Multiple sequence alignment - TraesCS3A01G471800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G471800 chr3A 100.000 2920 0 0 1 2920 703185996 703183077 0.000000e+00 5393.0
1 TraesCS3A01G471800 chr3A 78.138 1482 258 35 1033 2485 703741152 703742596 0.000000e+00 881.0
2 TraesCS3A01G471800 chr3A 77.724 1441 248 38 1082 2481 703784297 703785705 0.000000e+00 815.0
3 TraesCS3A01G471800 chr3A 86.861 274 36 0 1433 1706 655860801 655861074 1.270000e-79 307.0
4 TraesCS3A01G471800 chr3A 85.766 274 39 0 1433 1706 655722448 655722721 1.280000e-74 291.0
5 TraesCS3A01G471800 chr3A 83.462 260 34 8 1033 1286 655860431 655860687 2.190000e-57 233.0
6 TraesCS3A01G471800 chr3A 82.443 262 37 8 1031 1286 655722076 655722334 1.700000e-53 220.0
7 TraesCS3A01G471800 chr3A 100.000 46 0 0 3597 3642 703182400 703182355 6.480000e-13 86.1
8 TraesCS3A01G471800 chr3B 94.502 2110 87 4 819 2919 757519774 757517685 0.000000e+00 3227.0
9 TraesCS3A01G471800 chr3B 80.000 940 150 16 1082 2008 757865762 757866676 0.000000e+00 660.0
10 TraesCS3A01G471800 chr3B 81.742 838 77 40 1 817 757520639 757519857 6.640000e-177 630.0
11 TraesCS3A01G471800 chr3B 76.766 637 107 30 1815 2433 684912789 684912176 5.870000e-83 318.0
12 TraesCS3A01G471800 chr3B 81.671 371 62 5 2121 2485 757866784 757867154 1.640000e-78 303.0
13 TraesCS3A01G471800 chr3B 82.941 340 50 7 2152 2485 685166344 685166681 2.130000e-77 300.0
14 TraesCS3A01G471800 chr3B 83.137 255 39 4 1454 1706 685150065 685150317 2.830000e-56 230.0
15 TraesCS3A01G471800 chr3B 77.976 336 44 21 1 319 136102762 136103084 2.230000e-42 183.0
16 TraesCS3A01G471800 chr3B 81.395 215 35 5 1077 1286 684942595 684942381 1.740000e-38 171.0
17 TraesCS3A01G471800 chr3D 77.078 1444 254 42 1082 2481 570772506 570773916 0.000000e+00 761.0
18 TraesCS3A01G471800 chr3D 78.350 1030 170 32 1488 2485 570570572 570571580 5.170000e-173 617.0
19 TraesCS3A01G471800 chr3D 80.499 682 96 23 1772 2428 520294959 520295628 4.230000e-134 488.0
20 TraesCS3A01G471800 chr5D 86.275 357 38 7 467 813 25325628 25325983 9.550000e-101 377.0
21 TraesCS3A01G471800 chr2D 81.053 190 27 4 2689 2878 56083574 56083754 3.790000e-30 143.0
22 TraesCS3A01G471800 chr7A 81.290 155 24 4 2689 2843 540900983 540900834 1.780000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G471800 chr3A 703182355 703185996 3641 True 2739.55 5393 100.0000 1 3642 2 chr3A.!!$R1 3641
1 TraesCS3A01G471800 chr3A 703741152 703742596 1444 False 881.00 881 78.1380 1033 2485 1 chr3A.!!$F1 1452
2 TraesCS3A01G471800 chr3A 703784297 703785705 1408 False 815.00 815 77.7240 1082 2481 1 chr3A.!!$F2 1399
3 TraesCS3A01G471800 chr3A 655860431 655861074 643 False 270.00 307 85.1615 1033 1706 2 chr3A.!!$F4 673
4 TraesCS3A01G471800 chr3A 655722076 655722721 645 False 255.50 291 84.1045 1031 1706 2 chr3A.!!$F3 675
5 TraesCS3A01G471800 chr3B 757517685 757520639 2954 True 1928.50 3227 88.1220 1 2919 2 chr3B.!!$R3 2918
6 TraesCS3A01G471800 chr3B 757865762 757867154 1392 False 481.50 660 80.8355 1082 2485 2 chr3B.!!$F4 1403
7 TraesCS3A01G471800 chr3B 684912176 684912789 613 True 318.00 318 76.7660 1815 2433 1 chr3B.!!$R1 618
8 TraesCS3A01G471800 chr3D 570772506 570773916 1410 False 761.00 761 77.0780 1082 2481 1 chr3D.!!$F3 1399
9 TraesCS3A01G471800 chr3D 570570572 570571580 1008 False 617.00 617 78.3500 1488 2485 1 chr3D.!!$F2 997
10 TraesCS3A01G471800 chr3D 520294959 520295628 669 False 488.00 488 80.4990 1772 2428 1 chr3D.!!$F1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 507 0.035152 CTTGGCAGTACTGGGATGCA 60.035 55.0 23.95 0.0 41.78 3.96 F
