Multiple sequence alignment - TraesCS3A01G474700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G474700 chr3A 100.000 2704 0 0 1 2704 706202316 706205019 0.000000e+00 4994
1 TraesCS3A01G474700 chr2A 96.293 2320 65 10 1 2299 130066350 130064031 0.000000e+00 3788
2 TraesCS3A01G474700 chr5A 94.620 2342 75 19 1 2299 168957345 168959678 0.000000e+00 3579
3 TraesCS3A01G474700 chr6A 94.397 2338 69 17 1 2299 276499067 276501381 0.000000e+00 3535
4 TraesCS3A01G474700 chr1A 96.148 1869 55 6 448 2299 347418689 347416821 0.000000e+00 3037
5 TraesCS3A01G474700 chr1D 97.170 1555 44 0 1 1555 487307374 487305820 0.000000e+00 2628
6 TraesCS3A01G474700 chr1D 96.592 1555 50 2 1 1555 30698305 30696754 0.000000e+00 2575
7 TraesCS3A01G474700 chr1D 93.455 764 31 7 1553 2299 30696721 30695960 0.000000e+00 1116
8 TraesCS3A01G474700 chr1D 93.544 759 32 6 1553 2294 487305787 487305029 0.000000e+00 1114
9 TraesCS3A01G474700 chr3D 96.913 1555 48 0 1 1555 465175691 465177245 0.000000e+00 2606
10 TraesCS3A01G474700 chr3D 96.913 1555 47 1 1 1555 516403664 516402111 0.000000e+00 2604
11 TraesCS3A01G474700 chr3D 93.979 764 29 6 1553 2299 516402078 516401315 0.000000e+00 1140
12 TraesCS3A01G474700 chr3D 92.894 774 37 7 1553 2309 465177278 465178050 0.000000e+00 1109
13 TraesCS3A01G474700 chr3D 95.599 409 12 4 2300 2704 49535200 49534794 0.000000e+00 651
14 TraesCS3A01G474700 chr3D 93.605 344 14 3 2315 2654 464255068 464255407 8.640000e-140 507
15 TraesCS3A01G474700 chr3D 93.023 344 19 4 2315 2654 559911816 559911474 5.200000e-137 497
16 TraesCS3A01G474700 chr2B 95.956 1558 58 4 1 1555 431356 432911 0.000000e+00 2523
17 TraesCS3A01G474700 chr2B 92.801 764 38 7 1553 2299 432944 433707 0.000000e+00 1090
18 TraesCS3A01G474700 chr7A 95.624 1554 66 2 1 1554 303752226 303750675 0.000000e+00 2492
19 TraesCS3A01G474700 chr7A 93.734 766 31 6 1553 2301 303750641 303749876 0.000000e+00 1133
20 TraesCS3A01G474700 chr7D 96.324 408 10 3 2300 2704 213754891 213754486 0.000000e+00 665
21 TraesCS3A01G474700 chr7D 94.377 409 19 2 2300 2704 631352437 631352029 2.290000e-175 625
22 TraesCS3A01G474700 chr5D 95.833 408 13 3 2300 2704 561564462 561564868 0.000000e+00 656
23 TraesCS3A01G474700 chr5D 92.479 359 20 6 2300 2654 548527722 548527367 8.640000e-140 507
24 TraesCS3A01G474700 chr5D 92.437 357 22 3 2300 2654 540231425 540231072 3.110000e-139 505
25 TraesCS3A01G474700 chr6D 94.866 409 16 3 2300 2704 312200265 312200672 3.800000e-178 634


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G474700 chr3A 706202316 706205019 2703 False 4994.0 4994 100.0000 1 2704 1 chr3A.!!$F1 2703
1 TraesCS3A01G474700 chr2A 130064031 130066350 2319 True 3788.0 3788 96.2930 1 2299 1 chr2A.!!$R1 2298
2 TraesCS3A01G474700 chr5A 168957345 168959678 2333 False 3579.0 3579 94.6200 1 2299 1 chr5A.!!$F1 2298
3 TraesCS3A01G474700 chr6A 276499067 276501381 2314 False 3535.0 3535 94.3970 1 2299 1 chr6A.!!$F1 2298
4 TraesCS3A01G474700 chr1A 347416821 347418689 1868 True 3037.0 3037 96.1480 448 2299 1 chr1A.!!$R1 1851
5 TraesCS3A01G474700 chr1D 487305029 487307374 2345 True 1871.0 2628 95.3570 1 2294 2 chr1D.!!$R2 2293
6 TraesCS3A01G474700 chr1D 30695960 30698305 2345 True 1845.5 2575 95.0235 1 2299 2 chr1D.!!$R1 2298
7 TraesCS3A01G474700 chr3D 516401315 516403664 2349 True 1872.0 2604 95.4460 1 2299 2 chr3D.!!$R3 2298
8 TraesCS3A01G474700 chr3D 465175691 465178050 2359 False 1857.5 2606 94.9035 1 2309 2 chr3D.!!$F2 2308
9 TraesCS3A01G474700 chr2B 431356 433707 2351 False 1806.5 2523 94.3785 1 2299 2 chr2B.!!$F1 2298
10 TraesCS3A01G474700 chr7A 303749876 303752226 2350 True 1812.5 2492 94.6790 1 2301 2 chr7A.!!$R1 2300

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 3.663176 TGCTTCGTGCTTGCCTGC 61.663 61.111 5.0 0.0 43.37 4.85 F
