Multiple sequence alignment - TraesCS3A01G473000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G473000 chr3A 100.000 4135 0 0 1 4135 703909013 703913147 0.000000e+00 7637.0
1 TraesCS3A01G473000 chr3A 89.164 1901 187 11 1119 3009 694976130 694978021 0.000000e+00 2351.0
2 TraesCS3A01G473000 chr3A 91.209 182 14 1 3299 3478 679364149 679364330 3.190000e-61 246.0
3 TraesCS3A01G473000 chr3A 87.879 132 14 1 815 946 34532582 34532453 1.990000e-33 154.0
4 TraesCS3A01G473000 chr3D 94.307 2635 144 5 675 3305 571058476 571061108 0.000000e+00 4030.0
5 TraesCS3A01G473000 chr3D 93.016 2706 161 15 586 3271 571017162 571019859 0.000000e+00 3925.0
6 TraesCS3A01G473000 chr3D 87.606 2122 214 23 810 2922 558565009 558567090 0.000000e+00 2416.0
7 TraesCS3A01G473000 chr3D 93.176 425 28 1 1 425 571015877 571016300 1.260000e-174 623.0
8 TraesCS3A01G473000 chr3D 88.525 427 38 7 1 424 571057812 571058230 1.330000e-139 507.0
9 TraesCS3A01G473000 chr3D 89.423 208 18 3 426 631 571058288 571058493 4.100000e-65 259.0
10 TraesCS3A01G473000 chr3D 94.012 167 9 1 420 586 571016359 571016524 6.860000e-63 252.0
11 TraesCS3A01G473000 chr3D 88.976 127 12 1 815 941 25133068 25132944 5.530000e-34 156.0
12 TraesCS3A01G473000 chr3D 94.845 97 4 1 3482 3577 571061096 571061192 2.570000e-32 150.0
13 TraesCS3A01G473000 chr3B 92.783 2411 153 9 868 3266 757953246 757955647 0.000000e+00 3469.0
14 TraesCS3A01G473000 chr3B 88.933 1780 177 11 1081 2856 741337906 741339669 0.000000e+00 2178.0
15 TraesCS3A01G473000 chr3B 84.471 425 44 7 1 425 757952245 757952647 2.320000e-107 399.0
16 TraesCS3A01G473000 chr3B 89.498 219 23 0 424 642 757952690 757952908 1.130000e-70 278.0
17 TraesCS3A01G473000 chr3B 86.111 144 18 1 803 946 556089611 556089752 1.990000e-33 154.0
18 TraesCS3A01G473000 chr3B 96.970 33 1 0 3482 3514 716740654 716740622 5.770000e-04 56.5
19 TraesCS3A01G473000 chr7B 81.749 526 66 17 3565 4071 179757758 179757244 2.970000e-111 412.0
20 TraesCS3A01G473000 chr7B 81.250 528 68 16 3565 4071 179565976 179566493 8.330000e-107 398.0
21 TraesCS3A01G473000 chr7B 89.691 194 18 1 3298 3489 710310692 710310885 3.190000e-61 246.0
22 TraesCS3A01G473000 chr2A 96.000 175 6 1 3318 3491 16396005 16395831 2.430000e-72 283.0
23 TraesCS3A01G473000 chr7A 97.006 167 4 1 3318 3484 59807122 59806957 3.150000e-71 279.0
24 TraesCS3A01G473000 chr4D 92.935 184 10 2 3301 3481 394138044 394138227 8.810000e-67 265.0
25 TraesCS3A01G473000 chr2B 95.732 164 6 1 3318 3481 693330753 693330915 3.170000e-66 263.0
26 TraesCS3A01G473000 chr2B 92.090 177 14 0 3318 3494 38073809 38073985 2.470000e-62 250.0
27 TraesCS3A01G473000 chr2B 87.273 55 7 0 3741 3795 128267931 128267877 3.450000e-06 63.9
28 TraesCS3A01G473000 chr2D 91.758 182 9 4 3302 3481 10095858 10095681 8.880000e-62 248.0
29 TraesCS3A01G473000 chr7D 90.476 189 15 2 3299 3484 20408820 20408632 3.190000e-61 246.0
30 TraesCS3A01G473000 chr1B 81.938 227 30 9 3580 3798 39686296 39686519 9.130000e-42 182.0
31 TraesCS3A01G473000 chr1B 87.273 55 7 0 3741 3795 137435098 137435152 3.450000e-06 63.9
32 TraesCS3A01G473000 chr1A 87.234 141 16 1 806 946 218526983 218526845 4.280000e-35 159.0
33 TraesCS3A01G473000 chr4B 79.654 231 38 5 3580 3802 117376149 117375920 1.540000e-34 158.0
34 TraesCS3A01G473000 chr4B 87.692 130 14 2 806 935 42400089 42399962 2.570000e-32 150.0
35 TraesCS3A01G473000 chr4B 88.679 53 6 0 3741 3793 180239510 180239562 9.590000e-07 65.8
36 TraesCS3A01G473000 chr1D 85.816 141 18 1 806 946 175819978 175819840 9.260000e-32 148.0
37 TraesCS3A01G473000 chr4A 84.828 145 18 3 803 946 573322301 573322442 4.310000e-30 143.0
38 TraesCS3A01G473000 chr5B 95.745 47 2 0 3749 3795 17936731 17936685 4.430000e-10 76.8
39 TraesCS3A01G473000 chr5B 88.679 53 6 0 3741 3793 399806758 399806706 9.590000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G473000 chr3A 703909013 703913147 4134 False 7637.0 7637 100.000000 1 4135 1 chr3A.!!$F3 4134
1 TraesCS3A01G473000 chr3A 694976130 694978021 1891 False 2351.0 2351 89.164000 1119 3009 1 chr3A.!!$F2 1890
2 TraesCS3A01G473000 chr3D 558565009 558567090 2081 False 2416.0 2416 87.606000 810 2922 1 chr3D.!!$F1 2112
3 TraesCS3A01G473000 chr3D 571015877 571019859 3982 False 1600.0 3925 93.401333 1 3271 3 chr3D.!!$F2 3270
4 TraesCS3A01G473000 chr3D 571057812 571061192 3380 False 1236.5 4030 91.775000 1 3577 4 chr3D.!!$F3 3576
5 TraesCS3A01G473000 chr3B 741337906 741339669 1763 False 2178.0 2178 88.933000 1081 2856 1 chr3B.!!$F2 1775
6 TraesCS3A01G473000 chr3B 757952245 757955647 3402 False 1382.0 3469 88.917333 1 3266 3 chr3B.!!$F3 3265
7 TraesCS3A01G473000 chr7B 179757244 179757758 514 True 412.0 412 81.749000 3565 4071 1 chr7B.!!$R1 506
8 TraesCS3A01G473000 chr7B 179565976 179566493 517 False 398.0 398 81.250000 3565 4071 1 chr7B.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
887 1852 1.708551 TGTAGGGGTAAAGCTTGCCTT 59.291 47.619 16.8 10.11 35.54 4.35 F
1728 2722 3.657398 TTGATTGCTGGGACATCATCT 57.343 42.857 0.0 0.00 38.20 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 2767 1.195448 CGATCATAGCATTGTTCGCCC 59.805 52.381 6.48 0.0 33.59 6.13 R
3653 4660 0.035317 TGGAAGTGCGACAATCAGCT 59.965 50.000 0.00 0.0 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.762043 GCCTTCCTCGCCCTCTCT 60.762 66.667 0.00 0.00 0.00 3.10
33 34 2.171840 CCCTCTCTCGTTCTTTCCTCA 58.828 52.381 0.00 0.00 0.00 3.86
52 53 5.696270 TCCTCATGTTCGATCAATATTTCCG 59.304 40.000 0.00 0.00 0.00 4.30
273 274 4.894784 AGCCTCAAGTCGAATTCAAACTA 58.105 39.130 6.22 0.00 0.00 2.24
349 350 3.738899 GCAGATTATGGCATTTGTGGGTG 60.739 47.826 4.78 0.00 0.00 4.61
385 386 6.959361 AGTGGAATTGATATGTCATTAACGC 58.041 36.000 0.00 0.00 33.56 4.84
406 407 4.233789 GCAGCACATTGGTCGATTAAAAA 58.766 39.130 0.00 0.00 0.00 1.94
