Multiple sequence alignment - TraesCS3A01G472600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G472600 chr3A 100.000 2411 0 0 1 2411 703845549 703843139 0.000000e+00 4453.0
1 TraesCS3A01G472600 chr3D 90.891 2009 111 39 206 2161 570838884 570840873 0.000000e+00 2630.0
2 TraesCS3A01G472600 chr3D 94.924 197 10 0 2215 2411 570841446 570841642 2.330000e-80 309.0
3 TraesCS3A01G472600 chr3B 88.064 1064 85 23 206 1238 757930257 757931309 0.000000e+00 1223.0
4 TraesCS3A01G472600 chr3B 97.468 79 2 0 1837 1915 757931308 757931386 4.180000e-28 135.0
5 TraesCS3A01G472600 chr3B 93.976 83 5 0 2225 2307 757931461 757931543 2.520000e-25 126.0
6 TraesCS3A01G472600 chr3B 85.542 83 7 3 70 151 757929893 757929971 5.520000e-12 82.4
7 TraesCS3A01G472600 chr2A 83.352 895 114 24 657 1541 205915179 205914310 0.000000e+00 795.0
8 TraesCS3A01G472600 chr2A 79.021 143 20 6 341 476 51575974 51575835 3.300000e-14 89.8
9 TraesCS3A01G472600 chr2D 88.198 627 69 4 913 1535 192184353 192184978 0.000000e+00 743.0
10 TraesCS3A01G472600 chr2B 82.531 893 108 23 669 1541 248139537 248138673 0.000000e+00 741.0
11 TraesCS3A01G472600 chr6B 85.041 615 52 26 206 793 35207272 35207873 7.420000e-165 590.0
12 TraesCS3A01G472600 chr6B 84.715 615 54 26 206 793 35208874 35209475 1.610000e-161 579.0
13 TraesCS3A01G472600 chr6B 83.333 612 68 16 206 793 301913265 301913866 3.530000e-148 534.0
14 TraesCS3A01G472600 chr6B 81.565 575 70 17 206 756 301948221 301948783 2.200000e-120 442.0
15 TraesCS3A01G472600 chr6B 96.875 32 1 0 150 181 35207050 35207081 1.000000e-03 54.7
16 TraesCS3A01G472600 chr6B 96.875 32 1 0 150 181 35208652 35208683 1.000000e-03 54.7
17 TraesCS3A01G472600 chr4B 84.765 617 54 26 211 799 68129487 68128883 1.240000e-162 582.0
18 TraesCS3A01G472600 chr1B 82.899 614 72 16 210 799 480239691 480239087 2.750000e-144 521.0
19 TraesCS3A01G472600 chr6D 84.615 65 9 1 2004 2067 328820058 328819994 2.000000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G472600 chr3A 703843139 703845549 2410 True 4453.0 4453 100.0000 1 2411 1 chr3A.!!$R1 2410
1 TraesCS3A01G472600 chr3D 570838884 570841642 2758 False 1469.5 2630 92.9075 206 2411 2 chr3D.!!$F1 2205
2 TraesCS3A01G472600 chr3B 757929893 757931543 1650 False 391.6 1223 91.2625 70 2307 4 chr3B.!!$F1 2237
3 TraesCS3A01G472600 chr2A 205914310 205915179 869 True 795.0 795 83.3520 657 1541 1 chr2A.!!$R2 884
4 TraesCS3A01G472600 chr2D 192184353 192184978 625 False 743.0 743 88.1980 913 1535 1 chr2D.!!$F1 622
5 TraesCS3A01G472600 chr2B 248138673 248139537 864 True 741.0 741 82.5310 669 1541 1 chr2B.!!$R1 872
6 TraesCS3A01G472600 chr6B 301913265 301913866 601 False 534.0 534 83.3330 206 793 1 chr6B.!!$F1 587
7 TraesCS3A01G472600 chr6B 301948221 301948783 562 False 442.0 442 81.5650 206 756 1 chr6B.!!$F2 550
8 TraesCS3A01G472600 chr6B 35207050 35209475 2425 False 319.6 590 90.8765 150 793 4 chr6B.!!$F3 643
9 TraesCS3A01G472600 chr4B 68128883 68129487 604 True 582.0 582 84.7650 211 799 1 chr4B.!!$R1 588
10 TraesCS3A01G472600 chr1B 480239087 480239691 604 True 521.0 521 82.8990 210 799 1 chr1B.!!$R1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.1023 GACAGCCACCAACCAAACAC 59.898 55.0 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 3501 0.846015 CCTCCATTATCCCAGTGGCA 59.154 55.0 2.61 0.0 33.01 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.172106 TTTGCCCCCTCGTGTGGA 61.172 61.111 0.00 0.00 0.00 4.02
18 19 3.485346 TTTGCCCCCTCGTGTGGAC 62.485 63.158 0.00 0.00 0.00 4.02
20 21 4.394712 GCCCCCTCGTGTGGACAG 62.395 72.222 0.00 0.00 0.00 3.51
21 22 4.394712 CCCCCTCGTGTGGACAGC 62.395 72.222 0.00 0.00 0.00 4.40
22 23 4.394712 CCCCTCGTGTGGACAGCC 62.395 72.222 0.00 0.00 0.00 4.85