826 831 5.176592 ACCTTCAACTAAGACTATTTCCGC 58.823 41.667 0.0 0.0 37.38 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1070 1077 1.711206 GCGGACAGTTACCAGAACTC 58.289 55.0 0.00 0.0 0.0 3.01 R
2379 2445 0.032130 ATATGCGGCCGACTAGTGTG 59.968 55.0 33.48 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 3.663176 TGCTTCGTGCTTGCCTGC 61.663 61.111 5.00 0.00 43.37 4.85
102 103 7.335924 TGCCTAATTGCTTGGTTAGTTTACTAG 59.664 37.037 0.00 0.00 0.00 2.57
228 230 8.597662 ATGCTGGAAAATTTGATGCATTATAC 57.402 30.769 0.00 0.00 36.44 1.47
826 831 5.176592 ACCTTCAACTAAGACTATTTCCGC 58.823 41.667 0.00 0.00 37.38 5.54
842 847 7.990886 ACTATTTCCGCTGAGGTGATTATTTAA 59.009 33.333 0.00 0.00 41.99 1.52
957 964 6.847956 TGTGTACCTATTGTTGTGTGTAAC 57.152 37.500 0.00 0.00 37.35 2.50
1070 1077 4.335874 AGATACAGCAGTGTCCGTAGTAAG 59.664 45.833 2.32 0.00 36.63 2.34
1314 1321 6.816640 TGTTCCATACAAGCAGTGTCTATTAC 59.183 38.462 0.00 0.00 41.98 1.89
1430 1437 4.804108 TGTTTGTTTTGTGACCTGAAGTG 58.196 39.130 0.00 0.00 0.00 3.16
1627 1669 1.211703 ACGGATGATTACATGGGTGCA 59.788 47.619 0.00 0.00 36.82 4.57
1820 1868 7.992754 AGTTTTGCTGTCAAGAGAATATTCT 57.007 32.000 17.96 17.96 41.00 2.40
2073 2122 5.859205 AGTAATGGGATTTGAAATCCTGC 57.141 39.130 29.86 18.18 38.26 4.85
2090 2139 7.419711 AATCCTGCAGATGAGATTTGAATTT 57.580 32.000 17.39 0.00 34.56 1.82
2133 2182 7.307694 ACGTATATGAGTGTTGTAAAAGTCGA 58.692 34.615 0.00 0.00 0.00 4.20
2176 2225 3.286329 ACAGTTCCTTTTACCAACGGT 57.714 42.857 0.00 0.00 40.16 4.83
2177 2226 3.623703 ACAGTTCCTTTTACCAACGGTT 58.376 40.909 0.00 0.00 37.09 4.44
2178 2227 3.628942 ACAGTTCCTTTTACCAACGGTTC 59.371 43.478 0.00 0.00 37.09 3.62
2179 2228 3.004002 CAGTTCCTTTTACCAACGGTTCC 59.996 47.826 0.00 0.00 37.09 3.62
2180 2229 3.117776 AGTTCCTTTTACCAACGGTTCCT 60.118 43.478 0.00 0.00 37.09 3.36
2182 2231 3.900971 TCCTTTTACCAACGGTTCCTTT 58.099 40.909 0.00 0.00 37.09 3.11
2199 2265 6.015772 GGTTCCTTTTAGCAACACTGGATAAA 60.016 38.462 0.00 0.00 0.00 1.40
2211 2277 2.061773 CTGGATAAAGCTACGCATCCG 58.938 52.381 9.83 0.00 39.92 4.18
2223 2289 1.500396 GCATCCGAAACCGTTGGTC 59.500 57.895 0.00 0.00 33.12 4.02
2255 2321 7.201644 GCTAGCAACGCATATATGGACATTTAT 60.202 37.037 10.63 0.00 0.00 1.40
2302 2368 1.270678 GGGGTCCTGTTGTAGTGTGTC 60.271 57.143 0.00 0.00 0.00 3.67
2303 2369 1.270678 GGGTCCTGTTGTAGTGTGTCC 60.271 57.143 0.00 0.00 0.00 4.02
2309 2375 3.502920 CTGTTGTAGTGTGTCCTCGATC 58.497 50.000 0.00 0.00 0.00 3.69
2310 2376 2.095415 TGTTGTAGTGTGTCCTCGATCG 60.095 50.000 9.36 9.36 0.00 3.69
2311 2377 1.092348 TGTAGTGTGTCCTCGATCGG 58.908 55.000 16.41 5.93 0.00 4.18
2312 2378 1.339342 TGTAGTGTGTCCTCGATCGGA 60.339 52.381 16.41 2.18 0.00 4.55
2321 2387 3.431922 TCCTCGATCGGACACAATTAC 57.568 47.619 16.41 0.00 0.00 1.89
2322 2388 2.756207 TCCTCGATCGGACACAATTACA 59.244 45.455 16.41 0.00 0.00 2.41
2323 2389 3.383505 TCCTCGATCGGACACAATTACAT 59.616 43.478 16.41 0.00 0.00 2.29
2324 2390 3.490896 CCTCGATCGGACACAATTACATG 59.509 47.826 16.41 0.00 0.00 3.21
2325 2391 4.112634 CTCGATCGGACACAATTACATGT 58.887 43.478 16.41 2.69 0.00 3.21
2326 2392 4.109766 TCGATCGGACACAATTACATGTC 58.890 43.478 16.41 7.74 43.75 3.06
2327 2393 3.862845 CGATCGGACACAATTACATGTCA 59.137 43.478 7.38 0.00 45.83 3.58
2328 2394 4.507756 CGATCGGACACAATTACATGTCAT 59.492 41.667 7.38 0.00 45.83 3.06
2329 2395 5.006649 CGATCGGACACAATTACATGTCATT 59.993 40.000 7.38 0.00 45.83 2.57
2330 2396 5.794687 TCGGACACAATTACATGTCATTC 57.205 39.130 0.00 0.00 45.83 2.67
2331 2397 4.328712 TCGGACACAATTACATGTCATTCG 59.671 41.667 0.00 3.10 45.83 3.34
2332 2398 4.342772 GGACACAATTACATGTCATTCGC 58.657 43.478 0.00 0.00 45.83 4.70
2333 2399 4.142708 GGACACAATTACATGTCATTCGCA 60.143 41.667 0.00 0.00 45.83 5.10
2334 2400 5.449041 GGACACAATTACATGTCATTCGCAT 60.449 40.000 0.00 0.00 45.83 4.73
2335 2401 5.334319 ACACAATTACATGTCATTCGCATG 58.666 37.500 0.00 1.92 46.51 4.06