577 595 0.392193 AGGAGTTCATTGAGCTGCCG 60.392 55.0 16.40 0.0 32.35 5.69 F
1486 1620 0.684535 TCACGAGCCTCACCATGAAA 59.315 50.0 0.00 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2430 2626 0.389817 CGGACAATTGGACGCTCAGA 60.390 55.000 10.83 0.0 0.0 3.27 R
2499 2695 2.035442 GGTGAAGAACGAGCTGGCC 61.035 63.158 0.00 0.0 0.0 5.36 R
2833 3031 0.179000 CGAGCTTGCCACCCTAAGAT 59.821 55.000 0.00 0.0 0.0 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 4.098807 GGGTAATACCAATGCCACGAATTT 59.901 41.667 12.03 0.00 41.02 1.82
72 73 7.923878 GGTAATACCAATGCCACGAATTTATTT 59.076 33.333 4.24 0.00 38.42 1.40
74 75 8.419076 AATACCAATGCCACGAATTTATTTTC 57.581 30.769 0.00 0.00 0.00 2.29
76 77 5.174395 CCAATGCCACGAATTTATTTTCCA 58.826 37.500 0.00 0.00 0.00 3.53
77 78 5.816777 CCAATGCCACGAATTTATTTTCCAT 59.183 36.000 0.00 0.00 0.00 3.41
78 79 6.238157 CCAATGCCACGAATTTATTTTCCATG 60.238 38.462 0.00 0.00 0.00 3.66
79 80 4.753233 TGCCACGAATTTATTTTCCATGG 58.247 39.130 4.97 4.97 34.05 3.66
80 81 4.464244 TGCCACGAATTTATTTTCCATGGA 59.536 37.500 11.44 11.44 33.29 3.41
82 83 5.872070 GCCACGAATTTATTTTCCATGGAAA 59.128 36.000 31.75 31.75 41.69 3.13
169 170 7.667043 TTTGTAAGGATAACACTGATGTCAC 57.333 36.000 0.00 0.00 38.45 3.67
184 185 8.607459 CACTGATGTCACTAATCCATTACTTTC 58.393 37.037 0.00 0.00 0.00 2.62
337 349 4.487948 TGTGTATAGTCACTAACCGTTGC 58.512 43.478 0.00 0.00 38.90 4.17
346 358 2.421775 CACTAACCGTTGCATGCCAATA 59.578 45.455 16.68 0.00 35.55 1.90
384 396 5.973899 TTAGCAAAGCCAATATGTGTGAA 57.026 34.783 0.00 0.00 0.00 3.18
389 401 5.531634 CAAAGCCAATATGTGTGAAAGTGT 58.468 37.500 0.00 0.00 0.00 3.55
397 409 9.507280 CCAATATGTGTGAAAGTGTTATTCATC 57.493 33.333 0.00 0.00 38.89 2.92
402 414 6.765512 TGTGTGAAAGTGTTATTCATCACTCA 59.234 34.615 15.77 0.00 42.95 3.41
404 416 7.959651 GTGTGAAAGTGTTATTCATCACTCATC 59.040 37.037 0.00 0.00 42.95 2.92
441 453 4.319177 CAACAATATACTAGAGCAGCCCC 58.681 47.826 0.00 0.00 0.00 5.80
448 460 2.324541 ACTAGAGCAGCCCCTAATCAG 58.675 52.381 0.00 0.00 0.00 2.90
450 462 2.478872 AGAGCAGCCCCTAATCAGTA 57.521 50.000 0.00 0.00 0.00 2.74
457 469 6.614657 AGCAGCCCCTAATCAGTATAAAAAT 58.385 36.000 0.00 0.00 0.00 1.82
460 472 9.025041 GCAGCCCCTAATCAGTATAAAAATAAT 57.975 33.333 0.00 0.00 0.00 1.28
484 496 2.571653 TGTAATAGACTGGCTTGGCAGT 59.428 45.455 26.07 26.07 0.00 4.40
485 497 3.772572 TGTAATAGACTGGCTTGGCAGTA 59.227 43.478 25.88 14.46 0.00 2.74
486 498 2.990066 ATAGACTGGCTTGGCAGTAC 57.010 50.000 25.88 19.14 0.00 2.73
487 499 1.938585 TAGACTGGCTTGGCAGTACT 58.061 50.000 25.88 23.51 0.00 2.73
488 500 0.322975 AGACTGGCTTGGCAGTACTG 59.677 55.000 25.88 18.93 0.00 2.74
489 501 0.674895 GACTGGCTTGGCAGTACTGG 60.675 60.000 25.88 8.63 0.00 4.00
490 502 1.377725 CTGGCTTGGCAGTACTGGG 60.378 63.158 23.95 0.00 0.00 4.45
491 503 1.841302 CTGGCTTGGCAGTACTGGGA 61.841 60.000 23.95 0.00 0.00 4.37
492 504 1.207488 TGGCTTGGCAGTACTGGGAT 61.207 55.000 23.95 0.00 0.00 3.85
493 505 0.749454 GGCTTGGCAGTACTGGGATG 60.749 60.000 23.95 0.00 0.00 3.51
494 506 1.379642 GCTTGGCAGTACTGGGATGC 61.380 60.000 23.95 10.13 39.25 3.91
495 507 0.035152 CTTGGCAGTACTGGGATGCA 60.035 55.000 23.95 0.00 41.78 3.96
496 508 0.035152 TTGGCAGTACTGGGATGCAG 60.035 55.000 23.95 0.00 41.78 4.41
497 509 1.821332 GGCAGTACTGGGATGCAGC 60.821 63.158 23.95 7.00 41.78 5.25
498 510 1.222936 GCAGTACTGGGATGCAGCT 59.777 57.895 23.95 0.00 39.75 4.24
499 511 0.393537 GCAGTACTGGGATGCAGCTT 60.394 55.000 23.95 0.00 39.75 3.74
500 512 1.376543 CAGTACTGGGATGCAGCTTG 58.623 55.000 15.49 0.00 0.00 4.01
501 513 0.393537 AGTACTGGGATGCAGCTTGC 60.394 55.000 0.22 1.70 45.29 4.01
