Multiple sequence alignment - TraesCS3A01G477000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G477000 chr3A 100.000 3861 0 0 1 3861 708934613 708930753 0.000000e+00 7131
1 TraesCS3A01G477000 chr3A 82.707 266 44 2 2314 2577 709109600 709109865 6.450000e-58 235
2 TraesCS3A01G477000 chr3D 88.681 2297 179 33 1625 3861 573872035 573869760 0.000000e+00 2726
3 TraesCS3A01G477000 chr3D 92.691 862 39 6 435 1294 573873053 573872214 0.000000e+00 1221
4 TraesCS3A01G477000 chr3D 85.523 746 90 13 2215 2944 573966886 573967629 0.000000e+00 763
5 TraesCS3A01G477000 chr3D 94.000 50 2 1 502 550 397541283 397541332 1.490000e-09 75
6 TraesCS3A01G477000 chr3B 90.313 1342 79 23 1576 2899 763261857 763263165 0.000000e+00 1711
7 TraesCS3A01G477000 chr3B 93.586 764 42 5 3017 3778 763263420 763264178 0.000000e+00 1133
8 TraesCS3A01G477000 chr3B 86.193 1014 107 21 1939 2926 763220804 763219798 0.000000e+00 1066
9 TraesCS3A01G477000 chr3B 88.288 666 59 16 1 651 763259095 763259756 0.000000e+00 780
10 TraesCS3A01G477000 chr3B 91.858 565 37 7 835 1398 763260239 763260795 0.000000e+00 780
11 TraesCS3A01G477000 chr3B 93.617 94 6 0 2939 3032 763263283 763263376 1.450000e-29 141
12 TraesCS3A01G477000 chr3B 94.000 50 2 1 502 550 188488596 188488547 1.490000e-09 75
13 TraesCS3A01G477000 chr1D 84.838 554 76 6 2308 2859 423644296 423644843 5.640000e-153 551
14 TraesCS3A01G477000 chr1D 88.646 229 26 0 1026 1254 423882015 423882243 2.940000e-71 279
15 TraesCS3A01G477000 chr1D 87.336 229 29 0 1026 1254 423643734 423643962 2.960000e-66 263
16 TraesCS3A01G477000 chr1D 82.209 163 24 5 438 598 111392743 111392902 6.730000e-28 135
17 TraesCS3A01G477000 chr1A 84.353 556 86 1 2308 2862 520351195 520350640 9.430000e-151 544
18 TraesCS3A01G477000 chr1A 84.116 554 85 3 2308 2859 519819561 519820113 2.040000e-147 532
19 TraesCS3A01G477000 chr1A 83.662 557 85 5 2300 2853 520401751 520402304 1.590000e-143 520
20 TraesCS3A01G477000 chr1A 86.957 230 30 0 1026 1255 520401071 520401300 3.830000e-65 259
21 TraesCS3A01G477000 chr1A 87.895 190 23 0 1065 1254 520355220 520355031 1.400000e-54 224
22 TraesCS3A01G477000 chr1A 80.292 274 43 10 383 651 496083750 496083483 3.040000e-46 196
23 TraesCS3A01G477000 chr5A 78.947 285 46 11 377 651 376997231 376996951 8.520000e-42 182
24 TraesCS3A01G477000 chr5B 78.008 241 44 9 363 598 527037139 527037375 4.020000e-30 143
25 TraesCS3A01G477000 chr5D 78.788 198 34 7 438 629 434380098 434380293 4.050000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G477000 chr3A 708930753 708934613 3860 True 7131.0 7131 100.0000 1 3861 1 chr3A.!!$R1 3860
1 TraesCS3A01G477000 chr3D 573869760 573873053 3293 True 1973.5 2726 90.6860 435 3861 2 chr3D.!!$R1 3426
2 TraesCS3A01G477000 chr3D 573966886 573967629 743 False 763.0 763 85.5230 2215 2944 1 chr3D.!!$F2 729
3 TraesCS3A01G477000 chr3B 763219798 763220804 1006 True 1066.0 1066 86.1930 1939 2926 1 chr3B.!!$R2 987
4 TraesCS3A01G477000 chr3B 763259095 763264178 5083 False 909.0 1711 91.5324 1 3778 5 chr3B.!!$F1 3777
5 TraesCS3A01G477000 chr1D 423643734 423644843 1109 False 407.0 551 86.0870 1026 2859 2 chr1D.!!$F3 1833
6 TraesCS3A01G477000 chr1A 519819561 519820113 552 False 532.0 532 84.1160 2308 2859 1 chr1A.!!$F1 551
7 TraesCS3A01G477000 chr1A 520401071 520402304 1233 False 389.5 520 85.3095 1026 2853 2 chr1A.!!$F2 1827
8 TraesCS3A01G477000 chr1A 520350640 520355220 4580 True 384.0 544 86.1240 1065 2862 2 chr1A.!!$R2 1797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 1092 0.238289 AAAAGCCGCGATGACTTGTG 59.762 50.0 8.23 0.00 0.0 3.33 F
1424 1883 0.040646 TCCGGAGTGTAGACCATGGT 59.959 55.0 19.89 19.89 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2242 6292 1.132834 CGGAGCAATGCAGCATGTAAA 59.867 47.619 9.18 0.0 39.31 2.01 R
