Multiple sequence alignment - TraesCS3A01G474100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G474100 chr3A 100.000 2942 0 0 1 2942 705272077 705269136 0.000000e+00 5433
1 TraesCS3A01G474100 chr3A 97.942 583 12 0 402 984 705270110 705269528 0.000000e+00 1011
2 TraesCS3A01G474100 chr3A 97.942 583 12 0 1968 2550 705271676 705271094 0.000000e+00 1011
3 TraesCS3A01G474100 chr3A 87.708 301 37 0 101 401 705290665 705290365 4.670000e-93 351
4 TraesCS3A01G474100 chr7A 97.437 2146 51 3 402 2546 94376327 94374185 0.000000e+00 3655
5 TraesCS3A01G474100 chr7A 97.770 583 13 0 402 984 94374763 94374181 0.000000e+00 1005
6 TraesCS3A01G474100 chr7A 96.741 583 16 2 1968 2550 94376327 94375748 0.000000e+00 968
7 TraesCS3A01G474100 chr6A 97.260 2153 53 3 402 2550 4663770 4665920 0.000000e+00 3644
8 TraesCS3A01G474100 chr6A 97.778 585 11 1 402 986 4665340 4665922 0.000000e+00 1007
9 TraesCS3A01G474100 chr6A 97.432 584 15 0 1967 2550 4663769 4664352 0.000000e+00 996
10 TraesCS3A01G474100 chr6D 96.238 2153 79 2 401 2551 208630989 208628837 0.000000e+00 3526
11 TraesCS3A01G474100 chr6D 96.747 584 18 1 402 984 208629421 208628838 0.000000e+00 972
12 TraesCS3A01G474100 chr6D 95.883 583 24 0 1968 2550 208630988 208630406 0.000000e+00 944
13 TraesCS3A01G474100 chr3B 92.701 1370 78 17 1189 2550 28279356 28278001 0.000000e+00 1956
14 TraesCS3A01G474100 chr3B 90.256 585 41 14 405 985 28278572 28278000 0.000000e+00 750
15 TraesCS3A01G474100 chr3B 95.178 394 19 0 8 401 760415114 760414721 8.950000e-175 623
16 TraesCS3A01G474100 chr3B 86.650 397 45 5 8 401 760434961 760434570 1.620000e-117 433
17 TraesCS3A01G474100 chr3B 78.075 374 64 12 22 392 759805293 759804935 1.370000e-53 220
18 TraesCS3A01G474100 chrUn 95.900 1122 39 7 872 1988 205544743 205545862 0.000000e+00 1810
19 TraesCS3A01G474100 chrUn 95.900 1122 39 7 872 1988 205552793 205553912 0.000000e+00 1810
20 TraesCS3A01G474100 chrUn 95.811 1122 40 7 872 1988 205549573 205550692 0.000000e+00 1805
21 TraesCS3A01G474100 chrUn 95.722 1122 41 7 872 1988 205559287 205560406 0.000000e+00 1799
22 TraesCS3A01G474100 chrUn 93.017 401 26 1 1 401 132217909 132218307 4.230000e-163 584
23 TraesCS3A01G474100 chrUn 86.667 195 18 3 2548 2741 132218300 132218487 2.970000e-50 209
24 TraesCS3A01G474100 chr3D 95.900 1122 39 6 872 1988 557592242 557591123 0.000000e+00 1810
25 TraesCS3A01G474100 chr3D 88.511 853 70 19 1717 2553 557265860 557266700 0.000000e+00 1007
26 TraesCS3A01G474100 chr3D 91.946 596 35 12 402 991 557266116 557266704 0.000000e+00 822


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G474100 chr3A 705269136 705272077 2941 True 2485.000000 5433 98.628000 1 2942 3 chr3A.!!$R2 2941
1 TraesCS3A01G474100 chr7A 94374181 94376327 2146 True 1876.000000 3655 97.316000 402 2550 3 chr7A.!!$R1 2148
2 TraesCS3A01G474100 chr6A 4663769 4665922 2153 False 1882.333333 3644 97.490000 402 2550 3 chr6A.!!$F1 2148
3 TraesCS3A01G474100 chr6D 208628837 208630989 2152 True 1814.000000 3526 96.289333 401 2551 3 chr6D.!!$R1 2150
4 TraesCS3A01G474100 chr3B 28278000 28279356 1356 True 1353.000000 1956 91.478500 405 2550 2 chr3B.!!$R4 2145
5 TraesCS3A01G474100 chrUn 205544743 205553912 9169 False 1808.333333 1810 95.870333 872 1988 3 chrUn.!!$F3 1116
6 TraesCS3A01G474100 chrUn 205559287 205560406 1119 False 1799.000000 1799 95.722000 872 1988 1 chrUn.!!$F1 1116
7 TraesCS3A01G474100 chrUn 132217909 132218487 578 False 396.500000 584 89.842000 1 2741 2 chrUn.!!$F2 2740
8 TraesCS3A01G474100 chr3D 557591123 557592242 1119 True 1810.000000 1810 95.900000 872 1988 1 chr3D.!!$R1 1116
9 TraesCS3A01G474100 chr3D 557265860 557266704 844 False 914.500000 1007 90.228500 402 2553 2 chr3D.!!$F1 2151

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.033503 TGGTAGTGAGAGGCATCGGA 60.034 55.0 0.0 0.0 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2220 6243 1.412079 TGCCACAACTGATTTTGCCT 58.588 45.0 0.0 0.0 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.390027 CCTTTGTATCAGGGTCCTCTTATATG 58.610 42.308 0.00 0.00 0.00 1.78
54 55 6.547880 TCCTCTTATATGAAGGACACACTCTC 59.452 42.308 0.00 0.00 0.00 3.20
55 56 6.549364 CCTCTTATATGAAGGACACACTCTCT 59.451 42.308 0.00 0.00 0.00 3.10
113 114 5.151454 AGTAGCTTGTGCCTATCCTTATCT 58.849 41.667 0.00 0.00 40.80 1.98
149 150 9.439500 GAGTACTACCCACAAATTAATGTAACA 57.561 33.333 0.00 0.00 30.84 2.41
151 152 7.136289 ACTACCCACAAATTAATGTAACACG 57.864 36.000 0.00 0.00 30.84 4.49
152 153 6.935771 ACTACCCACAAATTAATGTAACACGA 59.064 34.615 0.00 0.00 30.84 4.35
153 154 6.636562 ACCCACAAATTAATGTAACACGAA 57.363 33.333 0.00 0.00 30.84 3.85
154 155 7.222000 ACCCACAAATTAATGTAACACGAAT 57.778 32.000 0.00 0.00 30.84 3.34
155 156 7.087639 ACCCACAAATTAATGTAACACGAATG 58.912 34.615 0.00 0.00 30.84 2.67
157 158 7.309177 CCACAAATTAATGTAACACGAATGGA 58.691 34.615 0.00 0.00 30.84 3.41
158 159 7.484641 CCACAAATTAATGTAACACGAATGGAG 59.515 37.037 0.00 0.00 30.84 3.86
159 160 8.020819 CACAAATTAATGTAACACGAATGGAGT 58.979 33.333 0.00 0.00 30.84 3.85
161 162 6.583912 ATTAATGTAACACGAATGGAGTCG 57.416 37.500 0.00 0.00 46.54 4.18
162 163 3.861276 ATGTAACACGAATGGAGTCGA 57.139 42.857 3.17 0.00 43.86 4.20
164 165 2.815503 TGTAACACGAATGGAGTCGAGA 59.184 45.455 3.17 0.00 43.86 4.04
165 166 2.349297 AACACGAATGGAGTCGAGAC 57.651 50.000 3.17 0.00 43.86 3.36
166 167 1.535833 ACACGAATGGAGTCGAGACT 58.464 50.000 5.31 5.31 43.86 3.24
167 168 1.887198 ACACGAATGGAGTCGAGACTT 59.113 47.619 7.23 0.00 43.86 3.01
168 169 2.254459 CACGAATGGAGTCGAGACTTG 58.746 52.381 7.23 0.00 43.86 3.16
169 170 1.202582 ACGAATGGAGTCGAGACTTGG 59.797 52.381 7.23 0.00 43.86 3.61
171 172 1.825474 GAATGGAGTCGAGACTTGGGA 59.175 52.381 7.23 0.00 42.66 4.37
172 173 1.938585 ATGGAGTCGAGACTTGGGAA 58.061 50.000 7.23 0.00 42.66 3.97
173 174 1.712056 TGGAGTCGAGACTTGGGAAA 58.288 50.000 7.23 0.00 42.66 3.13
