Multiple sequence alignment - TraesCS3A01G472900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G472900 chr3A 100.000 2372 0 0 1 2372 703908744 703906373 0.000000e+00 4381.0
1 TraesCS3A01G472900 chr3A 97.368 38 1 0 1364 1401 703907351 703907314 5.470000e-07 65.8
2 TraesCS3A01G472900 chr3A 97.368 38 1 0 1394 1431 703907381 703907344 5.470000e-07 65.8
3 TraesCS3A01G472900 chr3D 88.777 1096 60 27 647 1728 571015264 571014218 0.000000e+00 1284.0
4 TraesCS3A01G472900 chr3D 88.205 780 34 18 647 1401 571055440 571054694 0.000000e+00 878.0
5 TraesCS3A01G472900 chr3D 86.702 188 11 8 1403 1590 571054722 571054549 1.860000e-46 196.0
6 TraesCS3A01G472900 chr3D 93.578 109 7 0 1577 1685 571052708 571052600 1.890000e-36 163.0
7 TraesCS3A01G472900 chr3D 90.909 66 3 2 602 666 571056927 571056864 4.200000e-13 86.1
8 TraesCS3A01G472900 chr3D 92.453 53 4 0 452 504 571057044 571056992 2.530000e-10 76.8
9 TraesCS3A01G472900 chr3B 87.568 1110 60 32 647 1728 757951388 757950329 0.000000e+00 1214.0
10 TraesCS3A01G472900 chr3B 86.813 546 65 7 1830 2372 60152856 60152315 9.380000e-169 603.0
11 TraesCS3A01G472900 chr3B 91.931 347 28 0 29 375 797669961 797669615 9.860000e-134 486.0
12 TraesCS3A01G472900 chr3B 89.394 66 5 1 601 666 757951501 757951438 5.430000e-12 82.4
13 TraesCS3A01G472900 chr1B 92.110 545 41 2 1830 2372 186181865 186182409 0.000000e+00 767.0
14 TraesCS3A01G472900 chr7A 91.042 547 45 4 1830 2372 632580652 632580106 0.000000e+00 736.0
15 TraesCS3A01G472900 chr7A 90.988 344 28 3 37 379 33040115 33040456 5.970000e-126 460.0
16 TraesCS3A01G472900 chr7A 90.544 349 30 2 34 380 6881517 6881170 2.150000e-125 459.0
17 TraesCS3A01G472900 chr6D 91.731 520 30 9 1860 2372 55167924 55167411 0.000000e+00 710.0
18 TraesCS3A01G472900 chr2D 89.362 517 49 6 1830 2342 589251781 589251267 0.000000e+00 645.0
19 TraesCS3A01G472900 chr2D 91.716 338 27 1 34 371 56532034 56531698 3.570000e-128 468.0
20 TraesCS3A01G472900 chr7B 88.095 546 57 7 1832 2372 571157286 571157828 1.990000e-180 641.0
21 TraesCS3A01G472900 chr6B 77.720 965 112 54 897 1811 13600198 13601109 1.640000e-136 496.0
22 TraesCS3A01G472900 chr6B 77.433 966 114 46 897 1811 13520985 13521897 4.590000e-132 481.0
23 TraesCS3A01G472900 chr6B 77.120 979 111 59 897 1811 13555286 13556215 1.660000e-126 462.0
24 TraesCS3A01G472900 chr6B 76.639 976 115 60 897 1807 13499678 13500605 3.620000e-118 435.0
25 TraesCS3A01G472900 chr6B 76.367 622 70 36 1232 1811 13528837 13529423 1.810000e-66 263.0
26 TraesCS3A01G472900 chr7D 93.134 335 23 0 37 371 548476579 548476245 2.120000e-135 492.0
27 TraesCS3A01G472900 chr2A 92.604 338 25 0 34 371 27651076 27650739 9.860000e-134 486.0
28 TraesCS3A01G472900 chr5A 92.705 329 24 0 43 371 30516510 30516838 2.130000e-130 475.0
29 TraesCS3A01G472900 chr5A 91.445 339 29 0 42 380 566553030 566553368 1.280000e-127 466.0
30 TraesCS3A01G472900 chr5A 90.801 337 28 3 1995 2330 472497090 472496756 4.650000e-122 448.0
31 TraesCS3A01G472900 chr5A 93.939 297 13 1 2081 2372 69549064 69549360 6.020000e-121 444.0
32 TraesCS3A01G472900 chr5A 92.776 263 16 3 1830 2089 69547270 69547532 6.190000e-101 377.0
33 TraesCS3A01G472900 chr1A 90.571 350 31 2 32 380 299633208 299632860 1.660000e-126 462.0
34 TraesCS3A01G472900 chr5B 80.989 526 81 16 1859 2372 602951729 602952247 1.320000e-107 399.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G472900 chr3A 703906373 703908744 2371 True 1504.20 4381 98.245333 1 2372 3 chr3A.!!$R1 2371
1 TraesCS3A01G472900 chr3D 571014218 571015264 1046 True 1284.00 1284 88.777000 647 1728 1 chr3D.!!$R1 1081
2 TraesCS3A01G472900 chr3D 571052600 571057044 4444 True 279.98 878 90.369400 452 1685 5 chr3D.!!$R2 1233
3 TraesCS3A01G472900 chr3B 757950329 757951501 1172 True 648.20 1214 88.481000 601 1728 2 chr3B.!!$R3 1127
4 TraesCS3A01G472900 chr3B 60152315 60152856 541 True 603.00 603 86.813000 1830 2372 1 chr3B.!!$R1 542
5 TraesCS3A01G472900 chr1B 186181865 186182409 544 False 767.00 767 92.110000 1830 2372 1 chr1B.!!$F1 542
6 TraesCS3A01G472900 chr7A 632580106 632580652 546 True 736.00 736 91.042000 1830 2372 1 chr7A.!!$R2 542
7 TraesCS3A01G472900 chr6D 55167411 55167924 513 True 710.00 710 91.731000 1860 2372 1 chr6D.!!$R1 512
8 TraesCS3A01G472900 chr2D 589251267 589251781 514 True 645.00 645 89.362000 1830 2342 1 chr2D.!!$R2 512
9 TraesCS3A01G472900 chr7B 571157286 571157828 542 False 641.00 641 88.095000 1832 2372 1 chr7B.!!$F1 540
10 TraesCS3A01G472900 chr6B 13600198 13601109 911 False 496.00 496 77.720000 897 1811 1 chr6B.!!$F5 914
11 TraesCS3A01G472900 chr6B 13520985 13521897 912 False 481.00 481 77.433000 897 1811 1 chr6B.!!$F2 914
12 TraesCS3A01G472900 chr6B 13555286 13556215 929 False 462.00 462 77.120000 897 1811 1 chr6B.!!$F4 914
13 TraesCS3A01G472900 chr6B 13499678 13500605 927 False 435.00 435 76.639000 897 1807 1 chr6B.!!$F1 910
14 TraesCS3A01G472900 chr6B 13528837 13529423 586 False 263.00 263 76.367000 1232 1811 1 chr6B.!!$F3 579
15 TraesCS3A01G472900 chr5A 69547270 69549360 2090 False 410.50 444 93.357500 1830 2372 2 chr5A.!!$F3 542
16 TraesCS3A01G472900 chr5B 602951729 602952247 518 False 399.00 399 80.989000 1859 2372 1 chr5B.!!$F1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 431 0.03716 ACGCCCAGGTTTTCGGTAAT 59.963 50.0 0.0 0.0 0.0 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 5263 0.108804 TTTGCGAGTTCTCTAGGCCG 60.109 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.603237 TTCGACTATCCTGCATTACATTTG 57.397 37.500 0.00 0.00 0.00 2.32
25 26 4.511454 TCGACTATCCTGCATTACATTTGC 59.489 41.667 0.00 0.00 40.55 3.68
26 27 4.512944 CGACTATCCTGCATTACATTTGCT 59.487 41.667 0.00 0.00 40.77 3.91
27 28 5.008019 CGACTATCCTGCATTACATTTGCTT 59.992 40.000 0.00 0.00 40.77 3.91
28 29 6.458751 CGACTATCCTGCATTACATTTGCTTT 60.459 38.462 0.00 0.00 40.77 3.51
29 30 7.174107 ACTATCCTGCATTACATTTGCTTTT 57.826 32.000 0.00 0.00 40.77 2.27
30 31 7.614494 ACTATCCTGCATTACATTTGCTTTTT 58.386 30.769 0.00 0.00 40.77 1.94
92 93 6.317789 TGAACAGATTCAAACCATCTTGAC 57.682 37.500 0.00 0.00 41.99 3.18
93 94 5.241506 TGAACAGATTCAAACCATCTTGACC 59.758 40.000 0.00 0.00 41.99 4.02
94 95 3.753272 ACAGATTCAAACCATCTTGACCG 59.247 43.478 0.00 0.00 35.07 4.79
95 96 3.753272 CAGATTCAAACCATCTTGACCGT 59.247 43.478 0.00 0.00 35.07 4.83
96 97 4.003648 AGATTCAAACCATCTTGACCGTC 58.996 43.478 0.00 0.00 35.07 4.79
97 98 2.920724 TCAAACCATCTTGACCGTCA 57.079 45.000 0.00 0.00 30.31 4.35
98 99 3.201353 TCAAACCATCTTGACCGTCAA 57.799 42.857 13.29 13.29 34.79 3.18
99 100 3.546724 TCAAACCATCTTGACCGTCAAA 58.453 40.909 14.74 6.94 35.73 2.69
100 101 4.141287 TCAAACCATCTTGACCGTCAAAT 58.859 39.130 14.74 8.71 35.73 2.32
101 102 4.215399 TCAAACCATCTTGACCGTCAAATC 59.785 41.667 14.74 0.00 35.73 2.17
102 103 3.417069 ACCATCTTGACCGTCAAATCA 57.583 42.857 14.74 3.04 35.73 2.57
103 104 3.955471 ACCATCTTGACCGTCAAATCAT 58.045 40.909 14.74 5.10 35.73 2.45
104 105 3.691118 ACCATCTTGACCGTCAAATCATG 59.309 43.478 14.74 14.86 35.73 3.07
105 106 3.691118 CCATCTTGACCGTCAAATCATGT 59.309 43.478 14.74 0.00 35.73 3.21
106 107 4.156556 CCATCTTGACCGTCAAATCATGTT 59.843 41.667 14.74 0.00 35.73 2.71
107 108 5.353956 CCATCTTGACCGTCAAATCATGTTA 59.646 40.000 14.74 0.00 35.73 2.41
108 109 6.038603 CCATCTTGACCGTCAAATCATGTTAT 59.961 38.462 14.74 0.00 35.73 1.89
109 110 6.662414 TCTTGACCGTCAAATCATGTTATC 57.338 37.500 14.74 0.00 35.73 1.75
110 111 6.406370 TCTTGACCGTCAAATCATGTTATCT 58.594 36.000 14.74 0.00 35.73 1.98
111 112 7.552459 TCTTGACCGTCAAATCATGTTATCTA 58.448 34.615 14.74 0.00 35.73 1.98
112 113 7.706607 TCTTGACCGTCAAATCATGTTATCTAG 59.293 37.037 14.74 0.00 35.73 2.43
113 114 5.753438 TGACCGTCAAATCATGTTATCTAGC 59.247 40.000 0.00 0.00 0.00 3.42
114 115 5.918608 ACCGTCAAATCATGTTATCTAGCT 58.081 37.500 0.00 0.00 0.00 3.32
115 116 5.755375 ACCGTCAAATCATGTTATCTAGCTG 59.245 40.000 0.00 0.00 0.00 4.24
116 117 5.755375 CCGTCAAATCATGTTATCTAGCTGT 59.245 40.000 0.00 0.00 0.00 4.40
117 118 6.258727 CCGTCAAATCATGTTATCTAGCTGTT 59.741 38.462 0.00 0.00 0.00 3.16
118 119 7.340699 CGTCAAATCATGTTATCTAGCTGTTC 58.659 38.462 0.00 0.00 0.00 3.18
119 120 7.340699 GTCAAATCATGTTATCTAGCTGTTCG 58.659 38.462 0.00 0.00 0.00 3.95
