTCGCTGATAAGTAG 58.126 37.037 0.00 0.00 0.00 2.57
1041 1299 7.667043 ATTGTCGCTGATAAGTAGTTTTTCA 57.333 32.000 0.00 0.00 0.00 2.69
1042 1300 7.667043 TTGTCGCTGATAAGTAGTTTTTCAT 57.333 32.000 0.00 0.00 0.00 2.57
1047 1305 9.607285 TCGCTGATAAGTAGTTTTTCATTTTTC 57.393 29.630 0.00 0.00 0.00 2.29
1088 1346 9.278734 CTTTTCTTCTTTGAGAAAACTGTGTAC 57.721 33.333 8.30 0.00 45.66 2.90
1090 1348 7.539712 TCTTCTTTGAGAAAACTGTGTACTG 57.460 36.000 0.00 0.00 33.19 2.74
1111 1369 5.473504 ACTGGCGAATTTCTGAAAGTACATT 59.526 36.000 8.95 0.00 33.76 2.71
1115 1373 6.251549 GCGAATTTCTGAAAGTACATTCCTC 58.748 40.000 8.95 0.00 33.76 3.71
1139 1397 4.448537 TTGCATTTCCCTTTTATGTCCG 57.551 40.909 0.00 0.00 0.00 4.79
1141 1399 2.100749 GCATTTCCCTTTTATGTCCGGG 59.899 50.000 0.00 0.00 38.07 5.73
1248 1507 9.646427 TTGAATTTACACTTGCAAAACTAAACT 57.354 25.926 0.00 0.00 0.00 2.66
1258 1517 9.083080 ACTTGCAAAACTAAACTAAAATGACAC 57.917 29.630 0.00 0.00 0.00 3.67
1292 1555 5.201713 TCAAGTGGTAGCAGTAGCATATC 57.798 43.478 1.99 0.00 45.49 1.63
1619 1883 2.042843 ACCCTGGGCTACCTCTCG 60.043 66.667 14.08 0.00 37.76 4.04
1634 1898 4.916293 TCGCGCCATGAGGATGCC 62.916 66.667 0.00 0.00 36.89 4.40
1829 2093 0.992802 GCGTGGAGCTTCTAGTTTCG 59.007 55.000 0.00 0.00 44.04 3.46
1911 2175 0.112412 TGGGAGCTTTGAAACCCTCC 59.888 55.000 7.39 10.04 42.49 4.30
2308 2572 4.314740 TTTTGTTGGAAGTATGTGCCAC 57.685 40.909 0.00 0.00 0.00 5.01
2364 2628 0.179215 GTTGAAGATGCGAAGGTGCG 60.179 55.000 0.00 0.00 37.81 5.34
2450 2714 6.327104 AGCCATATCTAAATTCAATTGGGCAA 59.673 34.615 5.42 0.00 38.93 4.52
2475 2739 6.714952 ACAACTTCCACAGGTGGTTGGATT 62.715 45.833 17.46 4.78 45.79 3.01
2522 2786 1.443702 TCGACGAGCAATGACCACG 60.444 57.895 0.00 0.00 0.00 4.94
2642 2906 2.329379 GAGACGATGGAGTGTGTTGTC 58.671 52.381 0.00 0.00 0.00 3.18
2661 2925 4.906618 TGTCAAGGGAATTACTGACTTCC 58.093 43.478 10.49 0.00 40.22 3.46
2792 3056 0.394192 TCACAGAGGCACACTTGAGG 59.606 55.000 0.00 0.00 0.00 3.86
3065 3329 3.967987 AGGAGTTGGTAGACATATGGACC 59.032 47.826 7.80 11.53 0.00 4.46
3275 3539 2.012673 CCTGCACCAAGATAAGAGCAC 58.987 52.381 0.00 0.00 0.00 4.40
3283 3547 3.390639 CCAAGATAAGAGCACCAGATCCT 59.609 47.826 0.00 0.00 0.00 3.24
3324 3588 4.528206 TGCAGACTCCTCTGTTCTTCATTA 59.472 41.667 0.00 0.00 45.30 1.90
3432 3696 8.533569 TGACATCTAGAGGTATGTGACATTTA 57.466 34.615 10.54 0.00 36.48 1.40
3433 3697 8.977412 TGACATCTAGAGGTATGTGACATTTAA 58.023 33.333 10.54 0.00 36.48 1.52
3501 3765 5.421693 TGAATAGGCAGTGCAAAAATACCAT 59.578 36.000 18.61 0.00 0.00 3.55
3502 3766 3.874392 AGGCAGTGCAAAAATACCATC 57.126 42.857 18.61 0.00 0.00 3.51
3512 3776 5.590663 TGCAAAAATACCATCCGCTGTATTA 59.409 36.000 0.00 0.00 36.82 0.98
3513 3777 5.912955 GCAAAAATACCATCCGCTGTATTAC 59.087 40.000 0.00 0.00 36.82 1.89
3614 3943 8.918202 TGAAGCCAGAAAAAGAACTTAATCTA 57.082 30.769 0.00 0.00 0.00 1.98
3625 3954 6.831664 AGAACTTAATCTATCCATGTGGGT 57.168 37.500 0.00 0.00 38.11 4.51
3784 4113 7.177392 AGCAATTCAGGCTCAAAGTTTATAACT 59.823 33.333 0.00 0.00 39.63 2.24
3830 4160 7.365741 GCTATGTGTGAAATGATCCCAAATAG 58.634 38.462 0.00 0.00 37.01 1.73
3834 4164 3.066621 GTGAAATGATCCCAAATAGCGCA 59.933 43.478 11.47 0.00 0.00 6.09
3837 4167 2.418368 TGATCCCAAATAGCGCAACT 57.582 45.000 11.47 0.00 0.00 3.16
3876 4206 1.462283 CGTCACATTCTCTGGCTGTTG 59.538 52.381 0.00 0.00 0.00 3.33
3937 4267 4.132336 ACTAAGAGTTTCCGTTTGAACCC 58.868 43.478 0.00 0.00 31.05 4.11
3947 4277 1.532868 CGTTTGAACCCTCAGAAGCTG 59.467 52.381 0.00 0.00 31.69 4.24
3954 4284 0.177604 CCCTCAGAAGCTGCTAGGTG 59.822 60.000 13.62 7.31 0.00 4.00
3964 4294 2.370189 AGCTGCTAGGTGACAAAAGTCT 59.630 45.455 0.00 0.00 0.00 3.24
3974 4304 5.357032 AGGTGACAAAAGTCTAAAACACTGG 59.643 40.000 0.00 0.00 0.00 4.00
3996 4337 8.228206 ACTGGAATAGAGTAAGTATCATCCTCA 58.772 37.037 0.00 0.00 0.00 3.86
4007 4348 7.440523 AAGTATCATCCTCACAAACTTGTTC 57.559 36.000 0.00 0.00 39.91 3.18
4059 4400 2.307496 TGTCCCTGGCAATCACAAAT 57.693 45.000 0.00 0.00 0.00 2.32
4060 4401 3.448093 TGTCCCTGGCAATCACAAATA 57.552 42.857 0.00 0.00 0.00 1.40
4063 4404 4.776837 TGTCCCTGGCAATCACAAATAATT 59.223 37.500 0.00 0.00 0.00 1.40
4064 4405 5.105392 TGTCCCTGGCAATCACAAATAATTC 60.105 40.000 0.00 0.00 0.00 2.17
4066 4407 6.321181 GTCCCTGGCAATCACAAATAATTCTA 59.679 38.462 0.00 0.00 0.00 2.10
4067 4408 6.894654 TCCCTGGCAATCACAAATAATTCTAA 59.105 34.615 0.00 0.00 0.00 2.10
4068 4409 7.068593 TCCCTGGCAATCACAAATAATTCTAAG 59.931 37.037 0.00 0.00 0.00 2.18
4069 4410 7.068593 CCCTGGCAATCACAAATAATTCTAAGA 59.931 37.037 0.00 0.00 0.00 2.10
4070 4411 7.917505 CCTGGCAATCACAAATAATTCTAAGAC 59.082 37.037 0.00 0.00 0.00 3.01
4071 4412 7.771183 TGGCAATCACAAATAATTCTAAGACC 58.229 34.615 0.00 0.00 0.00 3.85
4072 4413 7.395772 TGGCAATCACAAATAATTCTAAGACCA 59.604 33.333 0.00 0.00 0.00 4.02
4073 4414 7.702348 GGCAATCACAAATAATTCTAAGACCAC 59.298 37.037 0.00 0.00 0.00 4.16