23 24 3.625897 CCCTCGTGTGGACAGCCA 61.626 66.667 0.00 0.00 43.47 4.75
31 32 3.011014 TGGACAGCCACCAACCAA 58.989 55.556 0.00 0.00 39.92 3.67
32 33 1.307986 TGGACAGCCACCAACCAAA 59.692 52.632 0.00 0.00 39.92 3.28
33 34 1.040339 TGGACAGCCACCAACCAAAC 61.040 55.000 0.00 0.00 39.92 2.93
34 35 1.040339 GGACAGCCACCAACCAAACA 61.040 55.000 0.00 0.00 0.00 2.83
35 36 0.102300 GACAGCCACCAACCAAACAC 59.898 55.000 0.00 0.00 0.00 3.32
36 37 1.326951 ACAGCCACCAACCAAACACC 61.327 55.000 0.00 0.00 0.00 4.16
37 38 1.000993 AGCCACCAACCAAACACCA 59.999 52.632 0.00 0.00 0.00 4.17
38 39 1.142965 GCCACCAACCAAACACCAC 59.857 57.895 0.00 0.00 0.00 4.16
39 40 1.819905 CCACCAACCAAACACCACC 59.180 57.895 0.00 0.00 0.00 4.61
40 41 1.435515 CACCAACCAAACACCACCG 59.564 57.895 0.00 0.00 0.00 4.94
41 42 1.032657 CACCAACCAAACACCACCGA 61.033 55.000 0.00 0.00 0.00 4.69
42 43 0.323542 ACCAACCAAACACCACCGAA 60.324 50.000 0.00 0.00 0.00 4.30
43 44 0.818296 CCAACCAAACACCACCGAAA 59.182 50.000 0.00 0.00 0.00 3.46
44 45 1.410882 CCAACCAAACACCACCGAAAT 59.589 47.619 0.00 0.00 0.00 2.17
45 46 2.159028 CCAACCAAACACCACCGAAATT 60.159 45.455 0.00 0.00 0.00 1.82
46 47 3.526534 CAACCAAACACCACCGAAATTT 58.473 40.909 0.00 0.00 0.00 1.82
47 48 4.441634 CCAACCAAACACCACCGAAATTTA 60.442 41.667 0.00 0.00 0.00 1.40
48 49 5.293560 CAACCAAACACCACCGAAATTTAT 58.706 37.500 0.00 0.00 0.00 1.40
49 50 5.128992 ACCAAACACCACCGAAATTTATC 57.871 39.130 0.00 0.00 0.00 1.75
50 51 4.830600 ACCAAACACCACCGAAATTTATCT 59.169 37.500 0.00 0.00 0.00 1.98
51 52 5.048294 ACCAAACACCACCGAAATTTATCTC 60.048 40.000 0.00 0.00 0.00 2.75
52 53 5.399013 CAAACACCACCGAAATTTATCTCC 58.601 41.667 0.00 0.00 0.00 3.71
53 54 4.569719 ACACCACCGAAATTTATCTCCT 57.430 40.909 0.00 0.00 0.00 3.69
54 55 4.514401 ACACCACCGAAATTTATCTCCTC 58.486 43.478 0.00 0.00 0.00 3.71
55 56 4.019681 ACACCACCGAAATTTATCTCCTCA 60.020 41.667 0.00 0.00 0.00 3.86
56 57 4.332819 CACCACCGAAATTTATCTCCTCAC 59.667 45.833 0.00 0.00 0.00 3.51
57 58 3.555956 CCACCGAAATTTATCTCCTCACG 59.444 47.826 0.00 0.00 0.00 4.35
58 59 3.001330 CACCGAAATTTATCTCCTCACGC 59.999 47.826 0.00 0.00 0.00 5.34
59 60 2.218759 CCGAAATTTATCTCCTCACGCG 59.781 50.000 3.53 3.53 0.00 6.01
60 61 3.113322 CGAAATTTATCTCCTCACGCGA 58.887 45.455 15.93 0.00 0.00 5.87
61 62 3.550275 CGAAATTTATCTCCTCACGCGAA 59.450 43.478 15.93 0.00 0.00 4.70
62 63 4.032445 CGAAATTTATCTCCTCACGCGAAA 59.968 41.667 15.93 0.00 0.00 3.46
63 64 5.445407 CGAAATTTATCTCCTCACGCGAAAA 60.445 40.000 15.93 0.00 0.00 2.29
64 65 5.470845 AATTTATCTCCTCACGCGAAAAG 57.529 39.130 15.93 6.65 0.00 2.27
65 66 3.861276 TTATCTCCTCACGCGAAAAGA 57.139 42.857 15.93 8.50 0.00 2.52
66 67 2.743636 ATCTCCTCACGCGAAAAGAA 57.256 45.000 15.93 0.00 0.00 2.52
67 68 2.519377 TCTCCTCACGCGAAAAGAAA 57.481 45.000 15.93 0.00 0.00 2.52
68 69 2.828877 TCTCCTCACGCGAAAAGAAAA 58.171 42.857 15.93 0.00 0.00 2.29
69 70 2.542595 TCTCCTCACGCGAAAAGAAAAC 59.457 45.455 15.93 0.00 0.00 2.43
70 71 1.600485 TCCTCACGCGAAAAGAAAACC 59.400 47.619 15.93 0.00 0.00 3.27
71 72 1.602377 CCTCACGCGAAAAGAAAACCT 59.398 47.619 15.93 0.00 0.00 3.50
72 73 2.803956 CCTCACGCGAAAAGAAAACCTA 59.196 45.455 15.93 0.00 0.00 3.08
73 74 3.363673 CCTCACGCGAAAAGAAAACCTAC 60.364 47.826 15.93 0.00 0.00 3.18
84 85 0.963962 AAAACCTACCTCTCGCACGA 59.036 50.000 0.00 0.00 0.00 4.35
88 89 1.342174 ACCTACCTCTCGCACGAAAAA 59.658 47.619 0.00 0.00 0.00 1.94
89 90 2.028385 ACCTACCTCTCGCACGAAAAAT 60.028 45.455 0.00 0.00 0.00 1.82
90 91 2.348666 CCTACCTCTCGCACGAAAAATG 59.651 50.000 0.00 0.00 0.00 2.32
91 92 1.156736 ACCTCTCGCACGAAAAATGG 58.843 50.000 0.00 0.00 0.00 3.16
137 140 2.278857 CCGATCGGAGCGGTTGAG 60.279 66.667 30.62 0.26 43.66 3.02