120 121 7.222805 GTCAAATCATGTTATCTAGCTGTTCGA 59.777 37.037 0.00 0.00 0.00 3.71
121 122 7.763985 TCAAATCATGTTATCTAGCTGTTCGAA 59.236 33.333 0.00 0.00 0.00 3.71
122 123 8.554528 CAAATCATGTTATCTAGCTGTTCGAAT 58.445 33.333 0.00 0.00 0.00 3.34
123 124 7.881643 ATCATGTTATCTAGCTGTTCGAATC 57.118 36.000 0.00 0.00 0.00 2.52
124 125 5.915196 TCATGTTATCTAGCTGTTCGAATCG 59.085 40.000 0.00 0.00 0.00 3.34
125 126 5.244785 TGTTATCTAGCTGTTCGAATCGT 57.755 39.130 0.00 0.00 0.00 3.73
126 127 5.647589 TGTTATCTAGCTGTTCGAATCGTT 58.352 37.500 0.00 0.00 0.00 3.85
127 128 5.742453 TGTTATCTAGCTGTTCGAATCGTTC 59.258 40.000 0.00 0.00 0.00 3.95
128 129 3.146618 TCTAGCTGTTCGAATCGTTCC 57.853 47.619 0.00 0.00 0.00 3.62
129 130 2.490509 TCTAGCTGTTCGAATCGTTCCA 59.509 45.455 0.00 0.00 0.00 3.53
130 131 2.163818 AGCTGTTCGAATCGTTCCAA 57.836 45.000 0.00 0.00 0.00 3.53
131 132 2.699954 AGCTGTTCGAATCGTTCCAAT 58.300 42.857 0.00 0.00 0.00 3.16
132 133 2.416547 AGCTGTTCGAATCGTTCCAATG 59.583 45.455 0.00 0.00 0.00 2.82
133 134 2.159627 GCTGTTCGAATCGTTCCAATGT 59.840 45.455 0.00 0.00 0.00 2.71
134 135 3.364964 GCTGTTCGAATCGTTCCAATGTT 60.365 43.478 0.00 0.00 0.00 2.71
135 136 4.140518 TGTTCGAATCGTTCCAATGTTG 57.859 40.909 0.00 0.00 0.00 3.33
136 137 3.810386 TGTTCGAATCGTTCCAATGTTGA 59.190 39.130 0.00 0.00 0.00 3.18
137 138 4.084066 TGTTCGAATCGTTCCAATGTTGAG 60.084 41.667 0.00 0.00 0.00 3.02
138 139 2.415168 TCGAATCGTTCCAATGTTGAGC 59.585 45.455 1.52 0.00 0.00 4.26
139 140 2.159430 CGAATCGTTCCAATGTTGAGCA 59.841 45.455 0.00 0.00 0.00 4.26
140 141 3.492313 GAATCGTTCCAATGTTGAGCAC 58.508 45.455 0.00 0.00 0.00 4.40
141 142 1.234821 TCGTTCCAATGTTGAGCACC 58.765 50.000 0.00 0.00 0.00 5.01
142 143 0.950836 CGTTCCAATGTTGAGCACCA 59.049 50.000 0.00 0.00 0.00 4.17
143 144 1.336440 CGTTCCAATGTTGAGCACCAA 59.664 47.619 0.00 0.00 0.00 3.67
144 145 2.605338 CGTTCCAATGTTGAGCACCAAG 60.605 50.000 0.00 0.00 35.03 3.61
145 146 0.961019 TCCAATGTTGAGCACCAAGC 59.039 50.000 0.00 0.00 46.19 4.01
169 170 5.978934 CGTTTAACGCTCTAATTACCCAT 57.021 39.130 4.11 0.00 33.65 4.00
170 171 5.970879 CGTTTAACGCTCTAATTACCCATC 58.029 41.667 4.11 0.00 33.65 3.51
171 172 5.521010 CGTTTAACGCTCTAATTACCCATCA 59.479 40.000 4.11 0.00 33.65 3.07
172 173 6.509039 CGTTTAACGCTCTAATTACCCATCAC 60.509 42.308 4.11 0.00 33.65 3.06
173 174 4.755266 AACGCTCTAATTACCCATCACT 57.245 40.909 0.00 0.00 0.00 3.41
174 175 4.060038 ACGCTCTAATTACCCATCACTG 57.940 45.455 0.00 0.00 0.00 3.66
175 176 3.451178 ACGCTCTAATTACCCATCACTGT 59.549 43.478 0.00 0.00 0.00 3.55
176 177 4.051922 CGCTCTAATTACCCATCACTGTC 58.948 47.826 0.00 0.00 0.00 3.51
177 178 4.441495 CGCTCTAATTACCCATCACTGTCA 60.441 45.833 0.00 0.00 0.00 3.58
178 179 5.615289 GCTCTAATTACCCATCACTGTCAT 58.385 41.667 0.00 0.00 0.00 3.06
179 180 6.058183 GCTCTAATTACCCATCACTGTCATT 58.942 40.000 0.00 0.00 0.00 2.57
180 181 6.017605 GCTCTAATTACCCATCACTGTCATTG 60.018 42.308 0.00 0.00 0.00 2.82
181 182 6.356556 TCTAATTACCCATCACTGTCATTGG 58.643 40.000 0.00 0.00 0.00 3.16
182 183 4.591321 ATTACCCATCACTGTCATTGGT 57.409 40.909 0.00 0.00 0.00 3.67
183 184 2.978156 ACCCATCACTGTCATTGGTT 57.022 45.000 0.00 0.00 0.00 3.67
184 185 5.506730 TTACCCATCACTGTCATTGGTTA 57.493 39.130 0.00 0.00 0.00 2.85
185 186 4.591321 ACCCATCACTGTCATTGGTTAT 57.409 40.909 0.00 0.00 0.00 1.89
186 187 5.708736 ACCCATCACTGTCATTGGTTATA 57.291 39.130 0.00 0.00 0.00 0.98
187 188 6.073447 ACCCATCACTGTCATTGGTTATAA 57.927 37.500 0.00 0.00 0.00 0.98
188 189 6.489603 ACCCATCACTGTCATTGGTTATAAA 58.510 36.000 0.00 0.00 0.00 1.40
189 190 6.377146 ACCCATCACTGTCATTGGTTATAAAC 59.623 38.462 0.00 0.00 0.00 2.01
190 191 6.376864 CCCATCACTGTCATTGGTTATAAACA 59.623 38.462 0.00 0.00 0.00 2.83
191 192 7.250569 CCATCACTGTCATTGGTTATAAACAC 58.749 38.462 1.72 0.00 0.00 3.32
192 193 6.474819 TCACTGTCATTGGTTATAAACACG 57.525 37.500 1.72 0.00 0.00 4.49
193 194 5.992829 TCACTGTCATTGGTTATAAACACGT 59.007 36.000 1.72 0.00 0.00 4.49
194 195 6.483974 TCACTGTCATTGGTTATAAACACGTT 59.516 34.615 1.72 0.00 0.00 3.99
195 196 7.012515 TCACTGTCATTGGTTATAAACACGTTT 59.987 33.333 1.72 0.22 36.63 3.60
196 197 7.646130 CACTGTCATTGGTTATAAACACGTTTT 59.354 33.333 1.72 0.00 34.23 2.43
197 198 7.646130 ACTGTCATTGGTTATAAACACGTTTTG 59.354 33.333 1.72 0.00 34.23 2.44
198 199 7.704271 TGTCATTGGTTATAAACACGTTTTGA 58.296 30.769 1.72 0.00 34.23 2.69
199 200 7.644551 TGTCATTGGTTATAAACACGTTTTGAC 59.355 33.333 1.72 11.37 34.23 3.18
200 201 7.858879 GTCATTGGTTATAAACACGTTTTGACT 59.141 33.333 1.72 0.00 34.23 3.41
201 202 8.071368 TCATTGGTTATAAACACGTTTTGACTC 58.929 33.333 1.72 0.00 34.23 3.36
202 203 6.922247 TGGTTATAAACACGTTTTGACTCA 57.078 33.333 0.00 0.00 34.23 3.41
203 204 7.317842 TGGTTATAAACACGTTTTGACTCAA 57.682 32.000 0.00 0.00 34.23 3.02
204 205 7.188157 TGGTTATAAACACGTTTTGACTCAAC 58.812 34.615 0.00 0.00 34.23 3.18
205 206 7.148289 TGGTTATAAACACGTTTTGACTCAACA 60.148 33.333 0.00 0.00 34.23 3.33
206 207 7.164662 GGTTATAAACACGTTTTGACTCAACAC 59.835 37.037 0.00 0.00 34.23 3.32
207 208 4.759516 AAACACGTTTTGACTCAACACT 57.240 36.364 6.52 0.00 0.00 3.55
208 209 5.866335 AAACACGTTTTGACTCAACACTA 57.134 34.783 6.52 0.00 0.00 2.74
209 210 6.431198 AAACACGTTTTGACTCAACACTAT 57.569 33.333 6.52 0.00 0.00 2.12
210 211 5.652744 ACACGTTTTGACTCAACACTATC 57.347 39.130 6.52 0.00 0.00 2.08
211 212 4.510340 ACACGTTTTGACTCAACACTATCC 59.490 41.667 6.52 0.00 0.00 2.59
212 213 4.062991 ACGTTTTGACTCAACACTATCCC 58.937 43.478 6.52 0.00 0.00 3.85
213 214 4.202326 ACGTTTTGACTCAACACTATCCCT 60.202 41.667 6.52 0.00 0.00 4.20
214 215 4.755123 CGTTTTGACTCAACACTATCCCTT 59.245 41.667 6.52 0.00 0.00 3.95
215 216 5.334105 CGTTTTGACTCAACACTATCCCTTG 60.334 44.000 6.52 0.00 0.00 3.61
216 217 5.560722 TTTGACTCAACACTATCCCTTGA 57.439 39.130 0.00 0.00 0.00 3.02
217 218 5.560722 TTGACTCAACACTATCCCTTGAA 57.439 39.130 0.00 0.00 0.00 2.69
218 219 5.560722 TGACTCAACACTATCCCTTGAAA 57.439 39.130 0.00 0.00 0.00 2.69
219 220 6.126863 TGACTCAACACTATCCCTTGAAAT 57.873 37.500 0.00 0.00 0.00 2.17
220 221 6.542821 TGACTCAACACTATCCCTTGAAATT 58.457 36.000 0.00 0.00 0.00 1.82
221 222 7.004086 TGACTCAACACTATCCCTTGAAATTT 58.996 34.615 0.00 0.00 0.00 1.82
222 223 7.040478 TGACTCAACACTATCCCTTGAAATTTG 60.040 37.037 0.00 0.00 0.00 2.32
223 224 6.024552 TCAACACTATCCCTTGAAATTTGC 57.975 37.500 0.00 0.00 0.00 3.68
224 225 5.047377 TCAACACTATCCCTTGAAATTTGCC 60.047 40.000 0.00 0.00 0.00 4.52
225 226 4.415596 ACACTATCCCTTGAAATTTGCCA 58.584 39.130 0.00 0.00 0.00 4.92
226 227 5.025453 ACACTATCCCTTGAAATTTGCCAT 58.975 37.500 0.00 0.00 0.00 4.40
227 228 6.194235 ACACTATCCCTTGAAATTTGCCATA 58.806 36.000 0.00 0.00 0.00 2.74
228 229 6.840705 ACACTATCCCTTGAAATTTGCCATAT 59.159 34.615 0.00 0.00 0.00 1.78
229 230 8.004215 ACACTATCCCTTGAAATTTGCCATATA 58.996 33.333 0.00 0.00 0.00 0.86
230 231 8.859090 CACTATCCCTTGAAATTTGCCATATAA 58.141 33.333 0.00 0.00 0.00 0.98
231 232 9.605951 ACTATCCCTTGAAATTTGCCATATAAT 57.394 29.630 0.00 0.00 0.00 1.28
259 260 9.614792 AATATCTTACTATTCCTGCGAAAAAGT 57.385 29.630 0.00 0.00 34.45 2.66
260 261 6.721571 TCTTACTATTCCTGCGAAAAAGTG 57.278 37.500 0.00 0.00 33.04 3.16
261 262 6.460781 TCTTACTATTCCTGCGAAAAAGTGA 58.539 36.000 0.00 0.00 33.04 3.41
262 263 7.103641 TCTTACTATTCCTGCGAAAAAGTGAT 58.896 34.615 0.00 0.00 33.04 3.06
263 264 7.606456 TCTTACTATTCCTGCGAAAAAGTGATT 59.394 33.333 0.00 0.00 33.04 2.57
264 265 5.942872 ACTATTCCTGCGAAAAAGTGATTG 58.057 37.500 0.00 0.00 30.90 2.67
265 266 5.705441 ACTATTCCTGCGAAAAAGTGATTGA 59.295 36.000 0.00 0.00 30.90 2.57
266 267 5.649782 ATTCCTGCGAAAAAGTGATTGAT 57.350 34.783 0.00 0.00 0.00 2.57
267 268 6.757897 ATTCCTGCGAAAAAGTGATTGATA 57.242 33.333 0.00 0.00 0.00 2.15
268 269 6.757897 TTCCTGCGAAAAAGTGATTGATAT 57.242 33.333 0.00 0.00 0.00 1.63
269 270 6.363577 TCCTGCGAAAAAGTGATTGATATC 57.636 37.500 0.00 0.00 0.00 1.63
270 271 6.115446 TCCTGCGAAAAAGTGATTGATATCT 58.885 36.000 3.98 0.00 0.00 1.98
271 272 6.599244 TCCTGCGAAAAAGTGATTGATATCTT 59.401 34.615 3.98 0.00 0.00 2.40
272 273 7.768582 TCCTGCGAAAAAGTGATTGATATCTTA 59.231 33.333 3.98 0.00 0.00 2.10
273 274 7.852945 CCTGCGAAAAAGTGATTGATATCTTAC 59.147 37.037 3.98 0.00 0.00 2.34
274 275 7.693952 TGCGAAAAAGTGATTGATATCTTACC 58.306 34.615 3.98 0.00 0.00 2.85
275 276 7.335673 TGCGAAAAAGTGATTGATATCTTACCA 59.664 33.333 3.98 0.00 0.00 3.25