451 519 9.046296 GTTGAATTCAAGTCATAGGAACGATAT 57.954 33.333 21.05 0.00 36.39 1.63
533 601 5.825679 GCTATATATTGGGTGTGTTTGGTGA 59.174 40.000 0.00 0.00 0.00 4.02
545 613 3.632145 GTGTTTGGTGAGACAGGAAACAT 59.368 43.478 0.00 0.00 38.43 2.71
569 637 8.464404 CATGATCAGTGACAATTGAAATAGGTT 58.536 33.333 13.59 0.00 0.00 3.50
622 1583 7.706281 ATGCTCTACGAAATAGTTCAGATTG 57.294 36.000 3.55 0.00 32.89 2.67
804 1769 7.751768 AACAGGCTTATGAAATATAGAAGGC 57.248 36.000 0.00 0.00 41.58 4.35
808 1773 6.651225 AGGCTTATGAAATATAGAAGGCGAAC 59.349 38.462 0.00 0.00 44.79 3.95
835 1800 1.880027 CCACTTGTGCCAAGAAGTACC 59.120 52.381 18.22 0.00 37.80 3.34
887 1852 1.708551 TGTAGGGGTAAAGCTTGCCTT 59.291 47.619 16.80 10.11 35.54 4.35
893 1858 4.017867 AGGGGTAAAGCTTGCCTTGTATAA 60.018 41.667 16.80 0.00 35.54 0.98
894 1859 4.893524 GGGGTAAAGCTTGCCTTGTATAAT 59.106 41.667 16.80 0.00 35.54 1.28
952 1925 7.043961 TCTAACATTGAGTATGTCTAGGCTG 57.956 40.000 0.00 0.00 46.75 4.85
1077 2054 6.010850 TGTCTTTCTTTACCTCTCTCTGCTA 58.989 40.000 0.00 0.00 0.00 3.49
1101 2078 7.228314 ACCTGCTAGCTATCGTGAATTAATA 57.772 36.000 17.23 0.00 0.00 0.98
1114 2091 7.036829 TCGTGAATTAATATGACGTTCTTGGA 58.963 34.615 11.42 0.00 0.00 3.53
1131 2108 6.618287 TCTTGGATAACTAAAATGATGGCG 57.382 37.500 0.00 0.00 0.00 5.69
1193 2170 4.563976 CGAATTGGAGAATTTGATGGCAAC 59.436 41.667 0.00 0.00 35.62 4.17
1554 2545 5.709631 TGGATGCTTTGTGCTTGTTTATCTA 59.290 36.000 0.00 0.00 43.37 1.98
1586 2577 6.068931 CGAACGACTTAAATTGGTGTGTTAG 58.931 40.000 0.00 0.00 0.00 2.34
1681 2672 3.696281 TTACGGAGCATGCATCAAATG 57.304 42.857 21.98 4.56 0.00 2.32
1690 2684 3.777478 CATGCATCAAATGAGGGAACAC 58.223 45.455 0.00 0.00 28.54 3.32
1728 2722 3.657398 TTGATTGCTGGGACATCATCT 57.343 42.857 0.00 0.00 38.20 2.90
1773 2767 4.510340 GTGGAACTTGGGCATATTAGTACG 59.490 45.833 0.00 0.00 0.00 3.67
1839 2833 2.562298 TGACCCAATTTCTGAATGGCAC 59.438 45.455 4.79 2.54 0.00 5.01
1927 2923 8.211629 AGAGAATATATGGGTTACTTGTTGGAC 58.788 37.037 0.00 0.00 0.00 4.02
1950 2946 5.589050 ACACGATGCTGTAGATCTACTTACA 59.411 40.000 28.53 23.15 37.00 2.41
2067 3063 5.007626 CCATTTGTGTCATATGTACTTCCGG 59.992 44.000 1.90 0.00 0.00 5.14
2532 3532 1.552578 TCCTACACCACATGCGTACT 58.447 50.000 0.00 0.00 0.00 2.73
2592 3592 6.566197 AAGAATGTGGACTTTGATCAGAAC 57.434 37.500 0.00 0.00 0.00 3.01
2613 3613 5.086104 ACGGTGCACACTATCTTAAATCT 57.914 39.130 20.43 0.00 0.00 2.40
2616 3616 5.005779 CGGTGCACACTATCTTAAATCTGTC 59.994 44.000 20.43 0.00 0.00 3.51
2629 3629 4.406648 AAATCTGTCTGCCGTATGATGA 57.593 40.909 0.00 0.00 0.00 2.92
2712 3712 6.994421 AAAAATCCATGGTTGGTCTTAGTT 57.006 33.333 12.58 0.00 44.06 2.24
2942 3942 7.790782 ATTTATAAACATTGGGTTGGACACT 57.209 32.000 0.00 0.00 40.35 3.55
3014 4017 6.127647 GGAAATCATTTGTTAGTGCCTCATCA 60.128 38.462 0.00 0.00 0.00 3.07
3019 4022 5.437289 TTTGTTAGTGCCTCATCAAGTTG 57.563 39.130 0.00 0.00 0.00 3.16
3081 4085 8.731605 TCTTATTTATGTAGGAGAGCTACATCG 58.268 37.037 0.11 0.00 44.14 3.84
3140 4145 3.518590 AGTAAGGCACGACCGAATAAAG 58.481 45.455 0.00 0.00 46.52 1.85
3176 4181 8.814038 ATATTCTAAGCAACATGAAAAGACCT 57.186 30.769 0.00 0.00 0.00 3.85
3245 4250 2.622452 CCAATGAATGCCCTTCTCACCT 60.622 50.000 0.00 0.00 34.75 4.00
3252 4257 2.352805 CCTTCTCACCTGGCCACC 59.647 66.667 0.00 0.00 0.00 4.61
3293 4298 7.316393 TGATAGCTACAACTTATAAGGGCAT 57.684 36.000 16.73 2.33 0.00 4.40
3294 4299 7.745717 TGATAGCTACAACTTATAAGGGCATT 58.254 34.615 16.73 0.00 0.00 3.56
3295 4300 8.217799 TGATAGCTACAACTTATAAGGGCATTT 58.782 33.333 16.73 0.00 0.00 2.32
3296 4301 9.720769 GATAGCTACAACTTATAAGGGCATTTA 57.279 33.333 16.73 2.25 0.00 1.40
3303 4308 9.654919 ACAACTTATAAGGGCATTTATAACCAT 57.345 29.630 16.73 0.00 33.89 3.55
3306 4311 9.654919 ACTTATAAGGGCATTTATAACCATTGT 57.345 29.630 16.73 0.00 33.89 2.71
3324 4329 7.639945 ACCATTGTTTTAAATCGAGCTATAGC 58.360 34.615 17.33 17.33 42.49 2.97
3325 4330 7.282224 ACCATTGTTTTAAATCGAGCTATAGCA 59.718 33.333 26.07 6.60 45.16 3.49
3326 4331 7.587757 CCATTGTTTTAAATCGAGCTATAGCAC 59.412 37.037 26.07 18.89 45.16 4.40
3342 4347 7.812309 CTATAGCACGCTATAGCATTTACAA 57.188 36.000 25.42 3.88 46.26 2.41
3343 4348 8.239681 CTATAGCACGCTATAGCATTTACAAA 57.760 34.615 25.42 2.45 46.26 2.83
3344 4349 5.811399 AGCACGCTATAGCATTTACAAAA 57.189 34.783 23.99 0.00 42.21 2.44
3345 4350 5.810525 AGCACGCTATAGCATTTACAAAAG 58.189 37.500 23.99 6.48 42.21 2.27
3346 4351 4.970003 GCACGCTATAGCATTTACAAAAGG 59.030 41.667 23.99 5.98 42.21 3.11
3347 4352 5.448632 GCACGCTATAGCATTTACAAAAGGT 60.449 40.000 23.99 6.60 42.21 3.50
3348 4353 6.192360 CACGCTATAGCATTTACAAAAGGTC 58.808 40.000 23.99 0.00 42.21 3.85
3349 4354 6.037172 CACGCTATAGCATTTACAAAAGGTCT 59.963 38.462 23.99 0.00 42.21 3.85
3350 4355 6.598064 ACGCTATAGCATTTACAAAAGGTCTT 59.402 34.615 23.99 0.00 42.21 3.01
3351 4356 6.907212 CGCTATAGCATTTACAAAAGGTCTTG 59.093 38.462 23.99 0.00 42.21 3.02
3352 4357 6.693113 GCTATAGCATTTACAAAAGGTCTTGC 59.307 38.462 20.01 0.00 41.59 4.01
3353 4358 3.900941 AGCATTTACAAAAGGTCTTGCG 58.099 40.909 0.00 0.00 35.26 4.85
3354 4359 2.408368 GCATTTACAAAAGGTCTTGCGC 59.592 45.455 0.00 0.00 0.00 6.09
3355 4360 3.857010 GCATTTACAAAAGGTCTTGCGCT 60.857 43.478 9.73 0.00 0.00 5.92
3356 4361 4.614993 GCATTTACAAAAGGTCTTGCGCTA 60.615 41.667 9.73 0.00 0.00 4.26
3357 4362 5.457140 CATTTACAAAAGGTCTTGCGCTAA 58.543 37.500 9.73 0.00 0.00 3.09
3358 4363 4.742438 TTACAAAAGGTCTTGCGCTAAG 57.258 40.909 9.73 11.02 37.76 2.18
3359 4364 2.846193 ACAAAAGGTCTTGCGCTAAGA 58.154 42.857 9.73 13.31 43.01 2.10
3360 4365 2.808543 ACAAAAGGTCTTGCGCTAAGAG 59.191 45.455 18.44 10.73 45.71 2.85
3361 4366 3.067106 CAAAAGGTCTTGCGCTAAGAGA 58.933 45.455 18.44 9.99 45.71 3.10
3362 4367 2.371910 AAGGTCTTGCGCTAAGAGAC 57.628 50.000 18.44 18.59 45.71 3.36