3215 7439 1.226030 AAGTAAACGGCGTGACCTGC 61.226 55.000 15.70 2.3 35.61 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 7.670364 TCCATTTTTCTTCTTCTTCATTTCCC 58.330 34.615 0.00 0.00 0.00 3.97
52 54 9.101325 TCTTCTTCTTCATTTCCCTTACTTCTA 57.899 33.333 0.00 0.00 0.00 2.10
53 55 9.898152 CTTCTTCTTCATTTCCCTTACTTCTAT 57.102 33.333 0.00 0.00 0.00 1.98
263 272 9.621629 TTCACCATAAGTTTACTTTTTCTCTCA 57.378 29.630 0.00 0.00 37.40 3.27
264 273 9.793259 TCACCATAAGTTTACTTTTTCTCTCAT 57.207 29.630 0.00 0.00 37.40 2.90
301 310 8.861033 TTCACTGAATTCAAAAAGTTCATCTG 57.139 30.769 9.88 0.00 32.05 2.90
408 418 6.362016 TCATCGAAATCAAAATTTGTTCACCG 59.638 34.615 5.56 5.13 35.21 4.94
450 460 8.148807 TCGTCAGATTCAAAAACTGTTAATCA 57.851 30.769 13.36 0.00 33.93 2.57
487 497 6.294843 GGTTCATCCGATTTCCAAAAAGGTTA 60.295 38.462 0.00 0.00 39.02 2.85
561 573 9.376075 TCAAATTTGTTCATCTGCTTAAAAACA 57.624 25.926 17.47 0.00 0.00 2.83
679 1092 0.238289 AAAAGCCGCGATGACTTGTG 59.762 50.000 8.23 0.00 0.00 3.33
701 1114 1.202604 TCGGGTTGAGTTGGAGTGAAC 60.203 52.381 0.00 0.00 0.00 3.18
711 1124 4.330250 AGTTGGAGTGAACCTGAATCATG 58.670 43.478 0.00 0.00 0.00 3.07
751 1164 1.128200 CATACCCCTCCAACCATCGA 58.872 55.000 0.00 0.00 0.00 3.59
761 1174 2.159156 TCCAACCATCGAACGTCCATAG 60.159 50.000 0.00 0.00 0.00 2.23
786 1199 1.073025 ACCGACAGCATTCCAGCAA 59.927 52.632 0.00 0.00 36.85 3.91
802 1215 6.452494 TCCAGCAATCTACTTCAGTACTAC 57.548 41.667 0.00 0.00 0.00 2.73
837 1264 3.697045 CACTAGCTAGGTAGTTGAGCACT 59.303 47.826 27.83 5.39 38.73 4.40
838 1265 3.697045 ACTAGCTAGGTAGTTGAGCACTG 59.303 47.826 25.40 2.85 38.73 3.66
839 1266 2.530701 AGCTAGGTAGTTGAGCACTGT 58.469 47.619 0.00 0.00 38.73 3.55
840 1267 2.232452 AGCTAGGTAGTTGAGCACTGTG 59.768 50.000 2.76 2.76 38.73 3.66
841 1268 2.675317 GCTAGGTAGTTGAGCACTGTGG 60.675 54.545 10.21 0.00 35.97 4.17
842 1269 1.717032 AGGTAGTTGAGCACTGTGGA 58.283 50.000 10.21 0.00 35.97 4.02
843 1270 2.047061 AGGTAGTTGAGCACTGTGGAA 58.953 47.619 10.21 0.00 35.97 3.53
844 1271 2.438021 AGGTAGTTGAGCACTGTGGAAA 59.562 45.455 10.21 0.00 35.97 3.13
845 1272 2.548480 GGTAGTTGAGCACTGTGGAAAC 59.452 50.000 10.21 0.00 35.97 2.78
846 1273 1.680338 AGTTGAGCACTGTGGAAACC 58.320 50.000 10.21 0.00 32.83 3.27
847 1274 1.064758 AGTTGAGCACTGTGGAAACCA 60.065 47.619 10.21 0.00 32.83 3.67
860 1287 4.057063 TGGAAACCACTAGCTAGGTAGT 57.943 45.455 25.40 25.40 37.07 2.73
861 1288 4.422984 TGGAAACCACTAGCTAGGTAGTT 58.577 43.478 27.83 19.33 37.07 2.24
862 1289 4.222145 TGGAAACCACTAGCTAGGTAGTTG 59.778 45.833 27.83 25.86 37.07 3.16
863 1290 4.465305 GGAAACCACTAGCTAGGTAGTTGA 59.535 45.833 29.69 1.12 37.07 3.18
864 1291 5.394333 GGAAACCACTAGCTAGGTAGTTGAG 60.394 48.000 29.69 22.82 37.07 3.02
865 1292 3.025262 ACCACTAGCTAGGTAGTTGAGC 58.975 50.000 29.69 0.27 36.07 4.26
866 1293 3.024547 CCACTAGCTAGGTAGTTGAGCA 58.975 50.000 27.83 0.00 38.73 4.26
867 1294 3.181485 CCACTAGCTAGGTAGTTGAGCAC 60.181 52.174 27.83 0.00 38.73 4.40
943 1370 1.210967 ACGGAACAACAGAAACCTGGA 59.789 47.619 0.00 0.00 36.01 3.86
994 1421 1.828660 CGGAGGGGAGAGTACGCAT 60.829 63.158 0.00 0.00 0.00 4.73
1017 1444 1.080501 CATGGAGCGTATCGGCGAT 60.081 57.895 26.95 26.95 38.18 4.58
1125 1552 1.882189 ATGAGGTCAGGGACGGGGTA 61.882 60.000 0.00 0.00 32.65 3.69
1182 1609 0.755327 TAGACATGGCGAGGCTGCTA 60.755 55.000 0.00 0.00 34.52 3.49
1183 1610 1.153369 GACATGGCGAGGCTGCTAA 60.153 57.895 0.00 0.00 34.52 3.09
1290 1749 6.930731 TCGCATTTGCATATATCTACCACTA 58.069 36.000 3.13 0.00 42.21 2.74
1294 1753 9.778993 GCATTTGCATATATCTACCACTATTTG 57.221 33.333 0.00 0.00 41.59 2.32
1306 1765 1.496429 CACTATTTGGAGGGAGGGCAT 59.504 52.381 0.00 0.00 0.00 4.40