543 561 1.039856 TATGCTGCTGCTACCGATCA 58.960 50.000 17.00 0.00 40.48 2.92
547 565 1.539929 GCTGCTGCTACCGATCAGAAT 60.540 52.381 8.53 0.00 36.03 2.40
559 577 3.309138 CCGATCAGAATCACAAGCTTCAG 59.691 47.826 0.00 0.00 31.76 3.02
577 595 0.392193 AGGAGTTCATTGAGCTGCCG 60.392 55.000 16.40 0.00 32.35 5.69
628 646 3.884037 AACAGAGTTTGGGGTCAATCT 57.116 42.857 0.00 0.00 36.09 2.40
630 648 4.287766 ACAGAGTTTGGGGTCAATCTAC 57.712 45.455 0.00 0.00 34.21 2.59
632 650 4.020128 ACAGAGTTTGGGGTCAATCTACTC 60.020 45.833 0.00 0.00 37.99 2.59
633 651 3.519913 AGAGTTTGGGGTCAATCTACTCC 59.480 47.826 0.00 0.00 38.26 3.85
644 665 7.416777 GGGGTCAATCTACTCCAAAATTCATTC 60.417 40.741 0.00 0.00 40.05 2.67
649 670 8.954350 CAATCTACTCCAAAATTCATTCTCAGT 58.046 33.333 0.00 0.00 0.00 3.41
651 672 7.106239 TCTACTCCAAAATTCATTCTCAGTCC 58.894 38.462 0.00 0.00 0.00 3.85
683 704 2.024414 GCCAGTCTCAACCTTGTTTGT 58.976 47.619 0.00 0.00 0.00 2.83
695 724 2.673368 CCTTGTTTGTCGAGTGGCTATC 59.327 50.000 0.00 0.00 0.00 2.08
700 729 3.510388 TTGTCGAGTGGCTATCAGAAG 57.490 47.619 0.00 0.00 0.00 2.85
702 731 3.291584 TGTCGAGTGGCTATCAGAAGAT 58.708 45.455 0.00 0.00 38.29 2.40
705 734 2.035704 CGAGTGGCTATCAGAAGATGCT 59.964 50.000 0.00 0.00 35.67 3.79
708 737 1.342496 TGGCTATCAGAAGATGCTCGG 59.658 52.381 0.00 0.00 35.67 4.63
725 754 2.101582 CTCGGCATAGGTAGTCTTTGCT 59.898 50.000 7.98 0.00 45.63 3.91
733 762 0.989890 GTAGTCTTTGCTGCGTACCG 59.010 55.000 0.00 0.00 0.00 4.02
735 764 0.944311 AGTCTTTGCTGCGTACCGTG 60.944 55.000 0.00 0.00 0.00 4.94
736 765 1.666553 TCTTTGCTGCGTACCGTGG 60.667 57.895 0.00 0.00 0.00 4.94
737 766 3.308878 CTTTGCTGCGTACCGTGGC 62.309 63.158 0.00 0.00 0.00 5.01
741 770 2.860293 CTGCGTACCGTGGCTTTG 59.140 61.111 0.00 0.00 0.00 2.77
742 771 3.308878 CTGCGTACCGTGGCTTTGC 62.309 63.158 0.00 0.00 0.00 3.68
758 787 4.318760 GGCTTTGCCGAATGTTTCTTTTTC 60.319 41.667 0.00 0.00 39.62 2.29
759 788 4.507756 GCTTTGCCGAATGTTTCTTTTTCT 59.492 37.500 0.00 0.00 0.00 2.52
764 793 4.441087 GCCGAATGTTTCTTTTTCTCACAC 59.559 41.667 0.00 0.00 0.00 3.82
766 795 4.976116 CGAATGTTTCTTTTTCTCACACCC 59.024 41.667 0.00 0.00 0.00 4.61
767 796 5.449862 CGAATGTTTCTTTTTCTCACACCCA 60.450 40.000 0.00 0.00 0.00 4.51
783 812 1.165270 CCCAGTTTAGGTCGGCTTTG 58.835 55.000 0.00 0.00 0.00 2.77
813 844 5.125739 TGTTTTTGGTTGACACTCGGTTTAT 59.874 36.000 0.00 0.00 0.00 1.40
817 848 3.181464 TGGTTGACACTCGGTTTATGTGA 60.181 43.478 0.00 0.00 35.83 3.58
818 849 3.432252 GGTTGACACTCGGTTTATGTGAG 59.568 47.826 0.00 0.00 35.83 3.51
819 850 2.683968 TGACACTCGGTTTATGTGAGC 58.316 47.619 0.00 0.00 35.83 4.26
820 851 2.036604 TGACACTCGGTTTATGTGAGCA 59.963 45.455 0.00 0.00 35.83 4.26
821 852 2.412089 GACACTCGGTTTATGTGAGCAC 59.588 50.000 0.00 0.00 35.83 4.40
822 853 2.224185 ACACTCGGTTTATGTGAGCACA 60.224 45.455 5.70 5.70 46.44 4.57
864 976 6.672147 CCAAGGTTTAGATGTCTTGACTTTG 58.328 40.000 0.00 10.55 38.96 2.77
865 977 6.263168 CCAAGGTTTAGATGTCTTGACTTTGT 59.737 38.462 13.73 0.00 38.96 2.83
866 978 7.444183 CCAAGGTTTAGATGTCTTGACTTTGTA 59.556 37.037 13.73 0.00 38.96 2.41
867 979 7.964604 AGGTTTAGATGTCTTGACTTTGTAC 57.035 36.000 2.35 0.00 0.00 2.90
868 980 7.506114 AGGTTTAGATGTCTTGACTTTGTACA 58.494 34.615 0.00 0.00 0.00 2.90
869 981 7.441458 AGGTTTAGATGTCTTGACTTTGTACAC 59.559 37.037 0.00 0.00 0.00 2.90
870 982 7.441458 GGTTTAGATGTCTTGACTTTGTACACT 59.559 37.037 0.00 0.00 0.00 3.55
871 983 8.827677 GTTTAGATGTCTTGACTTTGTACACTT 58.172 33.333 0.00 0.00 0.00 3.16
873 985 7.948278 AGATGTCTTGACTTTGTACACTTAC 57.052 36.000 0.00 0.00 0.00 2.34
874 986 6.641314 AGATGTCTTGACTTTGTACACTTACG 59.359 38.462 0.00 0.00 0.00 3.18