276 277 8.181573 GCGAAAAAGTGATTGATATCTTACCAA 58.818 33.333 3.98 0.00 0.00 3.67
282 283 9.851686 AAGTGATTGATATCTTACCAAATAGCA 57.148 29.630 3.98 0.00 0.00 3.49
283 284 9.851686 AGTGATTGATATCTTACCAAATAGCAA 57.148 29.630 3.98 0.00 37.92 3.91
284 285 9.884465 GTGATTGATATCTTACCAAATAGCAAC 57.116 33.333 3.98 0.00 36.79 4.17
285 286 9.625747 TGATTGATATCTTACCAAATAGCAACA 57.374 29.630 3.98 0.00 36.79 3.33
288 289 7.874940 TGATATCTTACCAAATAGCAACATGC 58.125 34.615 3.98 0.00 45.46 4.06
306 307 9.388506 GCAACATGCAATAGATATATCTTACCT 57.611 33.333 20.13 0.00 44.26 3.08
322 323 7.958053 ATCTTACCTAATATAACGTGCAACC 57.042 36.000 0.00 0.00 0.00 3.77
323 324 6.876155 TCTTACCTAATATAACGTGCAACCA 58.124 36.000 0.00 0.00 0.00 3.67
324 325 7.329499 TCTTACCTAATATAACGTGCAACCAA 58.671 34.615 0.00 0.00 0.00 3.67
325 326 5.806366 ACCTAATATAACGTGCAACCAAC 57.194 39.130 0.00 0.00 0.00 3.77
326 327 5.247084 ACCTAATATAACGTGCAACCAACA 58.753 37.500 0.00 0.00 0.00 3.33
327 328 5.883673 ACCTAATATAACGTGCAACCAACAT 59.116 36.000 0.00 0.00 0.00 2.71
328 329 6.037830 ACCTAATATAACGTGCAACCAACATC 59.962 38.462 0.00 0.00 0.00 3.06
329 330 4.893424 ATATAACGTGCAACCAACATCC 57.107 40.909 0.00 0.00 0.00 3.51
330 331 2.264005 TAACGTGCAACCAACATCCT 57.736 45.000 0.00 0.00 0.00 3.24
331 332 2.264005 AACGTGCAACCAACATCCTA 57.736 45.000 0.00 0.00 0.00 2.94
332 333 1.519408 ACGTGCAACCAACATCCTAC 58.481 50.000 0.00 0.00 0.00 3.18
333 334 0.802494 CGTGCAACCAACATCCTACC 59.198 55.000 0.00 0.00 0.00 3.18
334 335 1.610624 CGTGCAACCAACATCCTACCT 60.611 52.381 0.00 0.00 0.00 3.08
335 336 2.354303 CGTGCAACCAACATCCTACCTA 60.354 50.000 0.00 0.00 0.00 3.08
336 337 3.681593 GTGCAACCAACATCCTACCTAA 58.318 45.455 0.00 0.00 0.00 2.69
337 338 4.270008 GTGCAACCAACATCCTACCTAAT 58.730 43.478 0.00 0.00 0.00 1.73
338 339 5.433526 GTGCAACCAACATCCTACCTAATA 58.566 41.667 0.00 0.00 0.00 0.98
339 340 6.062095 GTGCAACCAACATCCTACCTAATAT 58.938 40.000 0.00 0.00 0.00 1.28
340 341 7.221450 GTGCAACCAACATCCTACCTAATATA 58.779 38.462 0.00 0.00 0.00 0.86
341 342 7.717875 GTGCAACCAACATCCTACCTAATATAA 59.282 37.037 0.00 0.00 0.00 0.98
342 343 8.275758 TGCAACCAACATCCTACCTAATATAAA 58.724 33.333 0.00 0.00 0.00 1.40
343 344 8.565416 GCAACCAACATCCTACCTAATATAAAC 58.435 37.037 0.00 0.00 0.00 2.01
344 345 8.770828 CAACCAACATCCTACCTAATATAAACG 58.229 37.037 0.00 0.00 0.00 3.60
345 346 8.026396 ACCAACATCCTACCTAATATAAACGT 57.974 34.615 0.00 0.00 0.00 3.99
346 347 7.929785 ACCAACATCCTACCTAATATAAACGTG 59.070 37.037 0.00 0.00 0.00 4.49
347 348 7.095355 CCAACATCCTACCTAATATAAACGTGC 60.095 40.741 0.00 0.00 0.00 5.34
348 349 7.058023 ACATCCTACCTAATATAAACGTGCA 57.942 36.000 0.00 0.00 0.00 4.57
349 350 7.676947 ACATCCTACCTAATATAAACGTGCAT 58.323 34.615 0.00 0.00 0.00 3.96
350 351 8.154856 ACATCCTACCTAATATAAACGTGCATT 58.845 33.333 0.00 0.00 0.00 3.56
351 352 7.956420 TCCTACCTAATATAAACGTGCATTG 57.044 36.000 0.00 0.00 0.00 2.82
352 353 6.425721 TCCTACCTAATATAAACGTGCATTGC 59.574 38.462 0.46 0.46 0.00 3.56
353 354 6.203915 CCTACCTAATATAAACGTGCATTGCA 59.796 38.462 7.38 7.38 35.60 4.08
369 370 7.172654 TGCATTGCACGTACATTATTACTAG 57.827 36.000 7.38 0.00 31.71 2.57
370 371 6.759356 TGCATTGCACGTACATTATTACTAGT 59.241 34.615 7.38 0.00 31.71 2.57
371 372 7.042992 TGCATTGCACGTACATTATTACTAGTC 60.043 37.037 7.38 0.00 31.71 2.59
372 373 7.169308 GCATTGCACGTACATTATTACTAGTCT 59.831 37.037 0.00 0.00 0.00 3.24
373 374 9.673454 CATTGCACGTACATTATTACTAGTCTA 57.327 33.333 0.00 0.00 0.00 2.59
375 376 9.507280 TTGCACGTACATTATTACTAGTCTAAC 57.493 33.333 0.00 0.00 0.00 2.34
376 377 8.896744 TGCACGTACATTATTACTAGTCTAACT 58.103 33.333 0.00 0.00 0.00 2.24
388 389 8.868522 TTACTAGTCTAACTAAAGGCACTACA 57.131 34.615 0.00 0.00 38.49 2.74
389 390 7.957992 ACTAGTCTAACTAAAGGCACTACAT 57.042 36.000 0.00 0.00 38.49 2.29
390 391 7.773149 ACTAGTCTAACTAAAGGCACTACATG 58.227 38.462 0.00 0.00 38.49 3.21
391 392 6.697892 CTAGTCTAACTAAAGGCACTACATGC 59.302 42.308 0.00 0.00 41.05 4.06
392 393 7.630728 CTAGTCTAACTAAAGGCACTACATGCA 60.631 40.741 0.77 0.00 42.46 3.96
405 406 6.659361 CACTACATGCATATCTAATGCTCC 57.341 41.667 0.00 0.00 44.79 4.70
406 407 5.583854 CACTACATGCATATCTAATGCTCCC 59.416 44.000 0.00 0.00 44.79 4.30
407 408 4.923516 ACATGCATATCTAATGCTCCCT 57.076 40.909 0.00 0.00 44.79 4.20
408 409 4.841422 ACATGCATATCTAATGCTCCCTC 58.159 43.478 0.00 0.00 44.79 4.30
409 410 3.599730 TGCATATCTAATGCTCCCTCG 57.400 47.619 10.95 0.00 44.79 4.63
410 411 2.234661 TGCATATCTAATGCTCCCTCGG 59.765 50.000 10.95 0.00 44.79 4.63
411 412 2.497675 GCATATCTAATGCTCCCTCGGA 59.502 50.000 2.78 0.00 41.52 4.55
412 413 3.677424 GCATATCTAATGCTCCCTCGGAC 60.677 52.174 2.78 0.00 41.52 4.79
413 414 0.962489 ATCTAATGCTCCCTCGGACG 59.038 55.000 0.00 0.00 0.00 4.79
414 415 1.300233 CTAATGCTCCCTCGGACGC 60.300 63.158 0.00 0.00 0.00 5.19
415 416 2.701163 CTAATGCTCCCTCGGACGCC 62.701 65.000 0.00 0.00 0.00 5.68
422 423 4.016706 CCTCGGACGCCCAGGTTT 62.017 66.667 2.21 0.00 0.00 3.27
423 424 2.032071 CTCGGACGCCCAGGTTTT 59.968 61.111 0.00 0.00 0.00 2.43
424 425 2.031465 TCGGACGCCCAGGTTTTC 59.969 61.111 0.00 0.00 0.00 2.29
425 426 3.419759 CGGACGCCCAGGTTTTCG 61.420 66.667 0.00 0.00 0.00 3.46
426 427 3.053896 GGACGCCCAGGTTTTCGG 61.054 66.667 0.00 0.00 0.00 4.30
427 428 2.281276 GACGCCCAGGTTTTCGGT 60.281 61.111 0.00 0.00 0.00 4.69
428 429 1.004679 GACGCCCAGGTTTTCGGTA 60.005 57.895 0.00 0.00 0.00 4.02
429 430 0.603439 GACGCCCAGGTTTTCGGTAA 60.603 55.000 0.00 0.00 0.00 2.85
430 431 0.037160 ACGCCCAGGTTTTCGGTAAT 59.963 50.000 0.00 0.00 0.00 1.89
431 432 1.170442 CGCCCAGGTTTTCGGTAATT 58.830 50.000 0.00 0.00 0.00 1.40
432 433 2.290197 ACGCCCAGGTTTTCGGTAATTA 60.290 45.455 0.00 0.00 0.00 1.40
433 434 2.096335 CGCCCAGGTTTTCGGTAATTAC 59.904 50.000 7.09 7.09 0.00 1.89
434 435 3.083293 GCCCAGGTTTTCGGTAATTACA 58.917 45.455 17.16 0.00 0.00 2.41
435 436 3.506844 GCCCAGGTTTTCGGTAATTACAA 59.493 43.478 17.16 1.32 0.00 2.41
436 437 4.380128 GCCCAGGTTTTCGGTAATTACAAG 60.380 45.833 17.16 10.36 0.00 3.16
437 438 4.380128 CCCAGGTTTTCGGTAATTACAAGC 60.380 45.833 17.16 11.60 0.00 4.01
438 439 4.216687 CCAGGTTTTCGGTAATTACAAGCA 59.783 41.667 17.16 0.00 0.00 3.91
439 440 5.151389 CAGGTTTTCGGTAATTACAAGCAC 58.849 41.667 17.16 6.76 0.00 4.40
440 441 5.048991 CAGGTTTTCGGTAATTACAAGCACT 60.049 40.000 17.16 3.83 0.00 4.40
441 442 5.180680 AGGTTTTCGGTAATTACAAGCACTC 59.819 40.000 17.16 2.51 0.00 3.51
442 443 5.180680 GGTTTTCGGTAATTACAAGCACTCT 59.819 40.000 17.16 0.00 0.00 3.24
443 444 6.293790 GGTTTTCGGTAATTACAAGCACTCTT 60.294 38.462 17.16 0.00 0.00 2.85
444 445 7.095102 GGTTTTCGGTAATTACAAGCACTCTTA 60.095 37.037 17.16 0.00 0.00 2.10
445 446 7.591006 TTTCGGTAATTACAAGCACTCTTAG 57.409 36.000 17.16 0.00 0.00 2.18
446 447 6.519679 TCGGTAATTACAAGCACTCTTAGA 57.480 37.500 17.16 0.00 0.00 2.10
447 448 6.927416 TCGGTAATTACAAGCACTCTTAGAA 58.073 36.000 17.16 0.00 0.00 2.10
448 449 7.380536 TCGGTAATTACAAGCACTCTTAGAAA 58.619 34.615 17.16 0.00 0.00 2.52
449 450 7.330208 TCGGTAATTACAAGCACTCTTAGAAAC 59.670 37.037 17.16 0.00 0.00 2.78
450 451 7.412672 CGGTAATTACAAGCACTCTTAGAAACC 60.413 40.741 17.16 0.00 0.00 3.27
464 465 9.628500 ACTCTTAGAAACCAGTTTACTTGATTT 57.372 29.630 0.00 0.00 32.11 2.17
465 466 9.884465 CTCTTAGAAACCAGTTTACTTGATTTG 57.116 33.333 0.00 0.00 32.11 2.32
468 469 3.915437 ACCAGTTTACTTGATTTGGCG 57.085 42.857 0.00 0.00 0.00 5.69
473 474 3.252458 AGTTTACTTGATTTGGCGTGGAC 59.748 43.478 0.00 0.00 0.00 4.02
493 494 3.371965 ACGACCTGATATGTAACACCCT 58.628 45.455 0.00 0.00 0.00 4.34
494 495 3.383825 ACGACCTGATATGTAACACCCTC 59.616 47.826 0.00 0.00 0.00 4.30
495 496 3.550233 CGACCTGATATGTAACACCCTCG 60.550 52.174 0.00 0.00 0.00 4.63
496 497 3.371965 ACCTGATATGTAACACCCTCGT 58.628 45.455 0.00 0.00 0.00 4.18
497 498 3.132289 ACCTGATATGTAACACCCTCGTG 59.868 47.826 0.00 0.00 46.11 4.35
498 499 3.123804 CTGATATGTAACACCCTCGTGC 58.876 50.000 0.00 0.00 44.40 5.34
499 500 2.764010 TGATATGTAACACCCTCGTGCT 59.236 45.455 0.00 0.00 44.40 4.40
500 501 2.665649 TATGTAACACCCTCGTGCTG 57.334 50.000 0.00 0.00 44.40 4.41
501 502 0.673644 ATGTAACACCCTCGTGCTGC 60.674 55.000 0.00 0.00 44.40 5.25
502 503 1.004918 GTAACACCCTCGTGCTGCT 60.005 57.895 0.00 0.00 44.40 4.24