183 208 2.545810 CTCCCTCTTTCCTCCACTCTT 58.454 52.381 0.00 0.00 0.00 2.85
189 214 3.580458 CTCTTTCCTCCACTCTTCTTCCA 59.420 47.826 0.00 0.00 0.00 3.53
190 215 3.973973 TCTTTCCTCCACTCTTCTTCCAA 59.026 43.478 0.00 0.00 0.00 3.53
191 216 3.771577 TTCCTCCACTCTTCTTCCAAC 57.228 47.619 0.00 0.00 0.00 3.77
192 217 1.618837 TCCTCCACTCTTCTTCCAACG 59.381 52.381 0.00 0.00 0.00 4.10
193 218 1.433534 CTCCACTCTTCTTCCAACGC 58.566 55.000 0.00 0.00 0.00 4.84
194 219 1.001406 CTCCACTCTTCTTCCAACGCT 59.999 52.381 0.00 0.00 0.00 5.07
198 223 1.001406 ACTCTTCTTCCAACGCTCTGG 59.999 52.381 0.00 0.00 37.87 3.86
199 224 0.321671 TCTTCTTCCAACGCTCTGGG 59.678 55.000 1.46 0.00 37.06 4.45
201 226 2.032528 CTTCCAACGCTCTGGGCA 59.967 61.111 0.00 0.00 41.91 5.36
202 227 1.600636 CTTCCAACGCTCTGGGCAA 60.601 57.895 0.00 0.00 41.91 4.52
203 228 1.856265 CTTCCAACGCTCTGGGCAAC 61.856 60.000 0.00 0.00 41.91 4.17
204 229 3.726517 CCAACGCTCTGGGCAACG 61.727 66.667 0.00 0.00 41.91 4.10
260 529 2.749621 CTCTTCCCCACTCAAAAATCGG 59.250 50.000 0.00 0.00 0.00 4.18
267 536 4.141574 CCCCACTCAAAAATCGGAGGTATA 60.142 45.833 0.00 0.00 35.45 1.47
272 541 3.146847 CAAAAATCGGAGGTATAGCCCC 58.853 50.000 0.00 0.00 38.26 5.80
321 598 6.038356 CCATGTTCTTCTATGGTTTCATTGC 58.962 40.000 0.00 0.00 39.18 3.56
346 623 7.415989 GCATGGACAGTGAGAATGTATTTGATT 60.416 37.037 0.00 0.00 0.00 2.57
349 626 7.448161 TGGACAGTGAGAATGTATTTGATTGTT 59.552 33.333 0.00 0.00 0.00 2.83
350 627 7.752239 GGACAGTGAGAATGTATTTGATTGTTG 59.248 37.037 0.00 0.00 0.00 3.33
351 628 8.169977 ACAGTGAGAATGTATTTGATTGTTGT 57.830 30.769 0.00 0.00 0.00 3.32
352 629 8.077991 ACAGTGAGAATGTATTTGATTGTTGTG 58.922 33.333 0.00 0.00 0.00 3.33
353 630 7.061441 CAGTGAGAATGTATTTGATTGTTGTGC 59.939 37.037 0.00 0.00 0.00 4.57
355 632 7.543172 GTGAGAATGTATTTGATTGTTGTGCAT 59.457 33.333 0.00 0.00 0.00 3.96
357 634 9.740239 GAGAATGTATTTGATTGTTGTGCATAT 57.260 29.630 0.00 0.00 0.00 1.78
402 687 2.665165 TGGACAGTGGACATGCTTTTT 58.335 42.857 0.00 0.00 0.00 1.94
403 688 2.361757 TGGACAGTGGACATGCTTTTTG 59.638 45.455 0.00 0.00 0.00 2.44
407 692 2.540931 CAGTGGACATGCTTTTTGTTGC 59.459 45.455 0.00 0.00 0.00 4.17
409 694 0.508213 GGACATGCTTTTTGTTGCGC 59.492 50.000 0.00 0.00 0.00 6.09
467 752 8.500753 TTCAAGTTATGTGTATTGTATGGACC 57.499 34.615 0.00 0.00 0.00 4.46
476 761 5.590259 GTGTATTGTATGGACCTTGAGCATT 59.410 40.000 0.00 0.00 0.00 3.56
490 775 2.874086 TGAGCATTGCAGAATACATCCG 59.126 45.455 11.91 0.00 0.00 4.18
493 778 2.033801 GCATTGCAGAATACATCCGCTT 59.966 45.455 3.15 0.00 32.40 4.68
497 782 4.335400 TGCAGAATACATCCGCTTCATA 57.665 40.909 0.00 0.00 32.40 2.15
570 855 7.592439 AGAGCCGTAGTTATTAGAACAAAAC 57.408 36.000 0.00 0.00 0.00 2.43
573 858 8.387190 AGCCGTAGTTATTAGAACAAAACTTT 57.613 30.769 0.00 0.00 34.23 2.66
616 929 8.469902 CGTTGAGTCATACTATTTCATAACGTC 58.530 37.037 0.00 0.00 0.00 4.34
618 931 7.431249 TGAGTCATACTATTTCATAACGTCCC 58.569 38.462 0.00 0.00 0.00 4.46
619 932 7.287005 TGAGTCATACTATTTCATAACGTCCCT 59.713 37.037 0.00 0.00 0.00 4.20
631 944 2.922740 ACGTCCCTTTGACTAGCAAA 57.077 45.000 10.54 10.54 43.89 3.68
649 962 3.636764 GCAAAGGGTTGAAGAGAGGAAAA 59.363 43.478 0.00 0.00 36.83 2.29
652 965 6.218746 CAAAGGGTTGAAGAGAGGAAAAATG 58.781 40.000 0.00 0.00 36.83 2.32
818 2737 6.528774 GGCAACACCATTTACGTTATTTTAGG 59.471 38.462 0.00 0.00 38.86 2.69
819 2738 7.306953 GCAACACCATTTACGTTATTTTAGGA 58.693 34.615 0.00 0.00 0.00 2.94
820 2739 7.483691 GCAACACCATTTACGTTATTTTAGGAG 59.516 37.037 0.00 0.00 0.00 3.69
863 2783 6.415573 TCCTTTGAGCTATACTTTCCTTTCC 58.584 40.000 0.00 0.00 0.00 3.13
869 2789 5.990668 AGCTATACTTTCCTTTCCGTCATT 58.009 37.500 0.00 0.00 0.00 2.57
950 2884 5.819991 TGGAGCAGATTTCTTGGAATTACT 58.180 37.500 0.00 0.00 0.00 2.24
