Multiple sequence alignment - TraesCS3A01G471600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G471600 chr3A 100.000 2376 0 0 1 2376 703137679 703140054 0.000000e+00 4388.0
1 TraesCS3A01G471600 chr3A 94.398 482 23 3 1897 2376 703165338 703165817 0.000000e+00 737.0
2 TraesCS3A01G471600 chr3A 95.789 285 10 1 1614 1896 426681945 426681661 2.150000e-125 459.0
3 TraesCS3A01G471600 chr7B 87.276 1619 194 7 2 1611 221805617 221804002 0.000000e+00 1838.0
4 TraesCS3A01G471600 chr7B 85.616 584 70 12 1614 2192 136489592 136489018 3.380000e-168 601.0
5 TraesCS3A01G471600 chr7B 74.783 230 52 6 167 393 748363652 748363878 5.400000e-17 99.0
6 TraesCS3A01G471600 chr6B 87.975 1289 152 2 323 1611 64444908 64446193 0.000000e+00 1519.0
7 TraesCS3A01G471600 chr6B 92.523 321 24 0 1 321 64442945 64443265 5.980000e-126 460.0
8 TraesCS3A01G471600 chr5A 95.218 481 20 3 1897 2376 132381454 132380976 0.000000e+00 758.0
9 TraesCS3A01G471600 chr5A 96.194 289 10 1 1609 1896 538502980 538503268 2.760000e-129 472.0
10 TraesCS3A01G471600 chr1A 94.792 480 25 0 1897 2376 105974610 105975089 0.000000e+00 749.0
11 TraesCS3A01G471600 chr1A 94.387 481 26 1 1897 2376 119436249 119435769 0.000000e+00 737.0
12 TraesCS3A01G471600 chr1A 94.539 293 15 1 1604 1896 71885183 71885474 3.600000e-123 451.0
13 TraesCS3A01G471600 chr1A 95.423 284 12 1 1614 1896 350038974 350039257 3.600000e-123 451.0
14 TraesCS3A01G471600 chr4A 94.792 480 24 1 1897 2376 118730169 118730647 0.000000e+00 747.0
15 TraesCS3A01G471600 chr4A 94.456 487 24 3 1892 2376 471539441 471539926 0.000000e+00 747.0
16 TraesCS3A01G471600 chr4A 94.583 480 25 1 1897 2376 471562507 471562985 0.000000e+00 741.0
17 TraesCS3A01G471600 chr4A 96.127 284 10 1 1614 1896 521511516 521511233 1.660000e-126 462.0
18 TraesCS3A01G471600 chr6A 94.583 480 26 0 1897 2376 28859915 28860394 0.000000e+00 743.0
19 TraesCS3A01G471600 chr6A 84.720 589 77 10 1614 2192 514453286 514453871 5.690000e-161 577.0
20 TraesCS3A01G471600 chr2A 94.410 483 26 1 1895 2376 501903826 501903344 0.000000e+00 741.0
21 TraesCS3A01G471600 chr2A 96.466 283 9 1 1614 1896 555482936 555483217 1.290000e-127 466.0
22 TraesCS3A01G471600 chr2A 85.965 57 6 2 491 546 262156923 262156868 2.550000e-05 60.2
23 TraesCS3A01G471600 chr7A 95.760 283 12 0 1614 1896 99793249 99792967 7.740000e-125 457.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G471600 chr3A 703137679 703140054 2375 False 4388.0 4388 100.000 1 2376 1 chr3A.!!$F1 2375
1 TraesCS3A01G471600 chr7B 221804002 221805617 1615 True 1838.0 1838 87.276 2 1611 1 chr7B.!!$R2 1609