503 504 1.014564 GTAACACCCTCGTGCTGCTC 61.015 60.000 0.00 0.00 44.40 4.26
504 505 2.486636 TAACACCCTCGTGCTGCTCG 62.487 60.000 17.08 17.08 44.40 5.03
505 506 4.056125 CACCCTCGTGCTGCTCGA 62.056 66.667 23.04 23.04 32.04 4.04
519 520 3.592070 TCGAGGACGAAGGCTCTG 58.408 61.111 0.00 0.00 45.74 3.35
520 521 2.202676 CGAGGACGAAGGCTCTGC 60.203 66.667 0.00 0.00 42.66 4.26
521 522 2.202676 GAGGACGAAGGCTCTGCG 60.203 66.667 1.46 1.46 38.69 5.18
522 523 3.708220 GAGGACGAAGGCTCTGCGG 62.708 68.421 7.39 0.00 36.73 5.69
523 524 3.760035 GGACGAAGGCTCTGCGGA 61.760 66.667 7.39 0.00 36.73 5.54
524 525 2.507324 GACGAAGGCTCTGCGGAC 60.507 66.667 7.39 0.00 36.73 4.79
525 526 2.992114 ACGAAGGCTCTGCGGACT 60.992 61.111 7.39 0.00 36.73 3.85
526 527 2.202676 CGAAGGCTCTGCGGACTC 60.203 66.667 0.00 0.00 0.00 3.36
527 528 2.973899 GAAGGCTCTGCGGACTCA 59.026 61.111 0.00 0.00 0.00 3.41
528 529 1.519719 GAAGGCTCTGCGGACTCAT 59.480 57.895 0.00 0.00 0.00 2.90
529 530 0.529555 GAAGGCTCTGCGGACTCATC 60.530 60.000 0.00 0.00 0.00 2.92
530 531 2.279120 GGCTCTGCGGACTCATCG 60.279 66.667 0.00 0.00 0.00 3.84
531 532 2.492090 GCTCTGCGGACTCATCGT 59.508 61.111 0.00 0.00 0.00 3.73
532 533 1.587613 GCTCTGCGGACTCATCGTC 60.588 63.158 0.00 0.00 42.07 4.20
533 534 1.297967 CTCTGCGGACTCATCGTCG 60.298 63.158 0.00 0.00 43.79 5.12
534 535 1.706287 CTCTGCGGACTCATCGTCGA 61.706 60.000 0.00 0.00 43.79 4.20
535 536 1.583967 CTGCGGACTCATCGTCGAC 60.584 63.158 5.18 5.18 43.79 4.20
536 537 2.648102 GCGGACTCATCGTCGACG 60.648 66.667 31.30 31.30 43.79 5.12
537 538 2.022902 CGGACTCATCGTCGACGG 59.977 66.667 35.05 22.18 43.79 4.79
538 539 2.278013 GGACTCATCGTCGACGGC 60.278 66.667 35.05 17.79 43.79 5.68
539 540 2.648102 GACTCATCGTCGACGGCG 60.648 66.667 35.05 25.74 40.29 6.46
540 541 4.175489 ACTCATCGTCGACGGCGG 62.175 66.667 35.05 24.08 40.29 6.13
588 589 1.521681 GCCCCTGCACTAGCTAACG 60.522 63.158 0.00 0.00 42.74 3.18
593 594 0.867753 CTGCACTAGCTAACGGCGAG 60.868 60.000 16.62 1.58 46.71 5.03
594 595 2.231618 GCACTAGCTAACGGCGAGC 61.232 63.158 16.62 13.98 45.52 5.03
603 604 0.454957 TAACGGCGAGCTTCACGTAC 60.455 55.000 16.62 0.00 38.79 3.67
629 661 3.985019 TTTTTAGGGGATCACGCACTA 57.015 42.857 0.00 0.00 33.80 2.74
630 662 2.973694 TTTAGGGGATCACGCACTAC 57.026 50.000 0.00 0.00 33.80 2.73
631 663 1.855295 TTAGGGGATCACGCACTACA 58.145 50.000 0.00 0.00 33.80 2.74
662 2137 8.469309 AGTGTGACCTTTAACTAACACTACTA 57.531 34.615 4.54 0.00 44.66 1.82
680 2158 7.376615 CACTACTAGTGCCTTTAACTAACACT 58.623 38.462 5.39 0.00 39.62 3.55
681 2159 8.517878 CACTACTAGTGCCTTTAACTAACACTA 58.482 37.037 5.39 0.00 39.62 2.74
700 2178 8.946797 AACACTACTACTAGGAGTTTTAAGGA 57.053 34.615 14.24 0.00 0.00 3.36
717 2203 4.569719 AAGGATGTTTACCCGATCTGTT 57.430 40.909 0.00 0.00 0.00 3.16
758 2249 1.135517 TCAAGATTTTAAAGCGGCGGC 60.136 47.619 9.78 8.43 40.37 6.53
777 2268 2.479219 GGCTAGTACTCTTGCACGGTAC 60.479 54.545 0.00 12.40 42.46 3.34
789 2280 1.405461 CACGGTACAAGACAGACACG 58.595 55.000 0.00 0.00 0.00 4.49
804 2295 4.778415 ACGCGCACGCCAGTAGAG 62.778 66.667 5.73 0.00 45.53 2.43
805 2296 4.476410 CGCGCACGCCAGTAGAGA 62.476 66.667 8.75 0.00 37.98 3.10
806 2297 2.580867 GCGCACGCCAGTAGAGAG 60.581 66.667 0.30 0.00 34.56 3.20
807 2298 2.103143 CGCACGCCAGTAGAGAGG 59.897 66.667 0.00 0.00 0.00 3.69
808 2299 2.496817 GCACGCCAGTAGAGAGGG 59.503 66.667 0.00 0.00 0.00 4.30
809 2300 2.052690 GCACGCCAGTAGAGAGGGA 61.053 63.158 0.00 0.00 0.00 4.20
810 2301 1.605058 GCACGCCAGTAGAGAGGGAA 61.605 60.000 0.00 0.00 0.00 3.97
811 2302 0.173708 CACGCCAGTAGAGAGGGAAC 59.826 60.000 0.00 0.00 0.00 3.62
848 2340 3.557577 TCACAACGCTGAATCATTTGG 57.442 42.857 0.00 0.00 0.00 3.28
894 2386 4.882396 TGGACACCCACCGACCCA 62.882 66.667 0.00 0.00 37.58 4.51
895 2387 4.324991 GGACACCCACCGACCCAC 62.325 72.222 0.00 0.00 0.00 4.61
934 2426 2.031516 GATCGATCCGCCATGGCTG 61.032 63.158 33.07 27.27 39.32 4.85
935 2427 2.721971 GATCGATCCGCCATGGCTGT 62.722 60.000 33.07 19.02 39.32 4.40
936 2428 1.471829 ATCGATCCGCCATGGCTGTA 61.472 55.000 33.07 18.84 39.32 2.74
937 2429 1.004560 CGATCCGCCATGGCTGTAT 60.005 57.895 33.07 22.48 39.32 2.29
938 2430 1.016130 CGATCCGCCATGGCTGTATC 61.016 60.000 33.07 27.10 39.32 2.24
939 2431 0.322975 GATCCGCCATGGCTGTATCT 59.677 55.000 33.07 13.80 39.32 1.98
950 2442 5.942236 CCATGGCTGTATCTGTATAAATGCT 59.058 40.000 0.00 0.00 0.00 3.79
1186 2692 7.968405 GTGAGTATTATTGCCACTTAGTTTTGG 59.032 37.037 0.00 0.00 35.81 3.28
1380 2916 0.462047 GCATCCACTAAGGTGACGGG 60.462 60.000 0.00 0.00 45.61 5.28
1387 2923 3.340034 CACTAAGGTGACGGGCAAATAA 58.660 45.455 0.00 0.00 45.61 1.40
1390 2926 3.366052 AAGGTGACGGGCAAATAAGAT 57.634 42.857 0.00 0.00 0.00 2.40
1392 2928 1.676006 GGTGACGGGCAAATAAGATGG 59.324 52.381 0.00 0.00 0.00 3.51
1401 2938 5.574188 GGGCAAATAAGATGGATCCACTAT 58.426 41.667 18.99 11.48 0.00 2.12
1488 3035 0.557238 ATGCCACCATGGGAAGCATA 59.443 50.000 27.35 9.99 42.59 3.14
1489 3036 0.106569 TGCCACCATGGGAAGCATAG 60.107 55.000 18.09 0.00 33.84 2.23
1490 3037 1.458639 GCCACCATGGGAAGCATAGC 61.459 60.000 18.09 2.88 38.19 2.97
1491 3038 0.106569 CCACCATGGGAAGCATAGCA 60.107 55.000 18.09 0.00 32.67 3.49
1492 3039 1.479942 CCACCATGGGAAGCATAGCAT 60.480 52.381 18.09 0.00 32.67 3.79
1533 3088 5.097529 TGGTCTGTTTCGACGTATATGTTC 58.902 41.667 0.00 0.00 34.75 3.18
1564 3119 4.744570 ACTCGATCTCGCTGAAATGTTAA 58.255 39.130 0.00 0.00 39.60 2.01
1603 5013 3.163594 GCACACGTTTTTATGCTAGCTG 58.836 45.455 17.23 4.76 35.16 4.24
1691 5137 8.958119 AAGAATTTTGAATGGTAGCGACTATA 57.042 30.769 0.00 0.00 0.00 1.31
1700 5146 7.985184 TGAATGGTAGCGACTATAAAGTTCAAT 59.015 33.333 0.00 0.00 35.56 2.57
1738 5186 2.417933 GCTCGATTGTGATGATATGGGC 59.582 50.000 0.00 0.00 0.00 5.36
1757 5205 1.884926 CGAGAAGCCAGGGATTCGC 60.885 63.158 10.37 9.97 44.25 4.70
1774 5222 6.261381 GGGATTCGCTGTAACCAATAATTGTA 59.739 38.462 0.00 0.00 0.00 2.41
1779 5227 5.448089 CGCTGTAACCAATAATTGTACACCC 60.448 44.000 0.00 0.00 0.00 4.61
1811 5259 7.308435 GTTCATCTTAGAACAAGGTCAAATGG 58.692 38.462 0.00 0.00 45.53 3.16
1812 5260 6.542821 TCATCTTAGAACAAGGTCAAATGGT 58.457 36.000 0.00 0.00 0.00 3.55
1813 5261 7.685481 TCATCTTAGAACAAGGTCAAATGGTA 58.315 34.615 0.00 0.00 0.00 3.25
1814 5262 8.160765 TCATCTTAGAACAAGGTCAAATGGTAA 58.839 33.333 0.00 0.00 0.00 2.85
1815 5263 7.739498 TCTTAGAACAAGGTCAAATGGTAAC 57.261 36.000 0.00 0.00 0.00 2.50
1816 5264 6.425721 TCTTAGAACAAGGTCAAATGGTAACG 59.574 38.462 0.00 0.00 42.51 3.18
1817 5265 3.818773 AGAACAAGGTCAAATGGTAACGG 59.181 43.478 0.00 0.00 42.51 4.44
1818 5266 1.883926 ACAAGGTCAAATGGTAACGGC 59.116 47.619 0.00 0.00 42.51 5.68
1819 5267 1.201414 CAAGGTCAAATGGTAACGGCC 59.799 52.381 0.00 0.00 42.51 6.13
1820 5268 0.696501 AGGTCAAATGGTAACGGCCT 59.303 50.000 0.00 0.00 42.51 5.19
1821 5269 1.910671 AGGTCAAATGGTAACGGCCTA 59.089 47.619 0.00 0.00 42.51 3.93
1822 5270 2.093128 AGGTCAAATGGTAACGGCCTAG 60.093 50.000 0.00 0.00 42.51 3.02
1823 5271 2.093341 GGTCAAATGGTAACGGCCTAGA 60.093 50.000 0.00 0.00 42.51 2.43
1824 5272 3.195661 GTCAAATGGTAACGGCCTAGAG 58.804 50.000 0.00 0.00 42.51 2.43
1825 5273 3.101437 TCAAATGGTAACGGCCTAGAGA 58.899 45.455 0.00 0.00 42.51 3.10
1826 5274 3.516300 TCAAATGGTAACGGCCTAGAGAA 59.484 43.478 0.00 0.00 42.51 2.87
1827 5275 3.538634 AATGGTAACGGCCTAGAGAAC 57.461 47.619 0.00 0.00 42.51 3.01
1828 5276 2.226962 TGGTAACGGCCTAGAGAACT 57.773 50.000 0.00 0.00 42.51 3.01
1853 5301 0.250597 AGTCACTTTTACCGGCACCC 60.251 55.000 0.00 0.00 0.00 4.61
1956 5411 4.027674 TCTGGCTTTAAGTGTTGGCATA 57.972 40.909 0.00 0.00 34.59 3.14
1968 5423 6.491714 AGTGTTGGCATATCTCTCTTATGT 57.508 37.500 0.00 0.00 31.13 2.29
2033 5491 8.884124 ATCCTTCTATTTTTCTTTCACATGGA 57.116 30.769 0.00 0.00 0.00 3.41
2069 5531 2.523325 TTCACTCTCTCCTCTCCCAG 57.477 55.000 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.458206 GCAAATGTAATGCAGGATAGTCGAAA 60.458 38.462 0.00 0.00 43.29 3.46
1 2 5.007626 GCAAATGTAATGCAGGATAGTCGAA 59.992 40.000 0.00 0.00 43.29 3.71
2 3 4.511454 GCAAATGTAATGCAGGATAGTCGA 59.489 41.667 0.00 0.00 43.29 4.20
3 4 4.512944 AGCAAATGTAATGCAGGATAGTCG 59.487 41.667 0.00 0.00 46.22 4.18
4 5 6.382869 AAGCAAATGTAATGCAGGATAGTC 57.617 37.500 0.00 0.00 46.22 2.59
5 6 6.780457 AAAGCAAATGTAATGCAGGATAGT 57.220 33.333 0.00 0.00 46.22 2.12