2336 2402 4.205588 CACAATTACATGTCATTCGCATGC 59.794 41.667 7.91 7.91 45.40 4.06
2337 2403 4.142425 ACAATTACATGTCATTCGCATGCA 60.142 37.500 19.57 0.00 45.40 3.96
2338 2404 4.635833 ATTACATGTCATTCGCATGCAA 57.364 36.364 19.57 11.51 45.40 4.08
2339 2405 4.431661 TTACATGTCATTCGCATGCAAA 57.568 36.364 19.57 5.86 45.40 3.68
2340 2406 3.513680 ACATGTCATTCGCATGCAAAT 57.486 38.095 19.57 8.55 45.40 2.32
2341 2407 3.852286 ACATGTCATTCGCATGCAAATT 58.148 36.364 19.57 0.00 45.40 1.82
2342 2408 4.996344 ACATGTCATTCGCATGCAAATTA 58.004 34.783 19.57 0.00 45.40 1.40
2343 2409 4.799949 ACATGTCATTCGCATGCAAATTAC 59.200 37.500 19.57 13.36 45.40 1.89
2344 2410 4.700268 TGTCATTCGCATGCAAATTACT 57.300 36.364 19.57 0.00 0.00 2.24
2345 2411 5.058149 TGTCATTCGCATGCAAATTACTT 57.942 34.783 19.57 0.00 0.00 2.24
2346 2412 5.468592 TGTCATTCGCATGCAAATTACTTT 58.531 33.333 19.57 0.00 0.00 2.66
2347 2413 5.925397 TGTCATTCGCATGCAAATTACTTTT 59.075 32.000 19.57 0.00 0.00 2.27
2348 2414 6.423302 TGTCATTCGCATGCAAATTACTTTTT 59.577 30.769 19.57 0.00 0.00 1.94
2387 2453 8.752005 AATATTGATACCATTTGCACACTAGT 57.248 30.769 0.00 0.00 0.00 2.57
2388 2454 6.683974 ATTGATACCATTTGCACACTAGTC 57.316 37.500 0.00 0.00 0.00 2.59
2389 2455 4.180817 TGATACCATTTGCACACTAGTCG 58.819 43.478 0.00 0.00 0.00 4.18
2390 2456 1.808411 ACCATTTGCACACTAGTCGG 58.192 50.000 0.00 0.00 0.00 4.79
2391 2457 0.447801 CCATTTGCACACTAGTCGGC 59.552 55.000 8.08 8.08 0.00 5.54
2392 2458 0.447801 CATTTGCACACTAGTCGGCC 59.552 55.000 11.63 0.00 0.00 6.13
2393 2459 1.019278 ATTTGCACACTAGTCGGCCG 61.019 55.000 22.12 22.12 0.00 6.13
2394 2460 4.735132 TGCACACTAGTCGGCCGC 62.735 66.667 23.51 16.31 0.00 6.53
2395 2461 4.735132 GCACACTAGTCGGCCGCA 62.735 66.667 23.51 6.75 0.00 5.69
2396 2462 2.184322 CACACTAGTCGGCCGCAT 59.816 61.111 23.51 14.16 0.00 4.73
2397 2463 1.435925 CACACTAGTCGGCCGCATA 59.564 57.895 23.51 14.59 0.00 3.14
2398 2464 0.032130 CACACTAGTCGGCCGCATAT 59.968 55.000 23.51 8.44 0.00 1.78
2399 2465 1.268625 CACACTAGTCGGCCGCATATA 59.731 52.381 23.51 9.21 0.00 0.86
2400 2466 1.540267 ACACTAGTCGGCCGCATATAG 59.460 52.381 23.51 20.06 0.00 1.31
2401 2467 1.540267 CACTAGTCGGCCGCATATAGT 59.460 52.381 23.51 20.70 0.00 2.12
2402 2468 2.030185 CACTAGTCGGCCGCATATAGTT 60.030 50.000 23.51 7.46 0.00 2.24
2403 2469 3.189910 CACTAGTCGGCCGCATATAGTTA 59.810 47.826 23.51 0.00 0.00 2.24
2404 2470 4.015084 ACTAGTCGGCCGCATATAGTTAT 58.985 43.478 23.51 1.31 0.00 1.89
2405 2471 3.955650 AGTCGGCCGCATATAGTTATT 57.044 42.857 23.51 0.00 0.00 1.40
2406 2472 3.846360 AGTCGGCCGCATATAGTTATTC 58.154 45.455 23.51 0.00 0.00 1.75
2407 2473 2.597305 GTCGGCCGCATATAGTTATTCG 59.403 50.000 23.51 0.00 0.00 3.34
2408 2474 2.229543 TCGGCCGCATATAGTTATTCGT 59.770 45.455 23.51 0.00 0.00 3.85
2409 2475 2.597305 CGGCCGCATATAGTTATTCGTC 59.403 50.000 14.67 0.00 0.00 4.20
2410 2476 2.597305 GGCCGCATATAGTTATTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2411 2477 2.597305 GCCGCATATAGTTATTCGTCGG 59.403 50.000 0.00 0.00 37.60 4.79
2412 2478 3.829948 CCGCATATAGTTATTCGTCGGT 58.170 45.455 0.00 0.00 0.00 4.69
2413 2479 3.850273 CCGCATATAGTTATTCGTCGGTC 59.150 47.826 0.00 0.00 0.00 4.79
2414 2480 4.469552 CGCATATAGTTATTCGTCGGTCA 58.530 43.478 0.00 0.00 0.00 4.02
2415 2481 4.320164 CGCATATAGTTATTCGTCGGTCAC 59.680 45.833 0.00 0.00 0.00 3.67
2416 2482 5.217393 GCATATAGTTATTCGTCGGTCACA 58.783 41.667 0.00 0.00 0.00 3.58
2417 2483 5.342525 GCATATAGTTATTCGTCGGTCACAG 59.657 44.000 0.00 0.00 0.00 3.66
2418 2484 6.665465 CATATAGTTATTCGTCGGTCACAGA 58.335 40.000 0.00 0.00 0.00 3.41
2419 2485 3.213249 AGTTATTCGTCGGTCACAGAC 57.787 47.619 0.00 0.00 35.41 3.51
2420 2486 2.555325 AGTTATTCGTCGGTCACAGACA 59.445 45.455 8.88 0.00 38.46 3.41
2421 2487 3.005050 AGTTATTCGTCGGTCACAGACAA 59.995 43.478 8.88 2.69 38.46 3.18
2422 2488 2.743636 ATTCGTCGGTCACAGACAAT 57.256 45.000 8.88 4.77 38.46 2.71