176 177 2.233922 GGAGTCGAGACTTGGGAAATGA 59.766 50.000 7.23 0.00 42.66 2.57
177 178 3.306780 GGAGTCGAGACTTGGGAAATGAA 60.307 47.826 7.23 0.00 42.66 2.57
178 179 4.315803 GAGTCGAGACTTGGGAAATGAAA 58.684 43.478 7.23 0.00 42.66 2.69
179 180 4.319177 AGTCGAGACTTGGGAAATGAAAG 58.681 43.478 0.00 0.00 38.83 2.62
180 181 4.040461 AGTCGAGACTTGGGAAATGAAAGA 59.960 41.667 0.00 0.00 38.83 2.52
181 182 4.938226 GTCGAGACTTGGGAAATGAAAGAT 59.062 41.667 0.00 0.00 0.00 2.40
182 183 6.070767 AGTCGAGACTTGGGAAATGAAAGATA 60.071 38.462 0.00 0.00 38.83 1.98
183 184 6.594159 GTCGAGACTTGGGAAATGAAAGATAA 59.406 38.462 0.00 0.00 0.00 1.75
184 185 7.119262 GTCGAGACTTGGGAAATGAAAGATAAA 59.881 37.037 0.00 0.00 0.00 1.40
185 186 7.663905 TCGAGACTTGGGAAATGAAAGATAAAA 59.336 33.333 0.00 0.00 0.00 1.52
186 187 8.462016 CGAGACTTGGGAAATGAAAGATAAAAT 58.538 33.333 0.00 0.00 0.00 1.82
187 188 9.578439 GAGACTTGGGAAATGAAAGATAAAATG 57.422 33.333 0.00 0.00 0.00 2.32
188 189 9.312904 AGACTTGGGAAATGAAAGATAAAATGA 57.687 29.630 0.00 0.00 0.00 2.57
189 190 9.927668 GACTTGGGAAATGAAAGATAAAATGAA 57.072 29.630 0.00 0.00 0.00 2.57
190 191 9.710900 ACTTGGGAAATGAAAGATAAAATGAAC 57.289 29.630 0.00 0.00 0.00 3.18
191 192 9.709495 CTTGGGAAATGAAAGATAAAATGAACA 57.291 29.630 0.00 0.00 0.00 3.18
193 194 9.487790 TGGGAAATGAAAGATAAAATGAACAAC 57.512 29.630 0.00 0.00 0.00 3.32
194 195 9.487790 GGGAAATGAAAGATAAAATGAACAACA 57.512 29.630 0.00 0.00 0.00 3.33
198 199 9.918630 AATGAAAGATAAAATGAACAACAGGAG 57.081 29.630 0.00 0.00 0.00 3.69
199 200 7.885297 TGAAAGATAAAATGAACAACAGGAGG 58.115 34.615 0.00 0.00 0.00 4.30
200 201 7.723616 TGAAAGATAAAATGAACAACAGGAGGA 59.276 33.333 0.00 0.00 0.00 3.71
201 202 7.693969 AAGATAAAATGAACAACAGGAGGAG 57.306 36.000 0.00 0.00 0.00 3.69
202 203 5.649831 AGATAAAATGAACAACAGGAGGAGC 59.350 40.000 0.00 0.00 0.00 4.70
203 204 3.515602 AAATGAACAACAGGAGGAGCT 57.484 42.857 0.00 0.00 0.00 4.09
204 205 2.486472 ATGAACAACAGGAGGAGCTG 57.514 50.000 0.00 0.00 0.00 4.24
206 207 0.250467 GAACAACAGGAGGAGCTGCA 60.250 55.000 8.35 0.00 0.00 4.41
207 208 0.536006 AACAACAGGAGGAGCTGCAC 60.536 55.000 8.35 0.00 0.00 4.57
208 209 2.031516 CAACAGGAGGAGCTGCACG 61.032 63.158 8.35 0.00 0.00 5.34
209 210 2.511452 AACAGGAGGAGCTGCACGT 61.511 57.895 8.35 0.00 0.00 4.49
210 211 1.185618 AACAGGAGGAGCTGCACGTA 61.186 55.000 8.35 0.00 0.00 3.57
212 213 1.304547 AGGAGGAGCTGCACGTACT 60.305 57.895 8.35 0.00 0.00 2.73
213 214 1.139947 GGAGGAGCTGCACGTACTC 59.860 63.158 8.35 0.00 0.00 2.59
215 216 0.243907 GAGGAGCTGCACGTACTCAA 59.756 55.000 8.35 0.00 31.88 3.02
217 218 0.243907 GGAGCTGCACGTACTCAAGA 59.756 55.000 0.00 0.00 31.88 3.02
218 219 1.134965 GGAGCTGCACGTACTCAAGAT 60.135 52.381 0.00 0.00 31.88 2.40
220 221 1.002366 GCTGCACGTACTCAAGATGG 58.998 55.000 0.00 0.00 0.00 3.51
221 222 1.673033 GCTGCACGTACTCAAGATGGT 60.673 52.381 0.00 0.00 0.00 3.55
222 223 2.416836 GCTGCACGTACTCAAGATGGTA 60.417 50.000 0.00 0.00 0.00 3.25
224 225 2.823747 TGCACGTACTCAAGATGGTAGT 59.176 45.455 0.00 0.00 0.00 2.73
225 226 3.179830 GCACGTACTCAAGATGGTAGTG 58.820 50.000 0.00 0.00 0.00 2.74
226 227 3.119602 GCACGTACTCAAGATGGTAGTGA 60.120 47.826 0.00 0.00 0.00 3.41
228 229 4.395231 CACGTACTCAAGATGGTAGTGAGA 59.605 45.833 6.89 0.00 41.08 3.27
229 230 4.636648 ACGTACTCAAGATGGTAGTGAGAG 59.363 45.833 6.89 0.00 41.08 3.20
231 232 2.763448 ACTCAAGATGGTAGTGAGAGGC 59.237 50.000 6.89 0.00 41.08 4.70
232 233 2.762887 CTCAAGATGGTAGTGAGAGGCA 59.237 50.000 0.00 0.00 41.08 4.75
233 234 3.378512 TCAAGATGGTAGTGAGAGGCAT 58.621 45.455 0.00 0.00 0.00 4.40
234 235 3.386078 TCAAGATGGTAGTGAGAGGCATC 59.614 47.826 0.00 0.00 0.00 3.91
236 237 1.000283 GATGGTAGTGAGAGGCATCGG 60.000 57.143 0.00 0.00 0.00 4.18
237 238 0.033503 TGGTAGTGAGAGGCATCGGA 60.034 55.000 0.00 0.00 0.00 4.55
238 239 1.112113 GGTAGTGAGAGGCATCGGAA 58.888 55.000 0.00 0.00 0.00 4.30
239 240 1.480954 GGTAGTGAGAGGCATCGGAAA 59.519 52.381 0.00 0.00 0.00 3.13
240 241 2.093658 GGTAGTGAGAGGCATCGGAAAA 60.094 50.000 0.00 0.00 0.00 2.29
242 243 1.065854 AGTGAGAGGCATCGGAAAAGG 60.066 52.381 0.00 0.00 0.00 3.11
243 244 0.392998 TGAGAGGCATCGGAAAAGGC 60.393 55.000 0.00 0.00 0.00 4.35
244 245 0.392998 GAGAGGCATCGGAAAAGGCA 60.393 55.000 0.00 0.00 0.00 4.75
245 246 0.393537 AGAGGCATCGGAAAAGGCAG 60.394 55.000 0.00 0.00 0.00 4.85
247 248 2.418083 GGCATCGGAAAAGGCAGGG 61.418 63.158 0.00 0.00 0.00 4.45
248 249 2.418083 GCATCGGAAAAGGCAGGGG 61.418 63.158 0.00 0.00 0.00 4.79
249 250 1.000896 CATCGGAAAAGGCAGGGGT 60.001 57.895 0.00 0.00 0.00 4.95
250 251 0.611896 CATCGGAAAAGGCAGGGGTT 60.612 55.000 0.00 0.00 0.00 4.11
251 252 0.323451 ATCGGAAAAGGCAGGGGTTC 60.323 55.000 0.00 0.00 0.00 3.62
252 253 1.977009 CGGAAAAGGCAGGGGTTCC 60.977 63.158 0.00 0.00 36.89 3.62
253 254 1.609501 GGAAAAGGCAGGGGTTCCC 60.610 63.158 0.00 0.00 45.90 3.97
273 274 6.590656 TCCCAGAAGGAAATATATTGTGGT 57.409 37.500 0.00 0.00 43.78 4.16
274 275 6.364701 TCCCAGAAGGAAATATATTGTGGTG 58.635 40.000 0.00 0.00 43.78 4.17
275 276 5.536161 CCCAGAAGGAAATATATTGTGGTGG 59.464 44.000 0.00 2.49 36.02 4.61
276 277 6.129179 CCAGAAGGAAATATATTGTGGTGGT 58.871 40.000 0.00 0.00 33.79 4.16
277 278 6.263168 CCAGAAGGAAATATATTGTGGTGGTC 59.737 42.308 0.00 0.00 33.79 4.02
279 280 8.210946 CAGAAGGAAATATATTGTGGTGGTCTA 58.789 37.037 0.00 0.00 0.00 2.59
280 281 8.778059 AGAAGGAAATATATTGTGGTGGTCTAA 58.222 33.333 0.00 0.00 0.00 2.10
281 282 8.980481 AAGGAAATATATTGTGGTGGTCTAAG 57.020 34.615 0.00 0.00 0.00 2.18
282 283 7.518188 AGGAAATATATTGTGGTGGTCTAAGG 58.482 38.462 0.00 0.00 0.00 2.69
283 284 7.349859 AGGAAATATATTGTGGTGGTCTAAGGA 59.650 37.037 0.00 0.00 0.00 3.36
284 285 7.444487 GGAAATATATTGTGGTGGTCTAAGGAC 59.556 40.741 0.00 0.00 41.43 3.85
285 286 7.691993 AATATATTGTGGTGGTCTAAGGACT 57.308 36.000 0.00 0.00 41.82 3.85
286 287 7.691993 ATATATTGTGGTGGTCTAAGGACTT 57.308 36.000 0.00 0.00 41.82 3.01