875 987 5.653507 TGTCTTGACTTTGTACACTTACGT 58.346 37.500 0.00 0.00 0.00 3.57
930 1042 3.871006 TGGAAAGATCGATGATGAAACCG 59.129 43.478 0.54 0.00 0.00 4.44
952 1064 3.313526 GCTGCTAATTCACGTTCCATGAT 59.686 43.478 0.00 0.00 0.00 2.45
953 1065 4.201950 GCTGCTAATTCACGTTCCATGATT 60.202 41.667 0.00 0.00 0.00 2.57
955 1067 4.335315 TGCTAATTCACGTTCCATGATTCC 59.665 41.667 0.00 0.00 0.00 3.01
956 1068 4.335315 GCTAATTCACGTTCCATGATTCCA 59.665 41.667 0.00 0.00 0.00 3.53
957 1069 5.163663 GCTAATTCACGTTCCATGATTCCAA 60.164 40.000 0.00 0.00 0.00 3.53
959 1071 5.720371 ATTCACGTTCCATGATTCCAAAA 57.280 34.783 0.00 0.00 0.00 2.44
960 1072 4.497473 TCACGTTCCATGATTCCAAAAC 57.503 40.909 0.00 0.00 0.00 2.43
961 1073 4.141287 TCACGTTCCATGATTCCAAAACT 58.859 39.130 0.00 0.00 0.00 2.66
962 1074 5.309638 TCACGTTCCATGATTCCAAAACTA 58.690 37.500 0.00 0.00 0.00 2.24
1006 1125 1.378531 TTCTTTCGGCATCAATCCGG 58.621 50.000 0.00 0.00 46.43 5.14
1028 1147 2.703007 ACCATCTTCCCTAGCTAGCAAG 59.297 50.000 18.83 17.35 0.00 4.01
1074 1193 1.147600 CCCGCCACAACCCCTATAC 59.852 63.158 0.00 0.00 0.00 1.47
1153 1272 4.980805 GCGACCAGTGACCGGCAA 62.981 66.667 0.00 0.00 0.00 4.52
1219 1344 1.794714 ATACCATCTCCGTCAAGGCT 58.205 50.000 0.00 0.00 40.77 4.58
1486 1620 0.684535 TCACGAGCCTCACCATGAAA 59.315 50.000 0.00 0.00 0.00 2.69
1783 1930 2.440796 CCGTACACCCCGCTCCTA 60.441 66.667 0.00 0.00 0.00 2.94
2011 2164 3.453353 ACCACGCCATAATAAGGTACAGT 59.547 43.478 0.00 0.00 0.00 3.55
2012 2165 4.080751 ACCACGCCATAATAAGGTACAGTT 60.081 41.667 0.00 0.00 0.00 3.16
2016 2169 5.758296 ACGCCATAATAAGGTACAGTTCATG 59.242 40.000 0.00 0.00 0.00 3.07
2041 2200 4.911514 AATGCTTTCAACGTAAACCACT 57.088 36.364 0.00 0.00 0.00 4.00
2063 2227 1.344438 CACCAGTACAGAGTTCCTGCA 59.656 52.381 0.00 0.00 46.81 4.41
2088 2257 1.293062 AAGCTCCATGATGGGTGTCT 58.707 50.000 12.26 1.04 38.32 3.41
2214 2405 3.625764 GCCTCGACATGCCTTACATTAAA 59.374 43.478 0.00 0.00 36.64 1.52
2259 2454 1.603802 CGCAACTGGACACTGTTCAAT 59.396 47.619 0.00 0.00 36.74 2.57
2277 2472 5.109500 TCAATGATAACTACATGGTGCCA 57.891 39.130 0.00 0.00 0.00 4.92
2283 2478 1.289160 ACTACATGGTGCCAGTGGAT 58.711 50.000 15.20 0.00 0.00 3.41
2430 2626 2.042831 GCTCGGGTTCAGCATGCTT 61.043 57.895 19.98 0.00 36.82 3.91
2499 2695 1.314730 AAACACTAGTGGGTTTGCCG 58.685 50.000 26.12 0.00 35.99 5.69
2503 2699 3.561120 CTAGTGGGTTTGCCGGCCA 62.561 63.158 26.77 11.12 34.97 5.36
2528 2724 2.031682 CGTTCTTCACCTTTTCAGCAGG 60.032 50.000 0.00 0.00 37.45 4.85
2543 2739 5.222079 TCAGCAGGTGTAAAAGTATGTGA 57.778 39.130 0.00 0.00 0.00 3.58
2573 2771 2.738846 GGCTGACATTCTACACACACTG 59.261 50.000 0.00 0.00 0.00 3.66
2598 2796 4.273480 AGTCACTTCAATTTCACTTGGACG 59.727 41.667 0.00 0.00 0.00 4.79
2603 2801 4.088056 TCAATTTCACTTGGACGGGTTA 57.912 40.909 0.00 0.00 0.00 2.85
2618 2816 5.476614 GACGGGTTAGAACTTTCACTGTAT 58.523 41.667 0.00 0.00 0.00 2.29
2646 2844 4.573201 ACTGTGTACTTGCAATAAACACGT 59.427 37.500 23.09 20.80 42.58 4.49
2649 2847 6.823531 TGTGTACTTGCAATAAACACGTATC 58.176 36.000 23.09 10.37 42.58 2.24
2684 2882 5.427481 TCGACCTAAATGGACCCTTTATCTT 59.573 40.000 2.81 0.00 39.71 2.40
2741 2939 5.526846 TGCAATTTGGGTCAGTTGATTTTTC 59.473 36.000 0.00 0.00 0.00 2.29
2782 2980 3.610911 CGGAGGCAAAGTAAAGAAGGAT 58.389 45.455 0.00 0.00 0.00 3.24
2789 2987 4.218417 GCAAAGTAAAGAAGGATGGAGCAA 59.782 41.667 0.00 0.00 0.00 3.91
2818 3016 3.513515 GAGATCTATCTTAGGGTGGCAGG 59.486 52.174 0.00 0.00 37.25 4.85
2833 3031 0.744414 GCAGGCTTGCCGACAATCTA 60.744 55.000 10.18 0.00 44.74 1.98
2840 3038 3.743396 GCTTGCCGACAATCTATCTTAGG 59.257 47.826 0.00 0.00 34.61 2.69