1331 1790 2.930040 ACTCGTGCCTTTGATATTCGTG 59.070 45.455 0.00 0.00 0.00 4.35
1337 1796 5.173312 CGTGCCTTTGATATTCGTGTACTAG 59.827 44.000 0.00 0.00 0.00 2.57
1339 1798 6.534079 GTGCCTTTGATATTCGTGTACTAGTT 59.466 38.462 0.00 0.00 0.00 2.24
1342 1801 7.491696 GCCTTTGATATTCGTGTACTAGTTCTT 59.508 37.037 0.00 0.00 0.00 2.52
1347 1806 9.961265 TGATATTCGTGTACTAGTTCTTAATGG 57.039 33.333 0.00 0.00 0.00 3.16
1348 1807 9.962783 GATATTCGTGTACTAGTTCTTAATGGT 57.037 33.333 0.00 0.00 0.00 3.55
1349 1808 9.745880 ATATTCGTGTACTAGTTCTTAATGGTG 57.254 33.333 0.00 0.00 0.00 4.17
1374 1833 2.815478 CGAGATCTTGCTGGTTAGGAC 58.185 52.381 0.00 0.00 0.00 3.85
1406 1865 9.660180 AATTTCTGTAATTTCTAGAGAGTGGTC 57.340 33.333 0.00 0.00 32.48 4.02
1407 1866 6.777213 TCTGTAATTTCTAGAGAGTGGTCC 57.223 41.667 0.00 0.00 0.00 4.46
1409 1868 4.401519 TGTAATTTCTAGAGAGTGGTCCGG 59.598 45.833 0.00 0.00 0.00 5.14
1410 1869 2.893215 TTTCTAGAGAGTGGTCCGGA 57.107 50.000 0.00 0.00 0.00 5.14
1412 1871 1.287217 TCTAGAGAGTGGTCCGGAGT 58.713 55.000 3.06 0.00 0.00 3.85
1413 1872 1.065345 TCTAGAGAGTGGTCCGGAGTG 60.065 57.143 3.06 0.00 0.00 3.51
1414 1873 0.697079 TAGAGAGTGGTCCGGAGTGT 59.303 55.000 3.06 0.00 0.00 3.55
1418 1877 0.810016 GAGTGGTCCGGAGTGTAGAC 59.190 60.000 3.06 0.00 0.00 2.59
1423 1882 0.460311 GTCCGGAGTGTAGACCATGG 59.540 60.000 11.19 11.19 0.00 3.66
1424 1883 0.040646 TCCGGAGTGTAGACCATGGT 59.959 55.000 19.89 19.89 0.00 3.55
1425 1884 0.902531 CCGGAGTGTAGACCATGGTT 59.097 55.000 20.85 11.56 0.00 3.67
1426 1885 1.134788 CCGGAGTGTAGACCATGGTTC 60.135 57.143 20.85 11.23 0.00 3.62
1427 1886 1.825474 CGGAGTGTAGACCATGGTTCT 59.175 52.381 20.85 18.70 0.00 3.01
1428 1887 3.021695 CGGAGTGTAGACCATGGTTCTA 58.978 50.000 20.85 17.70 0.00 2.10
1429 1888 3.066900 CGGAGTGTAGACCATGGTTCTAG 59.933 52.174 20.85 6.28 0.00 2.43
1430 1889 4.279145 GGAGTGTAGACCATGGTTCTAGA 58.721 47.826 20.85 16.23 0.00 2.43
1431 1890 4.098196 GGAGTGTAGACCATGGTTCTAGAC 59.902 50.000 26.65 26.65 32.51 2.59
1432 1891 4.673968 AGTGTAGACCATGGTTCTAGACA 58.326 43.478 30.72 22.75 34.11 3.41
1433 1892 5.084519 AGTGTAGACCATGGTTCTAGACAA 58.915 41.667 30.72 15.70 34.11 3.18
1434 1893 5.047235 AGTGTAGACCATGGTTCTAGACAAC 60.047 44.000 30.72 21.58 34.11 3.32
1435 1894 4.836175 TGTAGACCATGGTTCTAGACAACA 59.164 41.667 20.85 13.99 0.00 3.33
1436 1895 5.483937 TGTAGACCATGGTTCTAGACAACAT 59.516 40.000 20.85 0.00 0.00 2.71
1437 1896 5.505181 AGACCATGGTTCTAGACAACATT 57.495 39.130 20.85 0.00 0.00 2.71
1438 1897 5.880901 AGACCATGGTTCTAGACAACATTT 58.119 37.500 20.85 0.00 0.00 2.32
1439 1898 6.306987 AGACCATGGTTCTAGACAACATTTT 58.693 36.000 20.85 0.00 0.00 1.82
1440 1899 6.777580 AGACCATGGTTCTAGACAACATTTTT 59.222 34.615 20.85 0.00 0.00 1.94
1441 1900 6.748132 ACCATGGTTCTAGACAACATTTTTG 58.252 36.000 13.00 0.00 0.00 2.44
1442 1901 6.158598 CCATGGTTCTAGACAACATTTTTGG 58.841 40.000 2.57 0.00 0.00 3.28
1443 1902 6.015519 CCATGGTTCTAGACAACATTTTTGGA 60.016 38.462 2.57 0.00 0.00 3.53
1444 1903 7.309990 CCATGGTTCTAGACAACATTTTTGGAT 60.310 37.037 2.57 0.00 0.00 3.41
1445 1904 6.980593 TGGTTCTAGACAACATTTTTGGATG 58.019 36.000 0.00 0.00 0.00 3.51
1446 1905 5.863935 GGTTCTAGACAACATTTTTGGATGC 59.136 40.000 0.00 0.00 0.00 3.91
1447 1906 6.446318 GTTCTAGACAACATTTTTGGATGCA 58.554 36.000 0.00 0.00 0.00 3.96
1448 1907 6.839124 TCTAGACAACATTTTTGGATGCAT 57.161 33.333 0.00 0.00 0.00 3.96
1449 1908 6.623486 TCTAGACAACATTTTTGGATGCATG 58.377 36.000 2.46 0.00 0.00 4.06
1450 1909 5.217978 AGACAACATTTTTGGATGCATGT 57.782 34.783 2.46 0.00 34.82 3.21
1477 1936 2.052782 AACTTTCGCTTGAGTTGGGT 57.947 45.000 0.00 0.00 34.96 4.51
1494 1953 2.978278 TGGGTTGAAATCCAGCCAAAAT 59.022 40.909 3.19 0.00 46.72 1.82