56 57 9.844257 TTTGAATCTGTTCATTTGGGTATTTTT 57.156 25.926 0.00 0.00 43.49 1.94
57 58 9.271828 GTTTGAATCTGTTCATTTGGGTATTTT 57.728 29.630 0.00 0.00 43.49 1.82
58 59 7.877612 GGTTTGAATCTGTTCATTTGGGTATTT 59.122 33.333 0.00 0.00 43.49 1.40
59 60 7.016072 TGGTTTGAATCTGTTCATTTGGGTATT 59.984 33.333 0.00 0.00 43.49 1.89
60 61 6.496565 TGGTTTGAATCTGTTCATTTGGGTAT 59.503 34.615 0.00 0.00 43.49 2.73
61 62 5.835819 TGGTTTGAATCTGTTCATTTGGGTA 59.164 36.000 0.00 0.00 43.49 3.69
62 63 4.653341 TGGTTTGAATCTGTTCATTTGGGT 59.347 37.500 0.00 0.00 43.49 4.51
63 64 5.212532 TGGTTTGAATCTGTTCATTTGGG 57.787 39.130 0.00 0.00 43.49 4.12
64 65 6.694447 AGATGGTTTGAATCTGTTCATTTGG 58.306 36.000 0.00 0.00 43.49 3.28
65 66 7.868922 TCAAGATGGTTTGAATCTGTTCATTTG 59.131 33.333 0.00 0.00 43.49 2.32
66 67 7.869429 GTCAAGATGGTTTGAATCTGTTCATTT 59.131 33.333 0.00 0.00 43.49 2.32
67 68 7.373493 GTCAAGATGGTTTGAATCTGTTCATT 58.627 34.615 0.00 0.00 43.49 2.57
68 69 6.071728 GGTCAAGATGGTTTGAATCTGTTCAT 60.072 38.462 0.00 0.00 43.49 2.57
69 70 5.241506 GGTCAAGATGGTTTGAATCTGTTCA 59.758 40.000 0.00 0.00 42.41 3.18
70 71 5.617751 CGGTCAAGATGGTTTGAATCTGTTC 60.618 44.000 0.00 0.00 38.69 3.18
71 72 4.216257 CGGTCAAGATGGTTTGAATCTGTT 59.784 41.667 0.00 0.00 38.69 3.16
72 73 3.753272 CGGTCAAGATGGTTTGAATCTGT 59.247 43.478 0.00 0.00 38.69 3.41
73 74 3.753272 ACGGTCAAGATGGTTTGAATCTG 59.247 43.478 0.00 0.00 38.69 2.90
74 75 4.003648 GACGGTCAAGATGGTTTGAATCT 58.996 43.478 2.62 0.00 38.69 2.40
75 76 3.751175 TGACGGTCAAGATGGTTTGAATC 59.249 43.478 8.68 0.00 38.69 2.52
76 77 3.750371 TGACGGTCAAGATGGTTTGAAT 58.250 40.909 8.68 0.00 38.69 2.57
77 78 3.201353 TGACGGTCAAGATGGTTTGAA 57.799 42.857 8.68 0.00 38.69 2.69
78 79 2.920724 TGACGGTCAAGATGGTTTGA 57.079 45.000 8.68 0.00 34.83 2.69
79 80 3.980646 TTTGACGGTCAAGATGGTTTG 57.019 42.857 21.47 0.00 37.70 2.93
80 81 4.141287 TGATTTGACGGTCAAGATGGTTT 58.859 39.130 21.47 4.56 37.70 3.27
81 82 3.750371 TGATTTGACGGTCAAGATGGTT 58.250 40.909 21.47 6.08 37.70 3.67
82 83 3.417069 TGATTTGACGGTCAAGATGGT 57.583 42.857 21.47 8.59 37.70 3.55
83 84 3.691118 ACATGATTTGACGGTCAAGATGG 59.309 43.478 26.33 18.57 37.70 3.51
84 85 4.952262 ACATGATTTGACGGTCAAGATG 57.048 40.909 21.47 22.91 37.70 2.90
85 86 7.050377 AGATAACATGATTTGACGGTCAAGAT 58.950 34.615 21.47 17.34 37.70 2.40
86 87 6.406370 AGATAACATGATTTGACGGTCAAGA 58.594 36.000 21.47 13.93 37.70 3.02
87 88 6.668541 AGATAACATGATTTGACGGTCAAG 57.331 37.500 21.47 13.21 37.70 3.02
88 89 6.257849 GCTAGATAACATGATTTGACGGTCAA 59.742 38.462 19.07 19.07 34.03 3.18
89 90 5.753438 GCTAGATAACATGATTTGACGGTCA 59.247 40.000 6.76 6.76 0.00 4.02
90 91 5.986135 AGCTAGATAACATGATTTGACGGTC 59.014 40.000 0.00 0.00 0.00 4.79
91 92 5.755375 CAGCTAGATAACATGATTTGACGGT 59.245 40.000 0.00 0.00 0.00 4.83
92 93 5.755375 ACAGCTAGATAACATGATTTGACGG 59.245 40.000 0.00 0.00 0.00 4.79
93 94 6.834959 ACAGCTAGATAACATGATTTGACG 57.165 37.500 0.00 0.00 0.00 4.35
94 95 7.222805 TCGAACAGCTAGATAACATGATTTGAC 59.777 37.037 0.00 0.00 0.00 3.18
95 96 7.264947 TCGAACAGCTAGATAACATGATTTGA 58.735 34.615 0.00 0.00 0.00 2.69
96 97 7.468922 TCGAACAGCTAGATAACATGATTTG 57.531 36.000 0.00 0.00 0.00 2.32
97 98 8.668510 ATTCGAACAGCTAGATAACATGATTT 57.331 30.769 0.00 0.00 0.00 2.17
98 99 7.115520 CGATTCGAACAGCTAGATAACATGATT 59.884 37.037 0.00 0.00 0.00 2.57
99 100 6.584184 CGATTCGAACAGCTAGATAACATGAT 59.416 38.462 0.00 0.00 0.00 2.45
100 101 5.915196 CGATTCGAACAGCTAGATAACATGA 59.085 40.000 0.00 0.00 0.00 3.07
101 102 5.687730 ACGATTCGAACAGCTAGATAACATG 59.312 40.000 13.95 0.00 0.00 3.21
102 103 5.833082 ACGATTCGAACAGCTAGATAACAT 58.167 37.500 13.95 0.00 0.00 2.71
103 104 5.244785 ACGATTCGAACAGCTAGATAACA 57.755 39.130 13.95 0.00 0.00 2.41
104 105 5.173492 GGAACGATTCGAACAGCTAGATAAC 59.827 44.000 13.95 0.00 0.00 1.89
105 106 5.163591 TGGAACGATTCGAACAGCTAGATAA 60.164 40.000 13.95 0.00 0.00 1.75
106 107 4.337274 TGGAACGATTCGAACAGCTAGATA 59.663 41.667 13.95 0.00 0.00 1.98
107 108 3.130516 TGGAACGATTCGAACAGCTAGAT 59.869 43.478 13.95 0.00 0.00 1.98
108 109 2.490509 TGGAACGATTCGAACAGCTAGA 59.509 45.455 13.95 0.00 0.00 2.43
109 110 2.876091 TGGAACGATTCGAACAGCTAG 58.124 47.619 13.95 0.00 0.00 3.42
110 111 3.306917 TTGGAACGATTCGAACAGCTA 57.693 42.857 13.95 0.00 0.00 3.32
111 112 2.163818 TTGGAACGATTCGAACAGCT 57.836 45.000 13.95 0.00 0.00 4.24
112 113 2.159627 ACATTGGAACGATTCGAACAGC 59.840 45.455 13.95 0.00 30.12 4.40
113 114 4.084066 TCAACATTGGAACGATTCGAACAG 60.084 41.667 13.95 0.00 30.12 3.16
114 115 3.810386 TCAACATTGGAACGATTCGAACA 59.190 39.130 13.95 5.60 30.12 3.18
115 116 4.394795 CTCAACATTGGAACGATTCGAAC 58.605 43.478 13.95 5.94 30.12 3.95
116 117 3.120338 GCTCAACATTGGAACGATTCGAA 60.120 43.478 13.95 0.00 0.00 3.71
117 118 2.415168 GCTCAACATTGGAACGATTCGA 59.585 45.455 13.95 0.00 0.00 3.71
118 119 2.159430 TGCTCAACATTGGAACGATTCG 59.841 45.455 4.14 4.14 0.00 3.34
119 120 3.492313 GTGCTCAACATTGGAACGATTC 58.508 45.455 0.00 0.00 0.00 2.52
120 121 2.228822 GGTGCTCAACATTGGAACGATT 59.771 45.455 0.00 0.00 0.00 3.34
121 122 1.812571 GGTGCTCAACATTGGAACGAT 59.187 47.619 0.00 0.00 0.00 3.73
122 123 1.234821 GGTGCTCAACATTGGAACGA 58.765 50.000 0.00 0.00 0.00 3.85
123 124 0.950836 TGGTGCTCAACATTGGAACG 59.049 50.000 0.00 0.00 0.00 3.95
124 125 2.863704 GCTTGGTGCTCAACATTGGAAC 60.864 50.000 0.00 0.00 38.95 3.62
125 126 1.340889 GCTTGGTGCTCAACATTGGAA 59.659 47.619 0.00 0.00 38.95 3.53
126 127 0.961019 GCTTGGTGCTCAACATTGGA 59.039 50.000 0.00 0.00 38.95 3.53
127 128 0.675083 TGCTTGGTGCTCAACATTGG 59.325 50.000 0.00 0.00 43.37 3.16
128 129 1.774639 GTGCTTGGTGCTCAACATTG 58.225 50.000 0.00 0.00 43.37 2.82
129 130 0.311790 CGTGCTTGGTGCTCAACATT 59.688 50.000 0.00 0.00 43.37 2.71
130 131 0.819259 ACGTGCTTGGTGCTCAACAT 60.819 50.000 0.00 0.00 43.37 2.71
131 132 1.029408 AACGTGCTTGGTGCTCAACA 61.029 50.000 0.00 0.00 43.37 3.33
132 133 0.100503 AAACGTGCTTGGTGCTCAAC 59.899 50.000 0.00 0.00 43.37 3.18
133 134 1.669604 TAAACGTGCTTGGTGCTCAA 58.330 45.000 0.00 0.00 43.37 3.02
134 135 1.332375 GTTAAACGTGCTTGGTGCTCA 59.668 47.619 0.00 0.00 43.37 4.26
135 136 1.659211 CGTTAAACGTGCTTGGTGCTC 60.659 52.381 0.00 0.00 36.74 4.26
136 137 0.306533 CGTTAAACGTGCTTGGTGCT 59.693 50.000 0.00 0.00 36.74 4.40
137 138 1.266124 GCGTTAAACGTGCTTGGTGC 61.266 55.000 0.00 0.00 44.73 5.01
138 139 0.306533 AGCGTTAAACGTGCTTGGTG 59.693 50.000 0.00 0.00 44.73 4.17
139 140 0.584876 GAGCGTTAAACGTGCTTGGT 59.415 50.000 0.00 0.00 44.73 3.67
140 141 0.865769 AGAGCGTTAAACGTGCTTGG 59.134 50.000 0.00 0.00 44.73 3.61
141 142 3.781341 TTAGAGCGTTAAACGTGCTTG 57.219 42.857 0.00 0.00 44.73 4.01
142 143 5.163923 GGTAATTAGAGCGTTAAACGTGCTT 60.164 40.000 0.00 0.00 44.73 3.91
143 144 4.328169 GGTAATTAGAGCGTTAAACGTGCT 59.672 41.667 0.00 0.00 44.73 4.40
144 145 4.493057 GGGTAATTAGAGCGTTAAACGTGC 60.493 45.833 0.00 0.00 44.73 5.34
145 146 4.626604 TGGGTAATTAGAGCGTTAAACGTG 59.373 41.667 0.00 0.00 44.73 4.49
146 147 4.819769 TGGGTAATTAGAGCGTTAAACGT 58.180 39.130 0.00 0.00 44.73 3.99
147 148 5.521010 TGATGGGTAATTAGAGCGTTAAACG 59.479 40.000 0.00 0.00 45.88 3.60
148 149 6.537660 AGTGATGGGTAATTAGAGCGTTAAAC 59.462 38.462 0.00 0.00 0.00 2.01
149 150 6.537301 CAGTGATGGGTAATTAGAGCGTTAAA 59.463 38.462 0.00 0.00 0.00 1.52
150 151 6.046593 CAGTGATGGGTAATTAGAGCGTTAA 58.953 40.000 0.00 0.00 0.00 2.01
151 152 5.128171 ACAGTGATGGGTAATTAGAGCGTTA 59.872 40.000 0.00 0.00 0.00 3.18
152 153 4.081087 ACAGTGATGGGTAATTAGAGCGTT 60.081 41.667 0.00 0.00 0.00 4.84
153 154 3.451178 ACAGTGATGGGTAATTAGAGCGT 59.549 43.478 0.00 0.00 0.00 5.07
154 155 4.051922 GACAGTGATGGGTAATTAGAGCG 58.948 47.826 0.00 0.00 0.00 5.03
155 156 5.023533 TGACAGTGATGGGTAATTAGAGC 57.976 43.478 0.00 0.00 0.00 4.09
156 157 6.484643 CCAATGACAGTGATGGGTAATTAGAG 59.515 42.308 4.07 0.00 0.00 2.43
157 158 6.069673 ACCAATGACAGTGATGGGTAATTAGA 60.070 38.462 4.07 0.00 37.26 2.10
158 159 6.122277 ACCAATGACAGTGATGGGTAATTAG 58.878 40.000 4.07 0.00 37.26 1.73
159 160 6.073447 ACCAATGACAGTGATGGGTAATTA 57.927 37.500 4.07 0.00 37.26 1.40
160 161 4.934356 ACCAATGACAGTGATGGGTAATT 58.066 39.130 4.07 0.00 37.26 1.40
161 162 4.591321 ACCAATGACAGTGATGGGTAAT 57.409 40.909 4.07 0.00 37.26 1.89
162 163 4.380843 AACCAATGACAGTGATGGGTAA 57.619 40.909 4.07 0.00 37.26 2.85