4116 4457 5.468072 AGAACAGTTCTGCAACTTATGACTG 59.532 40.000 15.41 0.00 41.24 3.51
4128 4469 5.923733 ACTTATGACTGGATCTTCGAAGT 57.076 39.130 23.85 11.98 0.00 3.01
4129 4470 5.897050 ACTTATGACTGGATCTTCGAAGTC 58.103 41.667 23.85 18.89 39.59 3.01
4136 4477 2.231478 TGGATCTTCGAAGTCAGGTCAC 59.769 50.000 23.85 8.29 0.00 3.67
4229 4570 5.928976 TGATTTGTGATGGTGAGGGTATAG 58.071 41.667 0.00 0.00 0.00 1.31
4242 4583 2.766828 AGGGTATAGTGGCAGAGTTCAC 59.233 50.000 0.00 0.00 0.00 3.18
4243 4584 2.158943 GGGTATAGTGGCAGAGTTCACC 60.159 54.545 0.00 0.00 34.67 4.02
4292 4633 8.612619 CACTAGTTAAGGCTACATTACAATTGG 58.387 37.037 10.83 0.00 0.00 3.16
4297 4638 4.344104 AGGCTACATTACAATTGGCTGTT 58.656 39.130 10.83 0.00 0.00 3.16
4300 4641 6.095440 AGGCTACATTACAATTGGCTGTTAAG 59.905 38.462 10.83 6.57 0.00 1.85
4302 4643 6.127730 GCTACATTACAATTGGCTGTTAAGGT 60.128 38.462 10.83 8.96 0.00 3.50
4316 4657 3.971305 TGTTAAGGTGGAAGAGGAGTGAA 59.029 43.478 0.00 0.00 0.00 3.18
4349 4698 4.325972 TGACAAGCAAATCAGTATCAGCA 58.674 39.130 0.00 0.00 0.00 4.41
4356 4705 4.409570 CAAATCAGTATCAGCAGCACAAC 58.590 43.478 0.00 0.00 0.00 3.32
4361 4710 0.253044 TATCAGCAGCACAACCCCTC 59.747 55.000 0.00 0.00 0.00 4.30
4366 4715 2.061220 CAGCACAACCCCTCAGAGA 58.939 57.895 0.00 0.00 0.00 3.10
4368 4717 1.140312 AGCACAACCCCTCAGAGAAA 58.860 50.000 0.00 0.00 0.00 2.52
4369 4718 1.494721 AGCACAACCCCTCAGAGAAAA 59.505 47.619 0.00 0.00 0.00 2.29
4370 4719 2.091885 AGCACAACCCCTCAGAGAAAAA 60.092 45.455 0.00 0.00 0.00 1.94
4371 4720 2.294512 GCACAACCCCTCAGAGAAAAAG 59.705 50.000 0.00 0.00 0.00 2.27
4391 5027 1.461127 GCAGAGGTTTGACACGTCATC 59.539 52.381 0.00 0.00 41.95 2.92
4418 5054 2.110753 TAGGCATAGGGGCACATGTA 57.889 50.000 0.00 0.00 46.44 2.29
4419 5055 1.449271 AGGCATAGGGGCACATGTAT 58.551 50.000 0.00 0.00 46.44 2.29
4420 5056 1.782752 AGGCATAGGGGCACATGTATT 59.217 47.619 0.00 0.00 46.44 1.89
4421 5057 2.986019 AGGCATAGGGGCACATGTATTA 59.014 45.455 0.00 0.00 46.44 0.98
4422 5058 3.397618 AGGCATAGGGGCACATGTATTAA 59.602 43.478 0.00 0.00 46.44 1.40
4423 5059 4.044571 AGGCATAGGGGCACATGTATTAAT 59.955 41.667 0.00 0.00 46.44 1.40
4424 5060 4.772100 GGCATAGGGGCACATGTATTAATT 59.228 41.667 0.00 0.00 42.77 1.40
4425 5061 5.949354 GGCATAGGGGCACATGTATTAATTA 59.051 40.000 0.00 0.00 42.77 1.40
4426 5062 6.127730 GGCATAGGGGCACATGTATTAATTAC 60.128 42.308 0.00 0.00 42.77 1.89
4427 5063 6.659242 GCATAGGGGCACATGTATTAATTACT 59.341 38.462 0.00 0.00 0.00 2.24
4428 5064 7.148239 GCATAGGGGCACATGTATTAATTACTC 60.148 40.741 0.00 0.00 0.00 2.59
4429 5065 6.260700 AGGGGCACATGTATTAATTACTCA 57.739 37.500 0.00 0.00 0.00 3.41
4430 5066 6.062095 AGGGGCACATGTATTAATTACTCAC 58.938 40.000 0.00 0.00 0.00 3.51
4431 5067 6.062095 GGGGCACATGTATTAATTACTCACT 58.938 40.000 0.00 0.00 0.00 3.41
4432 5068 6.204882 GGGGCACATGTATTAATTACTCACTC 59.795 42.308 0.00 0.00 0.00 3.51
4433 5069 6.204882 GGGCACATGTATTAATTACTCACTCC 59.795 42.308 0.00 0.00 0.00 3.85
4434 5070 6.992715 GGCACATGTATTAATTACTCACTCCT 59.007 38.462 0.00 0.00 0.00 3.69
4435 5071 7.041780 GGCACATGTATTAATTACTCACTCCTG 60.042 40.741 0.00 0.00 0.00 3.86
4436 5072 7.710907 GCACATGTATTAATTACTCACTCCTGA 59.289 37.037 0.00 0.00 0.00 3.86
4437 5073 9.770097 CACATGTATTAATTACTCACTCCTGAT 57.230 33.333 0.00 0.00 0.00 2.90
4447 5083 9.775854 AATTACTCACTCCTGATAATCATGAAG 57.224 33.333 0.00 0.00 0.00 3.02
4485 5121 9.928236 GTTAATCTCTGAGAAAAAGATACATGC 57.072 33.333 12.00 0.00 0.00 4.06
4489 5125 6.037940 TCTCTGAGAAAAAGATACATGCATGC 59.962 38.462 26.53 11.82 0.00 4.06
4494 5130 7.820386 TGAGAAAAAGATACATGCATGCATTTT 59.180 29.630 30.32 24.42 33.90 1.82
4511 5147 5.177142 TGCATTTTTGTTGTCATGTATGCAC 59.823 36.000 0.00 0.00 41.31 4.57
4541 5177 3.867493 TGTTTGCATCTGAAGCTAGATCG 59.133 43.478 6.43 0.00 35.28 3.69
4564 5200 4.860907 GTCATGGAATCAAATGCAGTTGTC 59.139 41.667 24.60 16.18 0.00 3.18
4572 5208 1.153353 AATGCAGTTGTCGGGTTACG 58.847 50.000 0.00 0.00 46.11 3.18
4583 5219 6.821665 AGTTGTCGGGTTACGTTAGTACTATA 59.178 38.462 2.79 0.00 44.69 1.31
4609 5245 2.679355 TTCGTTGATTTCCGTTGCAG 57.321 45.000 0.00 0.00 0.00 4.41
4719 5361 6.547510 ACTTGCCATCTACTTCAAGTCTTTTT 59.452 34.615 0.00 0.00 43.80 1.94
4759 5401 7.730784 ACTCCTATATATACCCCATATGAGTGC 59.269 40.741 3.65 0.00 32.20 4.40
4761 5403 6.787458 CCTATATATACCCCATATGAGTGCCA 59.213 42.308 3.65 0.00 31.96 4.92
4762 5404 6.753913 ATATATACCCCATATGAGTGCCAG 57.246 41.667 3.65 0.00 31.96 4.85
4763 5405 2.487746 TACCCCATATGAGTGCCAGA 57.512 50.000 3.65 0.00 0.00 3.86
4764 5406 1.825105 ACCCCATATGAGTGCCAGAT 58.175 50.000 3.65 0.00 0.00 2.90
4765 5407 1.701847 ACCCCATATGAGTGCCAGATC 59.298 52.381 3.65 0.00 0.00 2.75
4766 5408 1.701292 CCCCATATGAGTGCCAGATCA 59.299 52.381 3.65 0.00 0.00 2.92
4767 5409 2.107031 CCCCATATGAGTGCCAGATCAA 59.893 50.000 3.65 0.00 0.00 2.57
