Multiple sequence alignment - TraesCS3A01G474600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G474600 chr3A 100.000 4638 0 0 1 4638 706015788 706020425 0.000000e+00 8565.0
1 TraesCS3A01G474600 chr3A 92.406 2818 166 16 1325 4108 706334358 706337161 0.000000e+00 3975.0
2 TraesCS3A01G474600 chr3A 86.966 1312 140 14 2343 3640 706258530 706259824 0.000000e+00 1447.0
3 TraesCS3A01G474600 chr3A 84.343 1156 138 23 2627 3753 705949666 705950807 0.000000e+00 1092.0
4 TraesCS3A01G474600 chr3A 81.916 1117 150 31 1490 2564 705948561 705949667 0.000000e+00 896.0
5 TraesCS3A01G474600 chr3A 80.591 1185 152 40 1520 2653 705369976 705368819 0.000000e+00 843.0
6 TraesCS3A01G474600 chr3A 82.990 582 55 14 82 620 706333476 706334056 1.940000e-133 486.0
7 TraesCS3A01G474600 chr3A 82.216 388 31 12 893 1252 706257183 706257560 2.710000e-77 300.0
8 TraesCS3A01G474600 chr3A 81.132 371 41 8 909 1278 706116809 706117151 2.130000e-68 270.0
9 TraesCS3A01G474600 chr3A 88.235 221 15 7 4142 4353 706337250 706337468 2.140000e-63 254.0
10 TraesCS3A01G474600 chr3A 87.417 151 15 4 3862 4009 706060764 706060913 2.220000e-38 171.0
11 TraesCS3A01G474600 chr3A 81.364 220 24 5 4142 4344 706341880 706342099 3.710000e-36 163.0
12 TraesCS3A01G474600 chr3A 80.180 222 26 6 4142 4346 706061811 706062031 2.890000e-32 150.0
13 TraesCS3A01G474600 chr3A 78.968 252 30 15 742 975 706334108 706334354 2.890000e-32 150.0
14 TraesCS3A01G474600 chr3A 92.593 81 6 0 1162 1242 706402552 706402632 2.930000e-22 117.0
15 TraesCS3A01G474600 chr3A 94.915 59 2 1 4097 4155 706341805 706341862 1.780000e-14 91.6
16 TraesCS3A01G474600 chr3D 93.606 2596 106 15 1560 4108 572509851 572507269 0.000000e+00 3819.0
17 TraesCS3A01G474600 chr3D 85.018 2216 235 38 1472 3640 572489594 572487429 0.000000e+00 2163.0
18 TraesCS3A01G474600 chr3D 82.581 775 62 32 798 1523 572510605 572509855 2.370000e-172 616.0
19 TraesCS3A01G474600 chr3D 84.533 653 68 13 1 620 572511403 572510751 2.370000e-172 616.0
20 TraesCS3A01G474600 chr3D 86.627 501 46 9 941 1422 572490110 572489612 6.830000e-148 534.0
21 TraesCS3A01G474600 chr3D 93.220 177 11 1 4142 4318 572507180 572507005 4.600000e-65 259.0
22 TraesCS3A01G474600 chr3D 82.629 213 22 4 4144 4343 572195368 572195158 1.720000e-39 174.0
23 TraesCS3A01G474600 chr3B 86.827 3454 267 88 743 4108 761368161 761371514 0.000000e+00 3685.0
24 TraesCS3A01G474600 chr3B 84.504 2207 258 37 1474 3640 761393004 761395166 0.000000e+00 2104.0
25 TraesCS3A01G474600 chr3B 86.026 1145 131 15 2627 3753 761004691 761005824 0.000000e+00 1201.0
26 TraesCS3A01G474600 chr3B 85.262 1011 124 14 2644 3640 761195160 761196159 0.000000e+00 1018.0
27 TraesCS3A01G474600 chr3B 80.252 1190 178 35 1510 2653 760492510 760491332 0.000000e+00 843.0
28 TraesCS3A01G474600 chr3B 87.483 727 59 15 1 697 761367362 761368086 0.000000e+00 809.0
29 TraesCS3A01G474600 chr3B 80.759 1107 149 33 1490 2556 761003602 761004684 0.000000e+00 806.0
30 TraesCS3A01G474600 chr3B 89.539 564 31 5 1441 1982 588646938 588646381 0.000000e+00 689.0
31 TraesCS3A01G474600 chr3B 82.629 639 58 19 1 607 761060134 761060751 2.470000e-142 516.0
32 TraesCS3A01G474600 chr3B 81.928 332 29 18 935 1252 761392554 761392868 7.700000e-63 252.0
33 TraesCS3A01G474600 chr3B 81.366 322 37 12 906 1215 761061615 761061925 1.670000e-59 241.0
34 TraesCS3A01G474600 chr3B 83.256 215 21 4 4142 4343 761777583 761777795 2.850000e-42 183.0
35 TraesCS3A01G474600 chr3B 82.946 129 10 7 1007 1125 822265058 822265184 6.350000e-19 106.0
36 TraesCS3A01G474600 chr3B 78.818 203 8 18 954 1125 761003056 761003254 2.280000e-18 104.0
37 TraesCS3A01G474600 chr3B 80.769 78 12 2 3903 3979 761570810 761570885 1.800000e-04 58.4
38 TraesCS3A01G474600 chrUn 82.034 1308 187 32 2391 3673 132058440 132059724 0.000000e+00 1070.0
39 TraesCS3A01G474600 chrUn 89.773 176 12 2 939 1108 131949058 131949233 2.170000e-53 220.0
40 TraesCS3A01G474600 chr4B 90.065 614 34 6 1441 2032 566641640 566641032 0.000000e+00 771.0
41 TraesCS3A01G474600 chr4B 90.071 564 28 5 1441 1982 635260398 635259841 0.000000e+00 706.0
42 TraesCS3A01G474600 chr4B 89.204 565 31 7 1441 1982 649510968 649511525 0.000000e+00 678.0
43 TraesCS3A01G474600 chr2B 89.716 564 30 5 1441 1982 785017857 785018414 0.000000e+00 695.0
44 TraesCS3A01G474600 chr2B 89.362 564 31 8 1441 1982 76638547 76639103 0.000000e+00 682.0
45 TraesCS3A01G474600 chr5B 89.539 564 31 5 1441 1982 325492860 325493417 0.000000e+00 689.0
46 TraesCS3A01G474600 chr6B 89.362 564 32 5 1441 1982 508957645 508957088 0.000000e+00 684.0
47 TraesCS3A01G474600 chr6B 89.362 564 32 5 1441 1982 647671717 647672274 0.000000e+00 684.0
48 TraesCS3A01G474600 chr1D 85.417 480 46 11 105 561 96699487 96699965 1.170000e-130 477.0
49 TraesCS3A01G474600 chr1B 81.735 438 45 10 215 620 14562394 14562828 2.670000e-87 333.0
50 TraesCS3A01G474600 chr7D 87.649 251 30 1 23 272 472884137 472883887 1.630000e-74 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G474600 chr3A 706015788 706020425 4637 False 8565.000000 8565 100.000000 1 4638 1 chr3A.!!$F1 4637
1 TraesCS3A01G474600 chr3A 706333476 706337468 3992 False 1216.250000 3975 85.649750 82 4353 4 chr3A.!!$F7 4271
2 TraesCS3A01G474600 chr3A 705948561 705950807 2246 False 994.000000 1092 83.129500 1490 3753 2 chr3A.!!$F4 2263
3 TraesCS3A01G474600 chr3A 706257183 706259824 2641 False 873.500000 1447 84.591000 893 3640 2 chr3A.!!$F6 2747
4 TraesCS3A01G474600 chr3A 705368819 705369976 1157 True 843.000000 843 80.591000 1520 2653 1 chr3A.!!$R1 1133
5 TraesCS3A01G474600 chr3D 572487429 572490110 2681 True 1348.500000 2163 85.822500 941 3640 2 chr3D.!!$R2 2699
6 TraesCS3A01G474600 chr3D 572507005 572511403 4398 True 1327.500000 3819 88.485000 1 4318 4 chr3D.!!$R3 4317
7 TraesCS3A01G474600 chr3B 761367362 761371514 4152 False 2247.000000 3685 87.155000 1 4108 2 chr3B.!!$F7 4107
8 TraesCS3A01G474600 chr3B 761392554 761395166 2612 False 1178.000000 2104 83.216000 935 3640 2 chr3B.!!$F8 2705
9 TraesCS3A01G474600 chr3B 761195160 761196159 999 False 1018.000000 1018 85.262000 2644 3640 1 chr3B.!!$F1 996
10 TraesCS3A01G474600 chr3B 760491332 760492510 1178 True 843.000000 843 80.252000 1510 2653 1 chr3B.!!$R2 1143
11 TraesCS3A01G474600 chr3B 761003056 761005824 2768 False 703.666667 1201 81.867667 954 3753 3 chr3B.!!$F5 2799
12 TraesCS3A01G474600 chr3B 588646381 588646938 557 True 689.000000 689 89.539000 1441 1982 1 chr3B.!!$R1 541
13 TraesCS3A01G474600 chr3B 761060134 761061925 1791 False 378.500000 516 81.997500 1 1215 2 chr3B.!!$F6 1214