2844 3042 3.555168 GCCGACAATCTATCTTAGGGTGG 60.555 52.174 0.00 0.00 0.00 4.61
2847 3045 4.442893 CGACAATCTATCTTAGGGTGGCAA 60.443 45.833 0.00 0.00 0.00 4.52
2874 3072 3.555168 GCCAACGATCTATCTTAGGGGTG 60.555 52.174 0.00 0.00 0.00 4.61
2875 3073 3.641906 CCAACGATCTATCTTAGGGGTGT 59.358 47.826 0.00 0.00 0.00 4.16
2876 3074 4.501571 CCAACGATCTATCTTAGGGGTGTG 60.502 50.000 0.00 0.00 0.00 3.82
2877 3075 3.231818 ACGATCTATCTTAGGGGTGTGG 58.768 50.000 0.00 0.00 0.00 4.17
2878 3076 2.563179 CGATCTATCTTAGGGGTGTGGG 59.437 54.545 0.00 0.00 0.00 4.61
2879 3077 1.802553 TCTATCTTAGGGGTGTGGGC 58.197 55.000 0.00 0.00 0.00 5.36
2880 3078 0.765510 CTATCTTAGGGGTGTGGGCC 59.234 60.000 0.00 0.00 0.00 5.80
2905 3103 2.673341 AGAGTGCAGGCTCGACGA 60.673 61.111 0.00 0.00 40.26 4.20
2909 3107 0.320771 AGTGCAGGCTCGACGAAAAT 60.321 50.000 0.00 0.00 0.00 1.82
2912 3110 1.606668 TGCAGGCTCGACGAAAATTTT 59.393 42.857 2.28 2.28 0.00 1.82
2919 3117 3.424198 GCTCGACGAAAATTTTTGTTCCC 59.576 43.478 21.93 10.72 35.00 3.97
3614 3812 3.437642 ATGACAGGTGGTTTGGGTG 57.562 52.632 0.00 0.00 0.00 4.61
3615 3813 0.178964 ATGACAGGTGGTTTGGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
3616 3814 1.530655 GACAGGTGGTTTGGGTGGG 60.531 63.158 0.00 0.00 0.00 4.61
3617 3815 2.203625 CAGGTGGTTTGGGTGGGG 60.204 66.667 0.00 0.00 0.00 4.96
3618 3816 2.370403 AGGTGGTTTGGGTGGGGA 60.370 61.111 0.00 0.00 0.00 4.81
3619 3817 2.015726 AGGTGGTTTGGGTGGGGAA 61.016 57.895 0.00 0.00 0.00 3.97
3620 3818 1.533033 GGTGGTTTGGGTGGGGAAG 60.533 63.158 0.00 0.00 0.00 3.46
3621 3819 1.539665 GTGGTTTGGGTGGGGAAGA 59.460 57.895 0.00 0.00 0.00 2.87
3622 3820 0.105913 GTGGTTTGGGTGGGGAAGAA 60.106 55.000 0.00 0.00 0.00 2.52
3623 3821 0.187361 TGGTTTGGGTGGGGAAGAAG 59.813 55.000 0.00 0.00 0.00 2.85
3624 3822 0.481128 GGTTTGGGTGGGGAAGAAGA 59.519 55.000 0.00 0.00 0.00 2.87
3625 3823 1.077169 GGTTTGGGTGGGGAAGAAGAT 59.923 52.381 0.00 0.00 0.00 2.40
3626 3824 2.171003 GTTTGGGTGGGGAAGAAGATG 58.829 52.381 0.00 0.00 0.00 2.90
3627 3825 0.039618 TTGGGTGGGGAAGAAGATGC 59.960 55.000 0.00 0.00 0.00 3.91
3628 3826 1.139498 TGGGTGGGGAAGAAGATGCA 61.139 55.000 0.00 0.00 0.00 3.96
3629 3827 0.681243 GGGTGGGGAAGAAGATGCAC 60.681 60.000 0.00 0.00 0.00 4.57
3630 3828 0.038166 GGTGGGGAAGAAGATGCACA 59.962 55.000 0.00 0.00 0.00 4.57
3631 3829 1.341383 GGTGGGGAAGAAGATGCACAT 60.341 52.381 0.00 0.00 0.00 3.21
3632 3830 1.747355 GTGGGGAAGAAGATGCACATG 59.253 52.381 0.00 0.00 0.00 3.21
3633 3831 1.634973 TGGGGAAGAAGATGCACATGA 59.365 47.619 0.00 0.00 0.00 3.07
3634 3832 2.019984 GGGGAAGAAGATGCACATGAC 58.980 52.381 0.00 0.00 0.00 3.06
3635 3833 2.618816 GGGGAAGAAGATGCACATGACA 60.619 50.000 0.00 0.00 0.00 3.58
3636 3834 3.285484 GGGAAGAAGATGCACATGACAT 58.715 45.455 0.00 2.24 0.00 3.06
3637 3835 3.314635 GGGAAGAAGATGCACATGACATC 59.685 47.826 19.36 19.36 43.49 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.097892 GTGGCATTGGTATTACCCTTTCAG 59.902 45.833 10.37 0.00 37.50 3.02
146 147 7.004555 AGTGACATCAGTGTTATCCTTACAA 57.995 36.000 0.00 0.00 39.09 2.41
314 326 4.925054 GCAACGGTTAGTGACTATACACAA 59.075 41.667 0.00 0.00 42.45 3.33
323 335 0.168128 GGCATGCAACGGTTAGTGAC 59.832 55.000 21.36 0.00 0.00 3.67
384 396 9.725019 TTTGTAGATGAGTGATGAATAACACTT 57.275 29.630 0.00 0.00 45.54 3.16
389 401 7.568349 AGCCTTTGTAGATGAGTGATGAATAA 58.432 34.615 0.00 0.00 0.00 1.40
397 409 2.421424 GCCAAGCCTTTGTAGATGAGTG 59.579 50.000 0.00 0.00 32.21 3.51
398 410 2.619074 GGCCAAGCCTTTGTAGATGAGT 60.619 50.000 0.00 0.00 46.69 3.41
428 440 2.324541 CTGATTAGGGGCTGCTCTAGT 58.675 52.381 0.00 0.00 0.00 2.57