955 2889 8.499403 AGCAGATTTCTTGGAATTACTTACTC 57.501 34.615 0.00 0.00 0.00 2.59
989 2923 8.902540 TGAATAATTGCTGGACGTTATTAGAT 57.097 30.769 0.00 0.00 29.56 1.98
1030 2967 8.415950 TTTTCTTGAACCAATGATAGCCTTAA 57.584 30.769 0.00 0.00 0.00 1.85
1058 2995 7.323895 CGAGACACATTATCAAGACGGTTATAG 59.676 40.741 0.00 0.00 0.00 1.31
1078 3015 6.887886 ATAGAGATGGTTATGATGATGGCT 57.112 37.500 0.00 0.00 0.00 4.75
1086 3023 4.702131 GGTTATGATGATGGCTTGGTATCC 59.298 45.833 0.00 0.00 0.00 2.59
1113 3050 1.842381 AAGAAGGAAGGCAGGTCGGG 61.842 60.000 0.00 0.00 0.00 5.14
1550 3488 3.370978 CACGTATGTTGCTAAAGGTCTGG 59.629 47.826 0.00 0.00 0.00 3.86
1563 3501 1.707427 AGGTCTGGAAGGAAATGTGCT 59.293 47.619 0.00 0.00 0.00 4.40
1567 3505 2.657297 GGAAGGAAATGTGCTGCCA 58.343 52.632 0.00 0.00 40.80 4.92
1587 3525 3.264450 CCACTGGGATAATGGAGGATACC 59.736 52.174 0.00 0.00 35.33 2.73
1635 3573 9.050601 CACTTAAAGTCTCTTCAACTTGAGAAT 57.949 33.333 0.00 0.00 40.47 2.40
1647 3585 8.690203 TTCAACTTGAGAATATTTTGGAGTCA 57.310 30.769 0.00 0.00 0.00 3.41
1718 3656 3.961480 TGCTGTACTGAACACATAGCT 57.039 42.857 3.61 0.00 33.45 3.32
1929 3867 7.438160 TCAGGTGACGCTTCTAATTTATACATG 59.562 37.037 0.00 0.00 0.00 3.21
1943 3881 3.692257 ATACATGATGTCAGGCTAGGC 57.308 47.619 8.55 8.55 0.00 3.93
1978 3916 2.811431 TCGAACACAAAATCGCAATCCT 59.189 40.909 0.00 0.00 38.87 3.24
1980 3918 2.352503 ACACAAAATCGCAATCCTGC 57.647 45.000 0.00 0.00 45.75 4.85
2010 3948 0.740868 ATGCTGTCAACGGGTGATCG 60.741 55.000 0.00 0.00 38.90 3.69
2029 3967 2.227149 TCGTCGAGATCGGAACTCAAAA 59.773 45.455 14.54 0.00 40.29 2.44
2046 3984 6.169800 ACTCAAAAGAGCTCCTAGATTGTTC 58.830 40.000 10.93 0.00 0.00 3.18
2140 4078 3.185797 GCGAAGTGTAACACCCTACTTTG 59.814 47.826 0.00 0.00 41.43 2.77
2147 4085 2.358322 ACACCCTACTTTGGTTGTGG 57.642 50.000 0.00 0.00 32.46 4.17
2148 4086 1.847737 ACACCCTACTTTGGTTGTGGA 59.152 47.619 0.00 0.00 32.46 4.02
2149 4087 2.158667 ACACCCTACTTTGGTTGTGGAG 60.159 50.000 0.00 0.00 32.46 3.86
2163 4101 3.912496 TGTGGAGAGAGAGAGAGAGAG 57.088 52.381 0.00 0.00 0.00 3.20
2164 4102 3.449918 TGTGGAGAGAGAGAGAGAGAGA 58.550 50.000 0.00 0.00 0.00 3.10
2165 4103 3.452264 TGTGGAGAGAGAGAGAGAGAGAG 59.548 52.174 0.00 0.00 0.00 3.20
2166 4104 3.706594 GTGGAGAGAGAGAGAGAGAGAGA 59.293 52.174 0.00 0.00 0.00 3.10
2167 4105 3.963374 TGGAGAGAGAGAGAGAGAGAGAG 59.037 52.174 0.00 0.00 0.00 3.20
2168 4106 3.323403 GGAGAGAGAGAGAGAGAGAGAGG 59.677 56.522 0.00 0.00 0.00 3.69
2169 4107 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
2170 4108 3.051803 AGAGAGAGAGAGAGAGAGAGGGA 60.052 52.174 0.00 0.00 0.00 4.20
2171 4109 3.312890 AGAGAGAGAGAGAGAGAGGGAG 58.687 54.545 0.00 0.00 0.00 4.30
2172 4110 3.051803 AGAGAGAGAGAGAGAGAGGGAGA 60.052 52.174 0.00 0.00 0.00 3.71
2173 4111 3.312890 AGAGAGAGAGAGAGAGGGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
2174 4112 2.370189 GAGAGAGAGAGAGAGGGAGAGG 59.630 59.091 0.00 0.00 0.00 3.69
2175 4113 1.421646 GAGAGAGAGAGAGGGAGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
2176 4114 1.010793 AGAGAGAGAGAGGGAGAGGGA 59.989 57.143 0.00 0.00 0.00 4.20
2177 4115 1.421646 GAGAGAGAGAGGGAGAGGGAG 59.578 61.905 0.00 0.00 0.00 4.30
2178 4116 1.010793 AGAGAGAGAGGGAGAGGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
2179 4117 1.421646 GAGAGAGAGGGAGAGGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
2180 4118 0.478507 GAGAGAGGGAGAGGGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
2181 4119 0.998945 AGAGAGGGAGAGGGAGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
2182 4120 0.996762 GAGAGGGAGAGGGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
2183 4121 0.998945 AGAGGGAGAGGGAGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