14 TraesCS3A01G474600 chrUn 132058440 132059724 1284 False 1070.000000 1070 82.034000 2391 3673 1 chrUn.!!$F2 1282
15 TraesCS3A01G474600 chr4B 566641032 566641640 608 True 771.000000 771 90.065000 1441 2032 1 chr4B.!!$R1 591
16 TraesCS3A01G474600 chr4B 635259841 635260398 557 True 706.000000 706 90.071000 1441 1982 1 chr4B.!!$R2 541
17 TraesCS3A01G474600 chr4B 649510968 649511525 557 False 678.000000 678 89.204000 1441 1982 1 chr4B.!!$F1 541
18 TraesCS3A01G474600 chr2B 785017857 785018414 557 False 695.000000 695 89.716000 1441 1982 1 chr2B.!!$F2 541
19 TraesCS3A01G474600 chr2B 76638547 76639103 556 False 682.000000 682 89.362000 1441 1982 1 chr2B.!!$F1 541
20 TraesCS3A01G474600 chr5B 325492860 325493417 557 False 689.000000 689 89.539000 1441 1982 1 chr5B.!!$F1 541
21 TraesCS3A01G474600 chr6B 508957088 508957645 557 True 684.000000 684 89.362000 1441 1982 1 chr6B.!!$R1 541
22 TraesCS3A01G474600 chr6B 647671717 647672274 557 False 684.000000 684 89.362000 1441 1982 1 chr6B.!!$F1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
619 680 0.182537 TGTGCCACACCTGTTTAGCT 59.817 50.000 0.00 0.0 32.73 3.32 F
924 1728 0.321741 TCTTCGACGTCTGCTCTCCT 60.322 55.000 14.70 0.0 0.00 3.69 F
1302 2214 1.067354 GGCACTTCCCTTGAATGCTTG 60.067 52.381 0.00 0.0 36.31 4.01 F
1378 2293 1.134280 CAGGCCTACATGAACCTCCAG 60.134 57.143 3.98 0.0 0.00 3.86 F
2071 3215 1.536922 CCTTGAGGATGATGACGACGG 60.537 57.143 0.00 0.0 37.39 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 3210 0.702924 CATCGTATTCATCGCCGTCG 59.297 55.000 0.0 0.0 0.00 5.12 R
2633 3835 2.897271 ATTGATACAAGGTGCCACCA 57.103 45.000 17.8 0.0 41.95 4.17 R
3131 4370 2.289257 GCCAAGCTTCTCCATTGCTTTT 60.289 45.455 0.0 0.0 43.47 2.27 R
3137 4376 2.519771 TCATGCCAAGCTTCTCCATT 57.480 45.000 0.0 0.0 0.00 3.16 R
3789 5045 1.212688 CACATTCTGGAGCCATACCCA 59.787 52.381 0.0 0.0 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.968493 GGCCTATATGTCCTCGGTTGA 59.032 52.381 0.00 0.00 0.00 3.18
78 79 8.073467 TCCAAAGGAACATACATATTTTTCCC 57.927 34.615 0.00 0.00 0.00 3.97
80 81 7.147983 CCAAAGGAACATACATATTTTTCCCGA 60.148 37.037 0.00 0.00 0.00 5.14
152 153 0.250338 GAGGAACCAGCAGAACCGTT 60.250 55.000 0.00 0.00 0.00 4.44
168 169 1.611673 CCGTTGATCCAAGCTTCCTGT 60.612 52.381 0.00 0.00 0.00 4.00
183 184 4.799586 GCTTCCTGTCTGTACTTTGTAGCA 60.800 45.833 0.00 0.00 0.00 3.49
212 216 6.322201 TCATCTTGTATGCTGATCTCACAGTA 59.678 38.462 0.00 0.00 39.73 2.74
213 217 5.895928 TCTTGTATGCTGATCTCACAGTAC 58.104 41.667 0.00 0.00 39.73 2.73
215 219 5.659440 TGTATGCTGATCTCACAGTACAA 57.341 39.130 0.00 0.00 39.73 2.41
218 222 4.335400 TGCTGATCTCACAGTACAACAA 57.665 40.909 0.00 0.00 39.73 2.83
324 331 5.818678 TGGTAAACACACCTCTGATAGTT 57.181 39.130 0.00 0.00 39.50 2.24
325 332 5.790593 TGGTAAACACACCTCTGATAGTTC 58.209 41.667 0.00 0.00 39.50 3.01
353 385 0.392998 CCCATCTTGCGGCTACAAGT 60.393 55.000 15.66 4.64 45.86 3.16
357 389 3.181510 CCATCTTGCGGCTACAAGTAAAC 60.182 47.826 15.66 0.00 45.86 2.01
387 428 2.854032 CCCGGCATCCATAGGGGT 60.854 66.667 0.00 0.00 40.18 4.95
402 443 1.599518 GGGTGCAACATGACGTCCA 60.600 57.895 14.12 1.26 39.98 4.02
521 562 2.148446 TCCAAATCTGGCTTGGATGG 57.852 50.000 2.07 0.00 45.88 3.51
578 637 7.732222 AGGGAAATATAAAATTCTTGCACCA 57.268 32.000 0.00 0.00 0.00 4.17
602 663 5.880901 AGTGATTCTGGGTTTTGTAGATGT 58.119 37.500 0.00 0.00 0.00 3.06
607 668 2.228822 CTGGGTTTTGTAGATGTGCCAC 59.771 50.000 0.00 0.00 0.00 5.01
619 680 0.182537 TGTGCCACACCTGTTTAGCT 59.817 50.000 0.00 0.00 32.73 3.32
709 805 4.505918 CCATGAAACTAGGTTACACCCACA 60.506 45.833 0.00 0.00 39.75 4.17
710 806 4.075963 TGAAACTAGGTTACACCCACAC 57.924 45.455 0.00 0.00 39.75 3.82
711 807 3.181452 TGAAACTAGGTTACACCCACACC 60.181 47.826 0.00 0.00 39.75 4.16
712 808 1.355112 ACTAGGTTACACCCACACCC 58.645 55.000 0.00 0.00 39.75 4.61
714 810 1.002773 CTAGGTTACACCCACACCCAC 59.997 57.143 0.00 0.00 39.75 4.61
715 811 0.696485 AGGTTACACCCACACCCACT 60.696 55.000 0.00 0.00 39.75 4.00
716 812 1.058284 GGTTACACCCACACCCACTA 58.942 55.000 0.00 0.00 30.04 2.74
717 813 1.420891 GGTTACACCCACACCCACTAA 59.579 52.381 0.00 0.00 30.04 2.24
718 814 2.158638 GGTTACACCCACACCCACTAAA 60.159 50.000 0.00 0.00 30.04 1.85
720 816 2.358322 ACACCCACACCCACTAAAAG 57.642 50.000 0.00 0.00 0.00 2.27
721 817 1.847737 ACACCCACACCCACTAAAAGA 59.152 47.619 0.00 0.00 0.00 2.52
761 861 5.981915 CCGTACTAAAAGAGGTACTATTGCC 59.018 44.000 0.00 0.00 39.88 4.52
786 928 2.257353 CCAAGACGGGCCAAGAAAG 58.743 57.895 4.39 0.00 0.00 2.62
825 1586 1.339631 CCCAAATTGCACGGTCTAGGA 60.340 52.381 0.00 0.00 0.00 2.94
867 1658 2.811317 GAGGGCACGAGTCAAGCG 60.811 66.667 0.00 0.00 0.00 4.68
868 1659 4.379243 AGGGCACGAGTCAAGCGG 62.379 66.667 0.00 0.00 0.00 5.52
872 1663 4.379243 CACGAGTCAAGCGGGGCT 62.379 66.667 0.00 0.00 42.56 5.19
873 1664 4.070552 ACGAGTCAAGCGGGGCTC 62.071 66.667 2.60 2.60 38.25 4.70
874 1665 4.821589 CGAGTCAAGCGGGGCTCC 62.822 72.222 0.00 0.00 38.25 4.70
875 1666 3.394836 GAGTCAAGCGGGGCTCCT 61.395 66.667 0.00 0.00 38.25 3.69
880 1673 2.936032 AAGCGGGGCTCCTCCTTT 60.936 61.111 0.00 0.00 38.25 3.11
882 1675 3.403558 GCGGGGCTCCTCCTTTCT 61.404 66.667 0.00 0.00 34.39 2.52
884 1677 1.222113 CGGGGCTCCTCCTTTCTTC 59.778 63.158 0.00 0.00 34.39 2.87
885 1678 1.268283 CGGGGCTCCTCCTTTCTTCT 61.268 60.000 0.00 0.00 34.39 2.85
887 1680 1.340502 GGGGCTCCTCCTTTCTTCTTG 60.341 57.143 0.00 0.00 34.39 3.02
890 1683 1.271597 GCTCCTCCTTTCTTCTTGCCA 60.272 52.381 0.00 0.00 0.00 4.92
911 1704 1.636570 CCGTCGCAGTCTCTCTTCGA 61.637 60.000 0.00 0.00 39.22 3.71
913 1706 1.788481 TCGCAGTCTCTCTTCGACG 59.212 57.895 0.00 0.00 36.96 5.12
924 1728 0.321741 TCTTCGACGTCTGCTCTCCT 60.322 55.000 14.70 0.00 0.00 3.69
1095 1954 1.299648 CCTCTCCGATTTGGTGCCA 59.700 57.895 0.00 0.00 39.52 4.92
1105 1964 3.609853 GATTTGGTGCCATGTCAGACTA 58.390 45.455 1.31 0.00 0.00 2.59
1108 1967 3.057969 TGGTGCCATGTCAGACTAAAG 57.942 47.619 1.31 0.00 0.00 1.85
1194 2053 2.398554 CCCTGGATTGGCGTGTTCG 61.399 63.158 0.00 0.00 40.37 3.95
1230 2116 4.062991 TGTTATAGCGCTAGATCTCGTCA 58.937 43.478 23.37 9.82 0.00 4.35
1299 2211 1.135721 GATGGCACTTCCCTTGAATGC 59.864 52.381 0.00 0.00 35.80 3.56
1302 2214 1.067354 GGCACTTCCCTTGAATGCTTG 60.067 52.381 0.00 0.00 36.31 4.01
1319 2233 4.101114 TGCTTGTCCTTTCTGGTATCCTA 58.899 43.478 0.00 0.00 37.07 2.94
1320 2234 4.534500 TGCTTGTCCTTTCTGGTATCCTAA 59.466 41.667 0.00 0.00 37.07 2.69
1323 2237 3.454812 TGTCCTTTCTGGTATCCTAAGGC 59.545 47.826 0.00 0.00 37.07 4.35