163 164 5.708736 ATAACCAATGACAGTGATGGGTA 57.291 39.130 4.07 3.28 39.33 3.69
164 165 2.978156 AACCAATGACAGTGATGGGT 57.022 45.000 4.07 0.00 37.26 4.51
165 166 6.376864 TGTTTATAACCAATGACAGTGATGGG 59.623 38.462 4.07 0.00 37.26 4.00
166 167 7.250569 GTGTTTATAACCAATGACAGTGATGG 58.749 38.462 4.07 2.32 38.91 3.51
167 168 6.960992 CGTGTTTATAACCAATGACAGTGATG 59.039 38.462 4.07 0.00 0.00 3.07
168 169 6.653320 ACGTGTTTATAACCAATGACAGTGAT 59.347 34.615 4.07 0.00 0.00 3.06
169 170 5.992829 ACGTGTTTATAACCAATGACAGTGA 59.007 36.000 4.07 0.00 0.00 3.41
170 171 6.236017 ACGTGTTTATAACCAATGACAGTG 57.764 37.500 0.00 0.00 0.00 3.66
171 172 6.870971 AACGTGTTTATAACCAATGACAGT 57.129 33.333 0.00 0.00 0.00 3.55
172 173 7.858382 TCAAAACGTGTTTATAACCAATGACAG 59.142 33.333 0.00 0.00 31.63 3.51
173 174 7.644551 GTCAAAACGTGTTTATAACCAATGACA 59.355 33.333 13.55 0.00 31.63 3.58
174 175 7.858879 AGTCAAAACGTGTTTATAACCAATGAC 59.141 33.333 11.72 11.72 31.63 3.06
175 176 7.932335 AGTCAAAACGTGTTTATAACCAATGA 58.068 30.769 0.00 0.00 31.63 2.57
176 177 7.858382 TGAGTCAAAACGTGTTTATAACCAATG 59.142 33.333 0.00 0.00 31.63 2.82
177 178 7.932335 TGAGTCAAAACGTGTTTATAACCAAT 58.068 30.769 0.00 0.00 31.63 3.16
178 179 7.317842 TGAGTCAAAACGTGTTTATAACCAA 57.682 32.000 0.00 0.00 31.63 3.67
179 180 6.922247 TGAGTCAAAACGTGTTTATAACCA 57.078 33.333 0.00 0.00 31.63 3.67
180 181 7.164662 GTGTTGAGTCAAAACGTGTTTATAACC 59.835 37.037 10.41 0.00 31.63 2.85
181 182 7.906527 AGTGTTGAGTCAAAACGTGTTTATAAC 59.093 33.333 18.44 0.00 36.75 1.89
182 183 7.976826 AGTGTTGAGTCAAAACGTGTTTATAA 58.023 30.769 18.44 0.00 36.75 0.98
183 184 7.542534 AGTGTTGAGTCAAAACGTGTTTATA 57.457 32.000 18.44 0.00 36.75 0.98
184 185 6.431198 AGTGTTGAGTCAAAACGTGTTTAT 57.569 33.333 18.44 0.00 36.75 1.40
185 186 5.866335 AGTGTTGAGTCAAAACGTGTTTA 57.134 34.783 18.44 0.00 36.75 2.01
186 187 4.759516 AGTGTTGAGTCAAAACGTGTTT 57.240 36.364 18.44 0.30 36.75 2.83
187 188 5.007332 GGATAGTGTTGAGTCAAAACGTGTT 59.993 40.000 18.44 5.84 36.75 3.32
188 189 4.510340 GGATAGTGTTGAGTCAAAACGTGT 59.490 41.667 18.44 9.86 36.75 4.49
189 190 4.084013 GGGATAGTGTTGAGTCAAAACGTG 60.084 45.833 18.44 0.00 36.75 4.49
190 191 4.062991 GGGATAGTGTTGAGTCAAAACGT 58.937 43.478 18.44 12.39 36.75 3.99
191 192 4.315803 AGGGATAGTGTTGAGTCAAAACG 58.684 43.478 18.44 0.00 36.75 3.60
192 193 5.763204 TCAAGGGATAGTGTTGAGTCAAAAC 59.237 40.000 17.14 17.14 32.20 2.43
193 194 5.935945 TCAAGGGATAGTGTTGAGTCAAAA 58.064 37.500 7.25 0.00 0.00 2.44
194 195 5.560722 TCAAGGGATAGTGTTGAGTCAAA 57.439 39.130 7.25 0.00 0.00 2.69
195 196 5.560722 TTCAAGGGATAGTGTTGAGTCAA 57.439 39.130 0.08 0.08 32.00 3.18
196 197 5.560722 TTTCAAGGGATAGTGTTGAGTCA 57.439 39.130 0.00 0.00 32.00 3.41
197 198 7.308435 CAAATTTCAAGGGATAGTGTTGAGTC 58.692 38.462 0.00 0.00 32.00 3.36
198 199 6.294731 GCAAATTTCAAGGGATAGTGTTGAGT 60.295 38.462 0.00 0.00 32.00 3.41
199 200 6.095377 GCAAATTTCAAGGGATAGTGTTGAG 58.905 40.000 0.00 0.00 32.00 3.02
200 201 5.047377 GGCAAATTTCAAGGGATAGTGTTGA 60.047 40.000 0.00 0.00 0.00 3.18
201 202 5.170748 GGCAAATTTCAAGGGATAGTGTTG 58.829 41.667 0.00 0.00 0.00 3.33
202 203 4.837860 TGGCAAATTTCAAGGGATAGTGTT 59.162 37.500 0.00 0.00 0.00 3.32
203 204 4.415596 TGGCAAATTTCAAGGGATAGTGT 58.584 39.130 0.00 0.00 0.00 3.55
204 205 5.603170 ATGGCAAATTTCAAGGGATAGTG 57.397 39.130 0.00 0.00 0.00 2.74
205 206 9.605951 ATTATATGGCAAATTTCAAGGGATAGT 57.394 29.630 0.00 0.00 0.00 2.12
233 234 9.614792 ACTTTTTCGCAGGAATAGTAAGATATT 57.385 29.630 0.00 0.00 30.28 1.28
234 235 9.046296 CACTTTTTCGCAGGAATAGTAAGATAT 57.954 33.333 0.00 0.00 30.66 1.63
235 236 8.255206 TCACTTTTTCGCAGGAATAGTAAGATA 58.745 33.333 0.00 0.00 30.66 1.98
236 237 7.103641 TCACTTTTTCGCAGGAATAGTAAGAT 58.896 34.615 0.00 0.00 30.66 2.40
237 238 6.460781 TCACTTTTTCGCAGGAATAGTAAGA 58.539 36.000 0.00 0.00 30.66 2.10
238 239 6.721571 TCACTTTTTCGCAGGAATAGTAAG 57.278 37.500 0.00 0.00 30.66 2.34
239 240 7.389330 TCAATCACTTTTTCGCAGGAATAGTAA 59.611 33.333 0.00 0.00 30.66 2.24
240 241 6.876789 TCAATCACTTTTTCGCAGGAATAGTA 59.123 34.615 0.00 0.00 30.66 1.82
241 242 5.705441 TCAATCACTTTTTCGCAGGAATAGT 59.295 36.000 0.00 0.00 31.42 2.12
242 243 6.182039 TCAATCACTTTTTCGCAGGAATAG 57.818 37.500 0.00 0.00 30.88 1.73
243 244 6.757897 ATCAATCACTTTTTCGCAGGAATA 57.242 33.333 0.00 0.00 30.88 1.75
244 245 5.649782 ATCAATCACTTTTTCGCAGGAAT 57.350 34.783 0.00 0.00 30.88 3.01
245 246 6.599244 AGATATCAATCACTTTTTCGCAGGAA 59.401 34.615 5.32 0.00 34.28 3.36
246 247 6.115446 AGATATCAATCACTTTTTCGCAGGA 58.885 36.000 5.32 0.00 34.28 3.86
247 248 6.369059 AGATATCAATCACTTTTTCGCAGG 57.631 37.500 5.32 0.00 34.28 4.85
248 249 7.852945 GGTAAGATATCAATCACTTTTTCGCAG 59.147 37.037 5.32 0.00 34.28 5.18
249 250 7.335673 TGGTAAGATATCAATCACTTTTTCGCA 59.664 33.333 5.32 0.00 34.28 5.10
250 251 7.693952 TGGTAAGATATCAATCACTTTTTCGC 58.306 34.615 5.32 0.00 34.28 4.70
256 257 9.851686 TGCTATTTGGTAAGATATCAATCACTT 57.148 29.630 5.32 0.00 34.28 3.16
257 258 9.851686 TTGCTATTTGGTAAGATATCAATCACT 57.148 29.630 5.32 0.00 34.28 3.41
258 259 9.884465 GTTGCTATTTGGTAAGATATCAATCAC 57.116 33.333 5.32 0.00 34.28 3.06
259 260 9.625747 TGTTGCTATTTGGTAAGATATCAATCA 57.374 29.630 5.32 0.00 34.28 2.57
262 263 8.352201 GCATGTTGCTATTTGGTAAGATATCAA 58.648 33.333 5.32 0.00 40.96 2.57
263 264 7.501892 TGCATGTTGCTATTTGGTAAGATATCA 59.498 33.333 5.32 0.00 45.31 2.15
264 265 7.874940 TGCATGTTGCTATTTGGTAAGATATC 58.125 34.615 0.00 0.00 45.31 1.63
265 266 7.822161 TGCATGTTGCTATTTGGTAAGATAT 57.178 32.000 0.75 0.00 45.31 1.63
266 267 7.637631 TTGCATGTTGCTATTTGGTAAGATA 57.362 32.000 0.75 0.00 45.31 1.98
267 268 6.528537 TTGCATGTTGCTATTTGGTAAGAT 57.471 33.333 0.75 0.00 45.31 2.40
268 269 5.973899 TTGCATGTTGCTATTTGGTAAGA 57.026 34.783 0.75 0.00 45.31 2.10
269 270 7.706159 TCTATTGCATGTTGCTATTTGGTAAG 58.294 34.615 2.01 0.00 45.31 2.34
270 271 7.637631 TCTATTGCATGTTGCTATTTGGTAA 57.362 32.000 2.01 0.00 45.31 2.85
271 272 7.822161 ATCTATTGCATGTTGCTATTTGGTA 57.178 32.000 2.01 0.00 45.31 3.25
272 273 6.720112 ATCTATTGCATGTTGCTATTTGGT 57.280 33.333 2.01 0.00 45.31 3.67
279 280 9.388506 GGTAAGATATATCTATTGCATGTTGCT 57.611 33.333 15.64 0.00 39.28 3.91
280 281 9.388506 AGGTAAGATATATCTATTGCATGTTGC 57.611 33.333 15.64 0.90 39.10 4.17
296 297 9.649167 GGTTGCACGTTATATTAGGTAAGATAT 57.351 33.333 0.00 0.00 0.00 1.63
297 298 8.640651 TGGTTGCACGTTATATTAGGTAAGATA 58.359 33.333 0.00 0.00 0.00 1.98
298 299 7.502696 TGGTTGCACGTTATATTAGGTAAGAT 58.497 34.615 0.00 0.00 0.00 2.40
299 300 6.876155 TGGTTGCACGTTATATTAGGTAAGA 58.124 36.000 0.00 0.00 0.00 2.10
300 301 7.064847 TGTTGGTTGCACGTTATATTAGGTAAG 59.935 37.037 0.00 0.00 0.00 2.34
301 302 6.877855 TGTTGGTTGCACGTTATATTAGGTAA 59.122 34.615 0.00 0.00 0.00 2.85
302 303 6.404708 TGTTGGTTGCACGTTATATTAGGTA 58.595 36.000 0.00 0.00 0.00 3.08
303 304 5.247084 TGTTGGTTGCACGTTATATTAGGT 58.753 37.500 0.00 0.00 0.00 3.08
304 305 5.804692 TGTTGGTTGCACGTTATATTAGG 57.195 39.130 0.00 0.00 0.00 2.69
305 306 6.260050 AGGATGTTGGTTGCACGTTATATTAG 59.740 38.462 0.00 0.00 0.00 1.73
306 307 6.116806 AGGATGTTGGTTGCACGTTATATTA 58.883 36.000 0.00 0.00 0.00 0.98
307 308 4.947388 AGGATGTTGGTTGCACGTTATATT 59.053 37.500 0.00 0.00 0.00 1.28
308 309 4.523083 AGGATGTTGGTTGCACGTTATAT 58.477 39.130 0.00 0.00 0.00 0.86
309 310 3.945346 AGGATGTTGGTTGCACGTTATA 58.055 40.909 0.00 0.00 0.00 0.98
310 311 2.790433 AGGATGTTGGTTGCACGTTAT 58.210 42.857 0.00 0.00 0.00 1.89
311 312 2.264005 AGGATGTTGGTTGCACGTTA 57.736 45.000 0.00 0.00 0.00 3.18
312 313 1.877443 GTAGGATGTTGGTTGCACGTT 59.123 47.619 0.00 0.00 0.00 3.99
313 314 1.519408 GTAGGATGTTGGTTGCACGT 58.481 50.000 0.00 0.00 0.00 4.49
314 315 0.802494 GGTAGGATGTTGGTTGCACG 59.198 55.000 0.00 0.00 0.00 5.34
315 316 2.200373 AGGTAGGATGTTGGTTGCAC 57.800 50.000 0.00 0.00 0.00 4.57
316 317 4.584638 ATTAGGTAGGATGTTGGTTGCA 57.415 40.909 0.00 0.00 0.00 4.08
317 318 8.565416 GTTTATATTAGGTAGGATGTTGGTTGC 58.435 37.037 0.00 0.00 0.00 4.17
318 319 8.770828 CGTTTATATTAGGTAGGATGTTGGTTG 58.229 37.037 0.00 0.00 0.00 3.77
319 320 8.488668 ACGTTTATATTAGGTAGGATGTTGGTT 58.511 33.333 0.00 0.00 0.00 3.67
320 321 7.929785 CACGTTTATATTAGGTAGGATGTTGGT 59.070 37.037 0.00 0.00 0.00 3.67
321 322 7.095355 GCACGTTTATATTAGGTAGGATGTTGG 60.095 40.741 0.00 0.00 0.00 3.77