287 288 3.485463 TTGTGGTGGTCTAAGGACTTG 57.515 47.619 0.00 0.00 41.82 3.16
288 289 2.684943 TGTGGTGGTCTAAGGACTTGA 58.315 47.619 0.00 0.00 41.82 3.02
289 290 3.042682 TGTGGTGGTCTAAGGACTTGAA 58.957 45.455 0.00 0.00 41.82 2.69
290 291 3.650942 TGTGGTGGTCTAAGGACTTGAAT 59.349 43.478 0.00 0.00 41.82 2.57
291 292 4.104102 TGTGGTGGTCTAAGGACTTGAATT 59.896 41.667 0.00 0.00 41.82 2.17
292 293 5.070685 GTGGTGGTCTAAGGACTTGAATTT 58.929 41.667 0.00 0.00 41.82 1.82
293 294 5.048713 GTGGTGGTCTAAGGACTTGAATTTG 60.049 44.000 0.00 0.00 41.82 2.32
294 295 5.070685 GGTGGTCTAAGGACTTGAATTTGT 58.929 41.667 0.00 0.00 41.82 2.83
295 296 5.535030 GGTGGTCTAAGGACTTGAATTTGTT 59.465 40.000 0.00 0.00 41.82 2.83
296 297 6.040504 GGTGGTCTAAGGACTTGAATTTGTTT 59.959 38.462 0.00 0.00 41.82 2.83
298 299 5.920840 GGTCTAAGGACTTGAATTTGTTTGC 59.079 40.000 0.00 0.00 41.82 3.68
299 300 6.460953 GGTCTAAGGACTTGAATTTGTTTGCA 60.461 38.462 0.00 0.00 41.82 4.08
301 302 4.326504 AGGACTTGAATTTGTTTGCAGG 57.673 40.909 0.00 0.00 0.00 4.85
302 303 3.960102 AGGACTTGAATTTGTTTGCAGGA 59.040 39.130 0.00 0.00 0.00 3.86
303 304 4.051237 GGACTTGAATTTGTTTGCAGGAC 58.949 43.478 0.00 0.00 0.00 3.85
305 306 5.280654 ACTTGAATTTGTTTGCAGGACAT 57.719 34.783 5.91 0.00 0.00 3.06
306 307 5.051816 ACTTGAATTTGTTTGCAGGACATG 58.948 37.500 5.91 0.00 0.00 3.21
308 309 5.021033 TGAATTTGTTTGCAGGACATGTT 57.979 34.783 0.00 4.72 0.00 2.71
309 310 6.154203 TGAATTTGTTTGCAGGACATGTTA 57.846 33.333 0.00 0.00 0.00 2.41
310 311 5.982516 TGAATTTGTTTGCAGGACATGTTAC 59.017 36.000 0.00 0.00 0.00 2.50
311 312 4.991153 TTTGTTTGCAGGACATGTTACA 57.009 36.364 0.00 0.00 0.00 2.41
312 313 4.991153 TTGTTTGCAGGACATGTTACAA 57.009 36.364 0.00 0.00 0.00 2.41
314 315 3.243367 TGTTTGCAGGACATGTTACAAGC 60.243 43.478 0.00 5.52 0.00 4.01
315 316 1.533625 TGCAGGACATGTTACAAGCC 58.466 50.000 0.00 0.00 0.00 4.35
317 318 2.304470 TGCAGGACATGTTACAAGCCTA 59.696 45.455 0.00 0.00 0.00 3.93
318 319 2.678336 GCAGGACATGTTACAAGCCTAC 59.322 50.000 0.00 0.00 0.00 3.18
319 320 3.868369 GCAGGACATGTTACAAGCCTACA 60.868 47.826 0.00 0.00 0.00 2.74
320 321 4.323417 CAGGACATGTTACAAGCCTACAA 58.677 43.478 0.00 0.00 0.00 2.41
321 322 4.943705 CAGGACATGTTACAAGCCTACAAT 59.056 41.667 0.00 0.00 0.00 2.71
322 323 6.112734 CAGGACATGTTACAAGCCTACAATA 58.887 40.000 0.00 0.00 0.00 1.90
323 324 6.037172 CAGGACATGTTACAAGCCTACAATAC 59.963 42.308 0.00 0.00 0.00 1.89
324 325 5.296035 GGACATGTTACAAGCCTACAATACC 59.704 44.000 0.00 0.00 0.00 2.73
326 327 6.242396 ACATGTTACAAGCCTACAATACCAA 58.758 36.000 0.00 0.00 0.00 3.67
327 328 6.889722 ACATGTTACAAGCCTACAATACCAAT 59.110 34.615 0.00 0.00 0.00 3.16
329 330 8.559536 CATGTTACAAGCCTACAATACCAATAG 58.440 37.037 0.00 0.00 0.00 1.73
330 331 6.540914 TGTTACAAGCCTACAATACCAATAGC 59.459 38.462 0.00 0.00 0.00 2.97
331 332 5.373812 ACAAGCCTACAATACCAATAGCT 57.626 39.130 0.00 0.00 0.00 3.32
332 333 5.755849 ACAAGCCTACAATACCAATAGCTT 58.244 37.500 0.00 0.00 0.00 3.74
333 334 6.187682 ACAAGCCTACAATACCAATAGCTTT 58.812 36.000 0.00 0.00 0.00 3.51
335 336 4.580580 AGCCTACAATACCAATAGCTTTGC 59.419 41.667 0.00 0.00 0.00 3.68
336 337 4.580580 GCCTACAATACCAATAGCTTTGCT 59.419 41.667 0.00 0.00 43.41 3.91
337 338 5.506317 GCCTACAATACCAATAGCTTTGCTG 60.506 44.000 0.00 0.00 40.10 4.41
338 339 5.590259 CCTACAATACCAATAGCTTTGCTGT 59.410 40.000 0.00 0.00 40.10 4.40
340 341 4.399303 ACAATACCAATAGCTTTGCTGTCC 59.601 41.667 0.00 0.00 40.10 4.02
341 342 1.839424 ACCAATAGCTTTGCTGTCCC 58.161 50.000 0.00 0.00 40.10 4.46
342 343 1.075374 ACCAATAGCTTTGCTGTCCCA 59.925 47.619 0.00 0.00 40.10 4.37
344 345 1.747355 CAATAGCTTTGCTGTCCCAGG 59.253 52.381 0.00 0.00 40.10 4.45
345 346 1.289160 ATAGCTTTGCTGTCCCAGGA 58.711 50.000 0.00 0.00 40.10 3.86
346 347 1.289160 TAGCTTTGCTGTCCCAGGAT 58.711 50.000 0.00 0.00 40.10 3.24
347 348 1.289160 AGCTTTGCTGTCCCAGGATA 58.711 50.000 0.00 0.00 37.57 2.59
348 349 1.849039 AGCTTTGCTGTCCCAGGATAT 59.151 47.619 0.00 0.00 37.57 1.63
349 350 2.243221 AGCTTTGCTGTCCCAGGATATT 59.757 45.455 0.00 0.00 37.57 1.28
350 351 3.026694 GCTTTGCTGTCCCAGGATATTT 58.973 45.455 0.00 0.00 30.73 1.40
351 352 3.181483 GCTTTGCTGTCCCAGGATATTTG 60.181 47.826 0.00 0.00 30.73 2.32
352 353 3.737559 TTGCTGTCCCAGGATATTTGT 57.262 42.857 0.00 0.00 30.73 2.83
353 354 3.737559 TGCTGTCCCAGGATATTTGTT 57.262 42.857 0.00 0.00 31.21 2.83
354 355 4.046286 TGCTGTCCCAGGATATTTGTTT 57.954 40.909 0.00 0.00 31.21 2.83
356 357 3.131046 GCTGTCCCAGGATATTTGTTTGG 59.869 47.826 0.00 0.00 31.21 3.28
357 358 3.096092 TGTCCCAGGATATTTGTTTGGC 58.904 45.455 0.00 0.00 0.00 4.52
358 359 3.096092 GTCCCAGGATATTTGTTTGGCA 58.904 45.455 0.00 0.00 0.00 4.92
359 360 3.096092 TCCCAGGATATTTGTTTGGCAC 58.904 45.455 0.00 0.00 0.00 5.01
360 361 2.168313 CCCAGGATATTTGTTTGGCACC 59.832 50.000 0.00 0.00 0.00 5.01
361 362 2.830923 CCAGGATATTTGTTTGGCACCA 59.169 45.455 0.00 0.00 0.00 4.17
362 363 3.368323 CCAGGATATTTGTTTGGCACCAC 60.368 47.826 0.00 0.00 0.00 4.16
363 364 3.511146 CAGGATATTTGTTTGGCACCACT 59.489 43.478 0.00 0.00 0.00 4.00
365 366 3.368323 GGATATTTGTTTGGCACCACTGG 60.368 47.826 0.00 0.00 0.00 4.00
366 367 1.494960 ATTTGTTTGGCACCACTGGT 58.505 45.000 0.00 0.00 35.62 4.00
378 379 3.540211 CACTGGTGGATCTCGCTTT 57.460 52.632 0.00 0.00 0.00 3.51
380 381 0.674895 ACTGGTGGATCTCGCTTTGC 60.675 55.000 0.00 0.00 0.00 3.68
381 382 0.392193 CTGGTGGATCTCGCTTTGCT 60.392 55.000 0.00 0.00 0.00 3.91
382 383 0.391661 TGGTGGATCTCGCTTTGCTC 60.392 55.000 0.00 0.00 0.00 4.26
384 385 1.153568 TGGATCTCGCTTTGCTCGG 60.154 57.895 0.00 0.00 0.00 4.63
385 386 2.529619 GGATCTCGCTTTGCTCGGC 61.530 63.158 0.00 0.00 0.00 5.54
386 387 1.811266 GATCTCGCTTTGCTCGGCA 60.811 57.895 0.00 0.00 36.47 5.69
397 398 3.819564 TTGCTCGGCAACATAGACTAT 57.180 42.857 7.15 0.00 43.99 2.12
398 399 4.929819 TTGCTCGGCAACATAGACTATA 57.070 40.909 7.15 0.00 43.99 1.31
399 400 4.929819 TGCTCGGCAACATAGACTATAA 57.070 40.909 0.00 0.00 34.76 0.98