1365 2279 3.006728 CCGGTCAACCCAGGCCTA 61.007 66.667 3.98 0.00 0.00 3.93
1378 2293 1.134280 CAGGCCTACATGAACCTCCAG 60.134 57.143 3.98 0.00 0.00 3.86
1405 2361 3.084039 GGATTCATGCTCACTTGTCCAA 58.916 45.455 0.00 0.00 0.00 3.53
1460 2430 4.319177 TCTTTCTGCTCCTAACTTTGCTC 58.681 43.478 0.00 0.00 0.00 4.26
1468 2438 6.889198 TGCTCCTAACTTTGCTCTTACATAT 58.111 36.000 0.00 0.00 0.00 1.78
1469 2439 8.018537 TGCTCCTAACTTTGCTCTTACATATA 57.981 34.615 0.00 0.00 0.00 0.86
1470 2440 8.144478 TGCTCCTAACTTTGCTCTTACATATAG 58.856 37.037 0.00 0.00 0.00 1.31
1471 2441 8.145122 GCTCCTAACTTTGCTCTTACATATAGT 58.855 37.037 0.00 0.00 0.00 2.12
1516 2494 3.707611 TGCCGGTTGTCCTAGTTATGTAT 59.292 43.478 1.90 0.00 0.00 2.29
1639 2631 8.457261 GCATAGATAAATCATCCACCTTTGATC 58.543 37.037 0.00 0.00 33.75 2.92
1640 2632 9.736414 CATAGATAAATCATCCACCTTTGATCT 57.264 33.333 0.00 0.00 33.75 2.75
1722 2738 5.918608 AGCCTAAGTATCTTGTGTGTATGG 58.081 41.667 0.00 0.00 0.00 2.74
1867 2988 7.708752 AGTTTATCTTCTGCTGATGCTACTTAC 59.291 37.037 0.00 0.00 40.48 2.34
1877 2998 4.860072 TGATGCTACTTACTATGTGCTCG 58.140 43.478 0.00 0.00 0.00 5.03
1888 3009 4.635223 ACTATGTGCTCGCATATTCATGT 58.365 39.130 6.46 0.12 34.40 3.21
1997 3140 7.717875 AGTGCTGTTTGGTCTTTAATACTTACA 59.282 33.333 0.00 0.00 0.00 2.41
2000 3143 8.347035 GCTGTTTGGTCTTTAATACTTACAACA 58.653 33.333 0.00 0.00 0.00 3.33
2071 3215 1.536922 CCTTGAGGATGATGACGACGG 60.537 57.143 0.00 0.00 37.39 4.79
2112 3292 6.013898 TGAGGATGAGGATGAAATAGATGACC 60.014 42.308 0.00 0.00 0.00 4.02
2138 3318 8.685427 CATGATGTTGAGGGTATGTTCAAATTA 58.315 33.333 0.00 0.00 35.29 1.40
2187 3367 5.677319 AGCCACTTAGTTACAGATAAGCA 57.323 39.130 0.00 0.00 33.20 3.91
2228 3409 6.371548 TGCTGCCTTGTAAGTTCTAACATAAG 59.628 38.462 0.00 0.00 0.00 1.73
2519 3714 7.413000 CCGTTGTGGTCTATATTCTCAGTTTTG 60.413 40.741 0.00 0.00 0.00 2.44
2612 3814 5.185454 TGAGTACTTCCTGCCATTTGTATG 58.815 41.667 0.00 0.00 0.00 2.39
2912 4141 7.952671 AGACTTGATTACAGTCACAGTTTCTA 58.047 34.615 3.06 0.00 35.23 2.10
2977 4212 2.664568 CACTTGCCATTTTCAGCGATTG 59.335 45.455 0.00 0.00 0.00 2.67
2988 4223 7.113965 CCATTTTCAGCGATTGCAGATAATAAC 59.886 37.037 13.23 0.00 46.23 1.89
3019 4257 7.062749 AGTGAACTATGTCCAGTTGTAGAAA 57.937 36.000 0.00 0.00 38.86 2.52
3131 4370 3.168035 AGGAGTGAGAAGAAGAGCAGA 57.832 47.619 0.00 0.00 0.00 4.26
3137 4376 3.812053 GTGAGAAGAAGAGCAGAAAAGCA 59.188 43.478 0.00 0.00 36.85 3.91
3178 4417 2.708861 AGGTCATTACTGGTGTGAACCA 59.291 45.455 0.00 0.00 38.25 3.67
3339 4587 3.265221 TCCAAGCCAGATGTCTTCAAGAT 59.735 43.478 0.00 0.00 0.00 2.40
3416 4664 1.665916 GAGCTGCAGACACAAGCGA 60.666 57.895 20.43 0.00 0.00 4.93
3424 4672 0.598680 AGACACAAGCGACAGAGCAC 60.599 55.000 0.00 0.00 40.15 4.40
3789 5045 1.812571 GGAGCATGTTGTTTCGGATGT 59.187 47.619 0.00 0.00 0.00 3.06
3805 5061 1.490490 GATGTGGGTATGGCTCCAGAA 59.510 52.381 0.00 0.00 33.13 3.02
3806 5062 1.595311 TGTGGGTATGGCTCCAGAAT 58.405 50.000 0.00 0.00 33.13 2.40
3909 5166 6.097412 GCTCTTATGGGAAAATCTGAATTGGT 59.903 38.462 0.00 0.00 0.00 3.67
4063 5320 5.631026 CCACATGGATCGAAACAAGTTAAG 58.369 41.667 0.00 0.00 37.39 1.85
4066 5323 6.001460 ACATGGATCGAAACAAGTTAAGGAA 58.999 36.000 0.00 0.00 0.00 3.36
4071 5328 5.978934 TCGAAACAAGTTAAGGAAGACAC 57.021 39.130 0.00 0.00 0.00 3.67
4080 5337 8.895737 ACAAGTTAAGGAAGACACGAAAATAAA 58.104 29.630 0.00 0.00 0.00 1.40
4081 5338 9.893305 CAAGTTAAGGAAGACACGAAAATAAAT 57.107 29.630 0.00 0.00 0.00 1.40
4087 5346 4.965119 AGACACGAAAATAAATGGCCTC 57.035 40.909 3.32 0.00 0.00 4.70
4136 5420 6.656693 TCAATGAACAATTGGGTTTTGTTTGT 59.343 30.769 10.83 0.00 44.90 2.83
4138 5422 6.884280 TGAACAATTGGGTTTTGTTTGTTT 57.116 29.167 10.83 0.00 44.90 2.83
4155 5469 8.777865 TGTTTGTTTGGTTGTCAATTCATTTA 57.222 26.923 0.00 0.00 34.98 1.40
4171 5485 9.763465 CAATTCATTTATCTTGCCAATGTTTTC 57.237 29.630 0.00 0.00 31.08 2.29
4172 5486 7.903995 TTCATTTATCTTGCCAATGTTTTCC 57.096 32.000 0.00 0.00 31.08 3.13
4173 5487 7.002250 TCATTTATCTTGCCAATGTTTTCCA 57.998 32.000 0.00 0.00 31.08 3.53
4175 5489 6.418057 TTTATCTTGCCAATGTTTTCCACT 57.582 33.333 0.00 0.00 0.00 4.00
4198 5512 7.116233 CACTTATAGGTGACCAAAATTTGTTGC 59.884 37.037 9.29 0.00 39.34 4.17
4200 5514 2.428890 AGGTGACCAAAATTTGTTGCGA 59.571 40.909 3.63 0.00 0.00 5.10
4219 5533 2.039418 GAGGCAAAAACCCTTGGTCTT 58.961 47.619 0.00 0.00 33.12 3.01
4256 5570 7.016153 TCTTGGAGATACCTTTGCTTTTCTA 57.984 36.000 0.00 0.00 39.86 2.10
4259 5573 5.487488 TGGAGATACCTTTGCTTTTCTAGGA 59.513 40.000 0.00 0.00 39.86 2.94
4265 5579 6.089249 ACCTTTGCTTTTCTAGGACAAATG 57.911 37.500 0.00 0.00 30.52 2.32
4328 5646 7.500992 TGTGAGAAGAAAGAGTTGTAGATTGT 58.499 34.615 0.00 0.00 0.00 2.71
4330 5648 6.425114 TGAGAAGAAAGAGTTGTAGATTGTGC 59.575 38.462 0.00 0.00 0.00 4.57
4353 5676 2.086869 GTTGCCTGCTCATGTATGTGT 58.913 47.619 0.00 0.00 0.00 3.72
4354 5677 2.489329 GTTGCCTGCTCATGTATGTGTT 59.511 45.455 0.00 0.00 0.00 3.32
4355 5678 2.086094 TGCCTGCTCATGTATGTGTTG 58.914 47.619 0.00 0.00 0.00 3.33
4356 5679 1.402968 GCCTGCTCATGTATGTGTTGG 59.597 52.381 0.00 0.00 0.00 3.77
4357 5680 2.715046 CCTGCTCATGTATGTGTTGGT 58.285 47.619 0.00 0.00 0.00 3.67
4358 5681 3.084039 CCTGCTCATGTATGTGTTGGTT 58.916 45.455 0.00 0.00 0.00 3.67
4359 5682 4.260985 CCTGCTCATGTATGTGTTGGTTA 58.739 43.478 0.00 0.00 0.00 2.85
4360 5683 4.094887 CCTGCTCATGTATGTGTTGGTTAC 59.905 45.833 0.00 0.00 0.00 2.50
4361 5684 4.646572 TGCTCATGTATGTGTTGGTTACA 58.353 39.130 0.00 0.00 0.00 2.41
4362 5685 4.694982 TGCTCATGTATGTGTTGGTTACAG 59.305 41.667 0.00 0.00 37.45 2.74
4363 5686 4.094887 GCTCATGTATGTGTTGGTTACAGG 59.905 45.833 0.00 0.00 37.45 4.00
4364 5687 4.584874 TCATGTATGTGTTGGTTACAGGG 58.415 43.478 0.00 0.00 37.45 4.45
4365 5688 3.426787 TGTATGTGTTGGTTACAGGGG 57.573 47.619 0.00 0.00 37.45 4.79
4366 5689 2.040545 TGTATGTGTTGGTTACAGGGGG 59.959 50.000 0.00 0.00 37.45 5.40
4381 5704 4.329545 GGGGTCACGCTTCCTGCA 62.330 66.667 0.00 0.00 43.06 4.41
4382 5705 2.045926 GGGTCACGCTTCCTGCAT 60.046 61.111 0.00 0.00 43.06 3.96
4383 5706 2.401766 GGGTCACGCTTCCTGCATG 61.402 63.158 0.00 0.00 43.06 4.06
4384 5707 1.375908 GGTCACGCTTCCTGCATGA 60.376 57.895 0.00 0.00 41.91 3.07
4385 5708 1.364626 GGTCACGCTTCCTGCATGAG 61.365 60.000 0.00 0.00 44.90 2.90
4386 5709 1.742880 TCACGCTTCCTGCATGAGC 60.743 57.895 0.00 6.14 39.09 4.26
4389 5712 3.407657 GCTTCCTGCATGAGCGAG 58.592 61.111 0.00 0.00 46.23 5.03
4390 5713 2.821688 GCTTCCTGCATGAGCGAGC 61.822 63.158 0.00 0.00 46.23 5.03
4391 5714 2.510012 TTCCTGCATGAGCGAGCG 60.510 61.111 0.00 0.00 46.23 5.03
4396 5719 4.887987 GCATGAGCGAGCGCCTCT 62.888 66.667 11.66 0.00 43.17 3.69