1505 1964 5.222079 TCCAGCCAAAATTTTAGGAAACC 57.778 39.130 18.07 5.60 0.00 3.27
1549 2008 7.870509 TTTTATTCTGATCCAAGTCATGAGG 57.129 36.000 0.00 0.00 0.00 3.86
1550 2009 6.566079 TTATTCTGATCCAAGTCATGAGGT 57.434 37.500 0.00 0.00 0.00 3.85
1551 2010 3.900966 TCTGATCCAAGTCATGAGGTG 57.099 47.619 0.00 0.00 0.00 4.00
1552 2011 2.502947 TCTGATCCAAGTCATGAGGTGG 59.497 50.000 15.70 15.70 0.00 4.61
1553 2012 2.238144 CTGATCCAAGTCATGAGGTGGT 59.762 50.000 19.44 10.36 32.68 4.16
1554 2013 2.026915 TGATCCAAGTCATGAGGTGGTG 60.027 50.000 19.44 4.78 32.68 4.17
1555 2014 1.728323 TCCAAGTCATGAGGTGGTGA 58.272 50.000 19.44 3.93 32.68 4.02
1556 2015 2.054021 TCCAAGTCATGAGGTGGTGAA 58.946 47.619 19.44 3.34 32.68 3.18
1557 2016 2.644299 TCCAAGTCATGAGGTGGTGAAT 59.356 45.455 19.44 0.00 32.68 2.57
1558 2017 3.843619 TCCAAGTCATGAGGTGGTGAATA 59.156 43.478 19.44 2.74 32.68 1.75
1559 2018 4.474651 TCCAAGTCATGAGGTGGTGAATAT 59.525 41.667 19.44 0.00 32.68 1.28
1560 2019 5.044919 TCCAAGTCATGAGGTGGTGAATATT 60.045 40.000 19.44 0.00 32.68 1.28
1561 2020 5.653769 CCAAGTCATGAGGTGGTGAATATTT 59.346 40.000 14.16 0.00 0.00 1.40
1562 2021 6.183360 CCAAGTCATGAGGTGGTGAATATTTC 60.183 42.308 14.16 0.00 0.00 2.17
1563 2022 6.319048 AGTCATGAGGTGGTGAATATTTCT 57.681 37.500 0.00 0.00 0.00 2.52
1564 2023 6.725364 AGTCATGAGGTGGTGAATATTTCTT 58.275 36.000 0.00 0.00 0.00 2.52
1565 2024 7.177878 AGTCATGAGGTGGTGAATATTTCTTT 58.822 34.615 0.00 0.00 0.00 2.52
1566 2025 7.671398 AGTCATGAGGTGGTGAATATTTCTTTT 59.329 33.333 0.00 0.00 0.00 2.27
1567 2026 8.306761 GTCATGAGGTGGTGAATATTTCTTTTT 58.693 33.333 0.00 0.00 0.00 1.94
1625 4056 6.102663 CCTACTGTCTTACTGAAATGACTGG 58.897 44.000 0.00 0.00 34.28 4.00
1632 4063 7.041167 TGTCTTACTGAAATGACTGGAAACATG 60.041 37.037 0.00 0.00 41.51 3.21
1730 4580 4.622695 GCTCCAAGTTCTGTGCTAGAGAAT 60.623 45.833 0.00 0.00 36.61 2.40
1733 4630 6.398918 TCCAAGTTCTGTGCTAGAGAATTAC 58.601 40.000 0.00 0.00 36.61 1.89
1742 4639 5.633601 TGTGCTAGAGAATTACGTTGACAAG 59.366 40.000 0.00 0.00 0.00 3.16
1865 5854 2.289694 ACCATGTGAACTGGCTACACTC 60.290 50.000 0.00 0.00 37.27 3.51
1937 5931 7.877003 TCCTCTGTTTGTCGCAAAATAAAATA 58.123 30.769 6.59 0.00 0.00 1.40
1986 5980 1.260561 CAAACCACGGAGTTGACGAAG 59.739 52.381 0.00 0.00 41.61 3.79
1995 5989 2.731976 GGAGTTGACGAAGCAGTTGTAG 59.268 50.000 0.00 0.00 0.00 2.74
2132 6131 0.593128 CTGAAAAGTTGGACTGGGCG 59.407 55.000 0.00 0.00 0.00 6.13
2158 6157 0.872021 CTAATCCTCGTGACGCAGCC 60.872 60.000 0.00 0.00 0.00 4.85
2268 6318 1.444895 CTGCATTGCTCCGTTTGCC 60.445 57.895 10.49 0.00 34.20 4.52
2275 6325 1.668151 GCTCCGTTTGCCTCGTCTT 60.668 57.895 0.00 0.00 0.00 3.01
2277 6327 1.938016 GCTCCGTTTGCCTCGTCTTAA 60.938 52.381 0.00 0.00 0.00 1.85
2278 6328 2.409975 CTCCGTTTGCCTCGTCTTAAA 58.590 47.619 0.00 0.00 0.00 1.52
2279 6329 3.000727 CTCCGTTTGCCTCGTCTTAAAT 58.999 45.455 0.00 0.00 0.00 1.40
2281 6331 4.567971 TCCGTTTGCCTCGTCTTAAATTA 58.432 39.130 0.00 0.00 0.00 1.40
2282 6332 4.389687 TCCGTTTGCCTCGTCTTAAATTAC 59.610 41.667 0.00 0.00 0.00 1.89
2283 6333 4.152759 CCGTTTGCCTCGTCTTAAATTACA 59.847 41.667 0.00 0.00 0.00 2.41
2285 6335 6.036300 CCGTTTGCCTCGTCTTAAATTACATA 59.964 38.462 0.00 0.00 0.00 2.29
2286 6336 7.413219 CCGTTTGCCTCGTCTTAAATTACATAA 60.413 37.037 0.00 0.00 0.00 1.90
2880 6966 2.885616 ACCAAACCTAGGTCGAGAAGA 58.114 47.619 16.64 0.00 32.90 2.87
2939 7086 5.001232 GTGTATGTATCCGGTGGCAATTAT 58.999 41.667 0.00 0.00 0.00 1.28
2944 7091 5.686753 TGTATCCGGTGGCAATTATAAACT 58.313 37.500 0.00 0.00 0.00 2.66
2963 7131 2.000447 CTCGACGGGACTGATTTTTCC 59.000 52.381 0.00 0.00 0.00 3.13
2972 7140 5.126061 CGGGACTGATTTTTCCAGATCAATT 59.874 40.000 0.00 0.00 35.69 2.32