2423 2489 2.519377 TTCGTCGGTCACAGACAATT 57.481 45.000 8.88 0.00 38.46 2.32
2424 2490 3.646611 TTCGTCGGTCACAGACAATTA 57.353 42.857 8.88 0.00 38.46 1.40
2425 2491 3.646611 TCGTCGGTCACAGACAATTAA 57.353 42.857 8.88 0.00 38.46 1.40
2426 2492 3.979948 TCGTCGGTCACAGACAATTAAA 58.020 40.909 8.88 0.00 38.46 1.52
2427 2493 4.562082 TCGTCGGTCACAGACAATTAAAT 58.438 39.130 8.88 0.00 38.46 1.40
2428 2494 4.992319 TCGTCGGTCACAGACAATTAAATT 59.008 37.500 8.88 0.00 38.46 1.82
2429 2495 5.079406 CGTCGGTCACAGACAATTAAATTG 58.921 41.667 8.88 0.00 45.59 2.32
2561 2627 9.750125 AAACAAGATGACATAAAAAGAAGGAAC 57.250 29.630 0.00 0.00 0.00 3.62
2562 2628 8.463930 ACAAGATGACATAAAAAGAAGGAACA 57.536 30.769 0.00 0.00 0.00 3.18
2563 2629 8.571336 ACAAGATGACATAAAAAGAAGGAACAG 58.429 33.333 0.00 0.00 0.00 3.16
2564 2630 8.786898 CAAGATGACATAAAAAGAAGGAACAGA 58.213 33.333 0.00 0.00 0.00 3.41
2565 2631 8.558973 AGATGACATAAAAAGAAGGAACAGAG 57.441 34.615 0.00 0.00 0.00 3.35
2566 2632 6.560253 TGACATAAAAAGAAGGAACAGAGC 57.440 37.500 0.00 0.00 0.00 4.09
2567 2633 6.061441 TGACATAAAAAGAAGGAACAGAGCA 58.939 36.000 0.00 0.00 0.00 4.26
2568 2634 6.716628 TGACATAAAAAGAAGGAACAGAGCAT 59.283 34.615 0.00 0.00 0.00 3.79
2569 2635 7.231317 TGACATAAAAAGAAGGAACAGAGCATT 59.769 33.333 0.00 0.00 0.00 3.56
2570 2636 8.635765 ACATAAAAAGAAGGAACAGAGCATTA 57.364 30.769 0.00 0.00 0.00 1.90
2571 2637 8.734386 ACATAAAAAGAAGGAACAGAGCATTAG 58.266 33.333 0.00 0.00 0.00 1.73
2572 2638 5.635417 AAAAGAAGGAACAGAGCATTAGC 57.365 39.130 0.00 0.00 42.56 3.09
2573 2639 3.988976 AGAAGGAACAGAGCATTAGCA 57.011 42.857 0.00 0.00 45.49 3.49
2574 2640 4.292186 AGAAGGAACAGAGCATTAGCAA 57.708 40.909 0.00 0.00 45.49 3.91
2575 2641 4.853007 AGAAGGAACAGAGCATTAGCAAT 58.147 39.130 0.00 0.00 45.49 3.56
2576 2642 4.639310 AGAAGGAACAGAGCATTAGCAATG 59.361 41.667 4.97 4.97 45.49 2.82
2609 2675 6.613755 AAAATAAGAGCTACGTTGTGTTGT 57.386 33.333 0.00 0.00 0.00 3.32
2610 2676 5.591643 AATAAGAGCTACGTTGTGTTGTG 57.408 39.130 0.00 0.00 0.00 3.33
2611 2677 2.596904 AGAGCTACGTTGTGTTGTGT 57.403 45.000 0.00 0.00 0.00 3.72
2612 2678 3.720949 AGAGCTACGTTGTGTTGTGTA 57.279 42.857 0.00 0.00 0.00 2.90
2613 2679 3.639538 AGAGCTACGTTGTGTTGTGTAG 58.360 45.455 0.00 0.00 37.84 2.74
2617 2683 4.725556 CTACGTTGTGTTGTGTAGCAAT 57.274 40.909 0.00 0.00 39.55 3.56
2618 2684 5.832568 CTACGTTGTGTTGTGTAGCAATA 57.167 39.130 0.00 0.00 39.55 1.90
2619 2685 4.461992 ACGTTGTGTTGTGTAGCAATAC 57.538 40.909 0.00 0.00 45.62 1.89
2628 2694 1.735571 GTGTAGCAATACACCAACGGG 59.264 52.381 7.20 0.00 43.24 5.28
2629 2695 1.624312 TGTAGCAATACACCAACGGGA 59.376 47.619 0.00 0.00 38.05 5.14
2630 2696 2.004733 GTAGCAATACACCAACGGGAC 58.995 52.381 0.00 0.00 38.05 4.46
2631 2697 0.398696 AGCAATACACCAACGGGACA 59.601 50.000 0.00 0.00 38.05 4.02
2632 2698 1.202830 AGCAATACACCAACGGGACAA 60.203 47.619 0.00 0.00 38.05 3.18
2633 2699 1.816224 GCAATACACCAACGGGACAAT 59.184 47.619 0.00 0.00 38.05 2.71
2634 2700 3.011119 GCAATACACCAACGGGACAATA 58.989 45.455 0.00 0.00 38.05 1.90
2635 2701 3.630312 GCAATACACCAACGGGACAATAT 59.370 43.478 0.00 0.00 38.05 1.28
2636 2702 4.097286 GCAATACACCAACGGGACAATATT 59.903 41.667 0.00 0.00 38.05 1.28
2637 2703 5.732247 GCAATACACCAACGGGACAATATTC 60.732 44.000 0.00 0.00 38.05 1.75
2638 2704 3.713826 ACACCAACGGGACAATATTCT 57.286 42.857 0.00 0.00 38.05 2.40
2639 2705 4.829872 ACACCAACGGGACAATATTCTA 57.170 40.909 0.00 0.00 38.05 2.10
2640 2706 4.766375 ACACCAACGGGACAATATTCTAG 58.234 43.478 0.00 0.00 38.05 2.43
2641 2707 3.560068 CACCAACGGGACAATATTCTAGC 59.440 47.826 0.00 0.00 38.05 3.42
2642 2708 3.199071 ACCAACGGGACAATATTCTAGCA 59.801 43.478 0.00 0.00 38.05 3.49
2643 2709 4.196193 CCAACGGGACAATATTCTAGCAA 58.804 43.478 0.00 0.00 35.59 3.91
2644 2710 4.821805 CCAACGGGACAATATTCTAGCAAT 59.178 41.667 0.00 0.00 35.59 3.56