4397 5720 2.657944 CATGAGCGAGCGCCTCTC 60.658 66.667 11.66 9.06 43.17 3.20
4398 5721 3.910490 ATGAGCGAGCGCCTCTCC 61.910 66.667 11.66 0.00 43.17 3.71
4403 5726 4.504916 CGAGCGCCTCTCCCTGTG 62.505 72.222 2.29 0.00 38.62 3.66
4404 5727 3.386237 GAGCGCCTCTCCCTGTGT 61.386 66.667 2.29 0.00 35.77 3.72
4405 5728 2.925170 AGCGCCTCTCCCTGTGTT 60.925 61.111 2.29 0.00 0.00 3.32
4406 5729 2.743928 GCGCCTCTCCCTGTGTTG 60.744 66.667 0.00 0.00 0.00 3.33
4407 5730 2.046892 CGCCTCTCCCTGTGTTGG 60.047 66.667 0.00 0.00 0.00 3.77
4416 5739 1.966762 CCTGTGTTGGGATGTTGGC 59.033 57.895 0.00 0.00 0.00 4.52
4417 5740 0.540365 CCTGTGTTGGGATGTTGGCT 60.540 55.000 0.00 0.00 0.00 4.75
4418 5741 1.331214 CTGTGTTGGGATGTTGGCTT 58.669 50.000 0.00 0.00 0.00 4.35
4419 5742 1.270550 CTGTGTTGGGATGTTGGCTTC 59.729 52.381 0.00 0.00 0.00 3.86
4420 5743 1.327303 GTGTTGGGATGTTGGCTTCA 58.673 50.000 0.00 0.00 0.00 3.02
4421 5744 1.270550 GTGTTGGGATGTTGGCTTCAG 59.729 52.381 0.00 0.00 0.00 3.02
4422 5745 0.890683 GTTGGGATGTTGGCTTCAGG 59.109 55.000 0.00 0.00 0.00 3.86
4423 5746 0.899717 TTGGGATGTTGGCTTCAGGC 60.900 55.000 0.00 0.00 41.50 4.85
4438 5761 2.671682 GGCCTTTTCGCCCTCTCT 59.328 61.111 0.00 0.00 43.66 3.10
4439 5762 1.746991 GGCCTTTTCGCCCTCTCTG 60.747 63.158 0.00 0.00 43.66 3.35
4440 5763 1.003233 GCCTTTTCGCCCTCTCTGT 60.003 57.895 0.00 0.00 0.00 3.41
4441 5764 1.021920 GCCTTTTCGCCCTCTCTGTC 61.022 60.000 0.00 0.00 0.00 3.51
4442 5765 0.391793 CCTTTTCGCCCTCTCTGTCC 60.392 60.000 0.00 0.00 0.00 4.02
4443 5766 0.610687 CTTTTCGCCCTCTCTGTCCT 59.389 55.000 0.00 0.00 0.00 3.85
4444 5767 1.002544 CTTTTCGCCCTCTCTGTCCTT 59.997 52.381 0.00 0.00 0.00 3.36
4445 5768 1.056660 TTTCGCCCTCTCTGTCCTTT 58.943 50.000 0.00 0.00 0.00 3.11
4446 5769 0.608640 TTCGCCCTCTCTGTCCTTTC 59.391 55.000 0.00 0.00 0.00 2.62
4447 5770 0.541998 TCGCCCTCTCTGTCCTTTCA 60.542 55.000 0.00 0.00 0.00 2.69
4448 5771 0.539051 CGCCCTCTCTGTCCTTTCAT 59.461 55.000 0.00 0.00 0.00 2.57
4449 5772 1.472376 CGCCCTCTCTGTCCTTTCATC 60.472 57.143 0.00 0.00 0.00 2.92
4450 5773 1.134250 GCCCTCTCTGTCCTTTCATCC 60.134 57.143 0.00 0.00 0.00 3.51
4451 5774 2.476199 CCCTCTCTGTCCTTTCATCCT 58.524 52.381 0.00 0.00 0.00 3.24
4452 5775 2.170187 CCCTCTCTGTCCTTTCATCCTG 59.830 54.545 0.00 0.00 0.00 3.86
4453 5776 2.419851 CCTCTCTGTCCTTTCATCCTGC 60.420 54.545 0.00 0.00 0.00 4.85
4454 5777 1.556911 TCTCTGTCCTTTCATCCTGCC 59.443 52.381 0.00 0.00 0.00 4.85
4455 5778 1.558756 CTCTGTCCTTTCATCCTGCCT 59.441 52.381 0.00 0.00 0.00 4.75
4456 5779 1.556911 TCTGTCCTTTCATCCTGCCTC 59.443 52.381 0.00 0.00 0.00 4.70
4457 5780 0.620556 TGTCCTTTCATCCTGCCTCC 59.379 55.000 0.00 0.00 0.00 4.30
4458 5781 0.620556 GTCCTTTCATCCTGCCTCCA 59.379 55.000 0.00 0.00 0.00 3.86
4459 5782 1.213926 GTCCTTTCATCCTGCCTCCAT 59.786 52.381 0.00 0.00 0.00 3.41
4460 5783 1.492176 TCCTTTCATCCTGCCTCCATC 59.508 52.381 0.00 0.00 0.00 3.51
4461 5784 1.590932 CTTTCATCCTGCCTCCATCG 58.409 55.000 0.00 0.00 0.00 3.84
4462 5785 0.181114 TTTCATCCTGCCTCCATCGG 59.819 55.000 0.00 0.00 0.00 4.18
4469 5792 2.202987 GCCTCCATCGGCTCAGTG 60.203 66.667 0.00 0.00 46.63 3.66
4470 5793 2.725312 GCCTCCATCGGCTCAGTGA 61.725 63.158 0.00 0.00 46.63 3.41
4471 5794 1.440893 CCTCCATCGGCTCAGTGAG 59.559 63.158 16.21 16.21 0.00 3.51
4482 5805 1.654317 CTCAGTGAGCTGGAATCTGC 58.346 55.000 7.33 0.00 42.78 4.26
4483 5806 0.108472 TCAGTGAGCTGGAATCTGCG 60.108 55.000 0.00 0.00 42.78 5.18
4484 5807 1.449246 AGTGAGCTGGAATCTGCGC 60.449 57.895 0.00 0.00 41.81 6.09
4485 5808 2.124983 TGAGCTGGAATCTGCGCC 60.125 61.111 4.18 0.00 41.81 6.53
4486 5809 2.899339 GAGCTGGAATCTGCGCCC 60.899 66.667 4.18 0.00 41.81 6.13
4487 5810 4.496336 AGCTGGAATCTGCGCCCC 62.496 66.667 4.18 0.00 41.81 5.80
4488 5811 4.496336 GCTGGAATCTGCGCCCCT 62.496 66.667 4.18 0.00 0.00 4.79
4489 5812 2.203126 CTGGAATCTGCGCCCCTC 60.203 66.667 4.18 0.00 0.00 4.30
4490 5813 2.688666 TGGAATCTGCGCCCCTCT 60.689 61.111 4.18 0.00 0.00 3.69
4491 5814 2.110006 GGAATCTGCGCCCCTCTC 59.890 66.667 4.18 0.00 0.00 3.20
4492 5815 2.279784 GAATCTGCGCCCCTCTCG 60.280 66.667 4.18 0.00 0.00 4.04
4493 5816 2.759973 AATCTGCGCCCCTCTCGA 60.760 61.111 4.18 0.00 0.00 4.04
4494 5817 2.962697 GAATCTGCGCCCCTCTCGAC 62.963 65.000 4.18 0.00 0.00 4.20
4500 5823 3.902086 GCCCCTCTCGACCGCTAC 61.902 72.222 0.00 0.00 0.00 3.58
4501 5824 2.124236 CCCCTCTCGACCGCTACT 60.124 66.667 0.00 0.00 0.00 2.57
4502 5825 2.482333 CCCCTCTCGACCGCTACTG 61.482 68.421 0.00 0.00 0.00 2.74
4503 5826 2.409651 CCTCTCGACCGCTACTGC 59.590 66.667 0.00 0.00 0.00 4.40
4504 5827 2.409651 CTCTCGACCGCTACTGCC 59.590 66.667 0.00 0.00 35.36 4.85
4505 5828 2.045242 TCTCGACCGCTACTGCCT 60.045 61.111 0.00 0.00 35.36 4.75
4506 5829 2.054140 CTCTCGACCGCTACTGCCTC 62.054 65.000 0.00 0.00 35.36 4.70
4507 5830 3.127352 CTCGACCGCTACTGCCTCC 62.127 68.421 0.00 0.00 35.36 4.30
4508 5831 3.449227 CGACCGCTACTGCCTCCA 61.449 66.667 0.00 0.00 35.36 3.86
4509 5832 2.496817 GACCGCTACTGCCTCCAG 59.503 66.667 0.00 0.00 44.80 3.86
4517 5840 2.985456 CTGCCTCCAGTCCTCCAC 59.015 66.667 0.00 0.00 34.31 4.02
4518 5841 2.607750 TGCCTCCAGTCCTCCACC 60.608 66.667 0.00 0.00 0.00 4.61
4519 5842 2.284995 GCCTCCAGTCCTCCACCT 60.285 66.667 0.00 0.00 0.00 4.00
4520 5843 2.363172 GCCTCCAGTCCTCCACCTC 61.363 68.421 0.00 0.00 0.00 3.85
4521 5844 1.079256 CCTCCAGTCCTCCACCTCA 59.921 63.158 0.00 0.00 0.00 3.86
4522 5845 1.261238 CCTCCAGTCCTCCACCTCAC 61.261 65.000 0.00 0.00 0.00 3.51
4523 5846 1.599606 CTCCAGTCCTCCACCTCACG 61.600 65.000 0.00 0.00 0.00 4.35
4524 5847 1.908793 CCAGTCCTCCACCTCACGT 60.909 63.158 0.00 0.00 0.00 4.49
4525 5848 1.290324 CAGTCCTCCACCTCACGTG 59.710 63.158 9.94 9.94 42.62 4.49
4526 5849 1.153061 AGTCCTCCACCTCACGTGA 59.847 57.895 18.88 18.88 46.20 4.35
4527 5850 0.896019 AGTCCTCCACCTCACGTGAG 60.896 60.000 33.87 33.87 46.20 3.51
4528 5851 0.894184 GTCCTCCACCTCACGTGAGA 60.894 60.000 40.21 23.06 46.20 3.27
4529 5852 0.894184 TCCTCCACCTCACGTGAGAC 60.894 60.000 40.21 0.00 46.20 3.36
4530 5853 1.587054 CTCCACCTCACGTGAGACC 59.413 63.158 40.21 0.00 46.20 3.85
4531 5854 1.152631 TCCACCTCACGTGAGACCA 60.153 57.895 40.21 21.23 46.20 4.02
4532 5855 1.006102 CCACCTCACGTGAGACCAC 60.006 63.158 40.21 0.00 46.20 4.16
4533 5856 1.006102 CACCTCACGTGAGACCACC 60.006 63.158 40.21 0.00 46.20 4.61
4534 5857 1.152525 ACCTCACGTGAGACCACCT 60.153 57.895 40.21 16.15 44.74 4.00
4535 5858 1.290324 CCTCACGTGAGACCACCTG 59.710 63.158 40.21 21.43 44.74 4.00
4536 5859 1.290324 CTCACGTGAGACCACCTGG 59.710 63.158 36.73 10.41 44.74 4.45