4780 5422 6.658816 AGTGCCAGATCAATACAACACAATAA 59.341 34.615 0.00 0.00 0.00 1.40
4830 5472 3.574284 TTGAAACATACACATGGCAGC 57.426 42.857 0.00 0.00 36.39 5.25
4832 5474 3.156293 TGAAACATACACATGGCAGCTT 58.844 40.909 0.00 0.00 36.39 3.74
4833 5475 4.331108 TGAAACATACACATGGCAGCTTA 58.669 39.130 0.00 0.00 36.39 3.09
4844 5486 1.185315 GGCAGCTTAAAAGGGATGCA 58.815 50.000 5.24 0.00 45.18 3.96
4849 5491 1.478105 GCTTAAAAGGGATGCAGGGTG 59.522 52.381 0.00 0.00 0.00 4.61
4850 5492 1.478105 CTTAAAAGGGATGCAGGGTGC 59.522 52.381 0.00 0.00 45.29 5.01
4859 5501 3.368571 GCAGGGTGCAGTTGGCTC 61.369 66.667 0.00 0.00 44.26 4.70
4860 5502 2.113774 CAGGGTGCAGTTGGCTCA 59.886 61.111 0.00 0.00 45.15 4.26
4861 5503 2.113986 AGGGTGCAGTTGGCTCAC 59.886 61.111 0.00 0.00 45.15 3.51
4862 5504 2.113986 GGGTGCAGTTGGCTCACT 59.886 61.111 0.00 0.00 45.15 3.41
4864 5506 1.227943 GGTGCAGTTGGCTCACTGA 60.228 57.895 18.16 4.31 46.29 3.41
4865 5507 1.510480 GGTGCAGTTGGCTCACTGAC 61.510 60.000 18.16 13.14 46.29 3.51
4867 5509 0.533531 TGCAGTTGGCTCACTGACAG 60.534 55.000 18.16 0.00 46.29 3.51
4868 5510 1.233285 GCAGTTGGCTCACTGACAGG 61.233 60.000 18.16 0.00 46.29 4.00
4869 5511 0.107456 CAGTTGGCTCACTGACAGGT 59.893 55.000 7.51 0.00 46.29 4.00
4871 5513 0.886490 GTTGGCTCACTGACAGGTGG 60.886 60.000 7.51 0.00 37.75 4.61
4872 5514 2.055689 TTGGCTCACTGACAGGTGGG 62.056 60.000 7.51 4.15 40.39 4.61
4874 5516 2.348998 CTCACTGACAGGTGGGCC 59.651 66.667 7.51 0.00 37.75 5.80
4875 5517 2.447572 TCACTGACAGGTGGGCCA 60.448 61.111 0.00 0.00 37.75 5.36
4876 5518 2.055689 CTCACTGACAGGTGGGCCAA 62.056 60.000 8.40 0.00 37.75 4.52
4879 5521 1.075482 CTGACAGGTGGGCCAACAT 59.925 57.895 26.12 11.79 37.19 2.71
4880 5522 1.228521 TGACAGGTGGGCCAACATG 60.229 57.895 26.12 23.32 37.83 3.21
4881 5523 2.601367 ACAGGTGGGCCAACATGC 60.601 61.111 24.76 2.93 35.29 4.06
4882 5524 2.283388 CAGGTGGGCCAACATGCT 60.283 61.111 26.12 0.00 37.19 3.79
4883 5525 1.909781 CAGGTGGGCCAACATGCTT 60.910 57.895 26.12 0.00 37.19 3.91
4884 5526 1.152269 AGGTGGGCCAACATGCTTT 60.152 52.632 26.12 0.00 37.19 3.51
4885 5527 0.763986 AGGTGGGCCAACATGCTTTT 60.764 50.000 26.12 0.00 37.19 2.27
4886 5528 0.603439 GGTGGGCCAACATGCTTTTG 60.603 55.000 18.85 0.00 34.09 2.44
4887 5529 0.603439 GTGGGCCAACATGCTTTTGG 60.603 55.000 8.40 8.81 45.60 3.28
4888 5530 1.003476 GGGCCAACATGCTTTTGGG 60.003 57.895 4.39 0.00 43.39 4.12
4897 5619 0.837260 ATGCTTTTGGGCCCACATGT 60.837 50.000 28.70 5.78 0.00 3.21
4931 5653 2.260481 GCTTCCTGCAGTACGTTAGAC 58.740 52.381 13.81 0.00 42.31 2.59
4932 5654 2.352421 GCTTCCTGCAGTACGTTAGACA 60.352 50.000 13.81 0.00 42.31 3.41
4937 5659 1.341852 TGCAGTACGTTAGACAAGCCA 59.658 47.619 0.00 0.00 0.00 4.75
4938 5660 1.725164 GCAGTACGTTAGACAAGCCAC 59.275 52.381 0.00 0.00 0.00 5.01
4939 5661 2.334838 CAGTACGTTAGACAAGCCACC 58.665 52.381 0.00 0.00 0.00 4.61
4942 5664 0.038526 ACGTTAGACAAGCCACCTCG 60.039 55.000 0.00 0.00 0.00 4.63
4943 5665 0.038526 CGTTAGACAAGCCACCTCGT 60.039 55.000 0.00 0.00 0.00 4.18
4944 5666 1.711206 GTTAGACAAGCCACCTCGTC 58.289 55.000 0.00 0.00 0.00 4.20
4945 5667 1.272769 GTTAGACAAGCCACCTCGTCT 59.727 52.381 0.00 0.00 41.45 4.18
4957 5679 3.588955 CACCTCGTCTGATGTTTGATGA 58.411 45.455 0.00 0.00 0.00 2.92
4988 5710 0.694771 TCCTCAAGCTGCAGTGGAAT 59.305 50.000 16.64 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.905736 CACCACCATTTCCCTCCATTTT 59.094 45.455 0.00 0.00 0.00 1.82
1 2 2.539302 CACCACCATTTCCCTCCATTT 58.461 47.619 0.00 0.00 0.00 2.32
2 3 1.273211 CCACCACCATTTCCCTCCATT 60.273 52.381 0.00 0.00 0.00 3.16
3 4 0.336048 CCACCACCATTTCCCTCCAT 59.664 55.000 0.00 0.00 0.00 3.41
4 5 1.773635 CCACCACCATTTCCCTCCA 59.226 57.895 0.00 0.00 0.00 3.86
5 6 1.682344 GCCACCACCATTTCCCTCC 60.682 63.158 0.00 0.00 0.00 4.30
6 7 0.967380 CAGCCACCACCATTTCCCTC 60.967 60.000 0.00 0.00 0.00 4.30
7 8 1.077265 CAGCCACCACCATTTCCCT 59.923 57.895 0.00 0.00 0.00 4.20
8 9 1.228862 ACAGCCACCACCATTTCCC 60.229 57.895 0.00 0.00 0.00 3.97
9 10 0.539438 TGACAGCCACCACCATTTCC 60.539 55.000 0.00 0.00 0.00 3.13
10 11 0.598065 GTGACAGCCACCACCATTTC 59.402 55.000 0.00 0.00 39.86 2.17
11 12 2.732289 GTGACAGCCACCACCATTT 58.268 52.632 0.00 0.00 39.86 2.32
12 13 4.500265 GTGACAGCCACCACCATT 57.500 55.556 0.00 0.00 39.86 3.16
19 20 1.805945 GTCGATCGGTGACAGCCAC 60.806 63.158 16.41 0.00 44.95 5.01
20 21 2.571757 GTCGATCGGTGACAGCCA 59.428 61.111 16.41 0.00 36.37 4.75
21 22 2.579787 CGTCGATCGGTGACAGCC 60.580 66.667 16.41 0.00 36.11 4.85
37 38 2.651841 TATTCCTCTCCCCGGGTCCG 62.652 65.000 21.85 3.89 39.44 4.79
38 39 0.832559 CTATTCCTCTCCCCGGGTCC 60.833 65.000 21.85 0.00 0.00 4.46
39 40 0.832559 CCTATTCCTCTCCCCGGGTC 60.833 65.000 21.85 0.00 0.00 4.46
40 41 1.236282 CCTATTCCTCTCCCCGGGT 59.764 63.158 21.85 0.00 0.00 5.28
41 42 2.217745 GCCTATTCCTCTCCCCGGG 61.218 68.421 15.80 15.80 0.00 5.73
42 43 2.574955 CGCCTATTCCTCTCCCCGG 61.575 68.421 0.00 0.00 0.00 5.73