590 591 1.805869 CATGGATAGGCTAGCTGCAC 58.194 55.000 15.72 4.47 45.15 4.57
706 707 7.419204 GCTACGTGAACTCTTAGTTGATCTAT 58.581 38.462 0.00 0.00 38.80 1.98
939 1679 2.301870 TGTGCGTATCTTCTTCCACCTT 59.698 45.455 0.00 0.00 0.00 3.50
1234 1976 4.619227 CCCAACGCGTGTGGGACT 62.619 66.667 36.06 11.94 42.42 3.85
1504 5466 1.016130 CGAGATCGCCAACAAGCTGT 61.016 55.000 0.00 0.00 0.00 4.40
1681 5646 2.915659 ACCGGAGCGACTTGGACA 60.916 61.111 9.46 0.00 0.00 4.02
1827 5799 3.744238 TGCTACAACTGCAAGAGTACA 57.256 42.857 0.00 0.00 37.51 2.90
2215 6238 3.864789 AGCAGAAAGAGGTGGAGAAAA 57.135 42.857 0.00 0.00 0.00 2.29
2499 8164 4.792521 AGACTCTGTGCGTATCTTCTTT 57.207 40.909 0.00 0.00 0.00 2.52
2505 8170 3.997021 CTGTGCGTATCTTCTTTCACCTT 59.003 43.478 0.00 0.00 0.00 3.50
2532 8197 3.197766 TGTGTGTGTGAGTCTTCTTCCTT 59.802 43.478 0.00 0.00 0.00 3.36
2570 8235 8.443937 CCTACAGTAACAGCAATAGAAAAACTC 58.556 37.037 0.00 0.00 0.00 3.01
2583 8248 4.077822 AGAAAAACTCTTCATGGGAGCAG 58.922 43.478 13.78 6.02 34.46 4.24
2601 8266 4.440880 AGCAGAGCTGAATAACATGACTC 58.559 43.478 0.00 0.00 37.57 3.36
2602 8267 4.161942 AGCAGAGCTGAATAACATGACTCT 59.838 41.667 0.00 0.00 37.57 3.24
2613 8278 1.071228 ACATGACTCTCTTGTGCTGCA 59.929 47.619 0.00 0.00 34.09 4.41
2616 8281 3.683365 TGACTCTCTTGTGCTGCATTA 57.317 42.857 5.27 0.00 0.00 1.90
2621 8286 4.823989 ACTCTCTTGTGCTGCATTAAAACT 59.176 37.500 5.27 0.00 0.00 2.66
2622 8287 5.997746 ACTCTCTTGTGCTGCATTAAAACTA 59.002 36.000 5.27 0.00 0.00 2.24
2634 8299 7.809806 GCTGCATTAAAACTACACATCTTCTTT 59.190 33.333 0.00 0.00 0.00 2.52
2678 8343 0.921896 ACCTTGCTCATGGTGGCTAT 59.078 50.000 6.64 0.00 37.45 2.97
2741 8569 1.019673 AATGCTATCAGTGCAAGCGG 58.980 50.000 10.70 0.00 44.01 5.52
2742 8570 0.178767 ATGCTATCAGTGCAAGCGGA 59.821 50.000 10.70 0.00 44.01 5.54
2744 8572 0.179100 GCTATCAGTGCAAGCGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
2745 8573 1.539929 GCTATCAGTGCAAGCGGAGAT 60.540 52.381 0.00 0.00 0.00 2.75
2746 8574 2.402305 CTATCAGTGCAAGCGGAGATC 58.598 52.381 0.00 0.00 0.00 2.75
2748 8576 0.538584 TCAGTGCAAGCGGAGATCAT 59.461 50.000 0.00 0.00 0.00 2.45
2749 8577 1.756538 TCAGTGCAAGCGGAGATCATA 59.243 47.619 0.00 0.00 0.00 2.15
2750 8578 2.168313 TCAGTGCAAGCGGAGATCATAA 59.832 45.455 0.00 0.00 0.00 1.90
2753 8581 2.939103 GTGCAAGCGGAGATCATAAAGT 59.061 45.455 0.00 0.00 0.00 2.66
2754 8582 2.938451 TGCAAGCGGAGATCATAAAGTG 59.062 45.455 0.00 0.00 0.00 3.16
2756 8584 3.001736 GCAAGCGGAGATCATAAAGTGAC 59.998 47.826 0.00 0.00 40.28 3.67
2757 8585 3.460857 AGCGGAGATCATAAAGTGACC 57.539 47.619 0.00 0.00 40.28 4.02
2758 8586 3.034635 AGCGGAGATCATAAAGTGACCT 58.965 45.455 0.00 0.00 40.28 3.85
2760 8588 3.126831 CGGAGATCATAAAGTGACCTGC 58.873 50.000 0.00 0.00 40.28 4.85
2761 8589 3.430790 CGGAGATCATAAAGTGACCTGCA 60.431 47.826 0.00 0.00 38.68 4.41
2762 8590 5.500311 CGGAGATCATAAAGTGACCTGCAC 61.500 50.000 0.00 0.00 38.68 4.57
2777 8605 4.248842 CACCCAGGACGGTGTGCA 62.249 66.667 0.00 0.00 46.97 4.57
2778 8606 3.484806 ACCCAGGACGGTGTGCAA 61.485 61.111 0.00 0.00 33.77 4.08
2780 8608 2.425592 CCAGGACGGTGTGCAAGA 59.574 61.111 0.00 0.00 0.00 3.02
2781 8609 1.227823 CCAGGACGGTGTGCAAGAA 60.228 57.895 0.00 0.00 0.00 2.52
2782 8610 0.817634 CCAGGACGGTGTGCAAGAAA 60.818 55.000 0.00 0.00 0.00 2.52
2783 8611 1.021202 CAGGACGGTGTGCAAGAAAA 58.979 50.000 0.00 0.00 0.00 2.29
2784 8612 1.403679 CAGGACGGTGTGCAAGAAAAA 59.596 47.619 0.00 0.00 0.00 1.94
2785 8613 2.034558 CAGGACGGTGTGCAAGAAAAAT 59.965 45.455 0.00 0.00 0.00 1.82
2786 8614 3.252215 CAGGACGGTGTGCAAGAAAAATA 59.748 43.478 0.00 0.00 0.00 1.40
2787 8615 4.079253 AGGACGGTGTGCAAGAAAAATAT 58.921 39.130 0.00 0.00 0.00 1.28
2788 8616 5.123186 CAGGACGGTGTGCAAGAAAAATATA 59.877 40.000 0.00 0.00 0.00 0.86
2789 8617 5.885912 AGGACGGTGTGCAAGAAAAATATAT 59.114 36.000 0.00 0.00 0.00 0.86
2790 8618 6.377146 AGGACGGTGTGCAAGAAAAATATATT 59.623 34.615 0.00 0.00 0.00 1.28
2791 8619 7.033185 GGACGGTGTGCAAGAAAAATATATTT 58.967 34.615 4.81 4.81 0.00 1.40
2792 8620 8.185505 GGACGGTGTGCAAGAAAAATATATTTA 58.814 33.333 11.07 0.00 0.00 1.40
2793 8621 9.562583 GACGGTGTGCAAGAAAAATATATTTAA 57.437 29.630 11.07 0.00 0.00 1.52
2794 8622 9.915629 ACGGTGTGCAAGAAAAATATATTTAAA 57.084 25.926 11.07 0.00 0.00 1.52
2820 8648 6.907741 TCATCATCTAGAATAGCTGAGTTCG 58.092 40.000 0.00 0.00 45.72 3.95
2821 8649 6.488344 TCATCATCTAGAATAGCTGAGTTCGT 59.512 38.462 0.00 0.00 45.72 3.85
2822 8650 6.066054 TCATCTAGAATAGCTGAGTTCGTG 57.934 41.667 0.00 0.00 38.76 4.35
2824 8652 6.766467 TCATCTAGAATAGCTGAGTTCGTGTA 59.234 38.462 0.00 0.00 38.76 2.90
2825 8653 7.445707 TCATCTAGAATAGCTGAGTTCGTGTAT 59.554 37.037 0.00 0.00 38.76 2.29
2828 8656 8.148999 TCTAGAATAGCTGAGTTCGTGTATAGA 58.851 37.037 0.00 0.00 38.99 1.98
2829 8657 7.753309 AGAATAGCTGAGTTCGTGTATAGAT 57.247 36.000 0.00 0.00 0.00 1.98
2830 8658 8.172352 AGAATAGCTGAGTTCGTGTATAGATT 57.828 34.615 0.00 0.00 0.00 2.40
2833 8661 8.804688 ATAGCTGAGTTCGTGTATAGATTTTC 57.195 34.615 0.00 0.00 0.00 2.29
2834 8662 6.043411 AGCTGAGTTCGTGTATAGATTTTCC 58.957 40.000 0.00 0.00 0.00 3.13
2835 8663 5.051641 GCTGAGTTCGTGTATAGATTTTCCG 60.052 44.000 0.00 0.00 0.00 4.30
2836 8664 5.345702 TGAGTTCGTGTATAGATTTTCCGG 58.654 41.667 0.00 0.00 0.00 5.14
2837 8665 4.117685 AGTTCGTGTATAGATTTTCCGGC 58.882 43.478 0.00 0.00 0.00 6.13
2839 8667 2.431419 TCGTGTATAGATTTTCCGGCCA 59.569 45.455 2.24 0.00 0.00 5.36
2842 8670 3.560068 GTGTATAGATTTTCCGGCCAGTG 59.440 47.826 2.24 0.00 0.00 3.66
2844 8672 0.618458 TAGATTTTCCGGCCAGTGCT 59.382 50.000 2.24 0.00 37.74 4.40
2845 8673 0.251341 AGATTTTCCGGCCAGTGCTT 60.251 50.000 2.24 0.00 37.74 3.91
2846 8674 0.603065 GATTTTCCGGCCAGTGCTTT 59.397 50.000 2.24 0.00 37.74 3.51
2847 8675 0.318120 ATTTTCCGGCCAGTGCTTTG 59.682 50.000 2.24 0.00 37.74 2.77
2848 8676 0.753479 TTTTCCGGCCAGTGCTTTGA 60.753 50.000 2.24 0.00 37.74 2.69