2645 2711 5.299279 CCAACGGGACAATATTCTAGCAATT 59.701 40.000 0.00 0.00 35.59 2.32
2646 2712 6.430451 CAACGGGACAATATTCTAGCAATTC 58.570 40.000 0.00 0.00 0.00 2.17
2647 2713 5.063880 ACGGGACAATATTCTAGCAATTCC 58.936 41.667 0.00 0.00 0.00 3.01
2648 2714 5.063204 CGGGACAATATTCTAGCAATTCCA 58.937 41.667 0.00 0.00 0.00 3.53
2649 2715 5.180117 CGGGACAATATTCTAGCAATTCCAG 59.820 44.000 0.00 0.00 0.00 3.86
2650 2716 6.064717 GGGACAATATTCTAGCAATTCCAGT 58.935 40.000 0.00 0.00 0.00 4.00
2651 2717 7.224297 GGGACAATATTCTAGCAATTCCAGTA 58.776 38.462 0.00 0.00 0.00 2.74
2652 2718 7.719633 GGGACAATATTCTAGCAATTCCAGTAA 59.280 37.037 0.00 0.00 0.00 2.24
2653 2719 9.120538 GGACAATATTCTAGCAATTCCAGTAAA 57.879 33.333 0.00 0.00 0.00 2.01
2654 2720 9.937175 GACAATATTCTAGCAATTCCAGTAAAC 57.063 33.333 0.00 0.00 0.00 2.01
2655 2721 9.686683 ACAATATTCTAGCAATTCCAGTAAACT 57.313 29.630 0.00 0.00 0.00 2.66
2659 2725 8.950208 ATTCTAGCAATTCCAGTAAACTAGAC 57.050 34.615 0.00 0.00 35.59 2.59
2660 2726 7.476540 TCTAGCAATTCCAGTAAACTAGACA 57.523 36.000 0.00 0.00 32.01 3.41
2661 2727 7.903145 TCTAGCAATTCCAGTAAACTAGACAA 58.097 34.615 0.00 0.00 32.01 3.18
2662 2728 8.540388 TCTAGCAATTCCAGTAAACTAGACAAT 58.460 33.333 0.00 0.00 32.01 2.71
2663 2729 9.167311 CTAGCAATTCCAGTAAACTAGACAATT 57.833 33.333 0.00 0.00 0.00 2.32
2664 2730 8.409358 AGCAATTCCAGTAAACTAGACAATTT 57.591 30.769 0.00 0.00 0.00 1.82
2665 2731 9.515226 AGCAATTCCAGTAAACTAGACAATTTA 57.485 29.630 0.00 0.00 0.00 1.40
2666 2732 9.774742 GCAATTCCAGTAAACTAGACAATTTAG 57.225 33.333 0.00 0.00 0.00 1.85
2685 2751 9.274065 CAATTTAGTTTTTCCTATTACTCACGC 57.726 33.333 0.00 0.00 0.00 5.34
2686 2752 6.636666 TTAGTTTTTCCTATTACTCACGCG 57.363 37.500 3.53 3.53 0.00 6.01
2687 2753 3.370061 AGTTTTTCCTATTACTCACGCGC 59.630 43.478 5.73 0.00 0.00 6.86
2688 2754 1.552226 TTTCCTATTACTCACGCGCG 58.448 50.000 30.96 30.96 0.00 6.86
2689 2755 0.734309 TTCCTATTACTCACGCGCGA 59.266 50.000 39.36 14.99 0.00 5.87
2690 2756 0.306840 TCCTATTACTCACGCGCGAG 59.693 55.000 39.36 30.24 39.05 5.03
2702 2768 3.832171 CGCGAGCGTCTTCTGTGC 61.832 66.667 0.00 0.00 34.35 4.57
2703 2769 2.734723 GCGAGCGTCTTCTGTGCA 60.735 61.111 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 9.099454 CTCTAGTAAACTAACCAAGCAATTAGG 57.901 37.037 0.00 0.00 33.47 2.69
228 230 9.639601 TGTTGCTATATATCTAAATCAGGAACG 57.360 33.333 8.40 0.00 36.16 3.95
698 703 1.068264 TGCGCACAAACAAACAGTGAA 60.068 42.857 5.66 0.00 35.33 3.18
957 964 0.447801 GTGCGGTGCCTCACATTAAG 59.552 55.000 6.48 0.00 35.86 1.85
1070 1077 1.711206 GCGGACAGTTACCAGAACTC 58.289 55.000 0.00 0.00 0.00 3.01
1314 1321 5.526010 ACTTAGTTGACGGATTAAAAGCG 57.474 39.130 0.00 0.00 0.00 4.68
1627 1669 5.379187 TCATCATTGCAGTATACTTGCCAT 58.621 37.500 18.52 13.09 0.00 4.40
1820 1868 3.929955 TCCAGATGTGATGCATAACCA 57.070 42.857 11.88 3.41 38.06 3.67
2073 2122 7.387119 TGTCCAGAAATTCAAATCTCATCTG 57.613 36.000 0.00 0.00 34.15 2.90
2090 2139 2.105134 ACGTTGGTGGTTAATGTCCAGA 59.895 45.455 0.00 0.00 35.49 3.86
2158 2207 3.117776 AGGAACCGTTGGTAAAAGGAACT 60.118 43.478 0.00 0.00 38.23 3.01
2176 2225 6.294508 GCTTTATCCAGTGTTGCTAAAAGGAA 60.295 38.462 0.00 0.00 0.00 3.36
2177 2226 5.183140 GCTTTATCCAGTGTTGCTAAAAGGA 59.817 40.000 0.00 0.00 0.00 3.36
2178 2227 5.183904 AGCTTTATCCAGTGTTGCTAAAAGG 59.816 40.000 0.00 0.00 0.00 3.11
2179 2228 6.259550 AGCTTTATCCAGTGTTGCTAAAAG 57.740 37.500 0.00 0.00 0.00 2.27
2180 2229 6.128391 CGTAGCTTTATCCAGTGTTGCTAAAA 60.128 38.462 0.00 0.00 34.09 1.52
2182 2231 4.868171 CGTAGCTTTATCCAGTGTTGCTAA 59.132 41.667 0.00 0.00 34.09 3.09
2211 2277 0.041576 GCGTCTTGACCAACGGTTTC 60.042 55.000 0.00 0.00 39.24 2.78
2223 2289 1.277326 TATGCGTTGCTAGCGTCTTG 58.723 50.000 10.77 0.00 37.44 3.02
2270 2336 3.602608 ACAGGACCCCTCATATAGCAAT 58.397 45.455 0.00 0.00 0.00 3.56
2302 2368 3.159353 TGTAATTGTGTCCGATCGAGG 57.841 47.619 18.66 0.00 0.00 4.63