43 44 3.052081 CGCCTATTCCTCTCCCCG 58.948 66.667 0.00 0.00 0.00 5.73
44 45 2.744377 GCGCCTATTCCTCTCCCC 59.256 66.667 0.00 0.00 0.00 4.81
45 46 2.340443 CGCGCCTATTCCTCTCCC 59.660 66.667 0.00 0.00 0.00 4.30
46 47 1.300233 CACGCGCCTATTCCTCTCC 60.300 63.158 5.73 0.00 0.00 3.71
47 48 1.951631 GCACGCGCCTATTCCTCTC 60.952 63.158 5.73 0.00 0.00 3.20
48 49 2.107141 GCACGCGCCTATTCCTCT 59.893 61.111 5.73 0.00 0.00 3.69
62 63 2.509336 CACGAGATGGACGGGCAC 60.509 66.667 0.00 0.00 34.93 5.01
63 64 2.994995 ACACGAGATGGACGGGCA 60.995 61.111 0.00 0.00 37.71 5.36
64 65 2.202756 GACACGAGATGGACGGGC 60.203 66.667 0.00 0.00 37.71 6.13
65 66 1.139734 CAGACACGAGATGGACGGG 59.860 63.158 0.00 0.00 40.19 5.28
66 67 1.517257 GCAGACACGAGATGGACGG 60.517 63.158 0.00 0.00 34.93 4.79
67 68 1.869574 CGCAGACACGAGATGGACG 60.870 63.158 0.00 0.00 34.06 4.79
68 69 2.161486 GCGCAGACACGAGATGGAC 61.161 63.158 0.30 0.00 34.06 4.02
69 70 2.181777 GCGCAGACACGAGATGGA 59.818 61.111 0.30 0.00 34.06 3.41
70 71 2.887568 GGCGCAGACACGAGATGG 60.888 66.667 10.83 0.00 31.66 3.51
71 72 2.943680 ATCGGCGCAGACACGAGATG 62.944 60.000 13.72 0.00 40.21 2.90
72 73 2.775856 ATCGGCGCAGACACGAGAT 61.776 57.895 13.72 0.00 40.21 2.75
73 74 3.440415 ATCGGCGCAGACACGAGA 61.440 61.111 13.72 0.00 40.21 4.04
74 75 3.250323 CATCGGCGCAGACACGAG 61.250 66.667 13.72 0.64 40.21 4.18
77 78 2.257286 ATTTGCATCGGCGCAGACAC 62.257 55.000 13.72 8.57 44.14 3.67
78 79 1.980951 GATTTGCATCGGCGCAGACA 61.981 55.000 13.72 4.36 44.14 3.41
79 80 1.297893 GATTTGCATCGGCGCAGAC 60.298 57.895 13.72 1.25 44.14 3.51
80 81 2.472059 GGATTTGCATCGGCGCAGA 61.472 57.895 13.82 13.82 44.14 4.26
81 82 2.025156 GGATTTGCATCGGCGCAG 59.975 61.111 10.83 5.07 44.14 5.18
82 83 3.875039 CGGATTTGCATCGGCGCA 61.875 61.111 10.83 0.00 45.35 6.09
83 84 4.612536 CCGGATTTGCATCGGCGC 62.613 66.667 0.00 0.00 45.35 6.53
86 87 1.021202 TTAAGCCGGATTTGCATCGG 58.979 50.000 11.69 12.08 45.84 4.18
87 88 2.842208 TTTAAGCCGGATTTGCATCG 57.158 45.000 11.69 0.00 0.00 3.84
88 89 4.270808 CCAATTTTAAGCCGGATTTGCATC 59.729 41.667 11.69 0.00 0.00 3.91
89 90 4.081198 TCCAATTTTAAGCCGGATTTGCAT 60.081 37.500 11.69 0.00 0.00 3.96
90 91 3.259374 TCCAATTTTAAGCCGGATTTGCA 59.741 39.130 11.69 0.00 0.00 4.08
91 92 3.616821 GTCCAATTTTAAGCCGGATTTGC 59.383 43.478 11.69 0.00 0.00 3.68
92 93 4.864247 CAGTCCAATTTTAAGCCGGATTTG 59.136 41.667 11.69 1.40 0.00 2.32
93 94 4.081697 CCAGTCCAATTTTAAGCCGGATTT 60.082 41.667 11.69 3.16 0.00 2.17
94 95 3.447229 CCAGTCCAATTTTAAGCCGGATT 59.553 43.478 11.03 11.03 0.00 3.01
95 96 3.023832 CCAGTCCAATTTTAAGCCGGAT 58.976 45.455 5.05 0.00 0.00 4.18
96 97 2.442413 CCAGTCCAATTTTAAGCCGGA 58.558 47.619 5.05 0.00 0.00 5.14
97 98 1.476488 CCCAGTCCAATTTTAAGCCGG 59.524 52.381 0.00 0.00 0.00 6.13
98 99 2.442413 TCCCAGTCCAATTTTAAGCCG 58.558 47.619 0.00 0.00 0.00 5.52
99 100 4.383010 CCATTCCCAGTCCAATTTTAAGCC 60.383 45.833 0.00 0.00 0.00 4.35
100 101 4.466015 TCCATTCCCAGTCCAATTTTAAGC 59.534 41.667 0.00 0.00 0.00 3.09
101 102 6.460123 CGATCCATTCCCAGTCCAATTTTAAG 60.460 42.308 0.00 0.00 0.00 1.85
102 103 5.359576 CGATCCATTCCCAGTCCAATTTTAA 59.640 40.000 0.00 0.00 0.00 1.52
103 104 4.887071 CGATCCATTCCCAGTCCAATTTTA 59.113 41.667 0.00 0.00 0.00 1.52
104 105 3.701040 CGATCCATTCCCAGTCCAATTTT 59.299 43.478 0.00 0.00 0.00 1.82
105 106 3.290710 CGATCCATTCCCAGTCCAATTT 58.709 45.455 0.00 0.00 0.00 1.82
106 107 2.936202 CGATCCATTCCCAGTCCAATT 58.064 47.619 0.00 0.00 0.00 2.32
107 108 1.477558 GCGATCCATTCCCAGTCCAAT 60.478 52.381 0.00 0.00 0.00 3.16
108 109 0.107214 GCGATCCATTCCCAGTCCAA 60.107 55.000 0.00 0.00 0.00 3.53
109 110 1.526887 GCGATCCATTCCCAGTCCA 59.473 57.895 0.00 0.00 0.00 4.02
110 111 1.227973 GGCGATCCATTCCCAGTCC 60.228 63.158 0.00 0.00 0.00 3.85
111 112 1.227973 GGGCGATCCATTCCCAGTC 60.228 63.158 0.00 0.00 39.82 3.51
112 113 2.919043 GGGCGATCCATTCCCAGT 59.081 61.111 0.00 0.00 39.82 4.00
113 114 2.281070 CGGGCGATCCATTCCCAG 60.281 66.667 7.50 0.00 40.05 4.45
114 115 4.562425 GCGGGCGATCCATTCCCA 62.562 66.667 7.50 0.00 40.05 4.37
117 118 4.602259 TCCGCGGGCGATCCATTC 62.602 66.667 27.83 0.00 42.83 2.67
118 119 4.910585 GTCCGCGGGCGATCCATT 62.911 66.667 27.83 0.00 42.83 3.16
153 154 2.700773 GCAACTCCAATGGGGCGAC 61.701 63.158 0.00 0.00 36.21 5.19
154 155 2.361104 GCAACTCCAATGGGGCGA 60.361 61.111 0.00 0.00 36.21 5.54
155 156 2.361610 AGCAACTCCAATGGGGCG 60.362 61.111 0.00 0.00 36.21 6.13
156 157 0.255890 TAGAGCAACTCCAATGGGGC 59.744 55.000 0.00 0.00 36.21 5.80
157 158 2.648059 CTTAGAGCAACTCCAATGGGG 58.352 52.381 0.00 0.00 38.37 4.96
158 159 2.648059 CCTTAGAGCAACTCCAATGGG 58.352 52.381 0.00 0.00 0.00 4.00
159 160 2.648059 CCCTTAGAGCAACTCCAATGG 58.352 52.381 0.00 0.00 0.00 3.16
160 161 2.025887 ACCCCTTAGAGCAACTCCAATG 60.026 50.000 0.00 0.00 0.00 2.82
161 162 2.239907 GACCCCTTAGAGCAACTCCAAT 59.760 50.000 0.00 0.00 0.00 3.16