3037 7261 7.688534 AGGGATAACAATGGGATAATGAGGATA 59.311 37.037 0.00 0.00 0.00 2.59
3097 7321 6.678568 ATAATGCCTAGCTAGATTGTGAGT 57.321 37.500 22.70 1.31 0.00 3.41
3124 7348 8.970691 TTAAATTTTGAGCTGCTAAACTCATC 57.029 30.769 0.15 0.00 42.26 2.92
3219 7443 3.830192 GCATTCAAGCCCGGCAGG 61.830 66.667 13.15 2.80 39.47 4.85
3234 7458 1.226030 GCAGGTCACGCCGTTTACTT 61.226 55.000 0.00 0.00 43.70 2.24
3271 7495 1.101049 ACACGTGGTTTGCCCTTCAG 61.101 55.000 21.57 0.00 0.00 3.02
3344 7568 2.607411 CTATGCCCATCGGGTGCACA 62.607 60.000 20.43 0.00 46.51 4.57
3411 7635 2.435938 GCTTCGGCCGAATCACCA 60.436 61.111 38.60 17.91 33.28 4.17
3453 7677 5.110814 TGAACCGGAATGTCTCCAATAAT 57.889 39.130 9.46 0.00 45.74 1.28
3774 8021 0.324943 CACATTGACCGAGGTCCCTT 59.675 55.000 18.57 1.86 43.97 3.95
3778 8025 3.003763 GACCGAGGTCCCTTGCCT 61.004 66.667 11.07 0.00 39.08 4.75
3779 8026 2.529389 ACCGAGGTCCCTTGCCTT 60.529 61.111 0.00 0.00 36.29 4.35
3780 8027 2.045926 CCGAGGTCCCTTGCCTTG 60.046 66.667 0.00 0.00 36.29 3.61
3782 8029 1.376037 CGAGGTCCCTTGCCTTGAC 60.376 63.158 0.00 0.00 39.36 3.18
3809 8058 0.829990 CTCCTCCAGAAGAAGGCCTC 59.170 60.000 5.23 0.00 0.00 4.70
3812 8061 1.632920 CCTCCAGAAGAAGGCCTCTTT 59.367 52.381 5.23 2.96 44.82 2.52
3813 8062 2.355615 CCTCCAGAAGAAGGCCTCTTTC 60.356 54.545 5.23 13.43 44.82 2.62
3821 8070 4.278975 AGAAGGCCTCTTTCTTGTACTG 57.721 45.455 5.23 0.00 32.52 2.74
3823 8072 1.079503 GGCCTCTTTCTTGTACTGCG 58.920 55.000 0.00 0.00 0.00 5.18
3833 8082 2.159037 TCTTGTACTGCGAGACGTGTAG 59.841 50.000 0.00 0.00 32.81 2.74
3836 8085 2.413112 TGTACTGCGAGACGTGTAGTAC 59.587 50.000 19.21 19.21 39.14 2.73
3839 8088 3.529533 ACTGCGAGACGTGTAGTACTAT 58.470 45.455 5.75 0.00 0.00 2.12
3846 8095 6.292542 GCGAGACGTGTAGTACTATATCAACA 60.293 42.308 5.75 0.00 0.00 3.33
3851 8100 5.862323 CGTGTAGTACTATATCAACATGGGC 59.138 44.000 5.75 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
319 328 6.430925 ACTTGATGGACAAATTCTCAATTCGA 59.569 34.615 0.00 0.00 38.08 3.71
320 329 6.615088 ACTTGATGGACAAATTCTCAATTCG 58.385 36.000 0.00 0.00 38.08 3.34
383 393 6.362016 CGGTGAACAAATTTTGATTTCGATGA 59.638 34.615 15.81 0.00 0.00 2.92
423 433 9.612620 GATTAACAGTTTTTGAATCTGACGAAT 57.387 29.630 0.00 3.19 33.93 3.34
450 460 9.639601 GAAATCGGATGAACCTTTTAGAAAATT 57.360 29.630 0.00 0.00 36.31 1.82
679 1092 0.602905 CACTCCAACTCAACCCGACC 60.603 60.000 0.00 0.00 0.00 4.79
701 1114 9.847224 TGATATATCCATGATTCATGATTCAGG 57.153 33.333 24.93 20.63 43.81 3.86
711 1124 9.539825 GGTATGTCAGTGATATATCCATGATTC 57.460 37.037 12.15 8.24 0.00 2.52
751 1164 1.134907 CGGTGGTTAGCTATGGACGTT 60.135 52.381 0.00 0.00 0.00 3.99
761 1174 0.727398 GAATGCTGTCGGTGGTTAGC 59.273 55.000 0.00 0.00 36.72 3.09
839 1266 4.057063 ACTACCTAGCTAGTGGTTTCCA 57.943 45.455 19.31 0.00 37.74 3.53
840 1267 4.465305 TCAACTACCTAGCTAGTGGTTTCC 59.535 45.833 19.31 0.00 36.87 3.13
841 1268 5.652518 CTCAACTACCTAGCTAGTGGTTTC 58.347 45.833 19.31 0.00 36.87 2.78
842 1269 4.081586 GCTCAACTACCTAGCTAGTGGTTT 60.082 45.833 19.31 4.77 36.87 3.27
843 1270 3.447944 GCTCAACTACCTAGCTAGTGGTT 59.552 47.826 19.31 16.57 39.22 3.67
844 1271 3.025262 GCTCAACTACCTAGCTAGTGGT 58.975 50.000 19.31 14.15 40.12 4.16
845 1272 3.024547 TGCTCAACTACCTAGCTAGTGG 58.975 50.000 19.31 8.69 37.16 4.00
846 1273 3.697045 AGTGCTCAACTACCTAGCTAGTG 59.303 47.826 19.31 12.85 37.36 2.74
847 1274 3.949113 GAGTGCTCAACTACCTAGCTAGT 59.051 47.826 19.31 10.02 40.07 2.57
848 1275 4.204012 AGAGTGCTCAACTACCTAGCTAG 58.796 47.826 14.20 14.20 40.07 3.42
849 1276 4.237976 AGAGTGCTCAACTACCTAGCTA 57.762 45.455 1.82 0.00 40.07 3.32
850 1277 3.094484 AGAGTGCTCAACTACCTAGCT 57.906 47.619 1.82 0.00 40.07 3.32
851 1278 3.949113 AGTAGAGTGCTCAACTACCTAGC 59.051 47.826 14.74 0.00 40.07 3.42