457 469 6.099125 TGCCAAGCCAGTCTATTACAGTATTA 59.901 38.462 0.00 0.00 0.00 0.98
460 472 3.772572 TGCCAAGCCAGTCTATTACAGTA 59.227 43.478 0.00 0.00 0.00 2.74
461 473 2.571653 TGCCAAGCCAGTCTATTACAGT 59.428 45.455 0.00 0.00 0.00 3.55
462 474 3.201290 CTGCCAAGCCAGTCTATTACAG 58.799 50.000 0.00 0.00 0.00 2.74
463 475 2.571653 ACTGCCAAGCCAGTCTATTACA 59.428 45.455 0.00 0.00 42.10 2.41
464 476 3.268023 ACTGCCAAGCCAGTCTATTAC 57.732 47.619 0.00 0.00 42.10 1.89
484 496 1.450134 CGCAAGCTGCATCCCAGTA 60.450 57.895 1.02 0.00 45.36 2.74
485 497 2.749044 CGCAAGCTGCATCCCAGT 60.749 61.111 1.02 0.00 45.36 4.00
498 510 3.286751 GCAGGGTCTTGTGCGCAA 61.287 61.111 14.00 12.92 0.00 4.85
502 514 2.639286 CAACGCAGGGTCTTGTGC 59.361 61.111 0.00 0.00 36.27 4.57
503 515 2.260869 CCCAACGCAGGGTCTTGTG 61.261 63.158 4.63 0.00 44.24 3.33
504 516 2.113139 CCCAACGCAGGGTCTTGT 59.887 61.111 4.63 0.00 44.24 3.16
511 523 1.750399 AGCATAAGCCCAACGCAGG 60.750 57.895 0.00 0.00 43.56 4.85
512 524 1.430632 CAGCATAAGCCCAACGCAG 59.569 57.895 0.00 0.00 43.56 5.18
513 525 2.699768 GCAGCATAAGCCCAACGCA 61.700 57.895 0.00 0.00 43.56 5.24
514 526 2.102946 GCAGCATAAGCCCAACGC 59.897 61.111 0.00 0.00 43.56 4.84
525 537 0.249784 CTGATCGGTAGCAGCAGCAT 60.250 55.000 3.17 0.00 45.49 3.79
543 561 4.202398 TGAACTCCTGAAGCTTGTGATTCT 60.202 41.667 2.10 0.00 39.16 2.40
547 565 3.777106 ATGAACTCCTGAAGCTTGTGA 57.223 42.857 2.10 0.00 0.00 3.58
559 577 0.674895 ACGGCAGCTCAATGAACTCC 60.675 55.000 0.00 0.00 0.00 3.85
603 621 0.822121 ACCCCAAACTCTGTTTCGGC 60.822 55.000 2.10 0.00 0.00 5.54
605 623 1.961793 TGACCCCAAACTCTGTTTCG 58.038 50.000 0.00 0.00 0.00 3.46
628 646 6.778821 TGGACTGAGAATGAATTTTGGAGTA 58.221 36.000 0.00 0.00 0.00 2.59
630 648 6.770746 ATGGACTGAGAATGAATTTTGGAG 57.229 37.500 0.00 0.00 0.00 3.86
632 650 6.810182 GTCAATGGACTGAGAATGAATTTTGG 59.190 38.462 0.00 0.00 40.99 3.28
633 651 6.810182 GGTCAATGGACTGAGAATGAATTTTG 59.190 38.462 0.00 0.00 43.77 2.44
644 665 2.419297 GGCTACTGGTCAATGGACTGAG 60.419 54.545 0.00 0.00 43.77 3.35
649 670 1.555075 GACTGGCTACTGGTCAATGGA 59.445 52.381 0.00 0.00 0.00 3.41
651 672 2.234661 TGAGACTGGCTACTGGTCAATG 59.765 50.000 0.00 0.00 32.98 2.82
683 704 2.035193 GCATCTTCTGATAGCCACTCGA 59.965 50.000 0.00 0.00 0.00 4.04
702 731 1.776662 AAGACTACCTATGCCGAGCA 58.223 50.000 1.01 1.01 44.86 4.26
705 734 2.108168 AGCAAAGACTACCTATGCCGA 58.892 47.619 0.00 0.00 37.73 5.54
708 737 1.594862 CGCAGCAAAGACTACCTATGC 59.405 52.381 0.00 0.00 37.28 3.14
735 764 2.438868 AAGAAACATTCGGCAAAGCC 57.561 45.000 0.00 0.00 46.75 4.35
736 765 4.507756 AGAAAAAGAAACATTCGGCAAAGC 59.492 37.500 0.00 0.00 34.02 3.51
737 766 5.748152 TGAGAAAAAGAAACATTCGGCAAAG 59.252 36.000 0.00 0.00 34.02 2.77
741 770 4.441087 GTGTGAGAAAAAGAAACATTCGGC 59.559 41.667 0.00 0.00 34.02 5.54
742 771 4.976116 GGTGTGAGAAAAAGAAACATTCGG 59.024 41.667 0.00 0.00 34.02 4.30
743 772 4.976116 GGGTGTGAGAAAAAGAAACATTCG 59.024 41.667 0.00 0.00 34.02 3.34
744 773 5.901552 TGGGTGTGAGAAAAAGAAACATTC 58.098 37.500 0.00 0.00 0.00 2.67
745 774 5.422012 ACTGGGTGTGAGAAAAAGAAACATT 59.578 36.000 0.00 0.00 0.00 2.71
746 775 4.956075 ACTGGGTGTGAGAAAAAGAAACAT 59.044 37.500 0.00 0.00 0.00 2.71
747 776 4.340617 ACTGGGTGTGAGAAAAAGAAACA 58.659 39.130 0.00 0.00 0.00 2.83
748 777 4.983671 ACTGGGTGTGAGAAAAAGAAAC 57.016 40.909 0.00 0.00 0.00 2.78
749 778 5.993748 AAACTGGGTGTGAGAAAAAGAAA 57.006 34.783 0.00 0.00 0.00 2.52
750 779 5.592688 CCTAAACTGGGTGTGAGAAAAAGAA 59.407 40.000 0.00 0.00 0.00 2.52
751 780 5.130350 CCTAAACTGGGTGTGAGAAAAAGA 58.870 41.667 0.00 0.00 0.00 2.52
752 781 4.887655 ACCTAAACTGGGTGTGAGAAAAAG 59.112 41.667 0.00 0.00 35.51 2.27