2184 4122 0.996762 GAGGGAGAGGGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
2185 4123 0.998945 AGGGAGAGGGAGAGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
2186 4124 1.541672 GGAGAGGGAGAGGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
2187 4125 1.541672 GAGAGGGAGAGGGAGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
2188 4126 0.996762 GAGAGGGAGAGGGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
2189 4127 0.998945 AGAGGGAGAGGGAGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
2190 4128 0.996762 GAGGGAGAGGGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
2191 4129 0.998945 AGGGAGAGGGAGAGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
2192 4130 1.541672 GGAGAGGGAGAGGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
2193 4131 1.541672 GAGAGGGAGAGGGAGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
2194 4132 0.996762 GAGAGGGAGAGGGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
2195 4133 0.998945 AGAGGGAGAGGGAGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
2196 4134 0.996762 GAGGGAGAGGGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
2197 4135 0.998945 AGGGAGAGGGAGAGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
2198 4136 0.996762 GGGAGAGGGAGAGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
2199 4137 1.158007 GGAGAGGGAGAGGGAGAGAT 58.842 60.000 0.00 0.00 0.00 2.75
2200 4138 1.503347 GGAGAGGGAGAGGGAGAGATT 59.497 57.143 0.00 0.00 0.00 2.40
2201 4139 2.490902 GGAGAGGGAGAGGGAGAGATTC 60.491 59.091 0.00 0.00 0.00 2.52
2204 4654 4.058731 AGAGGGAGAGGGAGAGATTCTTA 58.941 47.826 0.00 0.00 0.00 2.10
2233 4692 3.692424 AACACCCCGTTGAGTACAC 57.308 52.632 0.00 0.00 36.12 2.90
2266 4725 0.111639 TGCCCTTAACCCACTTGTCC 59.888 55.000 0.00 0.00 0.00 4.02
2380 4839 6.454715 CCAACGATGACTGATATAATCATGCG 60.455 42.308 0.00 6.92 38.85 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.172106 TCCACACGAGGGGGCAAA 61.172 61.111 0.00 0.00 0.00 3.68
1 2 3.948719 GTCCACACGAGGGGGCAA 61.949 66.667 0.00 0.00 0.00 4.52
3 4 4.394712 CTGTCCACACGAGGGGGC 62.395 72.222 0.00 0.00 0.00 5.80
4 5 4.394712 GCTGTCCACACGAGGGGG 62.395 72.222 0.00 0.00 0.00 5.40
6 7 3.625897 TGGCTGTCCACACGAGGG 61.626 66.667 0.00 0.00 37.47 4.30
14 15 1.040339 GTTTGGTTGGTGGCTGTCCA 61.040 55.000 0.00 0.00 40.85 4.02
15 16 1.040339 TGTTTGGTTGGTGGCTGTCC 61.040 55.000 0.00 0.00 0.00 4.02
16 17 0.102300 GTGTTTGGTTGGTGGCTGTC 59.898 55.000 0.00 0.00 0.00 3.51
17 18 1.326951 GGTGTTTGGTTGGTGGCTGT 61.327 55.000 0.00 0.00 0.00 4.40
18 19 1.326213 TGGTGTTTGGTTGGTGGCTG 61.326 55.000 0.00 0.00 0.00 4.85
19 20 1.000993 TGGTGTTTGGTTGGTGGCT 59.999 52.632 0.00 0.00 0.00 4.75
20 21 1.142965 GTGGTGTTTGGTTGGTGGC 59.857 57.895 0.00 0.00 0.00 5.01
21 22 1.819905 GGTGGTGTTTGGTTGGTGG 59.180 57.895 0.00 0.00 0.00 4.61
22 23 1.032657 TCGGTGGTGTTTGGTTGGTG 61.033 55.000 0.00 0.00 0.00 4.17
23 24 0.323542 TTCGGTGGTGTTTGGTTGGT 60.324 50.000 0.00 0.00 0.00 3.67
24 25 0.818296 TTTCGGTGGTGTTTGGTTGG 59.182 50.000 0.00 0.00 0.00 3.77
25 26 2.880963 ATTTCGGTGGTGTTTGGTTG 57.119 45.000 0.00 0.00 0.00 3.77
26 27 3.897141 AAATTTCGGTGGTGTTTGGTT 57.103 38.095 0.00 0.00 0.00 3.67
27 28 4.830600 AGATAAATTTCGGTGGTGTTTGGT 59.169 37.500 0.00 0.00 0.00 3.67
28 29 5.385509 AGATAAATTTCGGTGGTGTTTGG 57.614 39.130 0.00 0.00 0.00 3.28
29 30 5.183140 AGGAGATAAATTTCGGTGGTGTTTG 59.817 40.000 0.00 0.00 0.00 2.93
30 31 5.321927 AGGAGATAAATTTCGGTGGTGTTT 58.678 37.500 0.00 0.00 0.00 2.83
31 32 4.918588 AGGAGATAAATTTCGGTGGTGTT 58.081 39.130 0.00 0.00 0.00 3.32
32 33 4.019681 TGAGGAGATAAATTTCGGTGGTGT 60.020 41.667 0.00 0.00 0.00 4.16
33 34 4.332819 GTGAGGAGATAAATTTCGGTGGTG 59.667 45.833 0.00 0.00 0.00 4.17