3363 4368 1.257743 AGGTCTTGCGCTAAGAGACA 58.742 50.000 24.20 5.74 45.71 3.41
3364 4369 1.827969 AGGTCTTGCGCTAAGAGACAT 59.172 47.619 24.20 18.84 45.71 3.06
3365 4370 2.234908 AGGTCTTGCGCTAAGAGACATT 59.765 45.455 24.20 14.78 45.71 2.71
3366 4371 2.349886 GGTCTTGCGCTAAGAGACATTG 59.650 50.000 24.20 0.79 45.71 2.82
3367 4372 2.349886 GTCTTGCGCTAAGAGACATTGG 59.650 50.000 18.44 0.00 45.71 3.16
3368 4373 2.028112 TCTTGCGCTAAGAGACATTGGT 60.028 45.455 9.73 0.00 40.43 3.67
3369 4374 2.010145 TGCGCTAAGAGACATTGGTC 57.990 50.000 9.73 0.00 44.66 4.02
3370 4375 1.291132 GCGCTAAGAGACATTGGTCC 58.709 55.000 0.00 0.00 45.48 4.46
3371 4376 1.405526 GCGCTAAGAGACATTGGTCCA 60.406 52.381 0.00 0.00 45.48 4.02
3372 4377 2.935238 GCGCTAAGAGACATTGGTCCAA 60.935 50.000 6.80 6.80 45.48 3.53
3373 4378 3.334691 CGCTAAGAGACATTGGTCCAAA 58.665 45.455 8.75 0.00 45.48 3.28
3374 4379 3.125316 CGCTAAGAGACATTGGTCCAAAC 59.875 47.826 8.75 3.71 45.48 2.93
3375 4380 4.072131 GCTAAGAGACATTGGTCCAAACA 58.928 43.478 8.75 0.00 45.48 2.83
3376 4381 4.518970 GCTAAGAGACATTGGTCCAAACAA 59.481 41.667 8.75 0.00 45.48 2.83
3377 4382 5.009610 GCTAAGAGACATTGGTCCAAACAAA 59.990 40.000 8.75 0.00 45.48 2.83
3378 4383 6.294731 GCTAAGAGACATTGGTCCAAACAAAT 60.295 38.462 8.75 0.00 45.48 2.32
3380 4385 5.139727 AGAGACATTGGTCCAAACAAATGA 58.860 37.500 8.75 0.00 45.97 2.57
3381 4386 5.598005 AGAGACATTGGTCCAAACAAATGAA 59.402 36.000 8.75 0.00 45.97 2.57
3382 4387 6.268387 AGAGACATTGGTCCAAACAAATGAAT 59.732 34.615 8.75 0.00 45.97 2.57
3383 4388 7.451255 AGAGACATTGGTCCAAACAAATGAATA 59.549 33.333 8.75 0.00 45.97 1.75
3384 4389 7.961351 AGACATTGGTCCAAACAAATGAATAA 58.039 30.769 8.75 0.00 45.97 1.40
3385 4390 8.428063 AGACATTGGTCCAAACAAATGAATAAA 58.572 29.630 8.75 0.00 45.97 1.40
3386 4391 8.376889 ACATTGGTCCAAACAAATGAATAAAC 57.623 30.769 8.75 0.00 45.97 2.01
3387 4392 7.989741 ACATTGGTCCAAACAAATGAATAAACA 59.010 29.630 8.75 0.00 45.97 2.83
3388 4393 9.001542 CATTGGTCCAAACAAATGAATAAACAT 57.998 29.630 8.75 0.00 45.97 2.71
3389 4394 8.970859 TTGGTCCAAACAAATGAATAAACATT 57.029 26.923 0.40 0.00 41.43 2.71
3390 4395 8.970859 TGGTCCAAACAAATGAATAAACATTT 57.029 26.923 0.00 0.00 46.85 2.32
3391 4396 9.401058 TGGTCCAAACAAATGAATAAACATTTT 57.599 25.926 0.00 0.00 44.63 1.82
3403 4408 9.801873 ATGAATAAACATTTTAAATAGCGTGCT 57.198 25.926 0.00 0.00 0.00 4.40
3408 4413 8.782533 AAACATTTTAAATAGCGTGCTATAGC 57.217 30.769 18.18 18.18 38.20 2.97
3409 4414 7.730364 ACATTTTAAATAGCGTGCTATAGCT 57.270 32.000 24.61 7.81 46.53 3.32
3410 4415 7.797819 ACATTTTAAATAGCGTGCTATAGCTC 58.202 34.615 24.61 19.83 43.44 4.09
3411 4416 6.780706 TTTTAAATAGCGTGCTATAGCTCC 57.219 37.500 24.61 14.25 43.44 4.70
3412 4417 2.638556 AATAGCGTGCTATAGCTCCG 57.361 50.000 24.61 24.28 43.44 4.63
3423 4428 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
3424 4429 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
3425 4430 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
3426 4431 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
3427 4432 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
3444 4449 5.638660 GCTATAGCGTTTACAAGAGGTTC 57.361 43.478 9.40 0.00 0.00 3.62
3445 4450 5.107133 GCTATAGCGTTTACAAGAGGTTCA 58.893 41.667 9.40 0.00 0.00 3.18
3446 4451 5.005490 GCTATAGCGTTTACAAGAGGTTCAC 59.995 44.000 9.40 0.00 0.00 3.18
3447 4452 2.490991 AGCGTTTACAAGAGGTTCACC 58.509 47.619 0.00 0.00 0.00 4.02
3448 4453 1.193874 GCGTTTACAAGAGGTTCACCG 59.806 52.381 0.00 0.00 42.08 4.94
3449 4454 1.193874 CGTTTACAAGAGGTTCACCGC 59.806 52.381 0.00 0.00 42.08 5.68
3451 4456 3.656559 GTTTACAAGAGGTTCACCGCTA 58.343 45.455 2.29 0.00 45.67 4.26
3452 4457 4.060205 GTTTACAAGAGGTTCACCGCTAA 58.940 43.478 2.29 0.00 45.67 3.09
3453 4458 2.457366 ACAAGAGGTTCACCGCTAAG 57.543 50.000 2.29 2.11 45.67 2.18
3454 4459 1.968493 ACAAGAGGTTCACCGCTAAGA 59.032 47.619 2.29 0.00 45.67 2.10
3455 4460 2.028930 ACAAGAGGTTCACCGCTAAGAG 60.029 50.000 2.29 0.00 45.67 2.85
3456 4461 1.187087 AGAGGTTCACCGCTAAGAGG 58.813 55.000 0.00 0.00 44.55 3.69
3457 4462 0.460459 GAGGTTCACCGCTAAGAGGC 60.460 60.000 0.00 0.00 42.08 4.70
3458 4463 0.905337 AGGTTCACCGCTAAGAGGCT 60.905 55.000 0.00 0.00 42.08 4.58
3459 4464 0.036294 GGTTCACCGCTAAGAGGCTT 60.036 55.000 0.00 0.00 0.00 4.35
3460 4465 1.206371 GGTTCACCGCTAAGAGGCTTA 59.794 52.381 0.00 0.00 0.00 3.09
3461 4466 2.541556 GTTCACCGCTAAGAGGCTTAG 58.458 52.381 9.30 9.30 0.00 2.18
3462 4467 0.460311 TCACCGCTAAGAGGCTTAGC 59.540 55.000 22.75 22.75 42.82 3.09
3465 4470 3.619054 GCTAAGAGGCTTAGCGCG 58.381 61.111 19.61 0.00 38.12 6.86
3466 4471 2.590401 GCTAAGAGGCTTAGCGCGC 61.590 63.158 26.66 26.66 38.12 6.86
3467 4472 1.066587 CTAAGAGGCTTAGCGCGCT 59.933 57.895 38.01 38.01 40.44 5.92
3468 4473 0.311165 CTAAGAGGCTTAGCGCGCTA 59.689 55.000 35.48 35.48 40.44 4.26
3469 4474 0.959553 TAAGAGGCTTAGCGCGCTAT 59.040 50.000 38.51 25.42 40.44 2.97
3470 4475 0.105039 AAGAGGCTTAGCGCGCTATT 59.895 50.000 38.51 26.01 40.44 1.73
3471 4476 0.105039 AGAGGCTTAGCGCGCTATTT 59.895 50.000 38.51 24.06 40.44 1.40
3472 4477 1.340248 AGAGGCTTAGCGCGCTATTTA 59.660 47.619 38.51 24.25 40.44 1.40
3473 4478 2.132762 GAGGCTTAGCGCGCTATTTAA 58.867 47.619 38.51 25.53 40.44 1.52
3474 4479 2.542595 GAGGCTTAGCGCGCTATTTAAA 59.457 45.455 38.51 25.16 40.44 1.52
3475 4480 2.940410 AGGCTTAGCGCGCTATTTAAAA 59.060 40.909 38.51 24.43 40.44 1.52
3476 4481 3.033873 GGCTTAGCGCGCTATTTAAAAC 58.966 45.455 38.51 21.47 40.44 2.43
3477 4482 3.242641 GGCTTAGCGCGCTATTTAAAACT 60.243 43.478 38.51 14.50 40.44 2.66
3478 4483 4.025480 GGCTTAGCGCGCTATTTAAAACTA 60.025 41.667 38.51 20.65 40.44 2.24
3479 4484 5.333875 GGCTTAGCGCGCTATTTAAAACTAT 60.334 40.000 38.51 13.72 40.44 2.12
3480 4485 5.560378 GCTTAGCGCGCTATTTAAAACTATG 59.440 40.000 38.51 19.33 0.00 2.23