322 323 7.439955 TGCACGTTTATATTAGGTAGGATGTTG 59.560 37.037 0.00 0.00 0.00 3.33
323 324 7.502696 TGCACGTTTATATTAGGTAGGATGTT 58.497 34.615 0.00 0.00 0.00 2.71
324 325 7.058023 TGCACGTTTATATTAGGTAGGATGT 57.942 36.000 0.00 0.00 0.00 3.06
325 326 8.443160 CAATGCACGTTTATATTAGGTAGGATG 58.557 37.037 0.00 0.00 0.00 3.51
326 327 7.119262 GCAATGCACGTTTATATTAGGTAGGAT 59.881 37.037 0.00 0.00 0.00 3.24
327 328 6.425721 GCAATGCACGTTTATATTAGGTAGGA 59.574 38.462 0.00 0.00 0.00 2.94
328 329 6.203915 TGCAATGCACGTTTATATTAGGTAGG 59.796 38.462 2.72 0.00 31.71 3.18
329 330 7.184800 TGCAATGCACGTTTATATTAGGTAG 57.815 36.000 2.72 0.00 31.71 3.18
345 346 6.759356 ACTAGTAATAATGTACGTGCAATGCA 59.241 34.615 11.22 2.72 35.60 3.96
346 347 7.169308 AGACTAGTAATAATGTACGTGCAATGC 59.831 37.037 11.22 0.00 0.00 3.56
347 348 8.575565 AGACTAGTAATAATGTACGTGCAATG 57.424 34.615 11.22 0.00 0.00 2.82
349 350 9.507280 GTTAGACTAGTAATAATGTACGTGCAA 57.493 33.333 11.22 0.00 0.00 4.08
350 351 8.896744 AGTTAGACTAGTAATAATGTACGTGCA 58.103 33.333 9.28 9.28 0.00 4.57
362 363 9.471702 TGTAGTGCCTTTAGTTAGACTAGTAAT 57.528 33.333 0.00 0.00 31.47 1.89
363 364 8.868522 TGTAGTGCCTTTAGTTAGACTAGTAA 57.131 34.615 0.00 0.00 31.47 2.24
364 365 8.900781 CATGTAGTGCCTTTAGTTAGACTAGTA 58.099 37.037 0.00 0.00 31.47 1.82
365 366 7.773149 CATGTAGTGCCTTTAGTTAGACTAGT 58.227 38.462 0.00 0.00 31.47 2.57
382 383 5.583854 GGGAGCATTAGATATGCATGTAGTG 59.416 44.000 10.16 6.58 46.77 2.74
383 384 5.486775 AGGGAGCATTAGATATGCATGTAGT 59.513 40.000 10.16 0.00 46.77 2.73
384 385 5.987098 AGGGAGCATTAGATATGCATGTAG 58.013 41.667 10.16 0.00 46.77 2.74
385 386 5.394553 CGAGGGAGCATTAGATATGCATGTA 60.395 44.000 10.16 0.00 46.77 2.29
386 387 4.622457 CGAGGGAGCATTAGATATGCATGT 60.622 45.833 10.16 1.23 46.77 3.21
387 388 3.869832 CGAGGGAGCATTAGATATGCATG 59.130 47.826 10.16 0.00 46.77 4.06
388 389 3.118482 CCGAGGGAGCATTAGATATGCAT 60.118 47.826 3.79 3.79 46.77 3.96
389 390 2.234661 CCGAGGGAGCATTAGATATGCA 59.765 50.000 11.81 0.00 46.77 3.96
390 391 2.497675 TCCGAGGGAGCATTAGATATGC 59.502 50.000 1.61 1.61 44.85 3.14
391 392 3.428180 CGTCCGAGGGAGCATTAGATATG 60.428 52.174 0.00 0.00 29.39 1.78
392 393 2.755655 CGTCCGAGGGAGCATTAGATAT 59.244 50.000 0.00 0.00 29.39 1.63
393 394 2.160205 CGTCCGAGGGAGCATTAGATA 58.840 52.381 0.00 0.00 29.39 1.98
394 395 0.962489 CGTCCGAGGGAGCATTAGAT 59.038 55.000 0.00 0.00 29.39 1.98
395 396 1.735376 GCGTCCGAGGGAGCATTAGA 61.735 60.000 5.23 0.00 29.39 2.10
396 397 1.300233 GCGTCCGAGGGAGCATTAG 60.300 63.158 5.23 0.00 29.39 1.73
397 398 2.792947 GGCGTCCGAGGGAGCATTA 61.793 63.158 10.66 0.00 31.05 1.90
398 399 4.162690 GGCGTCCGAGGGAGCATT 62.163 66.667 10.66 0.00 31.05 3.56
405 406 3.546714 AAAACCTGGGCGTCCGAGG 62.547 63.158 19.20 19.20 37.36 4.63
406 407 2.032071 AAAACCTGGGCGTCCGAG 59.968 61.111 0.00 0.00 35.24 4.63
407 408 2.031465 GAAAACCTGGGCGTCCGA 59.969 61.111 0.00 0.00 35.24 4.55
408 409 3.419759 CGAAAACCTGGGCGTCCG 61.420 66.667 0.00 0.00 35.24 4.79
409 410 2.453379 TACCGAAAACCTGGGCGTCC 62.453 60.000 0.00 0.00 0.00 4.79
410 411 0.603439 TTACCGAAAACCTGGGCGTC 60.603 55.000 0.00 0.00 0.00 5.19
411 412 0.037160 ATTACCGAAAACCTGGGCGT 59.963 50.000 0.00 0.00 0.00 5.68
412 413 1.170442 AATTACCGAAAACCTGGGCG 58.830 50.000 0.00 0.00 0.00 6.13
413 414 3.083293 TGTAATTACCGAAAACCTGGGC 58.917 45.455 13.01 0.00 0.00 5.36
414 415 4.380128 GCTTGTAATTACCGAAAACCTGGG 60.380 45.833 13.01 0.00 0.00 4.45
415 416 4.216687 TGCTTGTAATTACCGAAAACCTGG 59.783 41.667 13.01 0.00 0.00 4.45
416 417 5.048991 AGTGCTTGTAATTACCGAAAACCTG 60.049 40.000 13.01 0.00 0.00 4.00
417 418 5.067954 AGTGCTTGTAATTACCGAAAACCT 58.932 37.500 13.01 0.00 0.00 3.50
418 419 5.180680 AGAGTGCTTGTAATTACCGAAAACC 59.819 40.000 13.01 0.00 0.00 3.27
419 420 6.237313 AGAGTGCTTGTAATTACCGAAAAC 57.763 37.500 13.01 5.52 0.00 2.43
420 421 6.870971 AAGAGTGCTTGTAATTACCGAAAA 57.129 33.333 13.01 0.01 31.83 2.29
421 422 7.380536 TCTAAGAGTGCTTGTAATTACCGAAA 58.619 34.615 13.01 0.36 35.56 3.46
422 423 6.927416 TCTAAGAGTGCTTGTAATTACCGAA 58.073 36.000 13.01 1.05 35.56 4.30
423 424 6.519679 TCTAAGAGTGCTTGTAATTACCGA 57.480 37.500 13.01 1.32 35.56 4.69
424 425 7.412672 GGTTTCTAAGAGTGCTTGTAATTACCG 60.413 40.741 13.01 5.53 35.56 4.02
425 426 7.389607 TGGTTTCTAAGAGTGCTTGTAATTACC 59.610 37.037 13.01 0.00 35.56 2.85
426 427 8.319143 TGGTTTCTAAGAGTGCTTGTAATTAC 57.681 34.615 8.75 8.75 35.56 1.89
427 428 8.154856 ACTGGTTTCTAAGAGTGCTTGTAATTA 58.845 33.333 0.00 0.00 35.56 1.40
428 429 6.998673 ACTGGTTTCTAAGAGTGCTTGTAATT 59.001 34.615 0.00 0.00 35.56 1.40
429 430 6.534634 ACTGGTTTCTAAGAGTGCTTGTAAT 58.465 36.000 0.00 0.00 35.56 1.89
430 431 5.925509 ACTGGTTTCTAAGAGTGCTTGTAA 58.074 37.500 0.00 0.00 35.56 2.41
431 432 5.546621 ACTGGTTTCTAAGAGTGCTTGTA 57.453 39.130 0.00 0.00 35.56 2.41
432 433 4.423625 ACTGGTTTCTAAGAGTGCTTGT 57.576 40.909 0.00 0.00 35.56 3.16
433 434 5.757850 AAACTGGTTTCTAAGAGTGCTTG 57.242 39.130 0.00 0.00 35.56 4.01
434 435 6.592870 AGTAAACTGGTTTCTAAGAGTGCTT 58.407 36.000 1.77 0.00 34.87 3.91
435 436 6.176014 AGTAAACTGGTTTCTAAGAGTGCT 57.824 37.500 1.77 0.00 34.23 4.40
436 437 6.482308 TCAAGTAAACTGGTTTCTAAGAGTGC 59.518 38.462 1.77 0.00 34.23 4.40
437 438 8.608844 ATCAAGTAAACTGGTTTCTAAGAGTG 57.391 34.615 1.77 0.00 34.23 3.51
438 439 9.628500 AAATCAAGTAAACTGGTTTCTAAGAGT 57.372 29.630 1.77 0.00 34.23 3.24
439 440 9.884465 CAAATCAAGTAAACTGGTTTCTAAGAG 57.116 33.333 1.77 0.00 34.23 2.85
440 441 8.846211 CCAAATCAAGTAAACTGGTTTCTAAGA 58.154 33.333 1.77 0.00 34.23 2.10
441 442 7.595130 GCCAAATCAAGTAAACTGGTTTCTAAG 59.405 37.037 1.77 0.00 34.23 2.18
442 443 7.430441 GCCAAATCAAGTAAACTGGTTTCTAA 58.570 34.615 1.77 0.00 34.23 2.10
443 444 6.293735 CGCCAAATCAAGTAAACTGGTTTCTA 60.294 38.462 1.77 0.00 34.23 2.10
444 445 5.507315 CGCCAAATCAAGTAAACTGGTTTCT 60.507 40.000 1.77 0.00 34.23 2.52
445 446 4.679654 CGCCAAATCAAGTAAACTGGTTTC 59.320 41.667 1.77 0.00 34.23 2.78
446 447 4.098807 ACGCCAAATCAAGTAAACTGGTTT 59.901 37.500 4.15 4.15 36.63 3.27
447 448 3.634910 ACGCCAAATCAAGTAAACTGGTT 59.365 39.130 0.00 0.00 0.00 3.67
448 449 3.004315 CACGCCAAATCAAGTAAACTGGT 59.996 43.478 0.00 0.00 0.00 4.00
449 450 3.564511 CACGCCAAATCAAGTAAACTGG 58.435 45.455 0.00 0.00 0.00 4.00
450 451 3.252215 TCCACGCCAAATCAAGTAAACTG 59.748 43.478 0.00 0.00 0.00 3.16
464 465 1.040893 ATATCAGGTCGTCCACGCCA 61.041 55.000 12.88 0.00 37.78 5.69
465 466 0.597637 CATATCAGGTCGTCCACGCC 60.598 60.000 0.51 0.00 39.60 5.68
468 469 4.110482 GTGTTACATATCAGGTCGTCCAC 58.890 47.826 0.51 0.00 35.89 4.02
473 474 3.550233 CGAGGGTGTTACATATCAGGTCG 60.550 52.174 0.00 0.00 0.00 4.79
493 494 4.103103 CGTCCTCGAGCAGCACGA 62.103 66.667 14.49 14.49 39.71 4.35
494 495 3.610791 TTCGTCCTCGAGCAGCACG 62.611 63.158 6.99 11.93 46.81 5.34
495 496 1.803519 CTTCGTCCTCGAGCAGCAC 60.804 63.158 6.99 0.00 46.81 4.40
496 497 2.568612 CTTCGTCCTCGAGCAGCA 59.431 61.111 6.99 0.00 46.81 4.41
497 498 2.202676 CCTTCGTCCTCGAGCAGC 60.203 66.667 6.99 0.00 46.81 5.25
498 499 2.202676 GCCTTCGTCCTCGAGCAG 60.203 66.667 6.99 0.00 46.81 4.24
499 500 2.676822 AGCCTTCGTCCTCGAGCA 60.677 61.111 6.99 0.00 46.81 4.26
500 501 2.103340 GAGCCTTCGTCCTCGAGC 59.897 66.667 6.99 0.00 46.81 5.03
501 502 1.431440 CAGAGCCTTCGTCCTCGAG 59.569 63.158 5.13 5.13 46.81 4.04
502 503 2.701780 GCAGAGCCTTCGTCCTCGA 61.702 63.158 0.00 0.00 44.66 4.04
503 504 2.202676 GCAGAGCCTTCGTCCTCG 60.203 66.667 0.00 0.00 38.55 4.63
504 505 2.202676 CGCAGAGCCTTCGTCCTC 60.203 66.667 0.00 0.00 0.00 3.71
505 506 3.764466 CCGCAGAGCCTTCGTCCT 61.764 66.667 0.00 0.00 0.00 3.85
506 507 3.760035 TCCGCAGAGCCTTCGTCC 61.760 66.667 0.00 0.00 0.00 4.79
507 508 2.507324 GTCCGCAGAGCCTTCGTC 60.507 66.667 0.00 0.00 0.00 4.20
508 509 2.992114 AGTCCGCAGAGCCTTCGT 60.992 61.111 0.00 0.00 0.00 3.85
509 510 2.202676 GAGTCCGCAGAGCCTTCG 60.203 66.667 0.00 0.00 0.00 3.79
510 511 0.529555 GATGAGTCCGCAGAGCCTTC 60.530 60.000 0.00 0.00 0.00 3.46
511 512 1.519719 GATGAGTCCGCAGAGCCTT 59.480 57.895 0.00 0.00 0.00 4.35
512 513 2.780094 CGATGAGTCCGCAGAGCCT 61.780 63.158 0.00 0.00 0.00 4.58
513 514 2.279120 CGATGAGTCCGCAGAGCC 60.279 66.667 0.00 0.00 0.00 4.70
514 515 1.587613 GACGATGAGTCCGCAGAGC 60.588 63.158 0.00 0.00 43.95 4.09