758 787 1.337823 CCGACCTAAACTGGGTGTGAG 60.338 57.143 0.00 0.00 37.17 3.51
759 788 0.682852 CCGACCTAAACTGGGTGTGA 59.317 55.000 0.00 0.00 37.17 3.58
764 793 1.165270 CAAAGCCGACCTAAACTGGG 58.835 55.000 0.00 0.00 0.00 4.45
766 795 0.521735 GGCAAAGCCGACCTAAACTG 59.478 55.000 0.00 0.00 39.62 3.16
767 796 2.942641 GGCAAAGCCGACCTAAACT 58.057 52.632 0.00 0.00 39.62 2.66
796 827 3.395639 TCACATAAACCGAGTGTCAACC 58.604 45.455 0.00 0.00 34.94 3.77
813 844 2.495669 TCTTCGTATCCATGTGCTCACA 59.504 45.455 5.08 5.08 46.44 3.58
817 848 1.759445 AGCTCTTCGTATCCATGTGCT 59.241 47.619 0.00 0.00 0.00 4.40
818 849 2.231215 AGCTCTTCGTATCCATGTGC 57.769 50.000 0.00 0.00 0.00 4.57
819 850 3.312828 GCTAGCTCTTCGTATCCATGTG 58.687 50.000 7.70 0.00 0.00 3.21
820 851 2.297597 GGCTAGCTCTTCGTATCCATGT 59.702 50.000 15.72 0.00 0.00 3.21
821 852 2.297315 TGGCTAGCTCTTCGTATCCATG 59.703 50.000 15.72 0.00 0.00 3.66
822 853 2.598565 TGGCTAGCTCTTCGTATCCAT 58.401 47.619 15.72 0.00 0.00 3.41
824 855 2.288518 CCTTGGCTAGCTCTTCGTATCC 60.289 54.545 15.72 0.00 0.00 2.59
828 940 0.977395 AACCTTGGCTAGCTCTTCGT 59.023 50.000 15.72 2.02 0.00 3.85
870 982 5.357878 ACCGAGGAGTTGACAATATACGTAA 59.642 40.000 0.00 0.00 0.00 3.18
871 983 4.883585 ACCGAGGAGTTGACAATATACGTA 59.116 41.667 0.00 0.00 0.00 3.57
872 984 3.698040 ACCGAGGAGTTGACAATATACGT 59.302 43.478 0.00 0.00 0.00 3.57
873 985 4.303086 ACCGAGGAGTTGACAATATACG 57.697 45.455 0.00 0.00 0.00 3.06
874 986 7.040617 TCAGATACCGAGGAGTTGACAATATAC 60.041 40.741 0.00 0.00 0.00 1.47
875 987 7.002276 TCAGATACCGAGGAGTTGACAATATA 58.998 38.462 0.00 0.00 0.00 0.86
930 1042 2.677836 TCATGGAACGTGAATTAGCAGC 59.322 45.455 0.00 0.00 0.00 5.25
952 1064 9.090692 GCGACTGTATTTATACTAGTTTTGGAA 57.909 33.333 0.00 0.00 34.41 3.53
953 1065 7.707893 GGCGACTGTATTTATACTAGTTTTGGA 59.292 37.037 0.00 0.00 34.41 3.53
955 1067 8.415192 TGGCGACTGTATTTATACTAGTTTTG 57.585 34.615 0.00 1.43 34.41 2.44
956 1068 8.876790 GTTGGCGACTGTATTTATACTAGTTTT 58.123 33.333 0.00 0.00 34.41 2.43
957 1069 8.255905 AGTTGGCGACTGTATTTATACTAGTTT 58.744 33.333 6.59 0.00 37.17 2.66
959 1071 7.067859 TGAGTTGGCGACTGTATTTATACTAGT 59.932 37.037 13.26 0.00 39.19 2.57
960 1072 7.423199 TGAGTTGGCGACTGTATTTATACTAG 58.577 38.462 13.26 0.00 39.19 2.57
961 1073 7.337480 TGAGTTGGCGACTGTATTTATACTA 57.663 36.000 13.26 0.00 39.19 1.82
962 1074 6.216801 TGAGTTGGCGACTGTATTTATACT 57.783 37.500 13.26 0.00 39.19 2.12
1005 1124 1.621317 GCTAGCTAGGGAAGATGGTCC 59.379 57.143 22.10 0.00 36.90 4.46
1006 1125 2.320781 TGCTAGCTAGGGAAGATGGTC 58.679 52.381 22.10 2.10 0.00 4.02
1059 1178 1.660167 GTTCGTATAGGGGTTGTGGC 58.340 55.000 0.00 0.00 0.00 5.01
1153 1272 1.557269 GCTGGGAGATCAGTGGTGGT 61.557 60.000 0.00 0.00 37.12 4.16
1219 1344 3.282745 GAGGAGCGGCGACTTGTCA 62.283 63.158 12.98 0.00 0.00 3.58
1486 1620 2.518349 CCGTTGGTGGTGTTGGCT 60.518 61.111 0.00 0.00 0.00 4.75
1876 2029 4.733371 TCAATGTCGAGCGCGCCA 62.733 61.111 30.33 19.44 37.46 5.69
2011 2164 8.747666 GTTTACGTTGAAAGCATTTAACATGAA 58.252 29.630 9.55 0.00 39.27 2.57
2012 2165 7.380065 GGTTTACGTTGAAAGCATTTAACATGA 59.620 33.333 9.55 0.00 39.27 3.07
2016 2169 6.693978 AGTGGTTTACGTTGAAAGCATTTAAC 59.306 34.615 16.22 5.93 45.56 2.01
2041 2200 1.344438 CAGGAACTCTGTACTGGTGCA 59.656 52.381 0.00 0.00 34.60 4.57
2063 2227 4.019174 CACCCATCATGGAGCTTAGTTTT 58.981 43.478 4.75 0.00 40.96 2.43
2088 2257 1.675310 CCCTCTGCACGCCATTTCA 60.675 57.895 0.00 0.00 0.00 2.69
2214 2405 4.379243 CCGTCGCCCAGCTCAAGT 62.379 66.667 0.00 0.00 0.00 3.16
2259 2454 3.370421 CCACTGGCACCATGTAGTTATCA 60.370 47.826 0.00 0.00 0.00 2.15