3517 4522 6.322201 TCCCCTAAAAGTTAGTGTAGTATCCG 59.678 42.308 0.00 0.00 0.00 4.18
3566 4572 8.859236 ATCCCTAAAGTTAGTGGAGTAAAAAC 57.141 34.615 11.51 0.00 35.24 2.43
3585 4591 6.918892 AAAACAAAATTGTCTTGTTAGGCC 57.081 33.333 7.06 0.00 44.25 5.19
3596 4603 8.825667 TTGTCTTGTTAGGCCAAAATTAAATC 57.174 30.769 5.01 0.00 0.00 2.17
3604 4611 9.430623 GTTAGGCCAAAATTAAATCTGCTTAAA 57.569 29.630 5.01 0.00 0.00 1.52
3642 4649 1.080995 GCACACGCCAACTGCAAAAA 61.081 50.000 0.00 0.00 41.33 1.94
3668 4681 1.301953 TGCAGCTGATTGTCGCACT 60.302 52.632 20.43 0.00 0.00 4.40
3670 4683 0.179205 GCAGCTGATTGTCGCACTTC 60.179 55.000 20.43 0.00 0.00 3.01
3684 4697 2.998670 CGCACTTCCATCTATGCATAGG 59.001 50.000 29.02 17.12 37.97 2.57
3687 4700 4.503817 GCACTTCCATCTATGCATAGGACA 60.504 45.833 29.02 13.93 38.00 4.02
3699 4712 8.049117 TCTATGCATAGGACAGAAGACAAATTT 58.951 33.333 29.02 0.00 0.00 1.82
3723 4736 8.922058 TTTAATTACCGAACTGACTACTCATC 57.078 34.615 0.00 0.00 0.00 2.92
3725 4738 5.814764 TTACCGAACTGACTACTCATCTC 57.185 43.478 0.00 0.00 0.00 2.75
3736 4749 5.417266 TGACTACTCATCTCTCCTCAAACTG 59.583 44.000 0.00 0.00 0.00 3.16
3772 4785 3.659195 TGATGATGGGCATATCTTTCCCT 59.341 43.478 0.00 0.00 40.69 4.20
3777 4790 5.312974 TGATGGGCATATCTTTCCCTGATTA 59.687 40.000 0.00 0.00 40.69 1.75
3779 4792 5.634118 TGGGCATATCTTTCCCTGATTAAG 58.366 41.667 0.00 0.00 40.69 1.85
3782 4795 5.942826 GGCATATCTTTCCCTGATTAAGAGG 59.057 44.000 0.00 0.00 31.98 3.69
3795 4808 6.587608 CCTGATTAAGAGGTTCAAATTGTTGC 59.412 38.462 0.00 0.00 34.50 4.17
3796 4809 7.048629 TGATTAAGAGGTTCAAATTGTTGCA 57.951 32.000 0.00 0.00 34.50 4.08
3799 4812 8.729805 ATTAAGAGGTTCAAATTGTTGCAAAA 57.270 26.923 0.00 0.00 34.50 2.44
3800 4813 6.667007 AAGAGGTTCAAATTGTTGCAAAAG 57.333 33.333 0.00 0.00 34.50 2.27
3806 4819 7.174772 AGGTTCAAATTGTTGCAAAAGAAAAGT 59.825 29.630 0.00 0.00 34.50 2.66
3813 4826 9.558648 AATTGTTGCAAAAGAAAAGTGAAAATC 57.441 25.926 0.00 0.00 0.00 2.17
3817 4830 6.096036 TGCAAAAGAAAAGTGAAAATCGACA 58.904 32.000 0.00 0.00 0.00 4.35
3829 4842 4.819088 TGAAAATCGACACACCTGATTGAA 59.181 37.500 0.00 0.00 32.91 2.69
3838 4851 3.250762 CACACCTGATTGAACATGAACGT 59.749 43.478 0.00 0.00 0.00 3.99
3843 4856 4.023279 CCTGATTGAACATGAACGTCCAAA 60.023 41.667 0.00 0.00 0.00 3.28
3870 4884 6.485830 ACAGCTGCAAATACTCTAGGATAA 57.514 37.500 15.27 0.00 0.00 1.75
3883 4897 2.062971 AGGATAAGGGCACAAGCATG 57.937 50.000 0.00 0.00 44.61 4.06
3884 4898 1.035139 GGATAAGGGCACAAGCATGG 58.965 55.000 0.00 0.00 44.61 3.66
3885 4899 0.386838 GATAAGGGCACAAGCATGGC 59.613 55.000 0.00 0.00 44.61 4.40
3895 4911 0.810648 CAAGCATGGCGTGGTACATT 59.189 50.000 12.40 0.00 44.52 2.71
3920 4936 0.604578 TCCAGTTACGGCAGGTGTAC 59.395 55.000 0.00 0.00 0.00 2.90
3929 4945 2.754552 ACGGCAGGTGTACGAACTTATA 59.245 45.455 0.00 0.00 0.00 0.98
3930 4946 3.193267 ACGGCAGGTGTACGAACTTATAA 59.807 43.478 0.00 0.00 0.00 0.98
3932 4948 4.807304 CGGCAGGTGTACGAACTTATAATT 59.193 41.667 0.00 0.00 0.00 1.40
3933 4949 5.051240 CGGCAGGTGTACGAACTTATAATTC 60.051 44.000 0.00 0.00 0.00 2.17
3934 4950 6.047231 GGCAGGTGTACGAACTTATAATTCT 58.953 40.000 0.00 0.00 0.00 2.40
3971 4991 8.189119 ACTGGCCAATCTAAAACAAATTTCTA 57.811 30.769 7.01 0.00 32.27 2.10
3973 4993 7.382898 TGGCCAATCTAAAACAAATTTCTACC 58.617 34.615 0.61 0.00 32.27 3.18
3978 4998 9.503427 CAATCTAAAACAAATTTCTACCGATCC 57.497 33.333 0.00 0.00 32.27 3.36
3993 5013 0.462759 GATCCAGAAAGCCCGACCAG 60.463 60.000 0.00 0.00 0.00 4.00
3995 5015 1.376037 CCAGAAAGCCCGACCAGTC 60.376 63.158 0.00 0.00 0.00 3.51
4001 5021 0.250338 AAGCCCGACCAGTCTGAAAC 60.250 55.000 0.00 0.00 0.00 2.78
4054 5078 6.285990 TCAGTACAAAGGGAGTTCTGTTTAC 58.714 40.000 0.00 0.00 36.27 2.01
4057 5081 5.830000 ACAAAGGGAGTTCTGTTTACAAC 57.170 39.130 0.00 0.00 0.00 3.32
4066 5090 4.036734 AGTTCTGTTTACAACTGCACATGG 59.963 41.667 0.00 0.00 31.42 3.66
4071 5095 5.105752 TGTTTACAACTGCACATGGAAAAC 58.894 37.500 6.05 10.94 31.47 2.43
4072 5096 2.888834 ACAACTGCACATGGAAAACC 57.111 45.000 0.00 0.00 0.00 3.27
4073 5097 1.412343 ACAACTGCACATGGAAAACCC 59.588 47.619 0.00 0.00 0.00 4.11
4074 5098 1.688197 CAACTGCACATGGAAAACCCT 59.312 47.619 0.00 0.00 35.38 4.34
4075 5099 2.086610 ACTGCACATGGAAAACCCTT 57.913 45.000 0.00 0.00 35.38 3.95
4076 5100 2.397597 ACTGCACATGGAAAACCCTTT 58.602 42.857 0.00 0.00 35.38 3.11
4077 5101 2.365293 ACTGCACATGGAAAACCCTTTC 59.635 45.455 0.00 0.00 40.31 2.62
4078 5102 2.629617 CTGCACATGGAAAACCCTTTCT 59.370 45.455 0.00 0.00 40.76 2.52
4079 5103 3.037549 TGCACATGGAAAACCCTTTCTT 58.962 40.909 0.00 0.00 40.76 2.52
4080 5104 3.069443 TGCACATGGAAAACCCTTTCTTC 59.931 43.478 0.00 0.00 40.76 2.87
4081 5105 3.321968 GCACATGGAAAACCCTTTCTTCT 59.678 43.478 0.00 0.00 40.76 2.85
4082 5106 4.202253 GCACATGGAAAACCCTTTCTTCTT 60.202 41.667 0.00 0.00 40.76 2.52
4083 5107 5.532557 CACATGGAAAACCCTTTCTTCTTC 58.467 41.667 0.00 0.00 40.76 2.87
4084 5108 5.302823 CACATGGAAAACCCTTTCTTCTTCT 59.697 40.000 0.00 0.00 40.76 2.85
4085 5109 5.302823 ACATGGAAAACCCTTTCTTCTTCTG 59.697 40.000 0.00 0.00 40.76 3.02
4086 5110 5.124036 TGGAAAACCCTTTCTTCTTCTGA 57.876 39.130 0.00 0.00 40.76 3.27
4087 5111 5.515106 TGGAAAACCCTTTCTTCTTCTGAA 58.485 37.500 0.00 0.00 40.76 3.02
4088 5112 6.136155 TGGAAAACCCTTTCTTCTTCTGAAT 58.864 36.000 0.00 0.00 40.76 2.57
4089 5113 6.611236 TGGAAAACCCTTTCTTCTTCTGAATT 59.389 34.615 0.00 0.00 40.76 2.17
4090 5114 7.148641 GGAAAACCCTTTCTTCTTCTGAATTC 58.851 38.462 0.00 0.00 40.76 2.17
4091 5115 7.201911 GGAAAACCCTTTCTTCTTCTGAATTCA 60.202 37.037 8.12 8.12 40.76 2.57
4092 5116 6.641169 AACCCTTTCTTCTTCTGAATTCAC 57.359 37.500 3.38 0.00 0.00 3.18
4093 5117 5.694995 ACCCTTTCTTCTTCTGAATTCACA 58.305 37.500 3.38 0.00 0.00 3.58
4094 5118 6.129179 ACCCTTTCTTCTTCTGAATTCACAA 58.871 36.000 3.38 0.00 0.00 3.33