515 516 1.297967 CGACGATGAGTCCGCAGAG 60.298 63.158 0.00 0.00 46.92 3.35
516 517 1.743995 TCGACGATGAGTCCGCAGA 60.744 57.895 0.00 0.00 46.92 4.26
517 518 1.583967 GTCGACGATGAGTCCGCAG 60.584 63.158 0.00 0.00 46.92 5.18
518 519 2.483745 GTCGACGATGAGTCCGCA 59.516 61.111 0.00 0.00 46.92 5.69
519 520 2.648102 CGTCGACGATGAGTCCGC 60.648 66.667 33.35 0.00 46.92 5.54
520 521 2.022902 CCGTCGACGATGAGTCCG 59.977 66.667 37.65 15.45 46.92 4.79
521 522 2.278013 GCCGTCGACGATGAGTCC 60.278 66.667 37.65 13.11 46.92 3.85
522 523 2.648102 CGCCGTCGACGATGAGTC 60.648 66.667 37.65 17.28 46.16 3.36
523 524 4.175489 CCGCCGTCGACGATGAGT 62.175 66.667 37.65 0.00 43.02 3.41
539 540 2.596631 ATGCATCTCGCCATGGCC 60.597 61.111 30.79 15.91 41.33 5.36
540 541 2.952245 GATGCATCTCGCCATGGC 59.048 61.111 27.67 27.67 41.33 4.40
541 542 1.301165 TCGATGCATCTCGCCATGG 60.301 57.895 23.73 7.63 41.33 3.66
542 543 1.563435 GGTCGATGCATCTCGCCATG 61.563 60.000 23.73 7.11 41.33 3.66
543 544 1.301244 GGTCGATGCATCTCGCCAT 60.301 57.895 23.73 0.00 41.33 4.40
544 545 2.106938 GGTCGATGCATCTCGCCA 59.893 61.111 23.73 0.51 41.33 5.69
545 546 1.953138 CAGGTCGATGCATCTCGCC 60.953 63.158 23.73 20.31 41.33 5.54
546 547 2.593134 GCAGGTCGATGCATCTCGC 61.593 63.158 23.73 14.31 45.77 5.03
547 548 3.622756 GCAGGTCGATGCATCTCG 58.377 61.111 23.73 14.05 45.77 4.04
553 554 2.887568 CACGGAGCAGGTCGATGC 60.888 66.667 2.71 2.71 46.88 3.91
554 555 2.887568 GCACGGAGCAGGTCGATG 60.888 66.667 0.00 0.00 44.79 3.84
573 574 1.878522 CGCCGTTAGCTAGTGCAGG 60.879 63.158 10.56 5.29 42.74 4.85
585 586 1.731969 GTACGTGAAGCTCGCCGTT 60.732 57.895 9.35 0.00 0.00 4.44
588 589 0.450983 AGTAGTACGTGAAGCTCGCC 59.549 55.000 0.00 0.00 0.00 5.54
631 663 9.702494 GTGTTAGTTAAAGGTCACACTAATAGT 57.298 33.333 0.00 0.00 34.92 2.12
675 2153 8.946797 TCCTTAAAACTCCTAGTAGTAGTGTT 57.053 34.615 3.97 3.97 0.00 3.32
693 2171 6.057321 ACAGATCGGGTAAACATCCTTAAA 57.943 37.500 0.00 0.00 0.00 1.52
694 2172 5.687166 ACAGATCGGGTAAACATCCTTAA 57.313 39.130 0.00 0.00 0.00 1.85
695 2173 5.687166 AACAGATCGGGTAAACATCCTTA 57.313 39.130 0.00 0.00 0.00 2.69
697 2175 4.225267 AGAAACAGATCGGGTAAACATCCT 59.775 41.667 0.00 0.00 0.00 3.24
698 2176 4.514401 AGAAACAGATCGGGTAAACATCC 58.486 43.478 0.00 0.00 0.00 3.51
699 2177 5.231568 CGTAGAAACAGATCGGGTAAACATC 59.768 44.000 0.00 0.00 0.00 3.06
700 2178 5.107133 CGTAGAAACAGATCGGGTAAACAT 58.893 41.667 0.00 0.00 0.00 2.71
717 2203 9.668497 TCTTGAGATATATAGCTAAGCGTAGAA 57.332 33.333 11.12 0.00 0.00 2.10
754 2245 1.140407 CGTGCAAGAGTACTAGCCGC 61.140 60.000 10.76 5.75 0.00 6.53
758 2249 4.155462 TCTTGTACCGTGCAAGAGTACTAG 59.845 45.833 23.40 22.30 44.90 2.57
777 2268 2.546321 GTGCGCGTGTCTGTCTTG 59.454 61.111 8.43 0.00 0.00 3.02
789 2280 2.580867 CTCTCTACTGGCGTGCGC 60.581 66.667 8.17 8.17 41.06 6.09
795 2286 1.677637 CCGGTTCCCTCTCTACTGGC 61.678 65.000 0.00 0.00 32.00 4.85
796 2287 1.677637 GCCGGTTCCCTCTCTACTGG 61.678 65.000 1.90 0.00 40.56 4.00
797 2288 1.677637 GGCCGGTTCCCTCTCTACTG 61.678 65.000 1.90 0.00 0.00 2.74
798 2289 1.381463 GGCCGGTTCCCTCTCTACT 60.381 63.158 1.90 0.00 0.00 2.57
799 2290 2.783288 CGGCCGGTTCCCTCTCTAC 61.783 68.421 20.10 0.00 0.00 2.59
800 2291 2.441532 CGGCCGGTTCCCTCTCTA 60.442 66.667 20.10 0.00 0.00 2.43
825 2316 3.663464 AATGATTCAGCGTTGTGATCG 57.337 42.857 0.00 0.00 0.00 3.69
848 2340 1.604278 GATTAATTCCTGGCCGACTGC 59.396 52.381 0.00 0.00 40.16 4.40
858 2350 5.104527 TGTCCACATCCGAAGATTAATTCCT 60.105 40.000 0.00 0.00 0.00 3.36
888 2380 3.041940 GCACCTCAACGTGGGTCG 61.042 66.667 5.33 3.93 46.00 4.79
889 2381 1.961277 CAGCACCTCAACGTGGGTC 60.961 63.158 5.33 2.52 34.16 4.46
890 2382 2.111043 CAGCACCTCAACGTGGGT 59.889 61.111 0.00 0.00 34.16 4.51
891 2383 3.357079 GCAGCACCTCAACGTGGG 61.357 66.667 0.00 0.00 34.16 4.61
892 2384 3.357079 GGCAGCACCTCAACGTGG 61.357 66.667 0.00 0.00 34.16 4.94
893 2385 1.915614 GATGGCAGCACCTCAACGTG 61.916 60.000 0.00 0.00 40.22 4.49
894 2386 1.672356 GATGGCAGCACCTCAACGT 60.672 57.895 0.00 0.00 40.22 3.99
895 2387 1.364626 GAGATGGCAGCACCTCAACG 61.365 60.000 5.19 0.00 40.22 4.10
950 2442 3.059884 CTCAACTAGCTGCTTGACGAAA 58.940 45.455 17.66 0.00 0.00 3.46
1212 2718 4.459685 AGATATATAGATATCACGGCCGGC 59.540 45.833 31.76 21.18 44.51 6.13
1380 2916 6.006449 ACCATAGTGGATCCATCTTATTTGC 58.994 40.000 19.62 0.93 40.96 3.68
1387 2923 2.630098 CGTCACCATAGTGGATCCATCT 59.370 50.000 19.62 18.24 44.64 2.90
1390 2926 1.119684 CCGTCACCATAGTGGATCCA 58.880 55.000 11.44 11.44 44.64 3.41
1392 2928 0.249911 GCCCGTCACCATAGTGGATC 60.250 60.000 2.45 0.00 44.64 3.36
1401 2938 2.364632 CATCTTATTTGCCCGTCACCA 58.635 47.619 0.00 0.00 0.00 4.17
1488 3035 5.163723 CCAGTGAATTGAAACATACGATGCT 60.164 40.000 0.00 0.00 0.00 3.79
1489 3036 5.030295 CCAGTGAATTGAAACATACGATGC 58.970 41.667 0.00 0.00 0.00 3.91
1490 3037 6.092670 AGACCAGTGAATTGAAACATACGATG 59.907 38.462 0.00 0.00 0.00 3.84
1491 3038 6.092670 CAGACCAGTGAATTGAAACATACGAT 59.907 38.462 0.00 0.00 0.00 3.73
1492 3039 5.408299 CAGACCAGTGAATTGAAACATACGA 59.592 40.000 0.00 0.00 0.00 3.43
1533 3088 3.911365 CAGCGAGATCGAGTTGCTATTAG 59.089 47.826 11.11 0.00 43.02 1.73
1550 3105 3.340034 ACCCGATTTAACATTTCAGCGA 58.660 40.909 0.00 0.00 0.00 4.93
1551 3106 3.757745 ACCCGATTTAACATTTCAGCG 57.242 42.857 0.00 0.00 0.00 5.18
1564 3119 5.656480 GTGTGCCAATTAATAAACCCGATT 58.344 37.500 0.00 0.00 0.00 3.34
1603 5013 1.621107 TCGATCTAACGTTTCACCGC 58.379 50.000 5.91 0.00 34.70 5.68
1643 5065 6.528537 TTAGTGCAACATTTGGAGCATAAT 57.471 33.333 0.00 0.00 41.43 1.28
1700 5146 5.743026 TCGAGCACATTTTAGTTTGTTCA 57.257 34.783 0.00 0.00 0.00 3.18
1738 5186 1.227380 CGAATCCCTGGCTTCTCGG 60.227 63.158 0.00 0.00 0.00 4.63
1749 5197 5.067283 ACAATTATTGGTTACAGCGAATCCC 59.933 40.000 9.88 0.00 34.12 3.85
1750 5198 6.131544 ACAATTATTGGTTACAGCGAATCC 57.868 37.500 9.88 0.00 34.12 3.01
1751 5199 7.638683 GTGTACAATTATTGGTTACAGCGAATC 59.361 37.037 9.88 0.00 34.12 2.52
1752 5200 7.414762 GGTGTACAATTATTGGTTACAGCGAAT 60.415 37.037 16.39 0.00 33.78 3.34
1757 5205 5.875910 TCGGGTGTACAATTATTGGTTACAG 59.124 40.000 9.88 0.11 34.12 2.74
1793 5241 5.470777 CCGTTACCATTTGACCTTGTTCTAA 59.529 40.000 0.00 0.00 0.00 2.10
1797 5245 2.295070 GCCGTTACCATTTGACCTTGTT 59.705 45.455 0.00 0.00 0.00 2.83
1799 5247 1.201414 GGCCGTTACCATTTGACCTTG 59.799 52.381 0.00 0.00 0.00 3.61
1807 5255 3.105283 AGTTCTCTAGGCCGTTACCATT 58.895 45.455 0.00 0.00 0.00 3.16
1811 5259 1.533547 GCGAGTTCTCTAGGCCGTTAC 60.534 57.143 0.00 0.00 0.00 2.50
1812 5260 0.737219 GCGAGTTCTCTAGGCCGTTA 59.263 55.000 0.00 0.00 0.00 3.18
1813 5261 1.248785 TGCGAGTTCTCTAGGCCGTT 61.249 55.000 0.00 0.00 0.00 4.44
1814 5262 1.248785 TTGCGAGTTCTCTAGGCCGT 61.249 55.000 0.00 0.00 0.00 5.68
1815 5263 0.108804 TTTGCGAGTTCTCTAGGCCG 60.109 55.000 0.00 0.00 0.00 6.13
1816 5264 1.066787 ACTTTGCGAGTTCTCTAGGCC 60.067 52.381 0.00 0.00 33.92 5.19
1817 5265 2.263945 GACTTTGCGAGTTCTCTAGGC 58.736 52.381 0.00 0.00 39.19 3.93
1818 5266 3.057174 AGTGACTTTGCGAGTTCTCTAGG 60.057 47.826 0.00 0.00 39.19 3.02
1819 5267 4.167554 AGTGACTTTGCGAGTTCTCTAG 57.832 45.455 0.00 0.00 39.19 2.43
1820 5268 4.585955 AAGTGACTTTGCGAGTTCTCTA 57.414 40.909 0.00 0.00 39.19 2.43
1821 5269 3.460857 AAGTGACTTTGCGAGTTCTCT 57.539 42.857 0.00 0.00 39.19 3.10
1822 5270 4.537936 AAAAGTGACTTTGCGAGTTCTC 57.462 40.909 11.83 0.00 39.19 2.87
1823 5271 4.272748 GGTAAAAGTGACTTTGCGAGTTCT 59.727 41.667 11.83 0.00 39.19 3.01
1824 5272 4.524749 GGTAAAAGTGACTTTGCGAGTTC 58.475 43.478 11.83 0.00 39.19 3.01
1825 5273 3.001939 CGGTAAAAGTGACTTTGCGAGTT 59.998 43.478 11.83 0.00 39.19 3.01
1826 5274 2.542595 CGGTAAAAGTGACTTTGCGAGT 59.457 45.455 11.83 0.00 42.70 4.18
1827 5275 2.096417 CCGGTAAAAGTGACTTTGCGAG 60.096 50.000 11.83 4.39 33.64 5.03
1828 5276 1.868498 CCGGTAAAAGTGACTTTGCGA 59.132 47.619 11.83 0.00 33.64 5.10
1968 5423 5.009631 CCTTTATCTGTCAATGGTGGAACA 58.990 41.667 0.00 0.00 39.98 3.18
2033 5491 7.124901 AGAGAGTGAATGTGTCATAACCTGTAT 59.875 37.037 0.00 0.00 38.90 2.29
2069 5531 7.297391 GGGTGAATAAAATGATGTTTTGTTGC 58.703 34.615 0.98 0.00 0.00 4.17
2163 7166 5.166398 TCTAAAGGTCTTTGCGCTACTAAC 58.834 41.667 9.73 0.13 34.23 2.34
2192 7200 9.438291 CGTGTTTGAAATATATCCAAGAATGAC 57.562 33.333 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.