852 1279 5.648526 TGAAGTAGAGTGCTCAACTACCTAG 59.351 44.000 14.74 0.00 40.07 3.02
853 1280 5.567430 TGAAGTAGAGTGCTCAACTACCTA 58.433 41.667 14.74 4.70 40.07 3.08
854 1281 4.408276 TGAAGTAGAGTGCTCAACTACCT 58.592 43.478 14.74 6.71 40.07 3.08
855 1282 4.218852 ACTGAAGTAGAGTGCTCAACTACC 59.781 45.833 14.74 6.23 40.07 3.18
856 1283 5.157781 CACTGAAGTAGAGTGCTCAACTAC 58.842 45.833 12.14 12.14 40.07 2.73
857 1284 4.218635 CCACTGAAGTAGAGTGCTCAACTA 59.781 45.833 1.82 0.00 40.07 2.24
858 1285 3.006323 CCACTGAAGTAGAGTGCTCAACT 59.994 47.826 1.82 0.00 43.85 3.16
859 1286 3.005897 TCCACTGAAGTAGAGTGCTCAAC 59.994 47.826 1.82 0.00 39.69 3.18
860 1287 3.230976 TCCACTGAAGTAGAGTGCTCAA 58.769 45.455 1.82 0.00 39.69 3.02
861 1288 2.876581 TCCACTGAAGTAGAGTGCTCA 58.123 47.619 1.82 0.00 39.69 4.26
862 1289 4.159506 AGAATCCACTGAAGTAGAGTGCTC 59.840 45.833 0.00 0.00 39.69 4.26
863 1290 4.093011 AGAATCCACTGAAGTAGAGTGCT 58.907 43.478 0.00 0.00 39.69 4.40
864 1291 4.081972 TGAGAATCCACTGAAGTAGAGTGC 60.082 45.833 0.00 0.00 39.69 4.40
865 1292 5.651387 TGAGAATCCACTGAAGTAGAGTG 57.349 43.478 0.00 0.00 40.55 3.51
866 1293 6.096705 CAGATGAGAATCCACTGAAGTAGAGT 59.903 42.308 0.00 0.00 38.77 3.24
867 1294 6.461370 CCAGATGAGAATCCACTGAAGTAGAG 60.461 46.154 0.00 0.00 38.77 2.43
925 1352 4.937201 ATTTCCAGGTTTCTGTTGTTCC 57.063 40.909 0.00 0.00 39.31 3.62
943 1370 3.094572 CTCCCCAATGCTCACAGAATTT 58.905 45.455 0.00 0.00 0.00 1.82
994 1421 0.603065 CCGATACGCTCCATGGATCA 59.397 55.000 16.63 0.78 0.00 2.92
1017 1444 0.468226 CGGCCCTGCTGATTACCTTA 59.532 55.000 0.00 0.00 37.02 2.69
1068 1495 0.972983 CGGGGATCACAGTGGAGTCT 60.973 60.000 0.00 0.00 0.00 3.24
1158 1585 0.108138 GCCTCGCCATGTCTACAACT 60.108 55.000 0.00 0.00 0.00 3.16
1182 1609 0.320697 CTTCCGAGAACTCCGGGTTT 59.679 55.000 0.00 0.00 46.47 3.27
1183 1610 1.972978 CTTCCGAGAACTCCGGGTT 59.027 57.895 0.00 4.57 46.47 4.11
1290 1749 1.362237 TGAAATGCCCTCCCTCCAAAT 59.638 47.619 0.00 0.00 0.00 2.32
1294 1753 0.106967 GAGTGAAATGCCCTCCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
1298 1757 1.648467 GCACGAGTGAAATGCCCTCC 61.648 60.000 7.50 0.00 33.06 4.30
1303 1762 1.266718 TCAAAGGCACGAGTGAAATGC 59.733 47.619 7.50 0.00 38.68 3.56
1306 1765 4.092821 CGAATATCAAAGGCACGAGTGAAA 59.907 41.667 7.50 0.00 0.00 2.69
1331 1790 5.515626 CGCACTCACCATTAAGAACTAGTAC 59.484 44.000 0.00 0.00 0.00 2.73
1337 1796 3.585862 TCTCGCACTCACCATTAAGAAC 58.414 45.455 0.00 0.00 0.00 3.01
1339 1798 3.701542 AGATCTCGCACTCACCATTAAGA 59.298 43.478 0.00 0.00 0.00 2.10
1342 1801 3.785486 CAAGATCTCGCACTCACCATTA 58.215 45.455 0.00 0.00 0.00 1.90
1343 1802 2.625737 CAAGATCTCGCACTCACCATT 58.374 47.619 0.00 0.00 0.00 3.16
1344 1803 1.741732 GCAAGATCTCGCACTCACCAT 60.742 52.381 0.00 0.00 0.00 3.55
1346 1805 0.108424 AGCAAGATCTCGCACTCACC 60.108 55.000 8.66 0.00 0.00 4.02
1347 1806 0.997932 CAGCAAGATCTCGCACTCAC 59.002 55.000 8.66 0.00 0.00 3.51
1348 1807 0.108472 CCAGCAAGATCTCGCACTCA 60.108 55.000 8.66 0.00 0.00 3.41
1349 1808 0.108424 ACCAGCAAGATCTCGCACTC 60.108 55.000 8.66 0.00 0.00 3.51
1401 1860 1.888736 GGTCTACACTCCGGACCAC 59.111 63.158 0.00 0.00 46.14 4.16
1402 1861 4.428845 GGTCTACACTCCGGACCA 57.571 61.111 0.00 0.00 46.14 4.02
1403 1862 0.460311 CATGGTCTACACTCCGGACC 59.540 60.000 0.00 0.00 46.80 4.46
1404 1863 0.460311 CCATGGTCTACACTCCGGAC 59.540 60.000 0.00 0.00 0.00 4.79
1405 1864 0.040646 ACCATGGTCTACACTCCGGA 59.959 55.000 13.00 2.93 0.00 5.14
1406 1865 0.902531 AACCATGGTCTACACTCCGG 59.097 55.000 20.07 0.00 0.00 5.14
1407 1866 1.825474 AGAACCATGGTCTACACTCCG 59.175 52.381 20.07 0.00 0.00 4.63
1409 1868 4.705507 TGTCTAGAACCATGGTCTACACTC 59.294 45.833 20.07 11.02 0.00 3.51