4095 5119 6.779539 ACCCTTTCTTCTTCTGAATTCACAAT 59.220 34.615 3.38 0.00 0.00 2.71
4096 5120 7.288621 ACCCTTTCTTCTTCTGAATTCACAATT 59.711 33.333 3.38 0.00 0.00 2.32
4097 5121 7.811713 CCCTTTCTTCTTCTGAATTCACAATTC 59.188 37.037 3.38 2.55 45.86 2.17
4108 5132 6.169419 GAATTCACAATTCAGTGATCGTCA 57.831 37.500 0.00 0.00 46.90 4.35
4109 5133 6.748333 AATTCACAATTCAGTGATCGTCAT 57.252 33.333 0.00 0.00 46.90 3.06
4110 5134 7.848223 AATTCACAATTCAGTGATCGTCATA 57.152 32.000 0.00 0.00 46.90 2.15
4111 5135 6.647212 TTCACAATTCAGTGATCGTCATAC 57.353 37.500 0.00 0.00 46.90 2.39
4112 5136 5.719173 TCACAATTCAGTGATCGTCATACA 58.281 37.500 0.00 0.00 43.18 2.29
4113 5137 5.576774 TCACAATTCAGTGATCGTCATACAC 59.423 40.000 0.00 0.00 43.18 2.90
4114 5138 5.348451 CACAATTCAGTGATCGTCATACACA 59.652 40.000 0.00 0.00 42.05 3.72
4115 5139 6.036408 CACAATTCAGTGATCGTCATACACAT 59.964 38.462 0.00 0.00 42.05 3.21
4116 5140 6.595326 ACAATTCAGTGATCGTCATACACATT 59.405 34.615 0.00 0.00 37.05 2.71
4117 5141 7.119699 ACAATTCAGTGATCGTCATACACATTT 59.880 33.333 0.00 0.00 37.05 2.32
4118 5142 6.407475 TTCAGTGATCGTCATACACATTTG 57.593 37.500 0.00 0.00 37.05 2.32
4119 5143 4.329801 TCAGTGATCGTCATACACATTTGC 59.670 41.667 0.00 0.00 37.05 3.68
4120 5144 4.330894 CAGTGATCGTCATACACATTTGCT 59.669 41.667 0.00 0.00 37.05 3.91
4121 5145 4.568359 AGTGATCGTCATACACATTTGCTC 59.432 41.667 0.00 0.00 37.05 4.26
4122 5146 4.568359 GTGATCGTCATACACATTTGCTCT 59.432 41.667 0.00 0.00 35.06 4.09
4123 5147 4.805719 TGATCGTCATACACATTTGCTCTC 59.194 41.667 0.00 0.00 0.00 3.20
4124 5148 4.456280 TCGTCATACACATTTGCTCTCT 57.544 40.909 0.00 0.00 0.00 3.10
4125 5149 4.820897 TCGTCATACACATTTGCTCTCTT 58.179 39.130 0.00 0.00 0.00 2.85
4126 5150 4.627035 TCGTCATACACATTTGCTCTCTTG 59.373 41.667 0.00 0.00 0.00 3.02
4127 5151 4.627035 CGTCATACACATTTGCTCTCTTGA 59.373 41.667 0.00 0.00 0.00 3.02
4128 5152 5.120674 CGTCATACACATTTGCTCTCTTGAA 59.879 40.000 0.00 0.00 0.00 2.69
4129 5153 6.541086 GTCATACACATTTGCTCTCTTGAAG 58.459 40.000 0.00 0.00 0.00 3.02
4130 5154 3.911661 ACACATTTGCTCTCTTGAAGC 57.088 42.857 0.00 0.00 0.00 3.86
4131 5155 2.555757 ACACATTTGCTCTCTTGAAGCC 59.444 45.455 0.00 0.00 0.00 4.35
4132 5156 2.555325 CACATTTGCTCTCTTGAAGCCA 59.445 45.455 0.00 0.00 0.00 4.75
4133 5157 3.005050 CACATTTGCTCTCTTGAAGCCAA 59.995 43.478 0.00 0.00 0.00 4.52
4134 5158 3.830755 ACATTTGCTCTCTTGAAGCCAAT 59.169 39.130 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.653539 TCGAACATGAGGAAAGAACGA 57.346 42.857 0.00 0.00 0.00 3.85
33 34 5.286438 TCGTCGGAAATATTGATCGAACAT 58.714 37.500 0.00 0.00 0.00 2.71
65 66 1.894282 TTTCCATCACAACGCGGCA 60.894 52.632 12.47 0.00 0.00 5.69
70 71 1.209127 GCCGGTTTCCATCACAACG 59.791 57.895 1.90 0.00 0.00 4.10
121 122 3.349927 CCCAGAGCAACATTTGAGATCA 58.650 45.455 0.00 0.00 0.00 2.92
246 247 3.130516 TGAATTCGACTTGAGGCTATCGT 59.869 43.478 0.04 0.00 36.03 3.73
273 274 7.453393 TCACCAGACTGATATTTTTCTCACTT 58.547 34.615 3.32 0.00 0.00 3.16
306 307 9.643693 ATCTGCGAGTGAAAAATGAAAAATATT 57.356 25.926 0.00 0.00 0.00 1.28
310 311 8.914654 CATAATCTGCGAGTGAAAAATGAAAAA 58.085 29.630 0.00 0.00 0.00 1.94
316 317 4.398988 TGCCATAATCTGCGAGTGAAAAAT 59.601 37.500 0.00 0.00 0.00 1.82
322 323 3.065786 ACAAATGCCATAATCTGCGAGTG 59.934 43.478 0.00 0.00 0.00 3.51
349 350 4.380531 TCAATTCCACTCACTGTCTGAAC 58.619 43.478 0.00 0.00 0.00 3.18
385 386 9.729023 TTATATTTTTAATCGACCAATGTGCTG 57.271 29.630 0.00 0.00 0.00 4.41
533 601 4.040829 TGTCACTGATCATGTTTCCTGTCT 59.959 41.667 0.00 0.00 0.00 3.41
545 613 8.946085 GTAACCTATTTCAATTGTCACTGATCA 58.054 33.333 5.13 0.00 0.00 2.92
622 1583 6.927294 AGCATAGTATAAAACCAGCTGAAC 57.073 37.500 17.39 1.59 31.23 3.18
804 1769 1.798813 GCACAAGTGGGAAGTAGTTCG 59.201 52.381 4.23 0.00 32.92 3.95
887 1852 5.550403 GGGTTCTGGGGAAGGATATTATACA 59.450 44.000 0.00 0.00 31.46 2.29
893 1858 2.136026 GTGGGTTCTGGGGAAGGATAT 58.864 52.381 0.00 0.00 31.46 1.63
894 1859 1.591768 GTGGGTTCTGGGGAAGGATA 58.408 55.000 0.00 0.00 31.46 2.59
1052 2029 5.305644 AGCAGAGAGAGGTAAAGAAAGACAA 59.694 40.000 0.00 0.00 0.00 3.18
1056 2033 5.420739 AGGTAGCAGAGAGAGGTAAAGAAAG 59.579 44.000 0.00 0.00 0.00 2.62
1077 2054 5.531122 TTAATTCACGATAGCTAGCAGGT 57.469 39.130 18.83 5.83 42.67 4.00
1101 2078 8.786826 TCATTTTAGTTATCCAAGAACGTCAT 57.213 30.769 0.00 0.00 31.85 3.06
1114 2091 4.644685 ACCTTGCGCCATCATTTTAGTTAT 59.355 37.500 4.18 0.00 0.00 1.89
1131 2108 2.167281 TGCTCTACTCATCTCACCTTGC 59.833 50.000 0.00 0.00 0.00 4.01
1233 2210 1.769733 TGCACAATTTTCTTCGCTGC 58.230 45.000 0.00 0.00 0.00 5.25
1302 2279 6.548321 ACCTATGGACATAACTTTTGGTTCA 58.452 36.000 0.00 0.00 39.17 3.18
1554 2545 3.457610 TTTAAGTCGTTCGTTCCACCT 57.542 42.857 0.00 0.00 0.00 4.00
1586 2577 3.753272 ACTACCACATGCATTCTGTTCAC 59.247 43.478 0.00 0.00 0.00 3.18
1681 2672 3.382048 ACTTTCAGTACGTGTTCCCTC 57.618 47.619 0.00 0.00 0.00 4.30
1690 2684 7.223582 AGCAATCAATCTCATACTTTCAGTACG 59.776 37.037 0.00 0.00 32.84 3.67
1728 2722 7.284261 TCCACACTTTCTGTTGAACATAAATCA 59.716 33.333 8.93 0.00 31.02 2.57
1747 2741 3.456380 AATATGCCCAAGTTCCACACT 57.544 42.857 0.00 0.00 37.30 3.55
1760 2754 2.064014 GTTCGCCCGTACTAATATGCC 58.936 52.381 0.00 0.00 0.00 4.40
1773 2767 1.195448 CGATCATAGCATTGTTCGCCC 59.805 52.381 6.48 0.00 33.59 6.13
1839 2833 1.355210 GCGAAATACATGGGCGTGG 59.645 57.895 0.00 0.00 0.00 4.94
1850 2844 4.978083 AGAAGAAGTAGGTCGCGAAATA 57.022 40.909 12.06 3.48 0.00 1.40
1927 2923 6.017852 TCTGTAAGTAGATCTACAGCATCGTG 60.018 42.308 29.85 14.89 39.61 4.35
1950 2946 9.955102 AGTTCTAAATATTTACGGACCTTTTCT 57.045 29.630 3.71 0.00 0.00 2.52
2067 3063 2.627699 TGGTTGAATCCTTTGTTGAGGC 59.372 45.455 0.00 0.00 36.71 4.70
2532 3532 6.823182 TGAAAAGAGTTGACACTTCTTCATCA 59.177 34.615 11.08 6.72 31.22 3.07
2592 3592 4.870426 ACAGATTTAAGATAGTGTGCACCG 59.130 41.667 15.69 0.00 0.00 4.94