162 163 1.628846 GACCCCTTAGAGCAACTCCAA 59.371 52.381 0.00 0.00 0.00 3.53
163 164 1.203313 AGACCCCTTAGAGCAACTCCA 60.203 52.381 0.00 0.00 0.00 3.86
164 165 1.483004 GAGACCCCTTAGAGCAACTCC 59.517 57.143 0.00 0.00 0.00 3.85
165 166 1.483004 GGAGACCCCTTAGAGCAACTC 59.517 57.143 0.00 0.00 0.00 3.01
166 167 1.574263 GGAGACCCCTTAGAGCAACT 58.426 55.000 0.00 0.00 0.00 3.16
180 181 4.396522 ACGATACACTATGGTAGGGAGAC 58.603 47.826 0.00 0.00 32.21 3.36
181 182 4.719026 ACGATACACTATGGTAGGGAGA 57.281 45.455 0.00 0.00 32.21 3.71
182 183 4.083431 CGAACGATACACTATGGTAGGGAG 60.083 50.000 0.00 0.00 32.21 4.30
183 184 3.817084 CGAACGATACACTATGGTAGGGA 59.183 47.826 0.00 0.00 32.21 4.20
184 185 3.817084 TCGAACGATACACTATGGTAGGG 59.183 47.826 0.00 0.00 34.64 3.53
185 186 4.320057 GGTCGAACGATACACTATGGTAGG 60.320 50.000 0.00 0.00 0.00 3.18
186 187 4.274214 TGGTCGAACGATACACTATGGTAG 59.726 45.833 0.00 0.00 0.00 3.18
187 188 4.198530 TGGTCGAACGATACACTATGGTA 58.801 43.478 0.00 0.00 0.00 3.25
188 189 3.018856 TGGTCGAACGATACACTATGGT 58.981 45.455 0.00 0.00 0.00 3.55
189 190 3.703286 TGGTCGAACGATACACTATGG 57.297 47.619 0.00 0.00 0.00 2.74
190 191 4.607955 ACATGGTCGAACGATACACTATG 58.392 43.478 0.00 4.72 34.75 2.23
191 192 4.913335 ACATGGTCGAACGATACACTAT 57.087 40.909 0.00 0.00 0.00 2.12
192 193 5.816449 TTACATGGTCGAACGATACACTA 57.184 39.130 0.00 0.00 0.00 2.74
193 194 4.707030 TTACATGGTCGAACGATACACT 57.293 40.909 0.00 0.00 0.00 3.55
194 195 5.961395 AATTACATGGTCGAACGATACAC 57.039 39.130 0.00 0.00 0.00 2.90
195 196 5.292345 CCAAATTACATGGTCGAACGATACA 59.708 40.000 0.00 3.88 33.08 2.29
196 197 5.734311 CCAAATTACATGGTCGAACGATAC 58.266 41.667 0.00 0.00 33.08 2.24
197 198 5.977171 CCAAATTACATGGTCGAACGATA 57.023 39.130 0.00 0.00 33.08 2.92
198 199 4.875544 CCAAATTACATGGTCGAACGAT 57.124 40.909 0.00 0.00 33.08 3.73
207 208 6.616774 AAAGCAACAAACCAAATTACATGG 57.383 33.333 0.00 0.00 43.84 3.66
228 229 6.035217 GGTTTTCGCCCGCTTTATAAATAAA 58.965 36.000 0.00 0.00 0.00 1.40
229 230 5.357596 AGGTTTTCGCCCGCTTTATAAATAA 59.642 36.000 0.00 0.00 0.00 1.40
230 231 4.883006 AGGTTTTCGCCCGCTTTATAAATA 59.117 37.500 0.00 0.00 0.00 1.40
231 232 3.697542 AGGTTTTCGCCCGCTTTATAAAT 59.302 39.130 0.00 0.00 0.00 1.40
232 233 3.083293 AGGTTTTCGCCCGCTTTATAAA 58.917 40.909 0.00 0.00 0.00 1.40
233 234 2.713877 AGGTTTTCGCCCGCTTTATAA 58.286 42.857 0.00 0.00 0.00 0.98
234 235 2.406596 AGGTTTTCGCCCGCTTTATA 57.593 45.000 0.00 0.00 0.00 0.98
235 236 2.406596 TAGGTTTTCGCCCGCTTTAT 57.593 45.000 0.00 0.00 0.00 1.40
236 237 2.406596 ATAGGTTTTCGCCCGCTTTA 57.593 45.000 0.00 0.00 0.00 1.85
237 238 1.541379 AATAGGTTTTCGCCCGCTTT 58.459 45.000 0.00 0.00 0.00 3.51
238 239 1.541379 AAATAGGTTTTCGCCCGCTT 58.459 45.000 0.00 0.00 0.00 4.68
239 240 1.541379 AAAATAGGTTTTCGCCCGCT 58.459 45.000 0.00 0.00 32.14 5.52
240 241 3.127376 TCTTAAAATAGGTTTTCGCCCGC 59.873 43.478 0.00 0.00 38.44 6.13
241 242 4.950434 TCTTAAAATAGGTTTTCGCCCG 57.050 40.909 0.00 0.00 38.44 6.13
242 243 9.811995 ATTTTATCTTAAAATAGGTTTTCGCCC 57.188 29.630 3.95 0.00 38.44 6.13
256 257 9.474313 ACAACTGGCCTCATATTTTATCTTAAA 57.526 29.630 3.32 0.00 0.00 1.52
257 258 9.474313 AACAACTGGCCTCATATTTTATCTTAA 57.526 29.630 3.32 0.00 0.00 1.85
258 259 8.902806 CAACAACTGGCCTCATATTTTATCTTA 58.097 33.333 3.32 0.00 0.00 2.10
259 260 7.631377 GCAACAACTGGCCTCATATTTTATCTT 60.631 37.037 3.32 0.00 0.00 2.40
260 261 6.183360 GCAACAACTGGCCTCATATTTTATCT 60.183 38.462 3.32 0.00 0.00 1.98
261 262 5.979517 GCAACAACTGGCCTCATATTTTATC 59.020 40.000 3.32 0.00 0.00 1.75
280 281 1.340017 GCCTAGAATGGTCCAGCAACA 60.340 52.381 0.00 0.00 0.00 3.33
305 306 2.762887 TGCTTTGTTTTGGACACATGGA 59.237 40.909 0.00 0.00 38.18 3.41
312 313 4.437255 CCTTTGCTTTGCTTTGTTTTGGAC 60.437 41.667 0.00 0.00 0.00 4.02
313 314 3.688673 CCTTTGCTTTGCTTTGTTTTGGA 59.311 39.130 0.00 0.00 0.00 3.53
314 315 3.181498 CCCTTTGCTTTGCTTTGTTTTGG 60.181 43.478 0.00 0.00 0.00 3.28
315 316 3.181498 CCCCTTTGCTTTGCTTTGTTTTG 60.181 43.478 0.00 0.00 0.00 2.44
316 317 3.016031 CCCCTTTGCTTTGCTTTGTTTT 58.984 40.909 0.00 0.00 0.00 2.43
317 318 2.642427 CCCCTTTGCTTTGCTTTGTTT 58.358 42.857 0.00 0.00 0.00 2.83
318 319 1.746861 GCCCCTTTGCTTTGCTTTGTT 60.747 47.619 0.00 0.00 0.00 2.83
319 320 0.179048 GCCCCTTTGCTTTGCTTTGT 60.179 50.000 0.00 0.00 0.00 2.83
321 322 1.069596 CGCCCCTTTGCTTTGCTTT 59.930 52.632 0.00 0.00 0.00 3.51
368 381 3.003897 TGCGTCTTACAAAAGCGGAAATT 59.996 39.130 0.00 0.00 34.74 1.82
369 382 2.550606 TGCGTCTTACAAAAGCGGAAAT 59.449 40.909 0.00 0.00 34.74 2.17
576 592 0.693049 TGGGGAGGAGCAGAAGAAAC 59.307 55.000 0.00 0.00 0.00 2.78
580 596 1.140652 GATCTTGGGGAGGAGCAGAAG 59.859 57.143 0.00 0.00 0.00 2.85
581 597 1.207791 GATCTTGGGGAGGAGCAGAA 58.792 55.000 0.00 0.00 0.00 3.02
644 663 4.877378 TGTTCCTCTAGCCGTTCTAAAA 57.123 40.909 0.00 0.00 0.00 1.52