4537 5860 2.357517 CACGTGAGACCACCTGGC 60.358 66.667 10.90 0.00 40.12 4.85
4538 5861 3.991051 ACGTGAGACCACCTGGCG 61.991 66.667 0.00 0.00 40.12 5.69
4539 5862 3.991051 CGTGAGACCACCTGGCGT 61.991 66.667 0.00 0.00 40.12 5.68
4540 5863 2.426023 GTGAGACCACCTGGCGTT 59.574 61.111 0.00 0.00 39.32 4.84
4541 5864 1.961277 GTGAGACCACCTGGCGTTG 60.961 63.158 0.00 0.00 39.32 4.10
4542 5865 3.050275 GAGACCACCTGGCGTTGC 61.050 66.667 0.00 0.00 39.32 4.17
4560 5883 4.020617 CCAGAAGGGCCACAGCGA 62.021 66.667 6.18 0.00 41.24 4.93
4561 5884 2.270205 CAGAAGGGCCACAGCGAT 59.730 61.111 6.18 0.00 41.24 4.58
4562 5885 1.377725 CAGAAGGGCCACAGCGATT 60.378 57.895 6.18 0.00 41.24 3.34
4563 5886 0.962356 CAGAAGGGCCACAGCGATTT 60.962 55.000 6.18 0.00 41.24 2.17
4564 5887 0.678048 AGAAGGGCCACAGCGATTTC 60.678 55.000 6.18 0.00 41.24 2.17
4565 5888 1.982073 GAAGGGCCACAGCGATTTCG 61.982 60.000 6.18 0.00 41.24 3.46
4566 5889 3.508840 GGGCCACAGCGATTTCGG 61.509 66.667 4.39 0.00 41.24 4.30
4567 5890 4.179579 GGCCACAGCGATTTCGGC 62.180 66.667 0.00 0.00 41.24 5.54
4568 5891 3.430862 GCCACAGCGATTTCGGCA 61.431 61.111 1.75 0.00 42.50 5.69
4569 5892 2.976840 GCCACAGCGATTTCGGCAA 61.977 57.895 1.75 0.00 42.50 4.52
4570 5893 1.154225 CCACAGCGATTTCGGCAAC 60.154 57.895 1.75 0.00 40.23 4.17
4571 5894 1.577328 CCACAGCGATTTCGGCAACT 61.577 55.000 1.75 0.00 40.23 3.16
4572 5895 1.075542 CACAGCGATTTCGGCAACTA 58.924 50.000 1.75 0.00 40.23 2.24
4573 5896 1.463056 CACAGCGATTTCGGCAACTAA 59.537 47.619 1.75 0.00 40.23 2.24
4574 5897 2.095853 CACAGCGATTTCGGCAACTAAT 59.904 45.455 1.75 0.00 40.23 1.73
4575 5898 2.095853 ACAGCGATTTCGGCAACTAATG 59.904 45.455 1.75 0.00 40.23 1.90
4576 5899 2.351418 CAGCGATTTCGGCAACTAATGA 59.649 45.455 1.75 0.00 40.23 2.57
4577 5900 3.002656 CAGCGATTTCGGCAACTAATGAT 59.997 43.478 1.75 0.00 40.23 2.45
4578 5901 4.211164 CAGCGATTTCGGCAACTAATGATA 59.789 41.667 1.75 0.00 40.23 2.15
4579 5902 4.211374 AGCGATTTCGGCAACTAATGATAC 59.789 41.667 1.75 0.00 40.23 2.24
4580 5903 4.688063 CGATTTCGGCAACTAATGATACG 58.312 43.478 0.00 0.00 35.37 3.06
4581 5904 4.443063 CGATTTCGGCAACTAATGATACGA 59.557 41.667 0.00 0.00 35.37 3.43
4582 5905 5.609696 CGATTTCGGCAACTAATGATACGAC 60.610 44.000 0.00 0.00 33.21 4.34
4583 5906 2.723209 TCGGCAACTAATGATACGACG 58.277 47.619 0.00 0.00 0.00 5.12
4584 5907 1.784856 CGGCAACTAATGATACGACGG 59.215 52.381 0.00 0.00 0.00 4.79
4585 5908 2.132762 GGCAACTAATGATACGACGGG 58.867 52.381 0.00 0.00 0.00 5.28
4586 5909 1.525619 GCAACTAATGATACGACGGGC 59.474 52.381 0.00 0.00 0.00 6.13
4588 5911 0.313043 ACTAATGATACGACGGGCGG 59.687 55.000 8.66 0.00 46.49 6.13
4589 5912 0.388134 CTAATGATACGACGGGCGGG 60.388 60.000 8.66 0.00 46.49 6.13
4590 5913 2.424705 TAATGATACGACGGGCGGGC 62.425 60.000 8.66 0.00 46.49 6.13
4592 5915 4.944372 GATACGACGGGCGGGCTG 62.944 72.222 8.66 9.08 46.49 4.85
4605 5928 4.452733 GGCTGCGGCGAGGTACTT 62.453 66.667 12.98 0.00 39.81 2.24
4606 5929 2.434359 GCTGCGGCGAGGTACTTT 60.434 61.111 12.98 0.00 41.55 2.66
4607 5930 2.033194 GCTGCGGCGAGGTACTTTT 61.033 57.895 12.98 0.00 41.55 2.27
4608 5931 1.967597 GCTGCGGCGAGGTACTTTTC 61.968 60.000 12.98 0.00 41.55 2.29
4609 5932 1.359459 CTGCGGCGAGGTACTTTTCC 61.359 60.000 12.98 0.00 41.55 3.13
4610 5933 1.079336 GCGGCGAGGTACTTTTCCT 60.079 57.895 12.98 0.00 41.55 3.36
4611 5934 0.672711 GCGGCGAGGTACTTTTCCTT 60.673 55.000 12.98 0.00 41.55 3.36
4612 5935 1.076332 CGGCGAGGTACTTTTCCTTG 58.924 55.000 0.00 0.00 41.55 3.61
4616 5939 3.320673 CGAGGTACTTTTCCTTGCTCT 57.679 47.619 0.00 0.00 41.55 4.09
4617 5940 3.665190 CGAGGTACTTTTCCTTGCTCTT 58.335 45.455 0.00 0.00 41.55 2.85
4618 5941 3.433615 CGAGGTACTTTTCCTTGCTCTTG 59.566 47.826 0.00 0.00 41.55 3.02
4619 5942 4.642429 GAGGTACTTTTCCTTGCTCTTGA 58.358 43.478 0.00 0.00 41.55 3.02
4620 5943 4.646572 AGGTACTTTTCCTTGCTCTTGAG 58.353 43.478 0.00 0.00 27.25 3.02
4621 5944 4.348168 AGGTACTTTTCCTTGCTCTTGAGA 59.652 41.667 1.30 0.00 27.25 3.27
4622 5945 5.063880 GGTACTTTTCCTTGCTCTTGAGAA 58.936 41.667 1.30 0.00 0.00 2.87
4623 5946 5.049336 GGTACTTTTCCTTGCTCTTGAGAAC 60.049 44.000 1.30 0.00 0.00 3.01
4624 5947 4.786425 ACTTTTCCTTGCTCTTGAGAACT 58.214 39.130 1.30 0.00 0.00 3.01
4625 5948 5.930135 ACTTTTCCTTGCTCTTGAGAACTA 58.070 37.500 1.30 0.00 0.00 2.24
4626 5949 6.538263 ACTTTTCCTTGCTCTTGAGAACTAT 58.462 36.000 1.30 0.00 0.00 2.12
4627 5950 7.001073 ACTTTTCCTTGCTCTTGAGAACTATT 58.999 34.615 1.30 0.00 0.00 1.73
4628 5951 7.503902 ACTTTTCCTTGCTCTTGAGAACTATTT 59.496 33.333 1.30 0.00 0.00 1.40
4629 5952 7.823745 TTTCCTTGCTCTTGAGAACTATTTT 57.176 32.000 1.30 0.00 0.00 1.82
4630 5953 7.440523 TTCCTTGCTCTTGAGAACTATTTTC 57.559 36.000 1.30 0.00 0.00 2.29
4631 5954 5.940470 TCCTTGCTCTTGAGAACTATTTTCC 59.060 40.000 1.30 0.00 0.00 3.13
4632 5955 5.163814 CCTTGCTCTTGAGAACTATTTTCCG 60.164 44.000 1.30 0.00 0.00 4.30
4633 5956 4.894784 TGCTCTTGAGAACTATTTTCCGT 58.105 39.130 1.30 0.00 0.00 4.69
4634 5957 5.305585 TGCTCTTGAGAACTATTTTCCGTT 58.694 37.500 1.30 0.00 0.00 4.44
4635 5958 5.179368 TGCTCTTGAGAACTATTTTCCGTTG 59.821 40.000 1.30 0.00 0.00 4.10
4636 5959 5.408604 GCTCTTGAGAACTATTTTCCGTTGA 59.591 40.000 1.30 0.00 0.00 3.18
4637 5960 6.073222 GCTCTTGAGAACTATTTTCCGTTGAA 60.073 38.462 1.30 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.162320 ACTCATTGTCAACCGAGGACATAT 59.838 41.667 15.05 1.06 44.11 1.78
20 21 1.691976 ACTCATTGTCAACCGAGGACA 59.308 47.619 15.05 0.00 43.12 4.02
78 79 5.107220 GCTATTATGGAAAACACCCGTATCG 60.107 44.000 0.00 0.00 0.00 2.92
80 81 5.937111 AGCTATTATGGAAAACACCCGTAT 58.063 37.500 0.00 0.00 0.00 3.06
152 153 1.980765 ACAGACAGGAAGCTTGGATCA 59.019 47.619 2.10 0.00 0.00 2.92
168 169 6.701340 AGATGATGTTGCTACAAAGTACAGA 58.299 36.000 4.79 0.00 37.91 3.41
183 184 6.482641 GTGAGATCAGCATACAAGATGATGTT 59.517 38.462 0.00 0.00 43.98 2.71
212 216 5.722021 ACTTTGAGAAAAGTGGTTGTTGT 57.278 34.783 3.17 0.00 41.12 3.32
240 244 2.036604 GTGAGGTAGAAGATAGCTGGGC 59.963 54.545 0.00 0.00 0.00 5.36
298 302 7.231467 ACTATCAGAGGTGTGTTTACCAATTT 58.769 34.615 0.00 0.00 43.37 1.82
387 428 0.880441 CCAATGGACGTCATGTTGCA 59.120 50.000 18.91 5.07 35.99 4.08
419 460 5.279206 CGGAGCTTCAACTCATATATGGTCT 60.279 44.000 12.78 3.35 38.50 3.85
521 562 4.846779 TTTGAATGCAGAACTGGGTAAC 57.153 40.909 3.99 0.00 0.00 2.50
578 637 6.207417 CACATCTACAAAACCCAGAATCACTT 59.793 38.462 0.00 0.00 0.00 3.16
602 663 2.065899 AAAGCTAAACAGGTGTGGCA 57.934 45.000 0.68 0.00 0.00 4.92
627 688 1.372582 TGGCGCATTCTAAAGCTCAG 58.627 50.000 10.83 0.00 0.00 3.35
698 794 2.934886 TTAGTGGGTGTGGGTGTAAC 57.065 50.000 0.00 0.00 0.00 2.50