1410 1869 4.673968 TGTCTAGAACCATGGTCTACACT 58.326 43.478 20.07 14.35 0.00 3.55
1412 1871 4.836175 TGTTGTCTAGAACCATGGTCTACA 59.164 41.667 20.07 14.25 0.00 2.74
1413 1872 5.401531 TGTTGTCTAGAACCATGGTCTAC 57.598 43.478 20.07 12.82 0.00 2.59
1414 1873 6.620877 AATGTTGTCTAGAACCATGGTCTA 57.379 37.500 20.07 18.52 0.00 2.59
1418 1877 6.015519 TCCAAAAATGTTGTCTAGAACCATGG 60.016 38.462 11.19 11.19 0.00 3.66
1419 1878 6.980593 TCCAAAAATGTTGTCTAGAACCATG 58.019 36.000 0.00 0.00 0.00 3.66
1420 1879 7.605449 CATCCAAAAATGTTGTCTAGAACCAT 58.395 34.615 0.00 0.00 0.00 3.55
1421 1880 6.516527 GCATCCAAAAATGTTGTCTAGAACCA 60.517 38.462 0.00 0.00 0.00 3.67
1422 1881 5.863935 GCATCCAAAAATGTTGTCTAGAACC 59.136 40.000 0.00 0.00 0.00 3.62
1423 1882 6.446318 TGCATCCAAAAATGTTGTCTAGAAC 58.554 36.000 0.00 0.00 0.00 3.01
1424 1883 6.647334 TGCATCCAAAAATGTTGTCTAGAA 57.353 33.333 0.00 0.00 0.00 2.10
1425 1884 6.209192 ACATGCATCCAAAAATGTTGTCTAGA 59.791 34.615 0.00 0.00 28.99 2.43
1426 1885 6.392354 ACATGCATCCAAAAATGTTGTCTAG 58.608 36.000 0.00 0.00 28.99 2.43
1427 1886 6.343716 ACATGCATCCAAAAATGTTGTCTA 57.656 33.333 0.00 0.00 28.99 2.59
1428 1887 5.217978 ACATGCATCCAAAAATGTTGTCT 57.782 34.783 0.00 0.00 28.99 3.41
1429 1888 5.927954 AACATGCATCCAAAAATGTTGTC 57.072 34.783 0.00 0.00 40.71 3.18
1432 1891 4.716794 ACCAACATGCATCCAAAAATGTT 58.283 34.783 0.00 0.00 42.45 2.71
1433 1892 4.354893 ACCAACATGCATCCAAAAATGT 57.645 36.364 0.00 0.00 34.79 2.71
1434 1893 5.236282 TGTACCAACATGCATCCAAAAATG 58.764 37.500 0.00 0.00 0.00 2.32
1435 1894 5.480642 TGTACCAACATGCATCCAAAAAT 57.519 34.783 0.00 0.00 0.00 1.82
1436 1895 4.944619 TGTACCAACATGCATCCAAAAA 57.055 36.364 0.00 0.00 0.00 1.94
1437 1896 4.944619 TTGTACCAACATGCATCCAAAA 57.055 36.364 0.00 0.00 34.97 2.44
1438 1897 4.343526 AGTTTGTACCAACATGCATCCAAA 59.656 37.500 11.97 0.00 34.97 3.28
1439 1898 3.894427 AGTTTGTACCAACATGCATCCAA 59.106 39.130 11.97 0.00 34.97 3.53
1440 1899 3.495331 AGTTTGTACCAACATGCATCCA 58.505 40.909 11.97 0.00 34.97 3.41
1441 1900 4.519540 AAGTTTGTACCAACATGCATCC 57.480 40.909 11.97 0.00 34.97 3.51
1442 1901 4.616802 CGAAAGTTTGTACCAACATGCATC 59.383 41.667 11.97 2.65 34.97 3.91
1443 1902 4.545610 CGAAAGTTTGTACCAACATGCAT 58.454 39.130 11.97 0.00 34.97 3.96
1444 1903 3.793801 GCGAAAGTTTGTACCAACATGCA 60.794 43.478 11.97 0.00 34.97 3.96
1445 1904 2.724174 GCGAAAGTTTGTACCAACATGC 59.276 45.455 11.97 6.30 34.97 4.06
1446 1905 4.223320 AGCGAAAGTTTGTACCAACATG 57.777 40.909 11.97 0.00 34.97 3.21
1447 1906 4.606961 CAAGCGAAAGTTTGTACCAACAT 58.393 39.130 11.97 0.00 45.66 2.71
1448 1907 4.022464 CAAGCGAAAGTTTGTACCAACA 57.978 40.909 11.97 0.00 45.66 3.33
1477 1936 7.072263 TCCTAAAATTTTGGCTGGATTTCAA 57.928 32.000 13.76 0.00 0.00 2.69
1494 1953 8.754080 TGAAAACTTTCATCAGGTTTCCTAAAA 58.246 29.630 8.40 0.00 46.16 1.52
1530 1989 3.054875 CCACCTCATGACTTGGATCAGAA 60.055 47.826 11.15 0.00 30.46 3.02
1531 1990 2.502947 CCACCTCATGACTTGGATCAGA 59.497 50.000 11.15 0.00 30.46 3.27
1532 1991 2.238144 ACCACCTCATGACTTGGATCAG 59.762 50.000 20.31 4.00 33.02 2.90
1533 1992 2.026915 CACCACCTCATGACTTGGATCA 60.027 50.000 20.31 0.00 33.02 2.92
1534 1993 2.237143 TCACCACCTCATGACTTGGATC 59.763 50.000 20.31 0.00 33.02 3.36
1535 1994 2.269023 TCACCACCTCATGACTTGGAT 58.731 47.619 20.31 6.14 33.02 3.41
1537 1996 2.566833 TTCACCACCTCATGACTTGG 57.433 50.000 14.07 14.07 35.06 3.61
1538 1997 6.600822 AGAAATATTCACCACCTCATGACTTG 59.399 38.462 0.00 0.00 0.00 3.16
1539 1998 6.725364 AGAAATATTCACCACCTCATGACTT 58.275 36.000 0.00 0.00 0.00 3.01
1540 1999 6.319048 AGAAATATTCACCACCTCATGACT 57.681 37.500 0.00 0.00 0.00 3.41
1541 2000 7.396540 AAAGAAATATTCACCACCTCATGAC 57.603 36.000 0.00 0.00 0.00 3.06
1542 2001 8.421249 AAAAAGAAATATTCACCACCTCATGA 57.579 30.769 0.00 0.00 0.00 3.07