655 674 1.134530 CGACGCGCTTGTTCCTCTAG 61.135 60.000 5.73 0.00 0.00 2.43
674 693 4.116878 GCCACAGCCGAGATTCTC 57.883 61.111 3.43 3.43 0.00 2.87
798 1056 3.883744 GACGTGTGGGCCCAGACAG 62.884 68.421 41.61 34.96 39.78 3.51
847 1105 1.460689 AGACCAGGGGAAACGACCA 60.461 57.895 0.00 0.00 0.00 4.02
967 1225 4.778415 CGAGACACGGCGAGGTGG 62.778 72.222 16.62 0.00 42.23 4.61
968 1226 3.733960 TCGAGACACGGCGAGGTG 61.734 66.667 16.62 3.66 43.54 4.00
972 1230 3.429141 GGACTCGAGACACGGCGA 61.429 66.667 21.68 0.00 42.82 5.54
973 1231 4.477975 GGGACTCGAGACACGGCG 62.478 72.222 21.68 4.80 42.82 6.46
974 1232 4.477975 CGGGACTCGAGACACGGC 62.478 72.222 27.95 6.05 42.43 5.68
975 1233 4.477975 GCGGGACTCGAGACACGG 62.478 72.222 33.75 19.34 42.43 4.94
976 1234 4.477975 GGCGGGACTCGAGACACG 62.478 72.222 30.48 30.48 42.43 4.49
977 1235 4.477975 CGGCGGGACTCGAGACAC 62.478 72.222 21.68 14.02 42.43 3.67
984 1242 4.821589 CTCAAGGCGGCGGGACTC 62.822 72.222 9.78 0.00 26.16 3.36
1002 1260 1.877443 GACAATAAATATGGGCGCGGT 59.123 47.619 8.83 0.00 0.00 5.68
1006 1264 2.805671 TCAGCGACAATAAATATGGGCG 59.194 45.455 0.00 0.00 0.00 6.13
1017 1275 7.667043 TGAAAAACTACTTATCAGCGACAAT 57.333 32.000 0.00 0.00 0.00 2.71
1036 1294 9.825972 GAGTCGAACATATCAGAAAAATGAAAA 57.174 29.630 0.00 0.00 31.76 2.29
1037 1295 9.219603 AGAGTCGAACATATCAGAAAAATGAAA 57.780 29.630 0.00 0.00 31.76 2.69
1038 1296 8.777865 AGAGTCGAACATATCAGAAAAATGAA 57.222 30.769 0.00 0.00 31.76 2.57
1039 1297 8.777865 AAGAGTCGAACATATCAGAAAAATGA 57.222 30.769 0.00 0.00 0.00 2.57
1040 1298 9.831737 AAAAGAGTCGAACATATCAGAAAAATG 57.168 29.630 0.00 0.00 0.00 2.32
1042 1300 9.273016 AGAAAAGAGTCGAACATATCAGAAAAA 57.727 29.630 0.00 0.00 0.00 1.94
1047 1305 8.472683 AAGAAGAAAAGAGTCGAACATATCAG 57.527 34.615 0.00 0.00 0.00 2.90
1051 1309 8.141909 TCTCAAAGAAGAAAAGAGTCGAACATA 58.858 33.333 0.00 0.00 0.00 2.29
1088 1346 5.551760 ATGTACTTTCAGAAATTCGCCAG 57.448 39.130 0.00 0.00 0.00 4.85
1090 1348 5.123979 AGGAATGTACTTTCAGAAATTCGCC 59.876 40.000 19.69 3.07 0.00 5.54
1111 1369 6.213195 ACATAAAAGGGAAATGCAAATGAGGA 59.787 34.615 0.00 0.00 0.00 3.71
1115 1373 5.291614 CGGACATAAAAGGGAAATGCAAATG 59.708 40.000 0.00 0.00 0.00 2.32
1139 1397 8.036273 TCGTACTTCAATCTTTAATTTGTCCC 57.964 34.615 0.00 0.00 0.00 4.46
1174 1433 1.372683 CAGTCAGTCAGTGTGGGGG 59.627 63.158 0.00 0.00 0.00 5.40
1258 1517 9.113838 ACTGCTACCACTTGAAAATAGATATTG 57.886 33.333 0.00 0.00 0.00 1.90
1292 1555 4.339814 AGCAAGAATCCTTCTCCGTAGTAG 59.660 45.833 0.00 0.00 39.61 2.57
1299 1562 7.396540 TGAAAAATAGCAAGAATCCTTCTCC 57.603 36.000 0.00 0.00 39.61 3.71
1317 1580 6.962678 GCTTTTAGTACGACACACTTGAAAAA 59.037 34.615 0.00 0.00 0.00 1.94
1533 1797 1.734465 CCTGAGAAACGAGTTGATGCC 59.266 52.381 0.00 0.00 0.00 4.40
1634 1898 3.195825 AGAAGAAAGATAGTCCGGTGGTG 59.804 47.826 0.00 0.00 0.00 4.17
1829 2093 2.035066 AGCAGCAAACACAAAGACATCC 59.965 45.455 0.00 0.00 0.00 3.51
1911 2175 0.182537 TGTTGTCCAGTGGAACCCTG 59.817 55.000 15.09 0.00 37.80 4.45
2150 2414 3.004106 GCAATATGATGCCACTCCTTGTC 59.996 47.826 0.00 0.00 40.49 3.18
2522 2786 4.525912 ATTCACCAAGCTTTTGATCACC 57.474 40.909 8.09 0.00 0.00 4.02
2642 2906 4.096984 GCATGGAAGTCAGTAATTCCCTTG 59.903 45.833 2.50 2.35 43.68 3.61
2661 2925 4.036498 GGGATCTCTGTTGATTTCAGCATG 59.964 45.833 0.00 0.00 36.51 4.06
2792 3056 6.162777 CGAAGGAGGATGAAGAGGATATTTC 58.837 44.000 0.00 0.00 0.00 2.17
3016 3280 1.378882 TTCCATGCTTGGCTCGATGC 61.379 55.000 13.75 0.00 43.29 3.91
3065 3329 0.866427 CCGCATAGATGAGCAGCTTG 59.134 55.000 0.00 0.00 0.00 4.01
3275 3539 1.134280 CAGGGCTTGTGTAGGATCTGG 60.134 57.143 0.00 0.00 0.00 3.86
3283 3547 0.035317 CACTCTGCAGGGCTTGTGTA 59.965 55.000 15.27 0.00 0.00 2.90
3324 3588 9.579932 AAACAGAAGAGGAGTAAAATCAAATCT 57.420 29.630 0.00 0.00 0.00 2.40
3364 3628 1.856597 AGTACTGTTTTGCGTCGTGAC 59.143 47.619 0.00 0.00 0.00 3.67
3400 3664 0.031857 CCTCTAGATGTCAGCTGCGG 59.968 60.000 9.47 0.00 0.00 5.69
3443 3707 6.647334 TCAGTTTTGAAGTGATGCCATTAA 57.353 33.333 0.00 0.00 35.98 1.40
3501 3765 5.864418 AAGGAATGTAGTAATACAGCGGA 57.136 39.130 9.15 0.00 32.97 5.54
3502 3766 5.815740 ACAAAGGAATGTAGTAATACAGCGG 59.184 40.000 9.15 0.00 32.97 5.52
3512 3776 4.760204 GCTACCACAACAAAGGAATGTAGT 59.240 41.667 0.00 0.00 32.02 2.73
3513 3777 4.759693 TGCTACCACAACAAAGGAATGTAG 59.240 41.667 0.00 0.00 32.02 2.74
3614 3943 2.845659 TCCTGTTCTACCCACATGGAT 58.154 47.619 0.00 0.00 37.39 3.41
3625 3954 3.239449 TGGCTTCTCAGTTCCTGTTCTA 58.761 45.455 0.00 0.00 32.61 2.10
3653 3982 1.477295 GACTTACCTCGCAGTAGCCTT 59.523 52.381 0.00 0.00 37.52 4.35
3654 3983 1.104630 GACTTACCTCGCAGTAGCCT 58.895 55.000 0.00 0.00 37.52 4.58
3784 4113 4.223477 AGCCGTGTTAATTAGTTAGGGTGA 59.777 41.667 3.96 0.00 0.00 4.02
3830 4160 1.871039 TGGAAAGAACAGTAGTTGCGC 59.129 47.619 0.00 0.00 38.30 6.09