2850 8678 0.753479 TTCCGGCCAGTGCTTTGAAA 60.753 50.000 2.24 0.00 37.74 2.69
2851 8679 0.753479 TCCGGCCAGTGCTTTGAAAA 60.753 50.000 2.24 0.00 37.74 2.29
2852 8680 0.318120 CCGGCCAGTGCTTTGAAAAT 59.682 50.000 2.24 0.00 37.74 1.82
2867 8695 7.083858 GCTTTGAAAATGCAAGTAGTGTATCA 58.916 34.615 0.00 0.00 45.34 2.15
2868 8696 7.272084 GCTTTGAAAATGCAAGTAGTGTATCAG 59.728 37.037 0.00 0.00 45.34 2.90
2870 8698 8.840833 TTGAAAATGCAAGTAGTGTATCAGTA 57.159 30.769 0.00 0.00 30.22 2.74
2871 8699 9.448438 TTGAAAATGCAAGTAGTGTATCAGTAT 57.552 29.630 0.00 0.00 30.22 2.12
2873 8701 7.792374 AAATGCAAGTAGTGTATCAGTATGG 57.208 36.000 0.00 0.00 36.16 2.74
2874 8702 4.693283 TGCAAGTAGTGTATCAGTATGGC 58.307 43.478 0.00 0.00 36.16 4.40
2875 8703 4.161377 TGCAAGTAGTGTATCAGTATGGCA 59.839 41.667 0.00 0.00 36.16 4.92
2876 8704 4.508124 GCAAGTAGTGTATCAGTATGGCAC 59.492 45.833 0.00 0.00 36.16 5.01
2877 8705 5.682471 GCAAGTAGTGTATCAGTATGGCACT 60.682 44.000 0.00 0.00 42.75 4.40
2879 8707 4.585162 AGTAGTGTATCAGTATGGCACTCC 59.415 45.833 0.00 0.00 40.76 3.85
2892 8720 2.460757 GCACTCCATGGCAATTGTTT 57.539 45.000 6.96 0.00 0.00 2.83
2893 8721 3.591196 GCACTCCATGGCAATTGTTTA 57.409 42.857 6.96 0.00 0.00 2.01
2894 8722 4.127566 GCACTCCATGGCAATTGTTTAT 57.872 40.909 6.96 0.00 0.00 1.40
2897 8725 5.722263 CACTCCATGGCAATTGTTTATTCA 58.278 37.500 6.96 0.00 0.00 2.57
2898 8726 6.342906 CACTCCATGGCAATTGTTTATTCAT 58.657 36.000 6.96 0.02 0.00 2.57
2899 8727 6.256975 CACTCCATGGCAATTGTTTATTCATG 59.743 38.462 6.96 10.78 32.35 3.07
2902 8730 7.392418 TCCATGGCAATTGTTTATTCATGAAA 58.608 30.769 13.09 0.00 33.47 2.69
2903 8731 8.047911 TCCATGGCAATTGTTTATTCATGAAAT 58.952 29.630 13.09 4.08 33.47 2.17
2930 8758 9.936759 AAAAGAACAACAAAATCCTTCAGTAAA 57.063 25.926 0.00 0.00 0.00 2.01
2931 8759 8.926715 AAGAACAACAAAATCCTTCAGTAAAC 57.073 30.769 0.00 0.00 0.00 2.01
2933 8761 6.156748 ACAACAAAATCCTTCAGTAAACCC 57.843 37.500 0.00 0.00 0.00 4.11
2935 8763 6.155393 ACAACAAAATCCTTCAGTAAACCCAA 59.845 34.615 0.00 0.00 0.00 4.12
2936 8764 6.156748 ACAAAATCCTTCAGTAAACCCAAC 57.843 37.500 0.00 0.00 0.00 3.77
2937 8765 5.659079 ACAAAATCCTTCAGTAAACCCAACA 59.341 36.000 0.00 0.00 0.00 3.33
2938 8766 6.155393 ACAAAATCCTTCAGTAAACCCAACAA 59.845 34.615 0.00 0.00 0.00 2.83
2939 8767 6.994421 AAATCCTTCAGTAAACCCAACAAT 57.006 33.333 0.00 0.00 0.00 2.71
2940 8768 6.590234 AATCCTTCAGTAAACCCAACAATC 57.410 37.500 0.00 0.00 0.00 2.67
2941 8769 5.319043 TCCTTCAGTAAACCCAACAATCT 57.681 39.130 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.216622 ACCCTGATACAAAGGCTAGTCATA 58.783 41.667 0.00 0.00 33.07 2.15
24 25 4.901849 TGTCCTTCATATAAGAGGACCCTG 59.098 45.833 20.82 0.00 46.06 4.45
40 41 1.822371 GAGGGAGAGAGTGTGTCCTTC 59.178 57.143 3.29 1.52 37.52 3.46
85 86 1.938585 TAGGCACAAGCTACTCTGGT 58.061 50.000 0.00 0.00 41.70 4.00
113 114 1.341383 GGGTAGTACTCTGGTCCGGAA 60.341 57.143 5.23 0.00 0.00 4.30
149 150 1.202582 CCAAGTCTCGACTCCATTCGT 59.797 52.381 0.00 0.00 41.58 3.85
151 152 1.825474 TCCCAAGTCTCGACTCCATTC 59.175 52.381 0.00 0.00 41.58 2.67
152 153 1.938585 TCCCAAGTCTCGACTCCATT 58.061 50.000 0.00 0.00 41.58 3.16
153 154 1.938585 TTCCCAAGTCTCGACTCCAT 58.061 50.000 0.00 0.00 41.58 3.41
154 155 1.712056 TTTCCCAAGTCTCGACTCCA 58.288 50.000 0.00 0.00 41.58 3.86
155 156 2.233922 TCATTTCCCAAGTCTCGACTCC 59.766 50.000 0.00 0.00 41.58 3.85
157 158 4.040461 TCTTTCATTTCCCAAGTCTCGACT 59.960 41.667 0.00 0.00 44.94 4.18
158 159 4.315803 TCTTTCATTTCCCAAGTCTCGAC 58.684 43.478 0.00 0.00 0.00 4.20
159 160 4.617253 TCTTTCATTTCCCAAGTCTCGA 57.383 40.909 0.00 0.00 0.00 4.04
161 162 9.578439 CATTTTATCTTTCATTTCCCAAGTCTC 57.422 33.333 0.00 0.00 0.00 3.36
162 163 9.312904 TCATTTTATCTTTCATTTCCCAAGTCT 57.687 29.630 0.00 0.00 0.00 3.24
164 165 9.710900 GTTCATTTTATCTTTCATTTCCCAAGT 57.289 29.630 0.00 0.00 0.00 3.16
165 166 9.709495 TGTTCATTTTATCTTTCATTTCCCAAG 57.291 29.630 0.00 0.00 0.00 3.61
167 168 9.487790 GTTGTTCATTTTATCTTTCATTTCCCA 57.512 29.630 0.00 0.00 0.00 4.37
168 169 9.487790 TGTTGTTCATTTTATCTTTCATTTCCC 57.512 29.630 0.00 0.00 0.00 3.97
172 173 9.918630 CTCCTGTTGTTCATTTTATCTTTCATT 57.081 29.630 0.00 0.00 0.00 2.57
173 174 8.526147 CCTCCTGTTGTTCATTTTATCTTTCAT 58.474 33.333 0.00 0.00 0.00 2.57
176 177 7.309438 GCTCCTCCTGTTGTTCATTTTATCTTT 60.309 37.037 0.00 0.00 0.00 2.52
177 178 6.151817 GCTCCTCCTGTTGTTCATTTTATCTT 59.848 38.462 0.00 0.00 0.00 2.40
178 179 5.649831 GCTCCTCCTGTTGTTCATTTTATCT 59.350 40.000 0.00 0.00 0.00 1.98
179 180 5.649831 AGCTCCTCCTGTTGTTCATTTTATC 59.350 40.000 0.00 0.00 0.00 1.75
180 181 5.416952 CAGCTCCTCCTGTTGTTCATTTTAT 59.583 40.000 0.00 0.00 0.00 1.40
181 182 4.761739 CAGCTCCTCCTGTTGTTCATTTTA 59.238 41.667 0.00 0.00 0.00 1.52
182 183 3.571401 CAGCTCCTCCTGTTGTTCATTTT 59.429 43.478 0.00 0.00 0.00 1.82
183 184 3.152341 CAGCTCCTCCTGTTGTTCATTT 58.848 45.455 0.00 0.00 0.00 2.32
184 185 2.787994 CAGCTCCTCCTGTTGTTCATT 58.212 47.619 0.00 0.00 0.00 2.57
185 186 1.612726 GCAGCTCCTCCTGTTGTTCAT 60.613 52.381 0.00 0.00 35.28 2.57
186 187 0.250467 GCAGCTCCTCCTGTTGTTCA 60.250 55.000 0.00 0.00 35.28 3.18
187 188 0.250467 TGCAGCTCCTCCTGTTGTTC 60.250 55.000 0.00 0.00 35.28 3.18
188 189 0.536006 GTGCAGCTCCTCCTGTTGTT 60.536 55.000 0.00 0.00 35.28 2.83
189 190 1.072159 GTGCAGCTCCTCCTGTTGT 59.928 57.895 0.00 0.00 35.28 3.32
190 191 2.031516 CGTGCAGCTCCTCCTGTTG 61.032 63.158 0.00 0.00 35.28 3.33
191 192 1.185618 TACGTGCAGCTCCTCCTGTT 61.186 55.000 0.00 0.00 35.28 3.16
192 193 1.606601 TACGTGCAGCTCCTCCTGT 60.607 57.895 0.00 0.00 35.28 4.00
193 194 1.153745 GTACGTGCAGCTCCTCCTG 60.154 63.158 0.00 0.00 35.93 3.86
194 195 1.304547 AGTACGTGCAGCTCCTCCT 60.305 57.895 6.38 0.00 0.00 3.69
196 197 0.243907 TTGAGTACGTGCAGCTCCTC 59.756 55.000 6.38 0.00 0.00 3.71
197 198 0.244994 CTTGAGTACGTGCAGCTCCT 59.755 55.000 6.38 0.00 0.00 3.69
198 199 0.243907 TCTTGAGTACGTGCAGCTCC 59.756 55.000 6.38 0.00 0.00 4.70