733 829 5.651387 AGTACCTCTTTTAGTACGGTTCC 57.349 43.478 0.00 0.00 42.92 3.62
738 834 6.567050 TGGCAATAGTACCTCTTTTAGTACG 58.433 40.000 0.00 0.00 42.92 3.67
739 835 7.779073 TCTGGCAATAGTACCTCTTTTAGTAC 58.221 38.462 0.00 0.00 39.31 2.73
740 836 7.966339 TCTGGCAATAGTACCTCTTTTAGTA 57.034 36.000 0.00 0.00 0.00 1.82
741 837 6.869206 TCTGGCAATAGTACCTCTTTTAGT 57.131 37.500 0.00 0.00 0.00 2.24
786 928 2.480555 CAGTTCGTTCATGCCCGC 59.519 61.111 0.00 0.00 0.00 6.13
825 1586 1.142262 GTCTGGTGGGTGTAAACTGGT 59.858 52.381 0.00 0.00 0.00 4.00
867 1658 0.995803 AAGAAGAAAGGAGGAGCCCC 59.004 55.000 0.00 0.00 37.37 5.80
868 1659 1.952839 GCAAGAAGAAAGGAGGAGCCC 60.953 57.143 0.00 0.00 37.37 5.19
869 1660 1.458398 GCAAGAAGAAAGGAGGAGCC 58.542 55.000 0.00 0.00 0.00 4.70
870 1661 1.271597 TGGCAAGAAGAAAGGAGGAGC 60.272 52.381 0.00 0.00 0.00 4.70
871 1662 2.709213 CTGGCAAGAAGAAAGGAGGAG 58.291 52.381 0.00 0.00 0.00 3.69
872 1663 1.271597 GCTGGCAAGAAGAAAGGAGGA 60.272 52.381 0.00 0.00 0.00 3.71
873 1664 1.172175 GCTGGCAAGAAGAAAGGAGG 58.828 55.000 0.00 0.00 0.00 4.30
874 1665 1.172175 GGCTGGCAAGAAGAAAGGAG 58.828 55.000 0.00 0.00 0.00 3.69
875 1666 0.606401 CGGCTGGCAAGAAGAAAGGA 60.606 55.000 1.08 0.00 0.00 3.36
880 1673 2.048222 CGACGGCTGGCAAGAAGA 60.048 61.111 0.00 0.00 0.00 2.87
882 1675 4.617520 TGCGACGGCTGGCAAGAA 62.618 61.111 0.00 0.00 40.82 2.52
890 1683 1.928706 GAAGAGAGACTGCGACGGCT 61.929 60.000 0.00 0.00 40.82 5.52
911 1704 2.347322 GGAGCAGGAGAGCAGACGT 61.347 63.158 0.00 0.00 36.85 4.34
913 1706 1.548357 TTGGGAGCAGGAGAGCAGAC 61.548 60.000 0.00 0.00 36.85 3.51
944 1751 5.611128 AAGTAAAACCCTAGCCTAGCTAC 57.389 43.478 0.00 0.00 40.44 3.58
1095 1954 5.105146 AGGCGAAGATTCTTTAGTCTGACAT 60.105 40.000 10.88 0.00 0.00 3.06
1105 1964 4.761739 TGAAATGTGAGGCGAAGATTCTTT 59.238 37.500 0.00 0.00 0.00 2.52
1108 1967 3.935203 TCTGAAATGTGAGGCGAAGATTC 59.065 43.478 0.00 0.00 0.00 2.52
1149 2008 6.332630 CGAACAAGCAAGAATGGGAAATATT 58.667 36.000 0.00 0.00 0.00 1.28
1150 2009 5.163519 CCGAACAAGCAAGAATGGGAAATAT 60.164 40.000 0.00 0.00 0.00 1.28
1151 2010 4.157656 CCGAACAAGCAAGAATGGGAAATA 59.842 41.667 0.00 0.00 0.00 1.40
1152 2011 3.056607 CCGAACAAGCAAGAATGGGAAAT 60.057 43.478 0.00 0.00 0.00 2.17
1159 2018 1.250840 GGGGCCGAACAAGCAAGAAT 61.251 55.000 0.00 0.00 0.00 2.40
1194 2053 1.616159 ATAACACCACCACAGCAACC 58.384 50.000 0.00 0.00 0.00 3.77
1230 2116 1.384989 CGACCTAGGCGACATGGACT 61.385 60.000 17.40 0.00 0.00 3.85
1299 2211 5.675538 CCTTAGGATACCAGAAAGGACAAG 58.324 45.833 0.00 0.00 41.22 3.16
1302 2214 3.712218 AGCCTTAGGATACCAGAAAGGAC 59.288 47.826 0.69 9.69 41.22 3.85
1319 2233 2.250924 CCCTTCACCATGAAAAGCCTT 58.749 47.619 0.00 0.00 35.73 4.35
1320 2234 1.928868 CCCTTCACCATGAAAAGCCT 58.071 50.000 0.00 0.00 35.73 4.58
1323 2237 1.067354 GCTGCCCTTCACCATGAAAAG 60.067 52.381 0.00 0.00 35.73 2.27
1349 2263 1.910580 ATGTAGGCCTGGGTTGACCG 61.911 60.000 17.99 0.00 44.64 4.79
1352 2266 1.004277 GTTCATGTAGGCCTGGGTTGA 59.996 52.381 17.99 10.39 0.00 3.18
1378 2293 1.134159 AGTGAGCATGAATCCCTCAGC 60.134 52.381 0.00 0.00 37.52 4.26
1405 2361 2.893489 GCCTGAAAATGAAACTCCCAGT 59.107 45.455 0.00 0.00 0.00 4.00
1469 2439 9.950680 CAAACAAATGAAGAAGTACAATGTACT 57.049 29.630 19.40 19.40 0.00 2.73
1470 2440 8.690840 GCAAACAAATGAAGAAGTACAATGTAC 58.309 33.333 15.22 15.22 0.00 2.90
1471 2441 7.865385 GGCAAACAAATGAAGAAGTACAATGTA 59.135 33.333 0.00 0.00 0.00 2.29
1472 2442 6.701400 GGCAAACAAATGAAGAAGTACAATGT 59.299 34.615 0.00 0.00 0.00 2.71
1516 2494 4.703897 CTCTGAAAGTGGACCACAAACTA 58.296 43.478 26.30 7.76 36.74 2.24
1558 2536 5.772825 AAGACAAAGCAGTAGCATTTCAA 57.227 34.783 0.00 0.00 45.49 2.69
1828 2939 7.451429 CAGAAGATAAACTGAAATGACACTCG 58.549 38.462 0.00 0.00 36.38 4.18
1867 2988 5.049886 ACAACATGAATATGCGAGCACATAG 60.050 40.000 0.00 0.00 37.85 2.23
2066 3210 0.702924 CATCGTATTCATCGCCGTCG 59.297 55.000 0.00 0.00 0.00 5.12
2071 3215 3.838120 TCCTCATCATCGTATTCATCGC 58.162 45.455 0.00 0.00 0.00 4.58
2112 3292 6.513806 TTTGAACATACCCTCAACATCATG 57.486 37.500 0.00 0.00 31.41 3.07
2138 3318 8.598041 ACTTGAACTGAATAGAAGGAACTACAT 58.402 33.333 0.00 0.00 38.49 2.29
2187 3367 7.445402 ACAAGGCAGCATTACGATAAGAAATAT 59.555 33.333 0.00 0.00 0.00 1.28
2228 3409 7.375053 TGGGCAATAACTTCAGATGTTTAAAC 58.625 34.615 11.54 11.54 0.00 2.01
2298 3479 6.761242 GCCCAATAGAAACAAAATAATCCACC 59.239 38.462 0.00 0.00 0.00 4.61
2299 3480 7.555965 AGCCCAATAGAAACAAAATAATCCAC 58.444 34.615 0.00 0.00 0.00 4.02
2436 3630 3.107642 AGTACAAACTGGTCGGTTCTG 57.892 47.619 0.00 0.89 33.57 3.02
2437 3631 3.118519 ACAAGTACAAACTGGTCGGTTCT 60.119 43.478 0.00 0.00 34.58 3.01
2519 3714 9.831737 GAATAAGTGCATATGATACAATTCCAC 57.168 33.333 6.97 1.66 0.00 4.02
2612 3814 8.988934 CCACCACAGTACATACATGAATATTAC 58.011 37.037 0.00 0.00 0.00 1.89
2633 3835 2.897271 ATTGATACAAGGTGCCACCA 57.103 45.000 17.80 0.00 41.95 4.17
2822 4042 4.997545 TTTGCCACTTAGGGTAAGGTAA 57.002 40.909 0.00 0.00 40.08 2.85
2977 4212 6.151144 AGTTCACTTTGTGGGTTATTATCTGC 59.849 38.462 0.00 0.00 33.87 4.26
2988 4223 3.750371 TGGACATAGTTCACTTTGTGGG 58.250 45.455 7.66 0.00 38.07 4.61
3019 4257 4.716794 TCAAAATTTGCAAAAGCCCAGAT 58.283 34.783 17.19 0.00 0.00 2.90
3131 4370 2.289257 GCCAAGCTTCTCCATTGCTTTT 60.289 45.455 0.00 0.00 43.47 2.27
3137 4376 2.519771 TCATGCCAAGCTTCTCCATT 57.480 45.000 0.00 0.00 0.00 3.16
3178 4417 7.148407 CGGTCTTGCTCTTTTTGATAGTTACAT 60.148 37.037 0.00 0.00 0.00 2.29
3339 4587 4.832823 TGACATAGGTTTCTGAGTGTGAGA 59.167 41.667 0.00 0.00 0.00 3.27
3416 4664 1.963338 GCGCCTTGAAGTGCTCTGT 60.963 57.895 0.00 0.00 40.17 3.41
3482 4730 2.035632 GACCTCCTCGTCATCTTGGAT 58.964 52.381 0.00 0.00 32.74 3.41
3789 5045 1.212688 CACATTCTGGAGCCATACCCA 59.787 52.381 0.00 0.00 0.00 4.51
3828 5085 4.019321 CCTCCAAAACCTACATCTCCAAGA 60.019 45.833 0.00 0.00 0.00 3.02
3829 5086 4.265073 CCTCCAAAACCTACATCTCCAAG 58.735 47.826 0.00 0.00 0.00 3.61
3830 5087 3.561313 GCCTCCAAAACCTACATCTCCAA 60.561 47.826 0.00 0.00 0.00 3.53
3909 5166 4.675671 CGTTTGTAGGAAAACTTGGCACAA 60.676 41.667 0.00 0.00 37.54 3.33
3923 5180 4.093408 CACAGAATGACATCCGTTTGTAGG 59.907 45.833 0.00 0.00 39.69 3.18
4063 5320 4.157840 AGGCCATTTATTTTCGTGTCTTCC 59.842 41.667 5.01 0.00 0.00 3.46
4066 5323 4.589908 AGAGGCCATTTATTTTCGTGTCT 58.410 39.130 5.01 0.00 0.00 3.41
4071 5328 6.507023 AGCATAAAGAGGCCATTTATTTTCG 58.493 36.000 18.45 11.32 31.94 3.46
4080 5337 2.381911 CCACAAGCATAAAGAGGCCAT 58.618 47.619 5.01 0.00 30.80 4.40
4081 5338 1.838112 CCACAAGCATAAAGAGGCCA 58.162 50.000 5.01 0.00 30.80 5.36