2613 3613 3.195610 ACTCTTTCATCATACGGCAGACA 59.804 43.478 0.00 0.00 0.00 3.41
2616 3616 7.814587 TGATAATACTCTTTCATCATACGGCAG 59.185 37.037 0.00 0.00 0.00 4.85
2647 3647 4.446167 CCAGGCCATCCATCTATTTACACA 60.446 45.833 5.01 0.00 33.74 3.72
2649 3649 3.721575 ACCAGGCCATCCATCTATTTACA 59.278 43.478 5.01 0.00 33.74 2.41
2942 3942 5.464069 TCTTATGCCTGGAGGAGTACATTA 58.536 41.667 0.00 0.00 37.39 1.90
3077 4081 9.138062 CTCTTTCTATCTTGATGAATACCGATG 57.862 37.037 0.00 0.00 0.00 3.84
3109 4113 2.093341 TCGTGCCTTACTTATGGGGTTC 60.093 50.000 0.00 0.00 0.00 3.62
3140 4145 4.908736 TGCTTAGAATATTGTGCTTTCGC 58.091 39.130 0.00 0.00 0.00 4.70
3155 4160 6.655003 CCTTAGGTCTTTTCATGTTGCTTAGA 59.345 38.462 0.00 0.00 0.00 2.10
3176 4181 5.778750 AGTTTCTTGGTAGTAGCAGTCCTTA 59.221 40.000 1.77 0.00 0.00 2.69
3245 4250 2.197324 GTTCCTTGGTGGTGGCCA 59.803 61.111 0.00 0.00 37.07 5.36
3252 4257 1.604593 CAGCCAGGGTTCCTTGGTG 60.605 63.158 18.80 10.36 38.17 4.17
3298 4303 8.129211 GCTATAGCTCGATTTAAAACAATGGTT 58.871 33.333 17.75 0.00 37.11 3.67
3299 4304 7.282224 TGCTATAGCTCGATTTAAAACAATGGT 59.718 33.333 24.61 0.00 42.66 3.55
3300 4305 7.587757 GTGCTATAGCTCGATTTAAAACAATGG 59.412 37.037 24.61 0.00 42.66 3.16
3301 4306 8.481132 GTGCTATAGCTCGATTTAAAACAATG 57.519 34.615 24.61 0.00 42.66 2.82
3319 4324 8.596271 TTTTGTAAATGCTATAGCGTGCTATA 57.404 30.769 20.02 17.96 45.83 1.31
3320 4325 7.307989 CCTTTTGTAAATGCTATAGCGTGCTAT 60.308 37.037 20.02 17.65 45.83 2.97
3321 4326 6.018262 CCTTTTGTAAATGCTATAGCGTGCTA 60.018 38.462 20.02 11.68 45.83 3.49
3322 4327 5.220854 CCTTTTGTAAATGCTATAGCGTGCT 60.221 40.000 20.02 12.62 45.83 4.40
3323 4328 4.970003 CCTTTTGTAAATGCTATAGCGTGC 59.030 41.667 20.02 13.30 45.83 5.34
3324 4329 6.037172 AGACCTTTTGTAAATGCTATAGCGTG 59.963 38.462 20.02 6.86 45.83 5.34
3325 4330 6.113411 AGACCTTTTGTAAATGCTATAGCGT 58.887 36.000 19.55 16.84 45.83 5.07
3326 4331 6.604735 AGACCTTTTGTAAATGCTATAGCG 57.395 37.500 19.55 3.54 45.83 4.26
3327 4332 6.693113 GCAAGACCTTTTGTAAATGCTATAGC 59.307 38.462 18.18 18.18 42.50 2.97
3328 4333 6.907212 CGCAAGACCTTTTGTAAATGCTATAG 59.093 38.462 0.00 0.00 43.02 1.31
3329 4334 6.676943 GCGCAAGACCTTTTGTAAATGCTATA 60.677 38.462 0.30 0.00 43.02 1.31
3330 4335 5.640732 CGCAAGACCTTTTGTAAATGCTAT 58.359 37.500 0.00 0.00 43.02 2.97
3331 4336 4.614993 GCGCAAGACCTTTTGTAAATGCTA 60.615 41.667 0.30 0.00 43.02 3.49
3332 4337 3.857010 GCGCAAGACCTTTTGTAAATGCT 60.857 43.478 0.30 0.00 43.02 3.79
3333 4338 2.408368 GCGCAAGACCTTTTGTAAATGC 59.592 45.455 0.30 0.00 43.02 3.56
3334 4339 3.900941 AGCGCAAGACCTTTTGTAAATG 58.099 40.909 11.47 0.00 43.02 2.32
3335 4340 5.472137 TCTTAGCGCAAGACCTTTTGTAAAT 59.528 36.000 11.47 0.00 38.39 1.40
3336 4341 4.817464 TCTTAGCGCAAGACCTTTTGTAAA 59.183 37.500 11.47 0.00 38.39 2.01
3337 4342 4.382291 TCTTAGCGCAAGACCTTTTGTAA 58.618 39.130 11.47 0.00 38.39 2.41
3338 4343 3.994392 CTCTTAGCGCAAGACCTTTTGTA 59.006 43.478 11.47 0.00 38.39 2.41
3339 4344 2.808543 CTCTTAGCGCAAGACCTTTTGT 59.191 45.455 11.47 0.00 38.39 2.83
3340 4345 3.067106 TCTCTTAGCGCAAGACCTTTTG 58.933 45.455 11.47 4.34 38.39 2.44
3341 4346 3.067833 GTCTCTTAGCGCAAGACCTTTT 58.932 45.455 11.47 0.00 38.39 2.27
3342 4347 2.037251 TGTCTCTTAGCGCAAGACCTTT 59.963 45.455 21.57 0.00 38.39 3.11
3343 4348 1.618837 TGTCTCTTAGCGCAAGACCTT 59.381 47.619 21.57 0.00 38.39 3.50
3344 4349 1.257743 TGTCTCTTAGCGCAAGACCT 58.742 50.000 21.57 0.46 38.39 3.85
3345 4350 2.301577 ATGTCTCTTAGCGCAAGACC 57.698 50.000 21.57 14.10 38.39 3.85
3346 4351 2.349886 CCAATGTCTCTTAGCGCAAGAC 59.650 50.000 11.47 16.64 38.39 3.01
3347 4352 2.028112 ACCAATGTCTCTTAGCGCAAGA 60.028 45.455 11.47 15.40 41.10 3.02
3348 4353 2.349886 GACCAATGTCTCTTAGCGCAAG 59.650 50.000 11.47 11.67 38.53 4.01
3349 4354 2.346803 GACCAATGTCTCTTAGCGCAA 58.653 47.619 11.47 0.50 38.53 4.85
3350 4355 1.405526 GGACCAATGTCTCTTAGCGCA 60.406 52.381 11.47 0.00 41.47 6.09
3351 4356 1.291132 GGACCAATGTCTCTTAGCGC 58.709 55.000 0.00 0.00 41.47 5.92
3352 4357 2.672961 TGGACCAATGTCTCTTAGCG 57.327 50.000 0.00 0.00 41.47 4.26
3353 4358 4.072131 TGTTTGGACCAATGTCTCTTAGC 58.928 43.478 7.99 0.00 41.47 3.09
3354 4359 6.633500 TTTGTTTGGACCAATGTCTCTTAG 57.367 37.500 7.99 0.00 41.47 2.18
3355 4360 6.775142 TCATTTGTTTGGACCAATGTCTCTTA 59.225 34.615 7.99 0.00 39.01 2.10
3356 4361 5.598005 TCATTTGTTTGGACCAATGTCTCTT 59.402 36.000 7.99 0.00 39.01 2.85
3357 4362 5.139727 TCATTTGTTTGGACCAATGTCTCT 58.860 37.500 7.99 0.00 39.01 3.10
3358 4363 5.452078 TCATTTGTTTGGACCAATGTCTC 57.548 39.130 7.99 0.00 39.01 3.36
3359 4364 5.867903 TTCATTTGTTTGGACCAATGTCT 57.132 34.783 7.99 0.00 39.01 3.41
3360 4365 8.495148 GTTTATTCATTTGTTTGGACCAATGTC 58.505 33.333 7.99 2.92 39.01 3.06
3361 4366 7.989741 TGTTTATTCATTTGTTTGGACCAATGT 59.010 29.630 7.99 0.00 39.01 2.71
3362 4367 8.375608 TGTTTATTCATTTGTTTGGACCAATG 57.624 30.769 7.99 2.95 39.19 2.82
3363 4368 9.571816 AATGTTTATTCATTTGTTTGGACCAAT 57.428 25.926 7.99 0.00 34.86 3.16
3364 4369 8.970859 AATGTTTATTCATTTGTTTGGACCAA 57.029 26.923 1.69 1.69 34.86 3.67
3365 4370 8.970859 AAATGTTTATTCATTTGTTTGGACCA 57.029 26.923 0.00 0.00 43.50 4.02
3377 4382 9.801873 AGCACGCTATTTAAAATGTTTATTCAT 57.198 25.926 0.00 0.00 0.00 2.57
3382 4387 9.872757 GCTATAGCACGCTATTTAAAATGTTTA 57.127 29.630 20.01 0.00 39.65 2.01
3383 4388 8.621286 AGCTATAGCACGCTATTTAAAATGTTT 58.379 29.630 26.07 0.00 45.16 2.83
3384 4389 8.154649 AGCTATAGCACGCTATTTAAAATGTT 57.845 30.769 26.07 0.00 45.16 2.71
3385 4390 7.095187 GGAGCTATAGCACGCTATTTAAAATGT 60.095 37.037 26.07 0.00 45.16 2.71
3386 4391 7.237173 GGAGCTATAGCACGCTATTTAAAATG 58.763 38.462 26.07 1.78 45.16 2.32
3387 4392 6.090898 CGGAGCTATAGCACGCTATTTAAAAT 59.909 38.462 26.07 0.12 45.16 1.82
3388 4393 5.404366 CGGAGCTATAGCACGCTATTTAAAA 59.596 40.000 26.07 0.00 45.16 1.52