3834 4164 5.995897 ACGCTATTTGGAAAGAACAGTAGTT 59.004 36.000 0.00 0.00 41.64 2.24
3837 4167 5.407387 GTGACGCTATTTGGAAAGAACAGTA 59.593 40.000 0.00 0.00 0.00 2.74
3876 4206 9.330063 TCATACTATGGAATTTGTTGATCTCAC 57.670 33.333 0.00 0.00 0.00 3.51
3908 4238 7.669427 TCAAACGGAAACTCTTAGTTACCATA 58.331 34.615 0.00 0.00 37.47 2.74
3937 4267 1.547820 TGTCACCTAGCAGCTTCTGAG 59.452 52.381 0.00 0.00 32.44 3.35
4007 4348 8.517878 TGCTTTTCTTGAGATAGAGAAAAATGG 58.482 33.333 11.11 3.56 45.77 3.16
4030 4371 0.178998 GCCAGGGACATGATGATGCT 60.179 55.000 0.00 0.00 32.14 3.79
4059 4400 8.063153 TGGAGTACTATGGTGGTCTTAGAATTA 58.937 37.037 0.00 0.00 0.00 1.40
4060 4401 6.901300 TGGAGTACTATGGTGGTCTTAGAATT 59.099 38.462 0.00 0.00 0.00 2.17
4063 4404 5.461516 TGGAGTACTATGGTGGTCTTAGA 57.538 43.478 0.00 0.00 0.00 2.10
4064 4405 6.540438 TTTGGAGTACTATGGTGGTCTTAG 57.460 41.667 0.00 0.00 0.00 2.18
4066 4407 6.388619 AATTTGGAGTACTATGGTGGTCTT 57.611 37.500 0.00 0.00 0.00 3.01
4067 4408 6.442564 TGTAATTTGGAGTACTATGGTGGTCT 59.557 38.462 0.00 0.00 0.00 3.85
4068 4409 6.646267 TGTAATTTGGAGTACTATGGTGGTC 58.354 40.000 0.00 0.00 0.00 4.02
4069 4410 6.442564 TCTGTAATTTGGAGTACTATGGTGGT 59.557 38.462 0.00 0.00 0.00 4.16
4070 4411 6.884832 TCTGTAATTTGGAGTACTATGGTGG 58.115 40.000 0.00 0.00 0.00 4.61
4071 4412 7.822334 TGTTCTGTAATTTGGAGTACTATGGTG 59.178 37.037 0.00 0.00 0.00 4.17
4072 4413 7.913789 TGTTCTGTAATTTGGAGTACTATGGT 58.086 34.615 0.00 0.00 0.00 3.55
4073 4414 8.041323 ACTGTTCTGTAATTTGGAGTACTATGG 58.959 37.037 0.00 0.00 0.00 2.74
4103 4444 4.433615 TCGAAGATCCAGTCATAAGTTGC 58.566 43.478 0.00 0.00 0.00 4.17
4116 4457 2.494073 AGTGACCTGACTTCGAAGATCC 59.506 50.000 31.08 18.41 35.04 3.36
4128 4469 3.205507 AGCTCCTCCTAATAGTGACCTGA 59.794 47.826 0.00 0.00 0.00 3.86
4129 4470 3.571590 AGCTCCTCCTAATAGTGACCTG 58.428 50.000 0.00 0.00 0.00 4.00
4136 4477 9.030452 AGTCATGTTATAAGCTCCTCCTAATAG 57.970 37.037 0.00 0.00 0.00 1.73
4229 4570 1.555075 TGGATAGGTGAACTCTGCCAC 59.445 52.381 0.00 0.00 0.00 5.01
4242 4583 0.958091 CCGTCTCAGCTCTGGATAGG 59.042 60.000 0.00 0.00 0.00 2.57
4243 4584 1.879380 CTCCGTCTCAGCTCTGGATAG 59.121 57.143 0.00 0.00 0.00 2.08
4292 4633 2.303311 ACTCCTCTTCCACCTTAACAGC 59.697 50.000 0.00 0.00 0.00 4.40
4297 4638 5.187186 GTGTATTCACTCCTCTTCCACCTTA 59.813 44.000 0.00 0.00 40.98 2.69
4300 4641 3.260884 TGTGTATTCACTCCTCTTCCACC 59.739 47.826 4.01 0.00 44.14 4.61
4302 4643 4.777366 TCATGTGTATTCACTCCTCTTCCA 59.223 41.667 4.01 0.00 44.14 3.53
4316 4657 7.094075 ACTGATTTGCTTGTCATTCATGTGTAT 60.094 33.333 0.00 0.00 0.00 2.29
4349 4698 1.140312 TTTCTCTGAGGGGTTGTGCT 58.860 50.000 4.59 0.00 0.00 4.40
4356 4705 2.617532 CCTCTGCTTTTTCTCTGAGGGG 60.618 54.545 4.59 0.00 41.74 4.79
4361 4710 4.336433 TGTCAAACCTCTGCTTTTTCTCTG 59.664 41.667 0.00 0.00 0.00 3.35
4366 4715 2.752903 ACGTGTCAAACCTCTGCTTTTT 59.247 40.909 0.00 0.00 0.00 1.94
4368 4717 1.940613 GACGTGTCAAACCTCTGCTTT 59.059 47.619 0.00 0.00 0.00 3.51
4369 4718 1.134521 TGACGTGTCAAACCTCTGCTT 60.135 47.619 0.00 0.00 36.53 3.91
4370 4719 0.464036 TGACGTGTCAAACCTCTGCT 59.536 50.000 0.00 0.00 36.53 4.24
4371 4720 1.461127 GATGACGTGTCAAACCTCTGC 59.539 52.381 6.80 0.00 43.58 4.26
4391 5027 0.535102 CCCCTATGCCTAAGTTGCCG 60.535 60.000 0.00 0.00 0.00 5.69
4421 5057 9.775854 CTTCATGATTATCAGGAGTGAGTAATT 57.224 33.333 9.49 0.00 38.49 1.40
4422 5058 8.373981 CCTTCATGATTATCAGGAGTGAGTAAT 58.626 37.037 9.49 0.00 38.49 1.89
4423 5059 7.565029 TCCTTCATGATTATCAGGAGTGAGTAA 59.435 37.037 9.49 0.00 38.49 2.24
4424 5060 7.014711 GTCCTTCATGATTATCAGGAGTGAGTA 59.985 40.741 12.46 0.00 38.49 2.59
4425 5061 5.901853 TCCTTCATGATTATCAGGAGTGAGT 59.098 40.000 9.49 0.00 38.49 3.41
4426 5062 6.041865 AGTCCTTCATGATTATCAGGAGTGAG 59.958 42.308 16.64 5.11 38.49 3.51
4427 5063 5.901853 AGTCCTTCATGATTATCAGGAGTGA 59.098 40.000 16.64 7.74 38.49 3.41
4428 5064 6.172136 AGTCCTTCATGATTATCAGGAGTG 57.828 41.667 16.64 7.18 38.49 3.51
4429 5065 6.409005 CCAAGTCCTTCATGATTATCAGGAGT 60.409 42.308 12.46 12.75 38.49 3.85
4430 5066 5.996513 CCAAGTCCTTCATGATTATCAGGAG 59.003 44.000 12.46 4.90 38.49 3.69
4431 5067 5.667172 TCCAAGTCCTTCATGATTATCAGGA 59.333 40.000 5.40 5.40 35.18 3.86
4432 5068 5.762218 GTCCAAGTCCTTCATGATTATCAGG 59.238 44.000 0.00 0.00 0.00 3.86
4433 5069 6.351711 TGTCCAAGTCCTTCATGATTATCAG 58.648 40.000 0.00 0.00 0.00 2.90
4434 5070 6.312141 TGTCCAAGTCCTTCATGATTATCA 57.688 37.500 0.00 0.00 0.00 2.15
4435 5071 6.769822 ACATGTCCAAGTCCTTCATGATTATC 59.230 38.462 11.82 0.00 39.07 1.75
4436 5072 6.666678 ACATGTCCAAGTCCTTCATGATTAT 58.333 36.000 11.82 0.00 39.07 1.28
4437 5073 6.065976 ACATGTCCAAGTCCTTCATGATTA 57.934 37.500 11.82 0.00 39.07 1.75
4438 5074 4.927049 ACATGTCCAAGTCCTTCATGATT 58.073 39.130 11.82 0.00 39.07 2.57
4439 5075 4.581309 ACATGTCCAAGTCCTTCATGAT 57.419 40.909 11.82 0.00 39.07 2.45
4440 5076 4.371624 AACATGTCCAAGTCCTTCATGA 57.628 40.909 0.00 0.00 39.07 3.07