4087 5346 1.900237 GCTTCGCCACAAGCATAAAG 58.100 50.000 1.97 0.00 46.93 1.85
4109 5393 5.738909 ACAAAACCCAATTGTTCATTGACA 58.261 33.333 4.43 0.00 44.78 3.58
4136 5420 7.387397 GGCAAGATAAATGAATTGACAACCAAA 59.613 33.333 0.00 0.00 38.43 3.28
4138 5422 6.014755 TGGCAAGATAAATGAATTGACAACCA 60.015 34.615 0.00 0.00 37.72 3.67
4155 5469 4.961438 AAGTGGAAAACATTGGCAAGAT 57.039 36.364 5.96 0.00 0.00 2.40
4171 5485 7.227049 ACAAATTTTGGTCACCTATAAGTGG 57.773 36.000 13.42 0.00 35.10 4.00
4172 5486 7.116233 GCAACAAATTTTGGTCACCTATAAGTG 59.884 37.037 13.42 0.00 35.45 3.16
4173 5487 7.151976 GCAACAAATTTTGGTCACCTATAAGT 58.848 34.615 13.42 0.00 34.12 2.24
4175 5489 6.016192 TCGCAACAAATTTTGGTCACCTATAA 60.016 34.615 13.42 0.00 34.12 0.98
4198 5512 0.313987 GACCAAGGGTTTTTGCCTCG 59.686 55.000 0.00 0.00 35.25 4.63
4200 5514 2.174685 AAGACCAAGGGTTTTTGCCT 57.825 45.000 0.00 0.00 35.25 4.75
4219 5533 5.549742 ATCTCCAAGAATTTGCACCAAAA 57.450 34.783 0.00 0.00 36.90 2.44
4256 5570 6.971726 ATGCATATGAATCACATTTGTCCT 57.028 33.333 6.97 0.00 39.15 3.85
4296 5610 4.877282 ACTCTTTCTTCTCACAGCAGTAC 58.123 43.478 0.00 0.00 0.00 2.73
4330 5648 1.674441 CATACATGAGCAGGCAACCAG 59.326 52.381 0.00 0.00 37.17 4.00
4372 5695 2.821688 GCTCGCTCATGCAGGAAGC 61.822 63.158 7.68 7.68 45.96 3.86
4373 5696 2.523507 CGCTCGCTCATGCAGGAAG 61.524 63.158 1.37 0.00 39.64 3.46
4374 5697 2.510012 CGCTCGCTCATGCAGGAA 60.510 61.111 1.37 0.00 39.64 3.36
4379 5702 4.887987 AGAGGCGCTCGCTCATGC 62.888 66.667 7.64 0.00 41.60 4.06
4380 5703 2.657944 GAGAGGCGCTCGCTCATG 60.658 66.667 19.26 0.00 41.19 3.07
4381 5704 3.910490 GGAGAGGCGCTCGCTCAT 61.910 66.667 23.22 7.54 44.91 2.90
4386 5709 4.504916 CACAGGGAGAGGCGCTCG 62.505 72.222 12.17 1.26 44.91 5.03
4387 5710 2.948720 AACACAGGGAGAGGCGCTC 61.949 63.158 10.01 10.01 43.17 5.03
4388 5711 2.925170 AACACAGGGAGAGGCGCT 60.925 61.111 7.64 0.00 40.97 5.92
4389 5712 2.743928 CAACACAGGGAGAGGCGC 60.744 66.667 0.00 0.00 0.00 6.53
4390 5713 2.046892 CCAACACAGGGAGAGGCG 60.047 66.667 0.00 0.00 0.00 5.52
4398 5721 0.540365 AGCCAACATCCCAACACAGG 60.540 55.000 0.00 0.00 0.00 4.00
4399 5722 1.270550 GAAGCCAACATCCCAACACAG 59.729 52.381 0.00 0.00 0.00 3.66
4400 5723 1.327303 GAAGCCAACATCCCAACACA 58.673 50.000 0.00 0.00 0.00 3.72
4401 5724 1.270550 CTGAAGCCAACATCCCAACAC 59.729 52.381 0.00 0.00 0.00 3.32
4402 5725 1.619654 CTGAAGCCAACATCCCAACA 58.380 50.000 0.00 0.00 0.00 3.33
4403 5726 0.890683 CCTGAAGCCAACATCCCAAC 59.109 55.000 0.00 0.00 0.00 3.77
4404 5727 0.899717 GCCTGAAGCCAACATCCCAA 60.900 55.000 0.00 0.00 34.35 4.12
4405 5728 1.304381 GCCTGAAGCCAACATCCCA 60.304 57.895 0.00 0.00 34.35 4.37
4406 5729 3.608432 GCCTGAAGCCAACATCCC 58.392 61.111 0.00 0.00 34.35 3.85
4422 5745 1.003233 ACAGAGAGGGCGAAAAGGC 60.003 57.895 0.00 0.00 45.91 4.35
4423 5746 0.391793 GGACAGAGAGGGCGAAAAGG 60.392 60.000 0.00 0.00 0.00 3.11
4424 5747 0.610687 AGGACAGAGAGGGCGAAAAG 59.389 55.000 0.00 0.00 0.00 2.27
4425 5748 1.056660 AAGGACAGAGAGGGCGAAAA 58.943 50.000 0.00 0.00 0.00 2.29
4426 5749 1.002087 GAAAGGACAGAGAGGGCGAAA 59.998 52.381 0.00 0.00 0.00 3.46
4427 5750 0.608640 GAAAGGACAGAGAGGGCGAA 59.391 55.000 0.00 0.00 0.00 4.70
4428 5751 0.541998 TGAAAGGACAGAGAGGGCGA 60.542 55.000 0.00 0.00 0.00 5.54
4429 5752 0.539051 ATGAAAGGACAGAGAGGGCG 59.461 55.000 0.00 0.00 0.00 6.13
4430 5753 1.134250 GGATGAAAGGACAGAGAGGGC 60.134 57.143 0.00 0.00 0.00 5.19
4431 5754 2.170187 CAGGATGAAAGGACAGAGAGGG 59.830 54.545 0.00 0.00 39.69 4.30
4432 5755 2.419851 GCAGGATGAAAGGACAGAGAGG 60.420 54.545 0.00 0.00 39.69 3.69
4433 5756 2.419851 GGCAGGATGAAAGGACAGAGAG 60.420 54.545 0.00 0.00 39.69 3.20
4434 5757 1.556911 GGCAGGATGAAAGGACAGAGA 59.443 52.381 0.00 0.00 39.69 3.10
4435 5758 1.558756 AGGCAGGATGAAAGGACAGAG 59.441 52.381 0.00 0.00 39.69 3.35
4436 5759 1.556911 GAGGCAGGATGAAAGGACAGA 59.443 52.381 0.00 0.00 39.69 3.41
4437 5760 1.407989 GGAGGCAGGATGAAAGGACAG 60.408 57.143 0.00 0.00 39.69 3.51
4438 5761 0.620556 GGAGGCAGGATGAAAGGACA 59.379 55.000 0.00 0.00 39.69 4.02
4439 5762 0.620556 TGGAGGCAGGATGAAAGGAC 59.379 55.000 0.00 0.00 39.69 3.85
4440 5763 1.492176 GATGGAGGCAGGATGAAAGGA 59.508 52.381 0.00 0.00 39.69 3.36
4441 5764 1.813092 CGATGGAGGCAGGATGAAAGG 60.813 57.143 0.00 0.00 39.69 3.11
4442 5765 1.590932 CGATGGAGGCAGGATGAAAG 58.409 55.000 0.00 0.00 39.69 2.62
4443 5766 0.181114 CCGATGGAGGCAGGATGAAA 59.819 55.000 0.00 0.00 39.69 2.69
4444 5767 1.832219 CCGATGGAGGCAGGATGAA 59.168 57.895 0.00 0.00 39.69 2.57
4445 5768 3.554716 CCGATGGAGGCAGGATGA 58.445 61.111 0.00 0.00 39.69 2.92
4453 5776 1.440893 CTCACTGAGCCGATGGAGG 59.559 63.158 0.00 0.00 0.00 4.30
4465 5788 1.703438 GCGCAGATTCCAGCTCACTG 61.703 60.000 0.30 0.00 44.05 3.66
4466 5789 1.449246 GCGCAGATTCCAGCTCACT 60.449 57.895 0.30 0.00 0.00 3.41
4467 5790 2.467826 GGCGCAGATTCCAGCTCAC 61.468 63.158 10.83 0.00 0.00 3.51
4468 5791 2.124983 GGCGCAGATTCCAGCTCA 60.125 61.111 10.83 0.00 0.00 4.26
4469 5792 2.899339 GGGCGCAGATTCCAGCTC 60.899 66.667 10.83 0.00 0.00 4.09
4470 5793 4.496336 GGGGCGCAGATTCCAGCT 62.496 66.667 10.83 0.00 0.00 4.24
4471 5794 4.496336 AGGGGCGCAGATTCCAGC 62.496 66.667 10.83 0.00 0.00 4.85
4472 5795 2.203126 GAGGGGCGCAGATTCCAG 60.203 66.667 10.83 0.00 0.00 3.86
4473 5796 2.688666 AGAGGGGCGCAGATTCCA 60.689 61.111 10.83 0.00 0.00 3.53
4474 5797 2.110006 GAGAGGGGCGCAGATTCC 59.890 66.667 10.83 0.00 0.00 3.01
4475 5798 2.279784 CGAGAGGGGCGCAGATTC 60.280 66.667 10.83 0.48 0.00 2.52
4476 5799 2.759973 TCGAGAGGGGCGCAGATT 60.760 61.111 10.83 0.00 0.00 2.40
4477 5800 3.532155 GTCGAGAGGGGCGCAGAT 61.532 66.667 10.83 0.00 0.00 2.90
4483 5806 3.902086 GTAGCGGTCGAGAGGGGC 61.902 72.222 0.00 0.00 0.00 5.80
4484 5807 2.124236 AGTAGCGGTCGAGAGGGG 60.124 66.667 0.00 0.00 0.00 4.79
4485 5808 3.111939 CAGTAGCGGTCGAGAGGG 58.888 66.667 0.00 0.00 0.00 4.30
4486 5809 2.409651 GCAGTAGCGGTCGAGAGG 59.590 66.667 0.00 0.00 0.00 3.69
4487 5810 2.054140 GAGGCAGTAGCGGTCGAGAG 62.054 65.000 0.00 0.00 43.41 3.20
4488 5811 2.045242 AGGCAGTAGCGGTCGAGA 60.045 61.111 0.00 0.00 43.41 4.04
4489 5812 2.409651 GAGGCAGTAGCGGTCGAG 59.590 66.667 0.00 0.00 43.41 4.04
4490 5813 3.138798 GGAGGCAGTAGCGGTCGA 61.139 66.667 0.00 0.00 43.41 4.20
4491 5814 3.417275 CTGGAGGCAGTAGCGGTCG 62.417 68.421 0.00 0.00 43.41 4.79
4492 5815 2.286127 GACTGGAGGCAGTAGCGGTC 62.286 65.000 0.00 0.00 43.41 4.79
4493 5816 2.283966 ACTGGAGGCAGTAGCGGT 60.284 61.111 0.00 0.00 43.41 5.68
4494 5817 2.496817 GACTGGAGGCAGTAGCGG 59.503 66.667 0.00 0.00 43.41 5.52
4495 5818 2.010582 GAGGACTGGAGGCAGTAGCG 62.011 65.000 0.00 0.00 43.41 4.26