3389 4394 4.921515 CGGAGCTATAGCACGCTATTTAAA 59.078 41.667 26.07 0.00 45.16 1.52
3390 4395 4.482386 CGGAGCTATAGCACGCTATTTAA 58.518 43.478 26.07 0.00 45.16 1.52
3391 4396 4.092771 CGGAGCTATAGCACGCTATTTA 57.907 45.455 26.07 0.00 45.16 1.40
3392 4397 2.947852 CGGAGCTATAGCACGCTATTT 58.052 47.619 26.07 2.90 45.16 1.40
3393 4398 2.638556 CGGAGCTATAGCACGCTATT 57.361 50.000 26.07 3.69 45.16 1.73
3407 4412 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
3408 4413 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
3422 4427 5.005490 GTGAACCTCTTGTAAACGCTATAGC 59.995 44.000 15.09 15.09 37.78 2.97
3423 4428 5.519206 GGTGAACCTCTTGTAAACGCTATAG 59.481 44.000 0.00 0.00 0.00 1.31
3424 4429 5.413499 GGTGAACCTCTTGTAAACGCTATA 58.587 41.667 0.00 0.00 0.00 1.31
3425 4430 4.251268 GGTGAACCTCTTGTAAACGCTAT 58.749 43.478 0.00 0.00 0.00 2.97
3426 4431 3.656559 GGTGAACCTCTTGTAAACGCTA 58.343 45.455 0.00 0.00 0.00 4.26
3427 4432 2.490991 GGTGAACCTCTTGTAAACGCT 58.509 47.619 0.00 0.00 0.00 5.07
3428 4433 1.193874 CGGTGAACCTCTTGTAAACGC 59.806 52.381 0.00 0.00 0.00 4.84
3429 4434 1.193874 GCGGTGAACCTCTTGTAAACG 59.806 52.381 0.00 0.00 0.00 3.60
3430 4435 2.490991 AGCGGTGAACCTCTTGTAAAC 58.509 47.619 0.00 0.00 0.00 2.01
3431 4436 2.922740 AGCGGTGAACCTCTTGTAAA 57.077 45.000 0.00 0.00 0.00 2.01
3432 4437 3.575256 TCTTAGCGGTGAACCTCTTGTAA 59.425 43.478 0.00 0.00 32.52 2.41
3433 4438 3.159472 TCTTAGCGGTGAACCTCTTGTA 58.841 45.455 0.00 0.00 32.52 2.41
3434 4439 1.968493 TCTTAGCGGTGAACCTCTTGT 59.032 47.619 0.00 0.00 32.52 3.16
3435 4440 2.611518 CTCTTAGCGGTGAACCTCTTG 58.388 52.381 0.00 0.00 32.52 3.02
3436 4441 1.550976 CCTCTTAGCGGTGAACCTCTT 59.449 52.381 0.00 0.00 32.52 2.85
3437 4442 1.187087 CCTCTTAGCGGTGAACCTCT 58.813 55.000 0.00 0.00 34.96 3.69
3438 4443 0.460459 GCCTCTTAGCGGTGAACCTC 60.460 60.000 0.00 0.00 0.00 3.85
3439 4444 0.905337 AGCCTCTTAGCGGTGAACCT 60.905 55.000 0.00 0.00 38.01 3.50
3440 4445 0.036294 AAGCCTCTTAGCGGTGAACC 60.036 55.000 0.00 0.00 38.01 3.62
3441 4446 2.541556 CTAAGCCTCTTAGCGGTGAAC 58.458 52.381 0.00 0.00 38.01 3.18
3442 4447 1.134788 GCTAAGCCTCTTAGCGGTGAA 60.135 52.381 18.95 0.00 38.12 3.18
3443 4448 0.460311 GCTAAGCCTCTTAGCGGTGA 59.540 55.000 18.95 0.00 38.12 4.02
3444 4449 2.979130 GCTAAGCCTCTTAGCGGTG 58.021 57.895 18.95 0.00 38.12 4.94
3448 4453 2.590401 GCGCGCTAAGCCTCTTAGC 61.590 63.158 26.67 22.09 44.76 3.09
3449 4454 0.311165 TAGCGCGCTAAGCCTCTTAG 59.689 55.000 36.77 8.76 44.76 2.18
3450 4455 0.959553 ATAGCGCGCTAAGCCTCTTA 59.040 50.000 40.90 20.62 44.76 2.10
3451 4456 0.105039 AATAGCGCGCTAAGCCTCTT 59.895 50.000 40.90 27.25 44.76 2.85
3452 4457 0.105039 AAATAGCGCGCTAAGCCTCT 59.895 50.000 40.90 23.18 44.76 3.69
3453 4458 1.779569 TAAATAGCGCGCTAAGCCTC 58.220 50.000 40.90 6.44 44.76 4.70
3454 4459 2.234300 TTAAATAGCGCGCTAAGCCT 57.766 45.000 40.90 26.65 44.76 4.58
3455 4460 3.033873 GTTTTAAATAGCGCGCTAAGCC 58.966 45.455 40.90 21.36 44.76 4.35
3456 4461 3.936661 AGTTTTAAATAGCGCGCTAAGC 58.063 40.909 40.90 27.92 43.95 3.09
3457 4462 6.646636 ACATAGTTTTAAATAGCGCGCTAAG 58.353 36.000 40.90 18.17 31.73 2.18
3458 4463 6.592798 ACATAGTTTTAAATAGCGCGCTAA 57.407 33.333 40.90 26.03 31.73 3.09
3459 4464 6.592798 AACATAGTTTTAAATAGCGCGCTA 57.407 33.333 39.72 39.72 0.00 4.26
3460 4465 5.479716 AACATAGTTTTAAATAGCGCGCT 57.520 34.783 38.01 38.01 0.00 5.92
3461 4466 5.963586 AGAAACATAGTTTTAAATAGCGCGC 59.036 36.000 26.66 26.66 0.00 6.86
3462 4467 8.930982 GTTAGAAACATAGTTTTAAATAGCGCG 58.069 33.333 0.00 0.00 0.00 6.86
3463 4468 9.218359 GGTTAGAAACATAGTTTTAAATAGCGC 57.782 33.333 0.00 0.00 0.00 5.92
3470 4475 9.027202 GGGGATTGGTTAGAAACATAGTTTTAA 57.973 33.333 0.00 0.00 0.00 1.52
3471 4476 8.395605 AGGGGATTGGTTAGAAACATAGTTTTA 58.604 33.333 0.00 0.00 0.00 1.52
3472 4477 7.246027 AGGGGATTGGTTAGAAACATAGTTTT 58.754 34.615 0.00 0.00 0.00 2.43
3473 4478 6.800890 AGGGGATTGGTTAGAAACATAGTTT 58.199 36.000 0.00 0.00 0.00 2.66
3474 4479 6.402981 AGGGGATTGGTTAGAAACATAGTT 57.597 37.500 0.00 0.00 0.00 2.24
3475 4480 7.519347 TTAGGGGATTGGTTAGAAACATAGT 57.481 36.000 0.00 0.00 0.00 2.12
3476 4481 8.817092 TTTTAGGGGATTGGTTAGAAACATAG 57.183 34.615 0.00 0.00 0.00 2.23
3477 4482 8.395605 ACTTTTAGGGGATTGGTTAGAAACATA 58.604 33.333 0.00 0.00 0.00 2.29
3478 4483 7.246027 ACTTTTAGGGGATTGGTTAGAAACAT 58.754 34.615 0.00 0.00 0.00 2.71
3479 4484 6.616577 ACTTTTAGGGGATTGGTTAGAAACA 58.383 36.000 0.00 0.00 0.00 2.83
3480 4485 7.534723 AACTTTTAGGGGATTGGTTAGAAAC 57.465 36.000 0.00 0.00 0.00 2.78
3490 4495 8.712103 GGATACTACACTAACTTTTAGGGGATT 58.288 37.037 0.49 0.00 0.00 3.01
3493 4498 6.462067 CCGGATACTACACTAACTTTTAGGGG 60.462 46.154 0.00 0.00 0.00 4.79
3566 4572 6.917217 TTTTGGCCTAACAAGACAATTTTG 57.083 33.333 3.32 0.00 0.00 2.44
3615 4622 0.643820 GTTGGCGTGTGCGTCTATAC 59.356 55.000 0.00 0.00 44.07 1.47
3619 4626 2.967076 CAGTTGGCGTGTGCGTCT 60.967 61.111 0.00 0.00 44.07 4.18
3642 4649 2.034124 ACAATCAGCTGCACCAACTTT 58.966 42.857 9.47 0.00 0.00 2.66
3645 4652 0.110056 CGACAATCAGCTGCACCAAC 60.110 55.000 9.47 0.00 0.00 3.77
3646 4653 1.855213 GCGACAATCAGCTGCACCAA 61.855 55.000 9.47 0.00 0.00 3.67
3647 4654 2.327343 GCGACAATCAGCTGCACCA 61.327 57.895 9.47 0.00 0.00 4.17
3648 4655 2.327343 TGCGACAATCAGCTGCACC 61.327 57.895 9.47 0.00 0.00 5.01
3649 4656 3.256936 TGCGACAATCAGCTGCAC 58.743 55.556 9.47 0.00 0.00 4.57
3651 4658 0.179205 GAAGTGCGACAATCAGCTGC 60.179 55.000 9.47 0.00 0.00 5.25
3652 4659 0.445436 GGAAGTGCGACAATCAGCTG 59.555 55.000 7.63 7.63 0.00 4.24
3653 4660 0.035317 TGGAAGTGCGACAATCAGCT 59.965 50.000 0.00 0.00 0.00 4.24
3654 4661 1.063174 GATGGAAGTGCGACAATCAGC 59.937 52.381 0.00 0.00 0.00 4.26
3655 4662 2.625737 AGATGGAAGTGCGACAATCAG 58.374 47.619 0.00 0.00 0.00 2.90