2303 2369 4.112634 ACATGTAATTGTGTCCGATCGAG 58.887 43.478 18.66 6.99 0.00 4.04
2309 2375 4.577639 CGAATGACATGTAATTGTGTCCG 58.422 43.478 13.47 6.39 43.09 4.79
2310 2376 4.142708 TGCGAATGACATGTAATTGTGTCC 60.143 41.667 13.47 0.00 43.09 4.02
2311 2377 4.968626 TGCGAATGACATGTAATTGTGTC 58.031 39.130 13.47 11.35 43.81 3.67
2312 2378 5.334319 CATGCGAATGACATGTAATTGTGT 58.666 37.500 13.47 0.00 40.04 3.72
2313 2379 4.205588 GCATGCGAATGACATGTAATTGTG 59.794 41.667 13.47 6.76 45.40 3.33
2314 2380 4.142425 TGCATGCGAATGACATGTAATTGT 60.142 37.500 13.47 0.00 45.40 2.71
2315 2381 4.352887 TGCATGCGAATGACATGTAATTG 58.647 39.130 13.47 7.01 45.40 2.32
2316 2382 4.635833 TGCATGCGAATGACATGTAATT 57.364 36.364 14.09 8.26 45.40 1.40
2317 2383 4.635833 TTGCATGCGAATGACATGTAAT 57.364 36.364 14.09 0.00 42.64 1.89
2318 2384 4.431661 TTTGCATGCGAATGACATGTAA 57.568 36.364 16.65 3.48 44.76 2.41
2319 2385 4.635833 ATTTGCATGCGAATGACATGTA 57.364 36.364 28.60 2.50 45.40 2.29
2320 2386 3.513680 ATTTGCATGCGAATGACATGT 57.486 38.095 28.60 7.08 45.40 3.21
2321 2387 5.038683 AGTAATTTGCATGCGAATGACATG 58.961 37.500 35.09 1.20 46.19 3.21
2322 2388 5.252969 AGTAATTTGCATGCGAATGACAT 57.747 34.783 35.09 23.26 34.85 3.06
2323 2389 4.700268 AGTAATTTGCATGCGAATGACA 57.300 36.364 35.09 21.52 34.85 3.58
2324 2390 6.393720 AAAAGTAATTTGCATGCGAATGAC 57.606 33.333 30.22 30.22 33.31 3.06
2361 2427 9.845740 ACTAGTGTGCAAATGGTATCAATATTA 57.154 29.630 0.00 0.00 0.00 0.98
2362 2428 8.752005 ACTAGTGTGCAAATGGTATCAATATT 57.248 30.769 0.00 0.00 0.00 1.28
2363 2429 7.171508 CGACTAGTGTGCAAATGGTATCAATAT 59.828 37.037 0.00 0.00 0.00 1.28
2364 2430 6.478673 CGACTAGTGTGCAAATGGTATCAATA 59.521 38.462 0.00 0.00 0.00 1.90
2365 2431 5.294306 CGACTAGTGTGCAAATGGTATCAAT 59.706 40.000 0.00 0.00 0.00 2.57
2366 2432 4.629634 CGACTAGTGTGCAAATGGTATCAA 59.370 41.667 0.00 0.00 0.00 2.57
2367 2433 4.180817 CGACTAGTGTGCAAATGGTATCA 58.819 43.478 0.00 0.00 0.00 2.15
2368 2434 3.555956 CCGACTAGTGTGCAAATGGTATC 59.444 47.826 0.00 0.00 0.00 2.24
2369 2435 3.531538 CCGACTAGTGTGCAAATGGTAT 58.468 45.455 0.00 0.00 0.00 2.73
2370 2436 2.933492 GCCGACTAGTGTGCAAATGGTA 60.933 50.000 0.00 0.00 0.00 3.25
2371 2437 1.808411 CCGACTAGTGTGCAAATGGT 58.192 50.000 0.00 0.00 0.00 3.55
2372 2438 0.447801 GCCGACTAGTGTGCAAATGG 59.552 55.000 0.00 0.00 0.00 3.16
2373 2439 0.447801 GGCCGACTAGTGTGCAAATG 59.552 55.000 0.00 0.00 0.00 2.32
2374 2440 1.019278 CGGCCGACTAGTGTGCAAAT 61.019 55.000 24.07 0.00 0.00 2.32
2375 2441 1.666553 CGGCCGACTAGTGTGCAAA 60.667 57.895 24.07 0.00 0.00 3.68
2376 2442 2.048597 CGGCCGACTAGTGTGCAA 60.049 61.111 24.07 0.00 0.00 4.08
2377 2443 4.735132 GCGGCCGACTAGTGTGCA 62.735 66.667 33.48 0.00 0.00 4.57
2378 2444 2.622903 TATGCGGCCGACTAGTGTGC 62.623 60.000 33.48 8.12 0.00 4.57
2379 2445 0.032130 ATATGCGGCCGACTAGTGTG 59.968 55.000 33.48 0.00 0.00 3.82
2380 2446 1.540267 CTATATGCGGCCGACTAGTGT 59.460 52.381 33.48 9.69 0.00 3.55
2381 2447 1.540267 ACTATATGCGGCCGACTAGTG 59.460 52.381 33.48 16.35 0.00 2.74
2382 2448 1.906990 ACTATATGCGGCCGACTAGT 58.093 50.000 33.48 23.58 0.00 2.57
2383 2449 4.634184 ATAACTATATGCGGCCGACTAG 57.366 45.455 33.48 22.94 0.00 2.57
2384 2450 4.437794 CGAATAACTATATGCGGCCGACTA 60.438 45.833 33.48 19.56 36.98 2.59
2385 2451 3.672511 CGAATAACTATATGCGGCCGACT 60.673 47.826 33.48 17.78 36.98 4.18
2386 2452 2.597305 CGAATAACTATATGCGGCCGAC 59.403 50.000 33.48 21.14 36.98 4.79
2387 2453 2.229543 ACGAATAACTATATGCGGCCGA 59.770 45.455 33.48 15.19 43.65 5.54
2388 2454 2.597305 GACGAATAACTATATGCGGCCG 59.403 50.000 24.05 24.05 42.03 6.13
2389 2455 2.597305 CGACGAATAACTATATGCGGCC 59.403 50.000 0.00 0.00 44.59 6.13
2390 2456 2.597305 CCGACGAATAACTATATGCGGC 59.403 50.000 0.00 0.00 44.06 6.53
2391 2457 3.829948 ACCGACGAATAACTATATGCGG 58.170 45.455 0.00 0.00 43.65 5.69