1543 2002 8.526147 AGAAAAAGAAATATTCACCACCTCATG 58.474 33.333 0.00 0.00 0.00 3.07
1544 2003 8.655935 AGAAAAAGAAATATTCACCACCTCAT 57.344 30.769 0.00 0.00 0.00 2.90
1545 2004 8.477419 AAGAAAAAGAAATATTCACCACCTCA 57.523 30.769 0.00 0.00 0.00 3.86
1546 2005 9.764363 AAAAGAAAAAGAAATATTCACCACCTC 57.236 29.630 0.00 0.00 0.00 3.85
1819 4803 2.827322 TGGGCATGGTTCTCATTTTCAG 59.173 45.455 0.00 0.00 32.92 3.02
1986 5980 6.734104 ATCTTTCATGTCTTCTACAACTGC 57.266 37.500 0.00 0.00 42.70 4.40
1995 5989 5.006552 GCAGAGTGCTATCTTTCATGTCTTC 59.993 44.000 0.00 0.00 40.96 2.87
2132 6131 2.288458 CGTCACGAGGATTAGACTCTCC 59.712 54.545 0.00 0.00 32.83 3.71
2158 6157 2.290367 TCATTGTTCCTTTGCTCGTGTG 59.710 45.455 0.00 0.00 0.00 3.82
2242 6292 1.132834 CGGAGCAATGCAGCATGTAAA 59.867 47.619 9.18 0.00 39.31 2.01
2281 6331 7.040201 GCATCCCTGAATGATATGTGTTTATGT 60.040 37.037 0.00 0.00 0.00 2.29
2282 6332 7.040271 TGCATCCCTGAATGATATGTGTTTATG 60.040 37.037 0.00 0.00 0.00 1.90
2283 6333 7.005902 TGCATCCCTGAATGATATGTGTTTAT 58.994 34.615 0.00 0.00 0.00 1.40
2285 6335 5.068198 GTGCATCCCTGAATGATATGTGTTT 59.932 40.000 0.00 0.00 0.00 2.83
2286 6336 4.581824 GTGCATCCCTGAATGATATGTGTT 59.418 41.667 0.00 0.00 0.00 3.32
2680 6759 4.035102 GTGGCCCGCCCTTTCTCT 62.035 66.667 0.00 0.00 34.56 3.10
2939 7086 3.947910 AAATCAGTCCCGTCGAGTTTA 57.052 42.857 0.00 0.00 0.00 2.01
2944 7091 1.345089 TGGAAAAATCAGTCCCGTCGA 59.655 47.619 0.00 0.00 32.48 4.20
2991 7159 8.608185 ATCCCTGTAAACATACCAATTTTCAT 57.392 30.769 0.00 0.00 0.00 2.57
3037 7261 2.501723 GGTCGTCATATATGGCTGGGAT 59.498 50.000 15.09 0.00 0.00 3.85
3043 7267 2.353803 GGTCAGGGTCGTCATATATGGC 60.354 54.545 12.78 10.12 0.00 4.40
3097 7321 9.762933 ATGAGTTTAGCAGCTCAAAATTTAAAA 57.237 25.926 0.00 0.00 43.79 1.52
3215 7439 1.226030 AAGTAAACGGCGTGACCTGC 61.226 55.000 15.70 2.30 35.61 4.85
3219 7443 1.458445 GAAGGAAGTAAACGGCGTGAC 59.542 52.381 15.70 15.48 0.00 3.67
3224 7448 2.919859 GACTACGAAGGAAGTAAACGGC 59.080 50.000 0.00 0.00 0.00 5.68
3225 7449 3.120199 TCGACTACGAAGGAAGTAAACGG 60.120 47.826 0.00 0.00 45.74 4.44
3258 7482 3.304458 CGTTAACTTCTGAAGGGCAAACC 60.304 47.826 20.61 2.40 40.67 3.27
3271 7495 4.629092 AGTGAAGGGTCTTCGTTAACTTC 58.371 43.478 3.71 0.00 32.54 3.01
3344 7568 5.975988 ATAGATATATTGGGGGCACGATT 57.024 39.130 0.00 0.00 0.00 3.34
3411 7635 4.843728 TCATAGAAACCGGCTTCAGAAAT 58.156 39.130 19.34 4.93 0.00 2.17
3453 7677 3.703052 GTCCGACCTCCCTATCTTTGTTA 59.297 47.826 0.00 0.00 0.00 2.41
3517 7758 6.484288 TGAATAGGTTGAAGGTGACATGATT 58.516 36.000 0.00 0.00 0.00 2.57
3623 7870 3.303049 GGGAATAAGAACCTAGACGGGA 58.697 50.000 0.00 0.00 36.97 5.14
3759 8006 2.747686 GCAAGGGACCTCGGTCAA 59.252 61.111 17.21 0.00 46.20 3.18
3778 8025 2.224159 GGAGGAGGCCCACTGTCAA 61.224 63.158 0.00 0.00 33.88 3.18
3779 8026 2.607750 GGAGGAGGCCCACTGTCA 60.608 66.667 0.00 0.00 33.88 3.58
3780 8027 2.607750 TGGAGGAGGCCCACTGTC 60.608 66.667 0.00 0.00 33.88 3.51
3782 8029 1.908340 CTTCTGGAGGAGGCCCACTG 61.908 65.000 0.00 0.00 33.88 3.66
3809 8058 2.405357 CACGTCTCGCAGTACAAGAAAG 59.595 50.000 0.00 0.00 0.00 2.62
3812 8061 0.949397 ACACGTCTCGCAGTACAAGA 59.051 50.000 0.00 0.00 0.00 3.02
3813 8062 2.095869 ACTACACGTCTCGCAGTACAAG 60.096 50.000 0.00 0.00 0.00 3.16
3821 8070 5.835911 TGATATAGTACTACACGTCTCGC 57.164 43.478 4.31 0.00 0.00 5.03
3823 8072 8.016229 CCATGTTGATATAGTACTACACGTCTC 58.984 40.741 4.31 0.00 0.00 3.36
3833 8082 4.878439 TGTCGCCCATGTTGATATAGTAC 58.122 43.478 0.00 0.00 0.00 2.73
3836 8085 3.187227 GCTTGTCGCCCATGTTGATATAG 59.813 47.826 0.00 0.00 0.00 1.31
3839 8088 1.378531 GCTTGTCGCCCATGTTGATA 58.621 50.000 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.