4441 5077 6.600822 AGATTAACATGTCCAAGTCCTTCATG 59.399 38.462 0.00 0.00 40.80 3.07
4447 5083 5.734720 TCAGAGATTAACATGTCCAAGTCC 58.265 41.667 0.00 0.00 0.00 3.85
4485 5121 6.128526 TGCATACATGACAACAAAAATGCATG 60.129 34.615 0.00 0.00 40.12 4.06
4489 5125 5.401972 ACGTGCATACATGACAACAAAAATG 59.598 36.000 0.00 0.00 36.58 2.32
4494 5130 4.693095 ACATACGTGCATACATGACAACAA 59.307 37.500 0.00 0.00 36.58 2.83
4511 5147 5.007039 AGCTTCAGATGCAAACATACATACG 59.993 40.000 10.74 0.00 36.35 3.06
4541 5177 4.813027 ACAACTGCATTTGATTCCATGAC 58.187 39.130 22.12 0.00 0.00 3.06
4564 5200 7.948278 ACTACTATAGTACTAACGTAACCCG 57.052 40.000 8.59 2.96 38.96 5.28
4583 5219 5.063060 GCAACGGAAATCAACGAATACTACT 59.937 40.000 0.00 0.00 0.00 2.57
4597 5233 0.527565 GATGGTGCTGCAACGGAAAT 59.472 50.000 13.71 0.00 0.00 2.17
4678 5320 4.575236 TGGCAAGTCGTACATGTTTAAACA 59.425 37.500 22.58 22.58 44.06 2.83
4679 5321 5.098218 TGGCAAGTCGTACATGTTTAAAC 57.902 39.130 11.54 11.54 0.00 2.01
4723 5365 9.263446 GGGGTATATATAGGAGTACAATGTGAA 57.737 37.037 0.00 0.00 0.00 3.18
4746 5388 1.701292 TGATCTGGCACTCATATGGGG 59.299 52.381 7.68 1.45 0.00 4.96
4804 5446 7.592533 GCTGCCATGTGTATGTTTCAAATATAG 59.407 37.037 0.00 0.00 32.21 1.31
4807 5449 5.418524 AGCTGCCATGTGTATGTTTCAAATA 59.581 36.000 0.00 0.00 32.21 1.40
4814 5456 5.336690 CCTTTTAAGCTGCCATGTGTATGTT 60.337 40.000 0.00 0.00 32.21 2.71
4820 5462 2.170166 TCCCTTTTAAGCTGCCATGTG 58.830 47.619 0.00 0.00 0.00 3.21
4830 5472 1.478105 GCACCCTGCATCCCTTTTAAG 59.522 52.381 0.00 0.00 44.26 1.85
4832 5474 3.281332 GCACCCTGCATCCCTTTTA 57.719 52.632 0.00 0.00 44.26 1.52
4833 5475 4.118584 GCACCCTGCATCCCTTTT 57.881 55.556 0.00 0.00 44.26 2.27
4844 5486 2.113986 GTGAGCCAACTGCACCCT 59.886 61.111 0.00 0.00 44.83 4.34
4849 5491 1.233285 CCTGTCAGTGAGCCAACTGC 61.233 60.000 10.76 7.41 45.93 4.40
4851 5493 0.107456 CACCTGTCAGTGAGCCAACT 59.893 55.000 0.00 0.00 40.34 3.16
4852 5494 0.886490 CCACCTGTCAGTGAGCCAAC 60.886 60.000 0.00 0.00 40.34 3.77
4854 5496 2.519622 CCCACCTGTCAGTGAGCCA 61.520 63.158 0.00 0.00 40.34 4.75
4855 5497 2.348998 CCCACCTGTCAGTGAGCC 59.651 66.667 0.00 0.00 40.34 4.70
4856 5498 2.359230 GCCCACCTGTCAGTGAGC 60.359 66.667 0.00 0.00 40.34 4.26
4857 5499 2.055689 TTGGCCCACCTGTCAGTGAG 62.056 60.000 0.00 0.00 40.34 3.51
4858 5500 2.075566 TTGGCCCACCTGTCAGTGA 61.076 57.895 0.00 0.00 40.34 3.41
4859 5501 1.898574 GTTGGCCCACCTGTCAGTG 60.899 63.158 0.00 0.00 36.63 3.66
4860 5502 1.719063 ATGTTGGCCCACCTGTCAGT 61.719 55.000 4.19 0.00 36.63 3.41
4861 5503 1.075482 ATGTTGGCCCACCTGTCAG 59.925 57.895 4.19 0.00 36.63 3.51
4862 5504 1.228521 CATGTTGGCCCACCTGTCA 60.229 57.895 4.19 0.00 36.63 3.58
4864 5506 2.601367 GCATGTTGGCCCACCTGT 60.601 61.111 12.78 0.00 36.63 4.00
4865 5507 1.474332 AAAGCATGTTGGCCCACCTG 61.474 55.000 4.19 6.19 36.63 4.00
4867 5509 0.603439 CAAAAGCATGTTGGCCCACC 60.603 55.000 4.19 0.00 26.62 4.61
4868 5510 2.917172 CAAAAGCATGTTGGCCCAC 58.083 52.632 0.00 0.00 26.62 4.61
4874 5516 0.603439 GTGGGCCCAAAAGCATGTTG 60.603 55.000 30.64 0.00 31.44 3.33
4875 5517 1.053264 TGTGGGCCCAAAAGCATGTT 61.053 50.000 30.64 0.00 0.00 2.71
4876 5518 0.837260 ATGTGGGCCCAAAAGCATGT 60.837 50.000 30.64 0.38 0.00 3.21
4879 5521 1.459158 ACATGTGGGCCCAAAAGCA 60.459 52.632 30.64 21.57 0.00 3.91
4880 5522 1.293179 GACATGTGGGCCCAAAAGC 59.707 57.895 30.64 15.54 0.00 3.51
4881 5523 0.604578 CTGACATGTGGGCCCAAAAG 59.395 55.000 30.64 22.66 0.00 2.27
4882 5524 0.105760 ACTGACATGTGGGCCCAAAA 60.106 50.000 30.64 19.55 0.00 2.44
4883 5525 0.827089 CACTGACATGTGGGCCCAAA 60.827 55.000 30.64 25.24 34.56 3.28
4884 5526 1.228521 CACTGACATGTGGGCCCAA 60.229 57.895 30.64 17.87 34.56 4.12
4885 5527 2.128290 CTCACTGACATGTGGGCCCA 62.128 60.000 24.45 24.45 38.40 5.36
4886 5528 1.377725 CTCACTGACATGTGGGCCC 60.378 63.158 17.59 17.59 38.40 5.80
4887 5529 4.308526 CTCACTGACATGTGGGCC 57.691 61.111 1.15 0.00 38.40 5.80
4927 5649 0.888619 CAGACGAGGTGGCTTGTCTA 59.111 55.000 0.00 0.00 44.00 2.59
4931 5653 0.036952 ACATCAGACGAGGTGGCTTG 60.037 55.000 0.00 0.00 34.18 4.01
4932 5654 0.687354 AACATCAGACGAGGTGGCTT 59.313 50.000 0.00 0.00 36.02 4.35
4937 5659 3.589988 GTCATCAAACATCAGACGAGGT 58.410 45.455 0.00 0.00 37.90 3.85
4938 5660 2.932614 GGTCATCAAACATCAGACGAGG 59.067 50.000 0.00 0.00 0.00 4.63
4939 5661 3.588955 TGGTCATCAAACATCAGACGAG 58.411 45.455 0.00 0.00 0.00 4.18
4942 5664 4.391216 CACTCTGGTCATCAAACATCAGAC 59.609 45.833 0.00 0.00 0.00 3.51
4943 5665 4.284234 TCACTCTGGTCATCAAACATCAGA 59.716 41.667 0.00 0.00 0.00 3.27
4944 5666 4.572909 TCACTCTGGTCATCAAACATCAG 58.427 43.478 0.00 0.00 0.00 2.90
4945 5667 4.572909 CTCACTCTGGTCATCAAACATCA 58.427 43.478 0.00 0.00 0.00 3.07
4957 5679 1.265236 CTTGAGGAGCTCACTCTGGT 58.735 55.000 23.96 0.28 40.46 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.