3656 4663 2.768253 AGATGGAAGTGCGACAATCA 57.232 45.000 0.00 0.00 0.00 2.57
3657 4664 3.059325 GCATAGATGGAAGTGCGACAATC 60.059 47.826 0.00 0.00 0.00 2.67
3658 4665 2.874701 GCATAGATGGAAGTGCGACAAT 59.125 45.455 0.00 0.00 0.00 2.71
3668 4681 5.840693 TCTTCTGTCCTATGCATAGATGGAA 59.159 40.000 31.14 24.06 32.05 3.53
3670 4683 5.011431 TGTCTTCTGTCCTATGCATAGATGG 59.989 44.000 31.14 17.94 32.05 3.51
3684 4697 9.887406 TTCGGTAATTAAAATTTGTCTTCTGTC 57.113 29.630 0.00 0.00 0.00 3.51
3687 4700 9.893305 CAGTTCGGTAATTAAAATTTGTCTTCT 57.107 29.630 0.00 0.00 0.00 2.85
3699 4712 8.289939 AGATGAGTAGTCAGTTCGGTAATTAA 57.710 34.615 6.39 0.00 35.66 1.40
3706 4719 3.314080 GGAGAGATGAGTAGTCAGTTCGG 59.686 52.174 6.39 0.00 35.66 4.30
3723 4736 6.205464 TGCACTTTTATTCAGTTTGAGGAGAG 59.795 38.462 0.00 0.00 0.00 3.20
3725 4738 6.016777 AGTGCACTTTTATTCAGTTTGAGGAG 60.017 38.462 15.25 0.00 0.00 3.69
3736 4749 5.585390 CCCATCATCAGTGCACTTTTATTC 58.415 41.667 18.94 0.00 0.00 1.75
3772 4785 7.048629 TGCAACAATTTGAACCTCTTAATCA 57.951 32.000 2.79 0.00 34.24 2.57
3777 4790 6.405538 TCTTTTGCAACAATTTGAACCTCTT 58.594 32.000 0.00 0.00 34.24 2.85
3779 4792 6.660887 TTCTTTTGCAACAATTTGAACCTC 57.339 33.333 0.00 0.00 34.24 3.85
3782 4795 8.014517 TCACTTTTCTTTTGCAACAATTTGAAC 58.985 29.630 0.00 0.00 34.24 3.18
3795 4808 7.383361 GTGTGTCGATTTTCACTTTTCTTTTG 58.617 34.615 5.61 0.00 35.82 2.44
3796 4809 6.530181 GGTGTGTCGATTTTCACTTTTCTTTT 59.470 34.615 5.61 0.00 35.82 2.27
3799 4812 4.881850 AGGTGTGTCGATTTTCACTTTTCT 59.118 37.500 5.61 0.00 35.82 2.52
3800 4813 4.970003 CAGGTGTGTCGATTTTCACTTTTC 59.030 41.667 5.61 0.00 35.82 2.29
3806 4819 4.384940 TCAATCAGGTGTGTCGATTTTCA 58.615 39.130 0.00 0.00 0.00 2.69
3813 4826 3.066380 TCATGTTCAATCAGGTGTGTCG 58.934 45.455 0.00 0.00 0.00 4.35
3817 4830 3.476552 ACGTTCATGTTCAATCAGGTGT 58.523 40.909 0.00 0.00 0.00 4.16
3829 4842 4.518970 AGCTGTATTTTTGGACGTTCATGT 59.481 37.500 0.00 0.00 0.00 3.21
3838 4851 6.434028 AGAGTATTTGCAGCTGTATTTTTGGA 59.566 34.615 16.64 0.00 0.00 3.53
3843 4856 6.889198 TCCTAGAGTATTTGCAGCTGTATTT 58.111 36.000 16.64 3.92 0.00 1.40
3870 4884 4.666253 ACGCCATGCTTGTGCCCT 62.666 61.111 0.00 0.00 38.71 5.19
3883 4897 3.011119 TGGACAAATAATGTACCACGCC 58.989 45.455 0.00 0.00 42.77 5.68
3884 4898 3.687698 ACTGGACAAATAATGTACCACGC 59.312 43.478 0.00 0.00 42.77 5.34
3885 4899 5.873179 AACTGGACAAATAATGTACCACG 57.127 39.130 0.00 0.00 42.77 4.94
3895 4911 2.303600 ACCTGCCGTAACTGGACAAATA 59.696 45.455 0.00 0.00 33.18 1.40
3929 4945 7.243604 TGGCCAGTTTCATAAAATCAGAATT 57.756 32.000 0.00 0.00 0.00 2.17
3930 4946 6.855763 TGGCCAGTTTCATAAAATCAGAAT 57.144 33.333 0.00 0.00 0.00 2.40
3932 4948 6.664816 AGATTGGCCAGTTTCATAAAATCAGA 59.335 34.615 5.11 0.00 0.00 3.27
3933 4949 6.870769 AGATTGGCCAGTTTCATAAAATCAG 58.129 36.000 5.11 0.00 0.00 2.90
3934 4950 6.855763 AGATTGGCCAGTTTCATAAAATCA 57.144 33.333 5.11 0.00 0.00 2.57
3941 4957 6.418057 TTGTTTTAGATTGGCCAGTTTCAT 57.582 33.333 5.11 0.00 0.00 2.57
3948 4964 7.382898 GGTAGAAATTTGTTTTAGATTGGCCA 58.617 34.615 0.00 0.00 0.00 5.36
3971 4991 1.987855 TCGGGCTTTCTGGATCGGT 60.988 57.895 0.00 0.00 0.00 4.69
3973 4993 1.521681 GGTCGGGCTTTCTGGATCG 60.522 63.158 0.00 0.00 0.00 3.69
3978 4998 0.671781 CAGACTGGTCGGGCTTTCTG 60.672 60.000 0.00 0.00 34.09 3.02
4020 5044 6.099701 ACTCCCTTTGTACTGATGCATATGTA 59.900 38.462 0.00 3.02 0.00 2.29
4028 5052 4.899502 ACAGAACTCCCTTTGTACTGATG 58.100 43.478 0.00 0.00 0.00 3.07
4054 5078 1.688197 AGGGTTTTCCATGTGCAGTTG 59.312 47.619 0.00 0.00 42.91 3.16
4057 5081 2.629617 AGAAAGGGTTTTCCATGTGCAG 59.370 45.455 0.00 0.00 42.99 4.41
4066 5090 7.649705 GTGAATTCAGAAGAAGAAAGGGTTTTC 59.350 37.037 8.80 0.00 42.44 2.29
4071 5095 6.639632 TTGTGAATTCAGAAGAAGAAAGGG 57.360 37.500 13.63 0.00 37.14 3.95
4072 5096 8.739649 GAATTGTGAATTCAGAAGAAGAAAGG 57.260 34.615 21.02 0.00 45.18 3.11
4090 5114 5.348451 TGTGTATGACGATCACTGAATTGTG 59.652 40.000 0.00 0.00 39.15 3.33
4091 5115 5.478407 TGTGTATGACGATCACTGAATTGT 58.522 37.500 0.00 0.00 33.82 2.71
4092 5116 6.594284 ATGTGTATGACGATCACTGAATTG 57.406 37.500 0.00 0.00 33.82 2.32
4093 5117 7.466805 CAAATGTGTATGACGATCACTGAATT 58.533 34.615 0.00 0.00 33.82 2.17
4094 5118 6.457392 GCAAATGTGTATGACGATCACTGAAT 60.457 38.462 0.00 0.00 33.82 2.57
4095 5119 5.163864 GCAAATGTGTATGACGATCACTGAA 60.164 40.000 0.00 0.00 33.82 3.02
4096 5120 4.329801 GCAAATGTGTATGACGATCACTGA 59.670 41.667 0.00 0.00 33.82 3.41
4097 5121 4.330894 AGCAAATGTGTATGACGATCACTG 59.669 41.667 0.00 0.00 33.82 3.66
4098 5122 4.507710 AGCAAATGTGTATGACGATCACT 58.492 39.130 0.00 0.00 33.82 3.41
4099 5123 4.568359 AGAGCAAATGTGTATGACGATCAC 59.432 41.667 0.00 0.00 0.00 3.06
4100 5124 4.758688 AGAGCAAATGTGTATGACGATCA 58.241 39.130 0.00 0.00 0.00 2.92
4101 5125 5.046529 AGAGAGCAAATGTGTATGACGATC 58.953 41.667 0.00 0.00 0.00 3.69
4102 5126 5.016051 AGAGAGCAAATGTGTATGACGAT 57.984 39.130 0.00 0.00 0.00 3.73
4103 5127 4.456280 AGAGAGCAAATGTGTATGACGA 57.544 40.909 0.00 0.00 0.00 4.20
4104 5128 4.627035 TCAAGAGAGCAAATGTGTATGACG 59.373 41.667 0.00 0.00 0.00 4.35
4105 5129 6.486253 TTCAAGAGAGCAAATGTGTATGAC 57.514 37.500 0.00 0.00 0.00 3.06
4106 5130 5.122869 GCTTCAAGAGAGCAAATGTGTATGA 59.877 40.000 0.00 0.00 0.00 2.15
4107 5131 5.330295 GCTTCAAGAGAGCAAATGTGTATG 58.670 41.667 0.00 0.00 0.00 2.39
4108 5132 4.397417 GGCTTCAAGAGAGCAAATGTGTAT 59.603 41.667 0.00 0.00 0.00 2.29
4109 5133 3.753272 GGCTTCAAGAGAGCAAATGTGTA 59.247 43.478 0.00 0.00 0.00 2.90
4110 5134 2.555757 GGCTTCAAGAGAGCAAATGTGT 59.444 45.455 0.00 0.00 0.00 3.72
4111 5135 2.555325 TGGCTTCAAGAGAGCAAATGTG 59.445 45.455 0.00 0.00 0.00 3.21
4112 5136 2.867624 TGGCTTCAAGAGAGCAAATGT 58.132 42.857 0.00 0.00 0.00 2.71
4113 5137 3.928727 TTGGCTTCAAGAGAGCAAATG 57.071 42.857 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.