34 35 4.514401 GTGAGGAGATAAATTTCGGTGGT 58.486 43.478 0.00 0.00 0.00 4.16
35 36 3.555956 CGTGAGGAGATAAATTTCGGTGG 59.444 47.826 0.00 0.00 0.00 4.61
36 37 3.001330 GCGTGAGGAGATAAATTTCGGTG 59.999 47.826 0.00 0.00 0.00 4.94
37 38 3.195661 GCGTGAGGAGATAAATTTCGGT 58.804 45.455 0.00 0.00 0.00 4.69
38 39 2.218759 CGCGTGAGGAGATAAATTTCGG 59.781 50.000 0.00 0.00 0.00 4.30
39 40 3.113322 TCGCGTGAGGAGATAAATTTCG 58.887 45.455 5.77 0.00 0.00 3.46
40 41 5.464965 TTTCGCGTGAGGAGATAAATTTC 57.535 39.130 5.77 0.00 0.00 2.17
41 42 5.642063 TCTTTTCGCGTGAGGAGATAAATTT 59.358 36.000 5.77 0.00 0.00 1.82
42 43 5.175859 TCTTTTCGCGTGAGGAGATAAATT 58.824 37.500 5.77 0.00 0.00 1.82
43 44 4.755411 TCTTTTCGCGTGAGGAGATAAAT 58.245 39.130 5.77 0.00 0.00 1.40
44 45 4.182693 TCTTTTCGCGTGAGGAGATAAA 57.817 40.909 5.77 0.00 0.00 1.40
45 46 3.861276 TCTTTTCGCGTGAGGAGATAA 57.139 42.857 5.77 0.00 0.00 1.75
46 47 3.861276 TTCTTTTCGCGTGAGGAGATA 57.139 42.857 5.77 4.01 0.00 1.98
47 48 2.743636 TTCTTTTCGCGTGAGGAGAT 57.256 45.000 5.77 0.00 0.00 2.75
48 49 2.519377 TTTCTTTTCGCGTGAGGAGA 57.481 45.000 5.77 4.06 0.00 3.71
49 50 2.349532 GGTTTTCTTTTCGCGTGAGGAG 60.350 50.000 5.77 1.53 0.00 3.69
50 51 1.600485 GGTTTTCTTTTCGCGTGAGGA 59.400 47.619 5.77 0.00 0.00 3.71
51 52 1.602377 AGGTTTTCTTTTCGCGTGAGG 59.398 47.619 5.77 0.00 0.00 3.86
52 53 3.363673 GGTAGGTTTTCTTTTCGCGTGAG 60.364 47.826 5.77 2.71 0.00 3.51
53 54 2.545106 GGTAGGTTTTCTTTTCGCGTGA 59.455 45.455 5.77 0.00 0.00 4.35
54 55 2.546789 AGGTAGGTTTTCTTTTCGCGTG 59.453 45.455 5.77 0.00 0.00 5.34
55 56 2.804527 GAGGTAGGTTTTCTTTTCGCGT 59.195 45.455 5.77 0.00 0.00 6.01
56 57 3.064931 AGAGGTAGGTTTTCTTTTCGCG 58.935 45.455 0.00 0.00 0.00 5.87
57 58 3.123116 CGAGAGGTAGGTTTTCTTTTCGC 59.877 47.826 0.00 0.00 0.00 4.70
58 59 3.123116 GCGAGAGGTAGGTTTTCTTTTCG 59.877 47.826 0.00 0.00 0.00 3.46
59 60 4.062991 TGCGAGAGGTAGGTTTTCTTTTC 58.937 43.478 0.00 0.00 0.00 2.29
60 61 3.813724 GTGCGAGAGGTAGGTTTTCTTTT 59.186 43.478 0.00 0.00 0.00 2.27
61 62 3.400255 GTGCGAGAGGTAGGTTTTCTTT 58.600 45.455 0.00 0.00 0.00 2.52
62 63 2.609737 CGTGCGAGAGGTAGGTTTTCTT 60.610 50.000 0.00 0.00 0.00 2.52
63 64 1.067776 CGTGCGAGAGGTAGGTTTTCT 60.068 52.381 0.00 0.00 0.00 2.52
64 65 1.068055 TCGTGCGAGAGGTAGGTTTTC 60.068 52.381 0.00 0.00 0.00 2.29
65 66 0.963962 TCGTGCGAGAGGTAGGTTTT 59.036 50.000 0.00 0.00 0.00 2.43
66 67 0.963962 TTCGTGCGAGAGGTAGGTTT 59.036 50.000 0.00 0.00 0.00 3.27
67 68 0.963962 TTTCGTGCGAGAGGTAGGTT 59.036 50.000 0.00 0.00 0.00 3.50
68 69 0.963962 TTTTCGTGCGAGAGGTAGGT 59.036 50.000 0.00 0.00 0.00 3.08
69 70 2.074547 TTTTTCGTGCGAGAGGTAGG 57.925 50.000 0.00 0.00 0.00 3.18
70 71 2.348666 CCATTTTTCGTGCGAGAGGTAG 59.651 50.000 0.00 0.00 0.00 3.18
71 72 2.343101 CCATTTTTCGTGCGAGAGGTA 58.657 47.619 0.00 0.00 0.00 3.08
72 73 1.156736 CCATTTTTCGTGCGAGAGGT 58.843 50.000 0.00 0.00 0.00 3.85
73 74 0.447801 CCCATTTTTCGTGCGAGAGG 59.552 55.000 0.00 0.00 0.00 3.69
84 85 4.067913 CCGCCGCTGCCCATTTTT 62.068 61.111 0.00 0.00 0.00 1.94
115 118 2.049063 CCGCTCCGATCGGGAATC 60.049 66.667 32.79 17.71 46.61 2.52
152 177 4.179599 GAGGGAGGGAGGAGGGGG 62.180 77.778 0.00 0.00 0.00 5.40
183 208 2.347490 GCCCAGAGCGTTGGAAGA 59.653 61.111 10.68 0.00 40.87 2.87
260 529 2.344129 GCAGCGGGGCTATACCTC 59.656 66.667 0.00 0.00 36.40 3.85
321 598 6.990341 TCAAATACATTCTCACTGTCCATG 57.010 37.500 0.00 0.00 0.00 3.66
360 637 9.950680 GTCCATTAGACAACCAAATATATGTTG 57.049 33.333 11.09 11.09 45.55 3.33
378 655 3.272574 AGCATGTCCACTGTCCATTAG 57.727 47.619 0.00 0.00 0.00 1.73
402 687 0.522626 CTCATTGTCCATGCGCAACA 59.477 50.000 17.11 12.53 32.13 3.33
403 688 0.799534 GCTCATTGTCCATGCGCAAC 60.800 55.000 17.11 9.37 42.37 4.17