2392 2458 4.320164 GTGACCGACGAATAACTATATGCG 59.680 45.833 0.00 0.00 44.70 4.73
2393 2459 5.217393 TGTGACCGACGAATAACTATATGC 58.783 41.667 0.00 0.00 0.00 3.14
2394 2460 6.577800 GTCTGTGACCGACGAATAACTATATG 59.422 42.308 0.00 0.00 0.00 1.78
2395 2461 6.261603 TGTCTGTGACCGACGAATAACTATAT 59.738 38.462 0.00 0.00 34.17 0.86
2396 2462 5.585844 TGTCTGTGACCGACGAATAACTATA 59.414 40.000 0.00 0.00 34.17 1.31
2397 2463 4.397103 TGTCTGTGACCGACGAATAACTAT 59.603 41.667 0.00 0.00 34.17 2.12
2398 2464 3.752747 TGTCTGTGACCGACGAATAACTA 59.247 43.478 0.00 0.00 34.17 2.24
2399 2465 2.555325 TGTCTGTGACCGACGAATAACT 59.445 45.455 0.00 0.00 34.17 2.24
2400 2466 2.937591 TGTCTGTGACCGACGAATAAC 58.062 47.619 0.00 0.00 34.17 1.89
2401 2467 3.646611 TTGTCTGTGACCGACGAATAA 57.353 42.857 0.00 0.00 34.17 1.40
2402 2468 3.861276 ATTGTCTGTGACCGACGAATA 57.139 42.857 1.14 0.00 34.17 1.75
2403 2469 2.743636 ATTGTCTGTGACCGACGAAT 57.256 45.000 1.14 1.27 34.17 3.34
2404 2470 2.519377 AATTGTCTGTGACCGACGAA 57.481 45.000 1.14 0.00 34.17 3.85
2405 2471 3.646611 TTAATTGTCTGTGACCGACGA 57.353 42.857 0.00 0.00 34.17 4.20
2406 2472 4.921470 ATTTAATTGTCTGTGACCGACG 57.079 40.909 2.79 0.00 34.17 5.12
2535 2601 9.750125 GTTCCTTCTTTTTATGTCATCTTGTTT 57.250 29.630 0.00 0.00 0.00 2.83
2536 2602 8.912988 TGTTCCTTCTTTTTATGTCATCTTGTT 58.087 29.630 0.00 0.00 0.00 2.83
2537 2603 8.463930 TGTTCCTTCTTTTTATGTCATCTTGT 57.536 30.769 0.00 0.00 0.00 3.16
2538 2604 8.786898 TCTGTTCCTTCTTTTTATGTCATCTTG 58.213 33.333 0.00 0.00 0.00 3.02
2539 2605 8.924511 TCTGTTCCTTCTTTTTATGTCATCTT 57.075 30.769 0.00 0.00 0.00 2.40
2540 2606 7.120432 GCTCTGTTCCTTCTTTTTATGTCATCT 59.880 37.037 0.00 0.00 0.00 2.90
2541 2607 7.094634 TGCTCTGTTCCTTCTTTTTATGTCATC 60.095 37.037 0.00 0.00 0.00 2.92
2542 2608 6.716628 TGCTCTGTTCCTTCTTTTTATGTCAT 59.283 34.615 0.00 0.00 0.00 3.06
2543 2609 6.061441 TGCTCTGTTCCTTCTTTTTATGTCA 58.939 36.000 0.00 0.00 0.00 3.58
2544 2610 6.560253 TGCTCTGTTCCTTCTTTTTATGTC 57.440 37.500 0.00 0.00 0.00 3.06
2545 2611 7.530426 AATGCTCTGTTCCTTCTTTTTATGT 57.470 32.000 0.00 0.00 0.00 2.29
2546 2612 7.699812 GCTAATGCTCTGTTCCTTCTTTTTATG 59.300 37.037 0.00 0.00 36.03 1.90
2547 2613 7.394359 TGCTAATGCTCTGTTCCTTCTTTTTAT 59.606 33.333 0.00 0.00 40.48 1.40
2548 2614 6.714810 TGCTAATGCTCTGTTCCTTCTTTTTA 59.285 34.615 0.00 0.00 40.48 1.52
2549 2615 5.536161 TGCTAATGCTCTGTTCCTTCTTTTT 59.464 36.000 0.00 0.00 40.48 1.94
2550 2616 5.072741 TGCTAATGCTCTGTTCCTTCTTTT 58.927 37.500 0.00 0.00 40.48 2.27
2551 2617 4.655963 TGCTAATGCTCTGTTCCTTCTTT 58.344 39.130 0.00 0.00 40.48 2.52
2552 2618 4.292186 TGCTAATGCTCTGTTCCTTCTT 57.708 40.909 0.00 0.00 40.48 2.52
2553 2619 3.988976 TGCTAATGCTCTGTTCCTTCT 57.011 42.857 0.00 0.00 40.48 2.85
2554 2620 4.918037 CATTGCTAATGCTCTGTTCCTTC 58.082 43.478 0.00 0.00 40.48 3.46
2555 2621 4.978083 CATTGCTAATGCTCTGTTCCTT 57.022 40.909 0.00 0.00 40.48 3.36
2585 2651 6.910433 CACAACACAACGTAGCTCTTATTTTT 59.090 34.615 0.00 0.00 0.00 1.94
2586 2652 6.037830 ACACAACACAACGTAGCTCTTATTTT 59.962 34.615 0.00 0.00 0.00 1.82
2587 2653 5.526111 ACACAACACAACGTAGCTCTTATTT 59.474 36.000 0.00 0.00 0.00 1.40
2588 2654 5.054477 ACACAACACAACGTAGCTCTTATT 58.946 37.500 0.00 0.00 0.00 1.40
2589 2655 4.628074 ACACAACACAACGTAGCTCTTAT 58.372 39.130 0.00 0.00 0.00 1.73
2590 2656 4.049546 ACACAACACAACGTAGCTCTTA 57.950 40.909 0.00 0.00 0.00 2.10
2591 2657 2.901249 ACACAACACAACGTAGCTCTT 58.099 42.857 0.00 0.00 0.00 2.85
2592 2658 2.596904 ACACAACACAACGTAGCTCT 57.403 45.000 0.00 0.00 0.00 4.09
2595 2661 2.572173 GCTACACAACACAACGTAGC 57.428 50.000 4.81 4.81 46.99 3.58
2596 2662 4.725556 ATTGCTACACAACACAACGTAG 57.274 40.909 0.00 0.00 42.27 3.51
2597 2663 5.048507 TGTATTGCTACACAACACAACGTA 58.951 37.500 0.00 0.00 42.57 3.57
2598 2664 3.872182 TGTATTGCTACACAACACAACGT 59.128 39.130 0.00 0.00 42.57 3.99