4496 5819 1.681486 GGAGGACTGGAGGCAGTAGC 61.681 65.000 0.00 0.00 35.23 3.58
4497 5820 0.324738 TGGAGGACTGGAGGCAGTAG 60.325 60.000 0.00 0.00 35.23 2.57
4498 5821 0.614979 GTGGAGGACTGGAGGCAGTA 60.615 60.000 0.00 0.00 35.23 2.74
4499 5822 1.915769 GTGGAGGACTGGAGGCAGT 60.916 63.158 0.00 0.00 38.26 4.40
4500 5823 2.664081 GGTGGAGGACTGGAGGCAG 61.664 68.421 0.00 0.00 0.00 4.85
4501 5824 2.607750 GGTGGAGGACTGGAGGCA 60.608 66.667 0.00 0.00 0.00 4.75
4502 5825 2.284995 AGGTGGAGGACTGGAGGC 60.285 66.667 0.00 0.00 0.00 4.70
4503 5826 1.079256 TGAGGTGGAGGACTGGAGG 59.921 63.158 0.00 0.00 0.00 4.30
4504 5827 1.599606 CGTGAGGTGGAGGACTGGAG 61.600 65.000 0.00 0.00 0.00 3.86
4505 5828 1.606601 CGTGAGGTGGAGGACTGGA 60.607 63.158 0.00 0.00 0.00 3.86
4506 5829 1.908793 ACGTGAGGTGGAGGACTGG 60.909 63.158 0.00 0.00 0.00 4.00
4507 5830 1.179174 TCACGTGAGGTGGAGGACTG 61.179 60.000 15.76 0.00 46.96 3.51
4508 5831 0.896019 CTCACGTGAGGTGGAGGACT 60.896 60.000 33.36 0.00 46.96 3.85
4509 5832 0.894184 TCTCACGTGAGGTGGAGGAC 60.894 60.000 37.82 0.00 46.96 3.85
4510 5833 0.894184 GTCTCACGTGAGGTGGAGGA 60.894 60.000 37.82 19.46 46.96 3.71
4511 5834 1.587054 GTCTCACGTGAGGTGGAGG 59.413 63.158 37.82 17.54 46.96 4.30
4512 5835 1.179174 TGGTCTCACGTGAGGTGGAG 61.179 60.000 37.82 18.23 46.96 3.86
4513 5836 1.152631 TGGTCTCACGTGAGGTGGA 60.153 57.895 37.82 21.20 46.96 4.02
4514 5837 1.006102 GTGGTCTCACGTGAGGTGG 60.006 63.158 37.82 19.29 46.96 4.61
4516 5839 1.152525 AGGTGGTCTCACGTGAGGT 60.153 57.895 37.82 17.49 44.50 3.85
4517 5840 3.778955 AGGTGGTCTCACGTGAGG 58.221 61.111 37.82 22.94 44.50 3.86
4521 5844 3.991051 CGCCAGGTGGTCTCACGT 61.991 66.667 0.00 0.00 44.50 4.49
4522 5845 3.515316 AACGCCAGGTGGTCTCACG 62.515 63.158 4.64 0.00 44.50 4.35
4523 5846 1.961277 CAACGCCAGGTGGTCTCAC 60.961 63.158 4.64 0.00 42.91 3.51
4524 5847 2.425592 CAACGCCAGGTGGTCTCA 59.574 61.111 4.64 0.00 37.57 3.27
4525 5848 3.050275 GCAACGCCAGGTGGTCTC 61.050 66.667 4.64 0.00 35.09 3.36
4543 5866 2.826777 AATCGCTGTGGCCCTTCTGG 62.827 60.000 0.00 0.00 34.44 3.86
4544 5867 0.962356 AAATCGCTGTGGCCCTTCTG 60.962 55.000 0.00 0.00 34.44 3.02
4545 5868 0.678048 GAAATCGCTGTGGCCCTTCT 60.678 55.000 0.00 0.00 34.44 2.85
4546 5869 1.803289 GAAATCGCTGTGGCCCTTC 59.197 57.895 0.00 0.00 34.44 3.46
4547 5870 2.040544 CGAAATCGCTGTGGCCCTT 61.041 57.895 0.00 0.00 34.44 3.95
4548 5871 2.436646 CGAAATCGCTGTGGCCCT 60.437 61.111 0.00 0.00 34.44 5.19
4549 5872 3.508840 CCGAAATCGCTGTGGCCC 61.509 66.667 0.00 0.00 38.18 5.80
4550 5873 4.179579 GCCGAAATCGCTGTGGCC 62.180 66.667 0.00 0.00 39.83 5.36
4551 5874 2.976840 TTGCCGAAATCGCTGTGGC 61.977 57.895 0.00 0.00 45.91 5.01
4552 5875 1.154225 GTTGCCGAAATCGCTGTGG 60.154 57.895 0.00 0.00 38.18 4.17
4553 5876 1.075542 TAGTTGCCGAAATCGCTGTG 58.924 50.000 0.00 0.00 38.18 3.66
4554 5877 1.803334 TTAGTTGCCGAAATCGCTGT 58.197 45.000 0.00 0.00 38.18 4.40
4555 5878 2.351418 TCATTAGTTGCCGAAATCGCTG 59.649 45.455 0.00 0.00 38.18 5.18
4556 5879 2.627945 TCATTAGTTGCCGAAATCGCT 58.372 42.857 0.00 0.00 38.18 4.93
4557 5880 3.609103 ATCATTAGTTGCCGAAATCGC 57.391 42.857 0.00 0.00 38.18 4.58
4558 5881 4.443063 TCGTATCATTAGTTGCCGAAATCG 59.557 41.667 0.00 0.00 39.44 3.34
4559 5882 5.609696 CGTCGTATCATTAGTTGCCGAAATC 60.610 44.000 0.00 0.00 0.00 2.17
4560 5883 4.208460 CGTCGTATCATTAGTTGCCGAAAT 59.792 41.667 0.00 0.00 0.00 2.17
4561 5884 3.548668 CGTCGTATCATTAGTTGCCGAAA 59.451 43.478 0.00 0.00 0.00 3.46
4562 5885 3.110358 CGTCGTATCATTAGTTGCCGAA 58.890 45.455 0.00 0.00 0.00 4.30
4563 5886 2.542205 CCGTCGTATCATTAGTTGCCGA 60.542 50.000 0.00 0.00 0.00 5.54
4564 5887 1.784856 CCGTCGTATCATTAGTTGCCG 59.215 52.381 0.00 0.00 0.00 5.69
4565 5888 2.132762 CCCGTCGTATCATTAGTTGCC 58.867 52.381 0.00 0.00 0.00 4.52
4566 5889 1.525619 GCCCGTCGTATCATTAGTTGC 59.474 52.381 0.00 0.00 0.00 4.17
4567 5890 1.784856 CGCCCGTCGTATCATTAGTTG 59.215 52.381 0.00 0.00 0.00 3.16
4568 5891 1.269413 CCGCCCGTCGTATCATTAGTT 60.269 52.381 0.00 0.00 36.19 2.24
4569 5892 0.313043 CCGCCCGTCGTATCATTAGT 59.687 55.000 0.00 0.00 36.19 2.24
4570 5893 0.388134 CCCGCCCGTCGTATCATTAG 60.388 60.000 0.00 0.00 36.19 1.73
4571 5894 1.661480 CCCGCCCGTCGTATCATTA 59.339 57.895 0.00 0.00 36.19 1.90
4572 5895 2.420043 CCCGCCCGTCGTATCATT 59.580 61.111 0.00 0.00 36.19 2.57
4573 5896 4.295119 GCCCGCCCGTCGTATCAT 62.295 66.667 0.00 0.00 36.19 2.45
4575 5898 4.944372 CAGCCCGCCCGTCGTATC 62.944 72.222 0.00 0.00 36.19 2.24
4588 5911 3.952628 AAAGTACCTCGCCGCAGCC 62.953 63.158 0.00 0.00 34.57 4.85
4589 5912 1.967597 GAAAAGTACCTCGCCGCAGC 61.968 60.000 0.00 0.00 0.00 5.25
4590 5913 1.359459 GGAAAAGTACCTCGCCGCAG 61.359 60.000 0.00 0.00 0.00 5.18
4591 5914 1.375013 GGAAAAGTACCTCGCCGCA 60.375 57.895 0.00 0.00 0.00 5.69
4592 5915 0.672711 AAGGAAAAGTACCTCGCCGC 60.673 55.000 0.00 0.00 36.67 6.53
4593 5916 1.076332 CAAGGAAAAGTACCTCGCCG 58.924 55.000 0.00 0.00 36.67 6.46
4594 5917 0.803117 GCAAGGAAAAGTACCTCGCC 59.197 55.000 0.00 0.00 36.67 5.54
4595 5918 1.732809 GAGCAAGGAAAAGTACCTCGC 59.267 52.381 0.00 0.00 37.68 5.03
4596 5919 3.320673 AGAGCAAGGAAAAGTACCTCG 57.679 47.619 0.00 0.00 36.67 4.63
4597 5920 4.642429 TCAAGAGCAAGGAAAAGTACCTC 58.358 43.478 0.00 0.00 36.67 3.85
4598 5921 4.348168 TCTCAAGAGCAAGGAAAAGTACCT 59.652 41.667 0.00 0.00 39.69 3.08
4599 5922 4.642429 TCTCAAGAGCAAGGAAAAGTACC 58.358 43.478 0.00 0.00 0.00 3.34
4600 5923 5.760743 AGTTCTCAAGAGCAAGGAAAAGTAC 59.239 40.000 0.00 0.00 0.00 2.73
4601 5924 5.930135 AGTTCTCAAGAGCAAGGAAAAGTA 58.070 37.500 0.00 0.00 0.00 2.24
4602 5925 4.786425 AGTTCTCAAGAGCAAGGAAAAGT 58.214 39.130 0.00 0.00 0.00 2.66
4603 5926 7.446001 AATAGTTCTCAAGAGCAAGGAAAAG 57.554 36.000 0.00 0.00 0.00 2.27
4604 5927 7.823745 AAATAGTTCTCAAGAGCAAGGAAAA 57.176 32.000 0.00 0.00 0.00 2.29
4605 5928 7.040409 GGAAAATAGTTCTCAAGAGCAAGGAAA 60.040 37.037 0.00 0.00 0.00 3.13
4606 5929 6.431234 GGAAAATAGTTCTCAAGAGCAAGGAA 59.569 38.462 0.00 0.00 0.00 3.36
4607 5930 5.940470 GGAAAATAGTTCTCAAGAGCAAGGA 59.060 40.000 0.00 0.00 0.00 3.36
4608 5931 5.163814 CGGAAAATAGTTCTCAAGAGCAAGG 60.164 44.000 0.00 0.00 0.00 3.61
4609 5932 5.409826 ACGGAAAATAGTTCTCAAGAGCAAG 59.590 40.000 0.00 0.00 0.00 4.01
4610 5933 5.305585 ACGGAAAATAGTTCTCAAGAGCAA 58.694 37.500 0.00 0.00 0.00 3.91
4611 5934 4.894784 ACGGAAAATAGTTCTCAAGAGCA 58.105 39.130 0.00 0.00 0.00 4.26
4612 5935 5.408604 TCAACGGAAAATAGTTCTCAAGAGC 59.591 40.000 0.00 0.00 0.00 4.09
4613 5936 7.421530 TTCAACGGAAAATAGTTCTCAAGAG 57.578 36.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.