407 692 5.556355 AATATATGCTCATTGTCCATGCG 57.444 39.130 0.00 0.00 32.13 4.73
409 694 8.021396 CACTCAAATATATGCTCATTGTCCATG 58.979 37.037 0.00 0.00 0.00 3.66
467 752 4.554134 CGGATGTATTCTGCAATGCTCAAG 60.554 45.833 6.82 0.00 0.00 3.02
523 808 0.035152 TTCTGCAGGGCACATGGTAG 60.035 55.000 15.13 0.00 33.79 3.18
530 815 2.421619 GCTCTATATTCTGCAGGGCAC 58.578 52.381 15.13 0.00 35.77 5.01
573 858 9.063615 TGACTCAACGCAAAGAGATACTATATA 57.936 33.333 3.60 0.00 35.83 0.86
578 863 4.521130 TGACTCAACGCAAAGAGATACT 57.479 40.909 3.60 0.00 35.83 2.12
579 864 6.037098 AGTATGACTCAACGCAAAGAGATAC 58.963 40.000 3.60 2.94 35.83 2.24
580 865 6.208988 AGTATGACTCAACGCAAAGAGATA 57.791 37.500 3.60 0.00 35.83 1.98
581 866 5.078411 AGTATGACTCAACGCAAAGAGAT 57.922 39.130 3.60 0.00 35.83 2.75
582 867 4.521130 AGTATGACTCAACGCAAAGAGA 57.479 40.909 3.60 0.00 35.83 3.10
593 878 7.287005 AGGGACGTTATGAAATAGTATGACTCA 59.713 37.037 0.00 0.00 0.00 3.41
619 932 4.787551 TCTTCAACCCTTTGCTAGTCAAA 58.212 39.130 10.54 10.54 42.01 2.69
631 944 5.073428 GTCATTTTTCCTCTCTTCAACCCT 58.927 41.667 0.00 0.00 0.00 4.34
649 962 4.019174 CAGGCAAAAGTAGGGATGTCATT 58.981 43.478 0.00 0.00 0.00 2.57
652 965 1.745653 GCAGGCAAAAGTAGGGATGTC 59.254 52.381 0.00 0.00 0.00 3.06
793 2711 6.528774 CCTAAAATAACGTAAATGGTGTTGCC 59.471 38.462 0.00 0.00 37.90 4.52
833 2752 7.890655 AGGAAAGTATAGCTCAAAGGAAACAAT 59.109 33.333 0.00 0.00 0.00 2.71
854 2774 4.394729 ACAAGCTAATGACGGAAAGGAAA 58.605 39.130 0.00 0.00 0.00 3.13
863 2783 9.941991 CAATGAAAATAAAACAAGCTAATGACG 57.058 29.630 0.00 0.00 0.00 4.35
950 2884 6.434028 AGCAATTATTCAGTTTGCAGGAGTAA 59.566 34.615 9.26 0.00 46.28 2.24
955 2889 4.178540 CCAGCAATTATTCAGTTTGCAGG 58.821 43.478 9.26 6.75 46.28 4.85
989 2923 6.310941 TCAAGAAAATCCATGGTAACCAAGA 58.689 36.000 12.58 0.00 36.95 3.02
1030 2967 4.174009 CCGTCTTGATAATGTGTCTCGTT 58.826 43.478 0.00 0.00 0.00 3.85
1058 2995 4.458295 CCAAGCCATCATCATAACCATCTC 59.542 45.833 0.00 0.00 0.00 2.75
1078 3015 3.054655 CCTTCTTCCTTTCCGGATACCAA 60.055 47.826 4.15 0.00 42.70 3.67
1086 3023 1.271379 TGCCTTCCTTCTTCCTTTCCG 60.271 52.381 0.00 0.00 0.00 4.30
1113 3050 6.008331 ACCTACTTGGAAACCCATCTTTAAC 58.992 40.000 0.00 0.00 39.71 2.01
1131 3068 5.137412 AGAATCCTAGCTCTTCACCTACT 57.863 43.478 0.00 0.00 0.00 2.57
1246 3183 6.534634 ACAAAGGATAGTTGCTTAGAAGTGT 58.465 36.000 0.00 0.00 31.50 3.55
1448 3385 5.827797 AGTTTCAAAGTGGTGCTGAGATTAA 59.172 36.000 0.00 0.00 0.00 1.40
1449 3386 5.239306 CAGTTTCAAAGTGGTGCTGAGATTA 59.761 40.000 0.00 0.00 0.00 1.75
1550 3488 1.068055 CAGTGGCAGCACATTTCCTTC 60.068 52.381 0.00 0.00 0.00 3.46
1563 3501 0.846015 CCTCCATTATCCCAGTGGCA 59.154 55.000 2.61 0.00 33.01 4.92
1567 3505 4.140447 TCAGGTATCCTCCATTATCCCAGT 60.140 45.833 0.00 0.00 0.00 4.00
1587 3525 5.120830 GTGGTTGTTAGATACACTGCTTCAG 59.879 44.000 0.00 0.00 36.21 3.02
1690 3628 6.539649 TGTGTTCAGTACAGCAAAGAATAC 57.460 37.500 0.00 0.00 37.45 1.89
1801 3739 7.173907 GACATTTGTCAGGTAAGCATATAGCAT 59.826 37.037 5.84 0.00 44.64 3.79
1886 3824 6.039047 GTCACCTGACGTCCAGTTAGATATTA 59.961 42.308 14.12 0.00 41.33 0.98
1929 3867 1.020437 GCAAAGCCTAGCCTGACATC 58.980 55.000 0.00 0.00 0.00 3.06
1943 3881 5.778161 TGTGTTCGAGTATACATGCAAAG 57.222 39.130 5.50 0.00 0.00 2.77
1980 3918 3.302935 CGTTGACAGCATGCTAGCATTAG 60.303 47.826 27.59 20.54 42.53 1.73
2010 3948 3.834610 TCTTTTGAGTTCCGATCTCGAC 58.165 45.455 0.22 0.00 43.02 4.20
2029 3967 1.410882 GCCGAACAATCTAGGAGCTCT 59.589 52.381 14.64 2.18 0.00 4.09
2046 3984 0.538746 AGTGTTTTAACCCCTGGCCG 60.539 55.000 0.00 0.00 0.00 6.13
2120 4058 4.711399 ACCAAAGTAGGGTGTTACACTTC 58.289 43.478 15.44 8.16 37.23 3.01
2140 4078 3.016736 CTCTCTCTCTCTCTCCACAACC 58.983 54.545 0.00 0.00 0.00 3.77