2 TraesCS3A01G471600 chr7B 136489018 136489592 574 True 601.0 601 85.616 1614 2192 1 chr7B.!!$R1 578
3 TraesCS3A01G471600 chr6B 64442945 64446193 3248 False 989.5 1519 90.249 1 1611 2 chr6B.!!$F1 1610
4 TraesCS3A01G471600 chr6A 514453286 514453871 585 False 577.0 577 84.720 1614 2192 1 chr6A.!!$F2 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 2195 0.041312 AGCACGTTGAACATGTTCGC 60.041 50.0 28.55 24.5 42.28 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 3924 0.108804 CGACGGGCAGAAGAGCTAAA 60.109 55.0 0.0 0.0 34.17 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 3.152341 ACAGAAATTGAGAGGCAGGTTG 58.848 45.455 0.00 0.00 0.00 3.77
118 119 4.410228 AGGTTGAAGAGCTATTGGATGCTA 59.590 41.667 0.00 0.00 39.91 3.49
208 210 2.290008 TGGCGATTGTGTGTGGATTACT 60.290 45.455 0.00 0.00 0.00 2.24
221 223 4.285775 TGTGGATTACTGTCACCTCAATGA 59.714 41.667 0.00 0.00 0.00 2.57
255 257 3.203716 GAACAAATACCCAGTCCCGATC 58.796 50.000 0.00 0.00 0.00 3.69
261 263 1.364171 CCCAGTCCCGATCATCGAC 59.636 63.158 9.16 0.00 43.74 4.20
314 316 2.476241 GGTTTTCCAAGCTTGATTTGCG 59.524 45.455 28.05 9.83 40.31 4.85
321 323 2.976840 GCTTGATTTGCGTGCGGGA 61.977 57.895 0.00 0.00 0.00 5.14
348 1991 0.753111 AAATCCGAATGGCAGAGGGC 60.753 55.000 0.00 0.00 43.74 5.19
357 2000 1.834822 GGCAGAGGGCGAGGAGTAT 60.835 63.158 0.00 0.00 46.16 2.12
365 2008 1.215244 GGCGAGGAGTATAAAACCGC 58.785 55.000 0.00 0.00 40.33 5.68
366 2009 1.472026 GGCGAGGAGTATAAAACCGCA 60.472 52.381 0.00 0.00 42.48 5.69
422 2065 2.361104 GGCATTTGGAGTGGCCGA 60.361 61.111 0.00 0.00 40.66 5.54
462 2105 1.463674 GGGCCATGACCACTACTTTG 58.536 55.000 4.39 0.00 0.00 2.77
465 2108 1.885887 GCCATGACCACTACTTTGCAA 59.114 47.619 0.00 0.00 0.00 4.08
477 2120 3.213206 ACTTTGCAACCACTGATCAGA 57.787 42.857 29.27 1.44 0.00 3.27
482 2125 4.508461 TGCAACCACTGATCAGAATTTG 57.492 40.909 29.27 24.03 0.00 2.32
486 2129 5.217393 CAACCACTGATCAGAATTTGTGTG 58.783 41.667 29.27 14.22 0.00 3.82
501 2144 1.269569 TGTGTGCTCGTGTTCTTCGAT 60.270 47.619 0.00 0.00 36.73 3.59
552 2195 0.041312 AGCACGTTGAACATGTTCGC 60.041 50.000 28.55 24.50 42.28 4.70
562 2205 0.108585 ACATGTTCGCCAGGTTCTGT 59.891 50.000 0.00 0.00 33.45 3.41
603 2246 0.313672 GGCGTGTCAAGCAATCCAAA 59.686 50.000 12.89 0.00 36.08 3.28
669 2312 0.894184 ACACATCCGACGTCTCCACT 60.894 55.000 14.70 0.00 0.00 4.00
687 2330 3.118112 CCACTGACCCTAGCAAGATTGAT 60.118 47.826 0.00 0.00 0.00 2.57
688 2331 3.875727 CACTGACCCTAGCAAGATTGATG 59.124 47.826 0.00 0.00 0.00 3.07