199 200 1.923204 CATCTTGAGTACGTGCAGCTC 59.077 52.381 6.38 5.47 0.00 4.09
200 201 1.404717 CCATCTTGAGTACGTGCAGCT 60.405 52.381 6.38 0.00 0.00 4.24
201 202 1.002366 CCATCTTGAGTACGTGCAGC 58.998 55.000 6.38 0.00 0.00 5.25
202 203 2.370281 ACCATCTTGAGTACGTGCAG 57.630 50.000 6.38 0.00 0.00 4.41
203 204 2.823747 ACTACCATCTTGAGTACGTGCA 59.176 45.455 6.38 0.00 0.00 4.57
204 205 3.119602 TCACTACCATCTTGAGTACGTGC 60.120 47.826 0.00 0.00 0.00 5.34
206 207 4.586884 TCTCACTACCATCTTGAGTACGT 58.413 43.478 0.00 0.00 38.35 3.57
207 208 4.035792 CCTCTCACTACCATCTTGAGTACG 59.964 50.000 0.00 0.00 38.35 3.67
208 209 4.202070 GCCTCTCACTACCATCTTGAGTAC 60.202 50.000 0.00 0.00 38.35 2.73
209 210 3.954904 GCCTCTCACTACCATCTTGAGTA 59.045 47.826 0.00 0.00 38.35 2.59
210 211 2.763448 GCCTCTCACTACCATCTTGAGT 59.237 50.000 0.00 0.00 38.35 3.41
212 213 2.820178 TGCCTCTCACTACCATCTTGA 58.180 47.619 0.00 0.00 0.00 3.02
213 214 3.726607 GATGCCTCTCACTACCATCTTG 58.273 50.000 0.00 0.00 31.88 3.02
215 216 1.959985 CGATGCCTCTCACTACCATCT 59.040 52.381 0.00 0.00 32.28 2.90
217 218 1.043816 CCGATGCCTCTCACTACCAT 58.956 55.000 0.00 0.00 0.00 3.55
218 219 0.033503 TCCGATGCCTCTCACTACCA 60.034 55.000 0.00 0.00 0.00 3.25
220 221 2.961526 TTTCCGATGCCTCTCACTAC 57.038 50.000 0.00 0.00 0.00 2.73
221 222 2.168521 CCTTTTCCGATGCCTCTCACTA 59.831 50.000 0.00 0.00 0.00 2.74
222 223 1.065854 CCTTTTCCGATGCCTCTCACT 60.066 52.381 0.00 0.00 0.00 3.41
224 225 0.392998 GCCTTTTCCGATGCCTCTCA 60.393 55.000 0.00 0.00 0.00 3.27
225 226 0.392998 TGCCTTTTCCGATGCCTCTC 60.393 55.000 0.00 0.00 0.00 3.20
226 227 0.393537 CTGCCTTTTCCGATGCCTCT 60.394 55.000 0.00 0.00 0.00 3.69
228 229 1.379044 CCTGCCTTTTCCGATGCCT 60.379 57.895 0.00 0.00 0.00 4.75
229 230 2.418083 CCCTGCCTTTTCCGATGCC 61.418 63.158 0.00 0.00 0.00 4.40
231 232 0.611896 AACCCCTGCCTTTTCCGATG 60.612 55.000 0.00 0.00 0.00 3.84
232 233 0.323451 GAACCCCTGCCTTTTCCGAT 60.323 55.000 0.00 0.00 0.00 4.18
233 234 1.074248 GAACCCCTGCCTTTTCCGA 59.926 57.895 0.00 0.00 0.00 4.55
234 235 1.977009 GGAACCCCTGCCTTTTCCG 60.977 63.158 0.00 0.00 0.00 4.30
250 251 6.364701 CACCACAATATATTTCCTTCTGGGA 58.635 40.000 0.00 0.00 43.41 4.37
251 252 5.536161 CCACCACAATATATTTCCTTCTGGG 59.464 44.000 0.00 0.00 0.00 4.45
252 253 6.129179 ACCACCACAATATATTTCCTTCTGG 58.871 40.000 0.00 0.00 0.00 3.86
253 254 7.056635 AGACCACCACAATATATTTCCTTCTG 58.943 38.462 0.00 0.00 0.00 3.02
254 255 7.213178 AGACCACCACAATATATTTCCTTCT 57.787 36.000 0.00 0.00 0.00 2.85
255 256 8.974060 TTAGACCACCACAATATATTTCCTTC 57.026 34.615 0.00 0.00 0.00 3.46
256 257 7.998964 CCTTAGACCACCACAATATATTTCCTT 59.001 37.037 0.00 0.00 0.00 3.36
257 258 7.349859 TCCTTAGACCACCACAATATATTTCCT 59.650 37.037 0.00 0.00 0.00 3.36
258 259 7.444487 GTCCTTAGACCACCACAATATATTTCC 59.556 40.741 0.00 0.00 37.00 3.13
259 260 8.211629 AGTCCTTAGACCACCACAATATATTTC 58.788 37.037 0.00 0.00 44.72 2.17
261 262 7.691993 AGTCCTTAGACCACCACAATATATT 57.308 36.000 0.00 0.00 44.72 1.28
262 263 7.347222 TCAAGTCCTTAGACCACCACAATATAT 59.653 37.037 0.00 0.00 44.72 0.86
263 264 6.670464 TCAAGTCCTTAGACCACCACAATATA 59.330 38.462 0.00 0.00 44.72 0.86
264 265 5.487488 TCAAGTCCTTAGACCACCACAATAT 59.513 40.000 0.00 0.00 44.72 1.28
265 266 4.841813 TCAAGTCCTTAGACCACCACAATA 59.158 41.667 0.00 0.00 44.72 1.90
266 267 3.650942 TCAAGTCCTTAGACCACCACAAT 59.349 43.478 0.00 0.00 44.72 2.71
267 268 3.042682 TCAAGTCCTTAGACCACCACAA 58.957 45.455 0.00 0.00 44.72 3.33
268 269 2.684943 TCAAGTCCTTAGACCACCACA 58.315 47.619 0.00 0.00 44.72 4.17
270 271 4.993705 AATTCAAGTCCTTAGACCACCA 57.006 40.909 0.00 0.00 44.72 4.17
271 272 5.070685 ACAAATTCAAGTCCTTAGACCACC 58.929 41.667 0.00 0.00 44.72 4.61
273 274 6.460953 GCAAACAAATTCAAGTCCTTAGACCA 60.461 38.462 0.00 0.00 44.72 4.02
274 275 5.920840 GCAAACAAATTCAAGTCCTTAGACC 59.079 40.000 0.00 0.00 44.72 3.85
275 276 6.503524 TGCAAACAAATTCAAGTCCTTAGAC 58.496 36.000 0.00 0.00 43.89 2.59
276 277 6.239008 CCTGCAAACAAATTCAAGTCCTTAGA 60.239 38.462 0.00 0.00 0.00 2.10
277 278 5.922544 CCTGCAAACAAATTCAAGTCCTTAG 59.077 40.000 0.00 0.00 0.00 2.18
279 280 4.405358 TCCTGCAAACAAATTCAAGTCCTT 59.595 37.500 0.00 0.00 0.00 3.36
280 281 3.960102 TCCTGCAAACAAATTCAAGTCCT 59.040 39.130 0.00 0.00 0.00 3.85
281 282 4.051237 GTCCTGCAAACAAATTCAAGTCC 58.949 43.478 0.00 0.00 0.00 3.85
282 283 4.681744 TGTCCTGCAAACAAATTCAAGTC 58.318 39.130 0.00 0.00 0.00 3.01
283 284 4.734398 TGTCCTGCAAACAAATTCAAGT 57.266 36.364 0.00 0.00 0.00 3.16
284 285 5.051816 ACATGTCCTGCAAACAAATTCAAG 58.948 37.500 5.75 0.00 0.00 3.02
285 286 5.021033 ACATGTCCTGCAAACAAATTCAA 57.979 34.783 5.75 0.00 0.00 2.69
286 287 4.669206 ACATGTCCTGCAAACAAATTCA 57.331 36.364 5.75 0.00 0.00 2.57
287 288 5.982516 TGTAACATGTCCTGCAAACAAATTC 59.017 36.000 0.00 0.00 0.00 2.17
288 289 5.911752 TGTAACATGTCCTGCAAACAAATT 58.088 33.333 0.00 6.11 0.00 1.82
289 290 5.528043 TGTAACATGTCCTGCAAACAAAT 57.472 34.783 0.00 0.00 0.00 2.32
290 291 4.991153 TGTAACATGTCCTGCAAACAAA 57.009 36.364 0.00 0.00 0.00 2.83
291 292 4.736168 GCTTGTAACATGTCCTGCAAACAA 60.736 41.667 0.00 1.49 0.00 2.83
292 293 3.243367 GCTTGTAACATGTCCTGCAAACA 60.243 43.478 0.00 4.23 0.00 2.83
293 294 3.308530 GCTTGTAACATGTCCTGCAAAC 58.691 45.455 0.00 0.00 0.00 2.93
294 295 2.295909 GGCTTGTAACATGTCCTGCAAA 59.704 45.455 0.00 0.00 0.00 3.68
295 296 1.885887 GGCTTGTAACATGTCCTGCAA 59.114 47.619 0.00 0.00 0.00 4.08
296 297 1.073763 AGGCTTGTAACATGTCCTGCA 59.926 47.619 0.00 0.00 0.00 4.41
298 299 3.937814 TGTAGGCTTGTAACATGTCCTG 58.062 45.455 10.91 0.00 0.00 3.86
299 300 4.634012 TTGTAGGCTTGTAACATGTCCT 57.366 40.909 0.00 2.43 0.00 3.85
301 302 5.878116 TGGTATTGTAGGCTTGTAACATGTC 59.122 40.000 0.00 0.00 0.00 3.06
302 303 5.811190 TGGTATTGTAGGCTTGTAACATGT 58.189 37.500 0.00 0.00 0.00 3.21
303 304 6.751514 TTGGTATTGTAGGCTTGTAACATG 57.248 37.500 0.00 0.00 0.00 3.21