2599 2665 4.208355 GTGTATTGCTACACAACACAACG 58.792 43.478 10.50 0.00 46.74 4.10
2609 2675 1.624312 TCCCGTTGGTGTATTGCTACA 59.376 47.619 0.00 0.00 35.48 2.74
2610 2676 2.004733 GTCCCGTTGGTGTATTGCTAC 58.995 52.381 0.00 0.00 0.00 3.58
2611 2677 1.624312 TGTCCCGTTGGTGTATTGCTA 59.376 47.619 0.00 0.00 0.00 3.49
2612 2678 0.398696 TGTCCCGTTGGTGTATTGCT 59.601 50.000 0.00 0.00 0.00 3.91
2613 2679 1.240256 TTGTCCCGTTGGTGTATTGC 58.760 50.000 0.00 0.00 0.00 3.56
2614 2680 5.588648 AGAATATTGTCCCGTTGGTGTATTG 59.411 40.000 0.00 0.00 0.00 1.90
2615 2681 5.751586 AGAATATTGTCCCGTTGGTGTATT 58.248 37.500 0.00 0.00 0.00 1.89
2616 2682 5.367945 AGAATATTGTCCCGTTGGTGTAT 57.632 39.130 0.00 0.00 0.00 2.29
2617 2683 4.829872 AGAATATTGTCCCGTTGGTGTA 57.170 40.909 0.00 0.00 0.00 2.90
2618 2684 3.713826 AGAATATTGTCCCGTTGGTGT 57.286 42.857 0.00 0.00 0.00 4.16
2619 2685 3.560068 GCTAGAATATTGTCCCGTTGGTG 59.440 47.826 0.00 0.00 0.00 4.17
2620 2686 3.199071 TGCTAGAATATTGTCCCGTTGGT 59.801 43.478 0.00 0.00 0.00 3.67
2621 2687 3.804036 TGCTAGAATATTGTCCCGTTGG 58.196 45.455 0.00 0.00 0.00 3.77
2622 2688 6.377327 AATTGCTAGAATATTGTCCCGTTG 57.623 37.500 0.00 0.00 0.00 4.10
2623 2689 5.531287 GGAATTGCTAGAATATTGTCCCGTT 59.469 40.000 0.00 0.00 0.00 4.44
2624 2690 5.063880 GGAATTGCTAGAATATTGTCCCGT 58.936 41.667 0.00 0.00 0.00 5.28
2625 2691 5.063204 TGGAATTGCTAGAATATTGTCCCG 58.937 41.667 0.00 0.00 0.00 5.14
2626 2692 6.064717 ACTGGAATTGCTAGAATATTGTCCC 58.935 40.000 0.00 0.00 0.00 4.46
2627 2693 8.677148 TTACTGGAATTGCTAGAATATTGTCC 57.323 34.615 0.00 0.00 0.00 4.02
2628 2694 9.937175 GTTTACTGGAATTGCTAGAATATTGTC 57.063 33.333 0.00 0.00 0.00 3.18
2629 2695 9.686683 AGTTTACTGGAATTGCTAGAATATTGT 57.313 29.630 0.00 0.00 0.00 2.71
2634 2700 8.540388 TGTCTAGTTTACTGGAATTGCTAGAAT 58.460 33.333 0.00 0.00 36.33 2.40
2635 2701 7.903145 TGTCTAGTTTACTGGAATTGCTAGAA 58.097 34.615 0.00 0.00 36.33 2.10
2636 2702 7.476540 TGTCTAGTTTACTGGAATTGCTAGA 57.523 36.000 0.00 0.00 35.21 2.43
2637 2703 8.723942 ATTGTCTAGTTTACTGGAATTGCTAG 57.276 34.615 0.00 0.00 35.21 3.42
2638 2704 9.515226 AAATTGTCTAGTTTACTGGAATTGCTA 57.485 29.630 0.00 0.00 35.21 3.49
2639 2705 8.409358 AAATTGTCTAGTTTACTGGAATTGCT 57.591 30.769 0.00 0.00 35.21 3.91
2640 2706 9.774742 CTAAATTGTCTAGTTTACTGGAATTGC 57.225 33.333 0.00 0.00 35.21 3.56
2659 2725 9.274065 GCGTGAGTAATAGGAAAAACTAAATTG 57.726 33.333 0.00 0.00 0.00 2.32
2660 2726 8.173130 CGCGTGAGTAATAGGAAAAACTAAATT 58.827 33.333 0.00 0.00 0.00 1.82
2661 2727 7.675637 GCGCGTGAGTAATAGGAAAAACTAAAT 60.676 37.037 8.43 0.00 0.00 1.40
2662 2728 6.401367 GCGCGTGAGTAATAGGAAAAACTAAA 60.401 38.462 8.43 0.00 0.00 1.85
2663 2729 5.062558 GCGCGTGAGTAATAGGAAAAACTAA 59.937 40.000 8.43 0.00 0.00 2.24
2664 2730 4.563976 GCGCGTGAGTAATAGGAAAAACTA 59.436 41.667 8.43 0.00 0.00 2.24
2665 2731 3.370061 GCGCGTGAGTAATAGGAAAAACT 59.630 43.478 8.43 0.00 0.00 2.66
2666 2732 3.667050 GCGCGTGAGTAATAGGAAAAAC 58.333 45.455 8.43 0.00 0.00 2.43
2667 2733 2.346244 CGCGCGTGAGTAATAGGAAAAA 59.654 45.455 24.19 0.00 0.00 1.94
2668 2734 1.921887 CGCGCGTGAGTAATAGGAAAA 59.078 47.619 24.19 0.00 0.00 2.29
2669 2735 1.132834 TCGCGCGTGAGTAATAGGAAA 59.867 47.619 30.98 1.00 0.00 3.13
2670 2736 0.734309 TCGCGCGTGAGTAATAGGAA 59.266 50.000 30.98 1.54 0.00 3.36
2671 2737 0.306840 CTCGCGCGTGAGTAATAGGA 59.693 55.000 35.29 6.62 0.00 2.94
2672 2738 1.269444 GCTCGCGCGTGAGTAATAGG 61.269 60.000 40.25 21.78 38.28 2.57
2673 2739 2.125664 GCTCGCGCGTGAGTAATAG 58.874 57.895 40.25 22.44 38.28 1.73
2674 2740 4.297071 GCTCGCGCGTGAGTAATA 57.703 55.556 40.25 13.39 38.28 0.98
2684 2750 3.832171 CACAGAAGACGCTCGCGC 61.832 66.667 11.65 0.00 44.19 6.86
2685 2751 3.832171 GCACAGAAGACGCTCGCG 61.832 66.667 10.06 10.06 46.03 5.87
2686 2752 2.734723 TGCACAGAAGACGCTCGC 60.735 61.111 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.