2147 4085 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
2148 4086 3.051803 TCCCTCTCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
2149 4087 3.309296 TCCCTCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
2163 4101 0.996762 TCCCTCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
2164 4102 0.998945 CTCCCTCTCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
2165 4103 0.996762 TCTCCCTCTCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
2166 4104 0.998945 CTCTCCCTCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
2167 4105 1.541672 CTCTCCCTCTCCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
2168 4106 1.541672 CCTCTCCCTCTCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
2169 4107 0.996762 TCCCTCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
2170 4108 0.998945 CTCCCTCTCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
2171 4109 0.996762 TCTCCCTCTCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
2172 4110 0.998945 CTCTCCCTCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
2173 4111 1.541672 CTCTCCCTCTCCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
2174 4112 1.541672 CCTCTCCCTCTCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
2175 4113 0.996762 TCCCTCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
2176 4114 0.998945 CTCCCTCTCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
2177 4115 0.996762 TCTCCCTCTCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
2178 4116 0.998945 CTCTCCCTCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
2179 4117 0.996762 TCTCTCCCTCTCCCTCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
2180 4118 1.158007 ATCTCTCCCTCTCCCTCTCC 58.842 60.000 0.00 0.00 0.00 3.71
2181 4119 2.447047 AGAATCTCTCCCTCTCCCTCTC 59.553 54.545 0.00 0.00 0.00 3.20
2182 4120 2.513602 AGAATCTCTCCCTCTCCCTCT 58.486 52.381 0.00 0.00 0.00 3.69
2183 4121 3.328535 AAGAATCTCTCCCTCTCCCTC 57.671 52.381 0.00 0.00 0.00 4.30
2184 4122 4.058731 TCTAAGAATCTCTCCCTCTCCCT 58.941 47.826 0.00 0.00 0.00 4.20
2185 4123 4.463050 TCTAAGAATCTCTCCCTCTCCC 57.537 50.000 0.00 0.00 0.00 4.30
2186 4124 5.659079 TGTTTCTAAGAATCTCTCCCTCTCC 59.341 44.000 0.00 0.00 0.00 3.71
2187 4125 6.783708 TGTTTCTAAGAATCTCTCCCTCTC 57.216 41.667 0.00 0.00 0.00 3.20
2188 4126 7.747809 AATGTTTCTAAGAATCTCTCCCTCT 57.252 36.000 0.00 0.00 0.00 3.69
2189 4127 8.478877 TGTAATGTTTCTAAGAATCTCTCCCTC 58.521 37.037 0.00 0.00 0.00 4.30
2190 4128 8.380742 TGTAATGTTTCTAAGAATCTCTCCCT 57.619 34.615 0.00 0.00 0.00 4.20
2191 4129 8.884726 GTTGTAATGTTTCTAAGAATCTCTCCC 58.115 37.037 0.00 0.00 0.00 4.30
2192 4130 9.436957 TGTTGTAATGTTTCTAAGAATCTCTCC 57.563 33.333 0.00 0.00 0.00 3.71
2194 4132 9.220767 GGTGTTGTAATGTTTCTAAGAATCTCT 57.779 33.333 0.00 0.00 0.00 3.10
2195 4133 8.451748 GGGTGTTGTAATGTTTCTAAGAATCTC 58.548 37.037 0.00 0.00 0.00 2.75
2196 4134 7.393515 GGGGTGTTGTAATGTTTCTAAGAATCT 59.606 37.037 0.00 0.00 0.00 2.40
2197 4135 7.535997 GGGGTGTTGTAATGTTTCTAAGAATC 58.464 38.462 0.00 0.00 0.00 2.52
2198 4136 6.150474 CGGGGTGTTGTAATGTTTCTAAGAAT 59.850 38.462 0.00 0.00 0.00 2.40
2199 4137 5.470777 CGGGGTGTTGTAATGTTTCTAAGAA 59.529 40.000 0.00 0.00 0.00 2.52
2200 4138 4.998672 CGGGGTGTTGTAATGTTTCTAAGA 59.001 41.667 0.00 0.00 0.00 2.10
2201 4139 4.758165 ACGGGGTGTTGTAATGTTTCTAAG 59.242 41.667 0.00 0.00 0.00 2.18
2204 4654 3.217681 ACGGGGTGTTGTAATGTTTCT 57.782 42.857 0.00 0.00 0.00 2.52
2233 4692 3.525268 AAGGGCATTTTAGGCAAATCG 57.475 42.857 0.00 0.00 32.24 3.34
2266 4725 5.163913 CGAGCTGACAGAAACCTCATTTTAG 60.164 44.000 6.65 0.00 0.00 1.85
2377 4836 8.814235 GCTAGAAGTTAAGAATTATTGTACGCA 58.186 33.333 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.