305 306 6.540914 GCTATTGGTATTGTAGGCTTGTAACA 59.459 38.462 0.00 0.00 0.00 2.41
306 307 6.766467 AGCTATTGGTATTGTAGGCTTGTAAC 59.234 38.462 0.00 0.00 0.00 2.50
308 309 6.494666 AGCTATTGGTATTGTAGGCTTGTA 57.505 37.500 0.00 0.00 0.00 2.41
309 310 5.373812 AGCTATTGGTATTGTAGGCTTGT 57.626 39.130 0.00 0.00 0.00 3.16
310 311 6.498304 CAAAGCTATTGGTATTGTAGGCTTG 58.502 40.000 0.00 0.00 38.51 4.01
311 312 5.067805 GCAAAGCTATTGGTATTGTAGGCTT 59.932 40.000 0.00 0.00 39.91 4.35
312 313 4.580580 GCAAAGCTATTGGTATTGTAGGCT 59.419 41.667 9.63 0.00 0.00 4.58
314 315 5.590259 ACAGCAAAGCTATTGGTATTGTAGG 59.410 40.000 11.27 3.33 36.40 3.18
315 316 6.238484 GGACAGCAAAGCTATTGGTATTGTAG 60.238 42.308 11.27 3.84 36.40 2.74
317 318 4.399303 GGACAGCAAAGCTATTGGTATTGT 59.601 41.667 11.27 7.22 36.40 2.71
318 319 4.202050 GGGACAGCAAAGCTATTGGTATTG 60.202 45.833 11.27 1.26 36.40 1.90
319 320 3.954258 GGGACAGCAAAGCTATTGGTATT 59.046 43.478 11.27 4.39 36.40 1.89
320 321 3.053693 TGGGACAGCAAAGCTATTGGTAT 60.054 43.478 11.27 3.09 36.40 2.73
321 322 2.307392 TGGGACAGCAAAGCTATTGGTA 59.693 45.455 11.27 0.00 36.40 3.25
322 323 1.075374 TGGGACAGCAAAGCTATTGGT 59.925 47.619 7.29 7.29 36.40 3.67
323 324 1.838112 TGGGACAGCAAAGCTATTGG 58.162 50.000 9.63 0.00 36.40 3.16
336 337 3.096092 GCCAAACAAATATCCTGGGACA 58.904 45.455 0.00 0.00 0.00 4.02
337 338 3.096092 TGCCAAACAAATATCCTGGGAC 58.904 45.455 0.00 0.00 0.00 4.46
338 339 3.096092 GTGCCAAACAAATATCCTGGGA 58.904 45.455 0.00 0.00 0.00 4.37
340 341 2.830923 TGGTGCCAAACAAATATCCTGG 59.169 45.455 0.00 0.00 0.00 4.45
341 342 3.511146 AGTGGTGCCAAACAAATATCCTG 59.489 43.478 0.00 0.00 0.00 3.86
342 343 3.511146 CAGTGGTGCCAAACAAATATCCT 59.489 43.478 0.00 0.00 0.00 3.24
344 345 3.258123 ACCAGTGGTGCCAAACAAATATC 59.742 43.478 15.86 0.00 32.98 1.63
345 346 3.238597 ACCAGTGGTGCCAAACAAATAT 58.761 40.909 15.86 0.00 32.98 1.28
346 347 2.672098 ACCAGTGGTGCCAAACAAATA 58.328 42.857 15.86 0.00 32.98 1.40
347 348 1.494960 ACCAGTGGTGCCAAACAAAT 58.505 45.000 15.86 0.00 32.98 2.32
348 349 2.983512 ACCAGTGGTGCCAAACAAA 58.016 47.368 15.86 0.00 32.98 2.83
349 350 4.774820 ACCAGTGGTGCCAAACAA 57.225 50.000 15.86 0.00 32.98 2.83
360 361 1.081892 CAAAGCGAGATCCACCAGTG 58.918 55.000 0.00 0.00 0.00 3.66
361 362 0.674895 GCAAAGCGAGATCCACCAGT 60.675 55.000 0.00 0.00 0.00 4.00
362 363 0.392193 AGCAAAGCGAGATCCACCAG 60.392 55.000 0.00 0.00 0.00 4.00
363 364 0.391661 GAGCAAAGCGAGATCCACCA 60.392 55.000 0.00 0.00 0.00 4.17
365 366 1.424493 CCGAGCAAAGCGAGATCCAC 61.424 60.000 0.00 0.00 0.00 4.02
366 367 1.153568 CCGAGCAAAGCGAGATCCA 60.154 57.895 0.00 0.00 0.00 3.41
367 368 2.529619 GCCGAGCAAAGCGAGATCC 61.530 63.158 0.00 0.00 0.00 3.36
368 369 1.361668 TTGCCGAGCAAAGCGAGATC 61.362 55.000 8.58 0.00 45.96 2.75
369 370 1.375908 TTGCCGAGCAAAGCGAGAT 60.376 52.632 8.58 0.00 45.96 2.75
370 371 2.030412 TTGCCGAGCAAAGCGAGA 59.970 55.556 8.58 0.00 45.96 4.04
377 378 3.819564 ATAGTCTATGTTGCCGAGCAA 57.180 42.857 7.15 7.15 46.80 3.91
378 379 4.341235 AGTTATAGTCTATGTTGCCGAGCA 59.659 41.667 2.37 0.00 36.47 4.26
380 381 5.833082 ACAGTTATAGTCTATGTTGCCGAG 58.167 41.667 2.37 0.00 0.00 4.63
381 382 5.847111 ACAGTTATAGTCTATGTTGCCGA 57.153 39.130 2.37 0.00 0.00 5.54
382 383 7.423199 TCTAACAGTTATAGTCTATGTTGCCG 58.577 38.462 2.37 0.00 35.77 5.69
395 396 9.953565 ACAGCAAGGTTAATTCTAACAGTTATA 57.046 29.630 0.00 0.00 39.43 0.98
396 397 8.863872 ACAGCAAGGTTAATTCTAACAGTTAT 57.136 30.769 0.00 0.00 39.43 1.89
397 398 8.685838 AACAGCAAGGTTAATTCTAACAGTTA 57.314 30.769 0.00 0.00 39.43 2.24
398 399 7.582667 AACAGCAAGGTTAATTCTAACAGTT 57.417 32.000 0.00 0.00 39.43 3.16
399 400 7.582667 AAACAGCAAGGTTAATTCTAACAGT 57.417 32.000 0.00 0.00 39.43 3.55
590 591 1.226323 CTCCACGGAACTAGACGCG 60.226 63.158 3.53 3.53 0.00 6.01
684 685 8.734218 TCTATAGATCAACTAAGAGTTCACGT 57.266 34.615 0.00 0.00 36.03 4.49
706 707 7.509546 AGATTGAGTCACTTCCAAGTTTTCTA 58.490 34.615 0.00 0.00 37.08 2.10
939 1679 5.339008 AGAAGACTCACACACACAACTAA 57.661 39.130 0.00 0.00 0.00 2.24
988 1730 3.519107 TCAGTCACCATGGCTCTGAATAA 59.481 43.478 23.00 1.69 33.18 1.40
1487 5449 1.580845 GCACAGCTTGTTGGCGATCT 61.581 55.000 0.00 0.00 37.29 2.75
1635 5597 2.306847 GTTTTGAGCCTTCCCACAAGA 58.693 47.619 0.00 0.00 0.00 3.02
1681 5646 1.964373 CGTAGTTGTTGGCGCCCTT 60.964 57.895 26.77 5.30 0.00 3.95
1827 5799 1.896465 GCAGTCCTTGGAGTAGTGTCT 59.104 52.381 0.00 0.00 0.00 3.41
2004 5978 8.131100 ACATGCATGACACTGCTAAATAAATAC 58.869 33.333 32.75 0.00 42.75 1.89
2215 6238 3.460103 CACAACTGATTTTGCCTGCTTT 58.540 40.909 0.00 0.00 0.00 3.51
2220 6243 1.412079 TGCCACAACTGATTTTGCCT 58.588 45.000 0.00 0.00 0.00 4.75
2499 8164 4.188462 CTCACACACACAACTAAAGGTGA 58.812 43.478 1.15 0.00 38.38 4.02
2505 8170 5.339008 AGAAGACTCACACACACAACTAA 57.661 39.130 0.00 0.00 0.00 2.24
2546 8211 9.555727 AAGAGTTTTTCTATTGCTGTTACTGTA 57.444 29.630 0.00 0.00 34.14 2.74
2570 8235 0.540454 TCAGCTCTGCTCCCATGAAG 59.460 55.000 0.00 0.00 36.40 3.02
2583 8248 6.035866 CACAAGAGAGTCATGTTATTCAGCTC 59.964 42.308 0.00 0.00 0.00 4.09
2601 8266 5.853282 GTGTAGTTTTAATGCAGCACAAGAG 59.147 40.000 0.00 0.00 0.00 2.85
2602 8267 5.298026 TGTGTAGTTTTAATGCAGCACAAGA 59.702 36.000 0.00 0.00 33.47 3.02
2616 8281 7.255139 GCCTGTGTAAAGAAGATGTGTAGTTTT 60.255 37.037 0.00 0.00 0.00 2.43
2621 8286 5.483685 AGCCTGTGTAAAGAAGATGTGTA 57.516 39.130 0.00 0.00 0.00 2.90
2622 8287 4.357918 AGCCTGTGTAAAGAAGATGTGT 57.642 40.909 0.00 0.00 0.00 3.72
2634 8299 4.947388 GGGTTTTGATCAATAGCCTGTGTA 59.053 41.667 29.04 2.97 37.09 2.90
2635 8300 3.763897 GGGTTTTGATCAATAGCCTGTGT 59.236 43.478 29.04 0.00 37.09 3.72
2637 8302 3.016736 CGGGTTTTGATCAATAGCCTGT 58.983 45.455 31.20 0.00 37.63 4.00
2638 8303 3.065371 GTCGGGTTTTGATCAATAGCCTG 59.935 47.826 31.20 25.84 37.63 4.85
2698 8363 5.126869 TGTTTGCTTGTTCAGATGAGGAAAA 59.873 36.000 0.00 0.00 32.54 2.29
2729 8557 0.538584 ATGATCTCCGCTTGCACTGA 59.461 50.000 0.00 0.00 0.00 3.41