2277 2472 1.746615 GCACATCGCACCATCCACT 60.747 57.895 0.00 0.00 41.79 4.00
2286 2481 4.094646 ATCCCCACGCACATCGCA 62.095 61.111 0.00 0.00 42.60 5.10
2430 2626 0.389817 CGGACAATTGGACGCTCAGA 60.390 55.000 10.83 0.00 0.00 3.27
2499 2695 2.035442 GGTGAAGAACGAGCTGGCC 61.035 63.158 0.00 0.00 0.00 5.36
2503 2699 3.134458 CTGAAAAGGTGAAGAACGAGCT 58.866 45.455 0.00 0.00 0.00 4.09
2528 2724 7.352739 CCTGACAAACTCACATACTTTTACAC 58.647 38.462 0.00 0.00 0.00 2.90
2573 2771 6.564125 CGTCCAAGTGAAATTGAAGTGACTAC 60.564 42.308 0.00 0.00 31.55 2.73
2598 2796 6.465084 ACAGATACAGTGAAAGTTCTAACCC 58.535 40.000 0.00 0.00 0.00 4.11
2603 2801 7.148641 CACAGTACAGATACAGTGAAAGTTCT 58.851 38.462 0.00 0.00 46.49 3.01
2618 2816 6.987404 TGTTTATTGCAAGTACACAGTACAGA 59.013 34.615 4.94 0.00 0.00 3.41
2684 2882 7.042321 GGCGATTTACATACAGCTATTGTGTAA 60.042 37.037 10.88 10.88 41.10 2.41
2705 2903 2.270047 CAAATTGCAAATTCGGGCGAT 58.730 42.857 1.71 0.00 35.67 4.58
2741 2939 1.068954 GGCCAACTTGCTTCTTCTTCG 60.069 52.381 0.00 0.00 0.00 3.79
2772 2970 2.939640 GCGGTTGCTCCATCCTTCTTTA 60.940 50.000 0.00 0.00 38.39 1.85
2775 2973 1.078143 GCGGTTGCTCCATCCTTCT 60.078 57.895 0.00 0.00 38.39 2.85
2789 2987 3.426615 CCTAAGATAGATCTCCAGCGGT 58.573 50.000 0.00 0.00 35.76 5.68
2794 2992 3.116746 TGCCACCCTAAGATAGATCTCCA 60.117 47.826 0.00 0.00 35.76 3.86
2818 3016 3.743396 CCTAAGATAGATTGTCGGCAAGC 59.257 47.826 10.58 10.58 40.96 4.01
2823 3021 3.555168 GCCACCCTAAGATAGATTGTCGG 60.555 52.174 0.00 0.00 0.00 4.79
2828 3026 3.718956 AGCTTGCCACCCTAAGATAGATT 59.281 43.478 0.00 0.00 0.00 2.40
2833 3031 0.179000 CGAGCTTGCCACCCTAAGAT 59.821 55.000 0.00 0.00 0.00 2.40
2855 3053 3.641906 CCACACCCCTAAGATAGATCGTT 59.358 47.826 0.00 0.00 0.00 3.85
2879 3077 4.087892 CTGCACTCTCCCCACGGG 62.088 72.222 0.00 0.00 46.11 5.28
2880 3078 4.087892 CCTGCACTCTCCCCACGG 62.088 72.222 0.00 0.00 0.00 4.94
2881 3079 4.767255 GCCTGCACTCTCCCCACG 62.767 72.222 0.00 0.00 0.00 4.94
3596 3794 0.178964 CCACCCAAACCACCTGTCAT 60.179 55.000 0.00 0.00 0.00 3.06
3597 3795 1.228793 CCACCCAAACCACCTGTCA 59.771 57.895 0.00 0.00 0.00 3.58
3598 3796 1.530655 CCCACCCAAACCACCTGTC 60.531 63.158 0.00 0.00 0.00 3.51
3599 3797 2.606449 CCCACCCAAACCACCTGT 59.394 61.111 0.00 0.00 0.00 4.00
3600 3798 2.203625 CCCCACCCAAACCACCTG 60.204 66.667 0.00 0.00 0.00 4.00
3601 3799 2.015726 TTCCCCACCCAAACCACCT 61.016 57.895 0.00 0.00 0.00 4.00
3602 3800 1.533033 CTTCCCCACCCAAACCACC 60.533 63.158 0.00 0.00 0.00 4.61
3603 3801 0.105913 TTCTTCCCCACCCAAACCAC 60.106 55.000 0.00 0.00 0.00 4.16
3604 3802 0.187361 CTTCTTCCCCACCCAAACCA 59.813 55.000 0.00 0.00 0.00 3.67
3605 3803 0.481128 TCTTCTTCCCCACCCAAACC 59.519 55.000 0.00 0.00 0.00 3.27
3606 3804 2.171003 CATCTTCTTCCCCACCCAAAC 58.829 52.381 0.00 0.00 0.00 2.93
3607 3805 1.549950 GCATCTTCTTCCCCACCCAAA 60.550 52.381 0.00 0.00 0.00 3.28
3608 3806 0.039618 GCATCTTCTTCCCCACCCAA 59.960 55.000 0.00 0.00 0.00 4.12
3609 3807 1.139498 TGCATCTTCTTCCCCACCCA 61.139 55.000 0.00 0.00 0.00 4.51
3610 3808 0.681243 GTGCATCTTCTTCCCCACCC 60.681 60.000 0.00 0.00 0.00 4.61
3611 3809 0.038166 TGTGCATCTTCTTCCCCACC 59.962 55.000 0.00 0.00 0.00 4.61
3612 3810 1.747355 CATGTGCATCTTCTTCCCCAC 59.253 52.381 0.00 0.00 0.00 4.61
3613 3811 1.634973 TCATGTGCATCTTCTTCCCCA 59.365 47.619 0.00 0.00 0.00 4.96
3614 3812 2.019984 GTCATGTGCATCTTCTTCCCC 58.980 52.381 0.00 0.00 0.00 4.81
3615 3813 2.715046 TGTCATGTGCATCTTCTTCCC 58.285 47.619 0.00 0.00 0.00 3.97
3616 3814 4.548991 GATGTCATGTGCATCTTCTTCC 57.451 45.455 18.74 0.52 39.53 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.