2731 8559 2.988010 TTATGATCTCCGCTTGCACT 57.012 45.000 0.00 0.00 0.00 4.40
2741 8569 3.873952 GGTGCAGGTCACTTTATGATCTC 59.126 47.826 0.00 0.00 46.63 2.75
2744 8572 2.308570 TGGGTGCAGGTCACTTTATGAT 59.691 45.455 0.00 0.00 44.98 2.45
2745 8573 1.702401 TGGGTGCAGGTCACTTTATGA 59.298 47.619 0.00 0.00 44.98 2.15
2746 8574 2.086869 CTGGGTGCAGGTCACTTTATG 58.913 52.381 0.00 0.00 44.98 1.90
2748 8576 0.400213 CCTGGGTGCAGGTCACTTTA 59.600 55.000 0.00 0.00 44.98 1.85
2749 8577 1.151450 CCTGGGTGCAGGTCACTTT 59.849 57.895 0.00 0.00 44.98 2.66
2750 8578 1.770110 TCCTGGGTGCAGGTCACTT 60.770 57.895 0.00 0.00 44.98 3.16
2753 8581 3.625897 CGTCCTGGGTGCAGGTCA 61.626 66.667 0.00 0.00 42.79 4.02
2754 8582 4.394712 CCGTCCTGGGTGCAGGTC 62.395 72.222 0.00 0.00 42.79 3.85
2761 8589 3.476031 CTTGCACACCGTCCTGGGT 62.476 63.158 0.00 0.00 44.64 4.51
2762 8590 2.669569 CTTGCACACCGTCCTGGG 60.670 66.667 0.00 0.00 44.64 4.45
2766 8594 2.793278 ATTTTTCTTGCACACCGTCC 57.207 45.000 0.00 0.00 0.00 4.79
2767 8595 9.562583 TTAAATATATTTTTCTTGCACACCGTC 57.437 29.630 15.64 0.00 0.00 4.79
2800 8628 5.826586 ACACGAACTCAGCTATTCTAGATG 58.173 41.667 0.00 0.00 43.25 2.90
2801 8629 7.753309 ATACACGAACTCAGCTATTCTAGAT 57.247 36.000 0.00 0.00 0.00 1.98
2802 8630 8.148999 TCTATACACGAACTCAGCTATTCTAGA 58.851 37.037 0.00 0.00 0.00 2.43
2803 8631 8.312896 TCTATACACGAACTCAGCTATTCTAG 57.687 38.462 0.00 0.00 0.00 2.43
2804 8632 8.850007 ATCTATACACGAACTCAGCTATTCTA 57.150 34.615 0.00 0.00 0.00 2.10
2805 8633 7.753309 ATCTATACACGAACTCAGCTATTCT 57.247 36.000 0.00 0.00 0.00 2.40
2806 8634 8.804688 AAATCTATACACGAACTCAGCTATTC 57.195 34.615 0.00 0.00 0.00 1.75
2809 8637 7.201145 GGAAAATCTATACACGAACTCAGCTA 58.799 38.462 0.00 0.00 0.00 3.32
2811 8639 5.051641 CGGAAAATCTATACACGAACTCAGC 60.052 44.000 0.00 0.00 0.00 4.26
2812 8640 5.459107 CCGGAAAATCTATACACGAACTCAG 59.541 44.000 0.00 0.00 0.00 3.35
2813 8641 5.345702 CCGGAAAATCTATACACGAACTCA 58.654 41.667 0.00 0.00 0.00 3.41
2814 8642 4.208666 GCCGGAAAATCTATACACGAACTC 59.791 45.833 5.05 0.00 0.00 3.01
2815 8643 4.117685 GCCGGAAAATCTATACACGAACT 58.882 43.478 5.05 0.00 0.00 3.01
2816 8644 3.246936 GGCCGGAAAATCTATACACGAAC 59.753 47.826 5.05 0.00 0.00 3.95
2817 8645 3.118702 TGGCCGGAAAATCTATACACGAA 60.119 43.478 5.05 0.00 0.00 3.85
2820 8648 3.560068 CACTGGCCGGAAAATCTATACAC 59.440 47.826 21.41 0.00 0.00 2.90
2821 8649 3.804036 CACTGGCCGGAAAATCTATACA 58.196 45.455 21.41 0.00 0.00 2.29
2822 8650 2.548480 GCACTGGCCGGAAAATCTATAC 59.452 50.000 21.41 0.00 0.00 1.47
2824 8652 1.212935 AGCACTGGCCGGAAAATCTAT 59.787 47.619 21.41 0.00 42.56 1.98
2825 8653 0.618458 AGCACTGGCCGGAAAATCTA 59.382 50.000 21.41 0.00 42.56 1.98
2828 8656 0.318120 CAAAGCACTGGCCGGAAAAT 59.682 50.000 21.41 0.00 42.56 1.82
2829 8657 0.753479 TCAAAGCACTGGCCGGAAAA 60.753 50.000 21.41 0.00 42.56 2.29
2830 8658 0.753479 TTCAAAGCACTGGCCGGAAA 60.753 50.000 21.41 0.00 42.56 3.13
2833 8661 0.318120 ATTTTCAAAGCACTGGCCGG 59.682 50.000 11.02 11.02 42.56 6.13
2834 8662 1.421382 CATTTTCAAAGCACTGGCCG 58.579 50.000 0.00 0.00 42.56 6.13
2835 8663 1.150827 GCATTTTCAAAGCACTGGCC 58.849 50.000 0.00 0.00 42.56 5.36
2836 8664 1.868469 TGCATTTTCAAAGCACTGGC 58.132 45.000 0.00 0.00 41.61 4.85
2837 8665 3.460103 ACTTGCATTTTCAAAGCACTGG 58.540 40.909 0.00 0.00 38.11 4.00
2839 8667 5.163519 ACACTACTTGCATTTTCAAAGCACT 60.164 36.000 0.00 0.00 38.11 4.40
2842 8670 7.083858 TGATACACTACTTGCATTTTCAAAGC 58.916 34.615 0.00 0.00 0.00 3.51
2844 8672 8.165239 ACTGATACACTACTTGCATTTTCAAA 57.835 30.769 0.00 0.00 0.00 2.69
2845 8673 7.744087 ACTGATACACTACTTGCATTTTCAA 57.256 32.000 0.00 0.00 0.00 2.69
2846 8674 8.882736 CATACTGATACACTACTTGCATTTTCA 58.117 33.333 0.00 0.00 0.00 2.69
2847 8675 8.338259 CCATACTGATACACTACTTGCATTTTC 58.662 37.037 0.00 0.00 0.00 2.29
2848 8676 7.201732 GCCATACTGATACACTACTTGCATTTT 60.202 37.037 0.00 0.00 0.00 1.82
2850 8678 5.760253 GCCATACTGATACACTACTTGCATT 59.240 40.000 0.00 0.00 0.00 3.56
2851 8679 5.163311 TGCCATACTGATACACTACTTGCAT 60.163 40.000 0.00 0.00 0.00 3.96
2852 8680 4.161377 TGCCATACTGATACACTACTTGCA 59.839 41.667 0.00 0.00 0.00 4.08
2855 8683 5.069251 GGAGTGCCATACTGATACACTACTT 59.931 44.000 0.00 0.00 41.45 2.24
2856 8684 4.585162 GGAGTGCCATACTGATACACTACT 59.415 45.833 0.00 0.00 41.45 2.57
2857 8685 4.341235 TGGAGTGCCATACTGATACACTAC 59.659 45.833 0.00 0.00 41.45 2.73
2858 8686 4.542697 TGGAGTGCCATACTGATACACTA 58.457 43.478 0.00 0.00 41.45 2.74
2873 8701 2.460757 AAACAATTGCCATGGAGTGC 57.539 45.000 18.40 0.00 0.00 4.40
2874 8702 5.722263 TGAATAAACAATTGCCATGGAGTG 58.278 37.500 18.40 7.72 0.00 3.51
2875 8703 5.999205 TGAATAAACAATTGCCATGGAGT 57.001 34.783 18.40 1.95 0.00 3.85
2876 8704 6.575267 TCATGAATAAACAATTGCCATGGAG 58.425 36.000 18.40 1.26 0.00 3.86
2877 8705 6.541934 TCATGAATAAACAATTGCCATGGA 57.458 33.333 18.40 0.00 0.00 3.41
2905 8733 9.366216 GTTTACTGAAGGATTTTGTTGTTCTTT 57.634 29.630 0.00 0.00 0.00 2.52
2906 8734 7.979537 GGTTTACTGAAGGATTTTGTTGTTCTT 59.020 33.333 0.00 0.00 0.00 2.52
2907 8735 7.417456 GGGTTTACTGAAGGATTTTGTTGTTCT 60.417 37.037 0.00 0.00 0.00 3.01
2909 8737 6.155393 TGGGTTTACTGAAGGATTTTGTTGTT 59.845 34.615 0.00 0.00 0.00 2.83
2910 8738 5.659079 TGGGTTTACTGAAGGATTTTGTTGT 59.341 36.000 0.00 0.00 0.00 3.32
2913 8741 5.659079 TGTTGGGTTTACTGAAGGATTTTGT 59.341 36.000 0.00 0.00 0.00 2.83
2914 8742 6.155475 TGTTGGGTTTACTGAAGGATTTTG 57.845 37.500 0.00 0.00 0.00 2.44
2915 8743 6.800072 TTGTTGGGTTTACTGAAGGATTTT 57.200 33.333 0.00 0.00 0.00 1.82
2916 8744 6.782494 AGATTGTTGGGTTTACTGAAGGATTT 59.218 34.615 0.00 0.00 0.00 2.17
2917 8745 6.314917 AGATTGTTGGGTTTACTGAAGGATT 58.685 36.000 0.00 0.00 0.00 3.01
2918 8746 5.892348 AGATTGTTGGGTTTACTGAAGGAT 58.108 37.500 0.00 0.00 0.00 3.24
2919 8747 5.319043 AGATTGTTGGGTTTACTGAAGGA 57.681 39.130 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.