709 2352 2.094545 GCAATCAAGAACTGGCCGAAAT 60.095 45.455 0.00 0.00 0.00 2.17
732 2375 4.523173 TCTCTGAATGTGAAGGAAGTACGT 59.477 41.667 0.00 0.00 0.00 3.57
736 2379 4.021807 TGAATGTGAAGGAAGTACGTAGCA 60.022 41.667 0.00 0.00 0.00 3.49
745 2388 3.445857 GAAGTACGTAGCATCTTGGGAC 58.554 50.000 0.00 0.00 0.00 4.46
748 2391 4.471548 AGTACGTAGCATCTTGGGACTAT 58.528 43.478 0.00 0.00 0.00 2.12
751 2394 3.704566 ACGTAGCATCTTGGGACTATCAA 59.295 43.478 0.00 0.00 0.00 2.57
768 2411 6.047231 ACTATCAAGGTATTACCGCAAGTTC 58.953 40.000 7.21 0.00 44.90 3.01
792 2435 2.617308 CAAGCATTTCAGGATCATCGCT 59.383 45.455 0.00 0.00 0.00 4.93
813 2456 5.049612 CGCTCGACCACTATTCAATCTACTA 60.050 44.000 0.00 0.00 0.00 1.82
885 2528 0.530744 TACTCAAGCACGGCCTAGTG 59.469 55.000 0.00 3.38 44.47 2.74
938 2581 4.728772 TCCAAGACCTTTGTGATTGACAT 58.271 39.130 0.00 0.00 33.40 3.06
954 2597 2.549329 TGACATGGATGCATGCGATTAC 59.451 45.455 25.32 11.27 36.08 1.89
1203 2846 5.045140 ACAGAAGGCCTTTACCAAGCTATTA 60.045 40.000 21.54 0.00 0.00 0.98
1242 2891 0.036875 GCTACAGGCAAGGGACAACT 59.963 55.000 0.00 0.00 41.35 3.16
1251 2900 1.531149 CAAGGGACAACTAACAGTGCG 59.469 52.381 0.00 0.00 0.00 5.34
1254 2903 0.602905 GGACAACTAACAGTGCGGCT 60.603 55.000 0.00 0.00 0.00 5.52
1268 2917 2.046892 GGCTGGCGCTCTTTCTCA 60.047 61.111 7.64 0.00 36.09 3.27
1275 2924 2.720758 CGCTCTTTCTCACCGCGTG 61.721 63.158 4.92 3.64 39.07 5.34
1279 2928 0.245266 TCTTTCTCACCGCGTGCATA 59.755 50.000 4.92 0.00 32.98 3.14
1283 2932 0.527600 TCTCACCGCGTGCATATGAC 60.528 55.000 6.97 1.18 32.98 3.06
1287 2936 0.108377 ACCGCGTGCATATGACAGAA 60.108 50.000 6.97 0.00 0.00 3.02
1291 2940 2.535534 CGCGTGCATATGACAGAACAAG 60.536 50.000 6.97 0.00 0.00 3.16
1294 2943 4.271049 GCGTGCATATGACAGAACAAGTAT 59.729 41.667 6.97 0.00 0.00 2.12
1298 2947 6.018425 GTGCATATGACAGAACAAGTATCAGG 60.018 42.308 6.97 0.00 0.00 3.86
1320 2969 3.279434 AGTTTCTGTCTGTCAACCAACC 58.721 45.455 0.00 0.00 0.00 3.77
1323 2972 1.837439 TCTGTCTGTCAACCAACCTGT 59.163 47.619 0.00 0.00 0.00 4.00
1329 2978 4.452455 GTCTGTCAACCAACCTGTATTGAG 59.548 45.833 0.00 0.00 31.94 3.02
1335 2984 6.828785 GTCAACCAACCTGTATTGAGGATATT 59.171 38.462 0.00 0.00 36.51 1.28
1341 2990 3.579709 CTGTATTGAGGATATTCGCGCT 58.420 45.455 5.56 0.00 0.00 5.92
1344 2993 3.944055 ATTGAGGATATTCGCGCTAGT 57.056 42.857 5.56 0.00 0.00 2.57
1347 2996 4.156664 TGAGGATATTCGCGCTAGTTAC 57.843 45.455 5.56 0.00 0.00 2.50
1349 2998 2.810274 AGGATATTCGCGCTAGTTACGA 59.190 45.455 5.56 0.00 0.00 3.43
1360 3009 3.730963 CGCTAGTTACGACAGCAATGAGA 60.731 47.826 0.00 0.00 32.79 3.27
1368 3017 3.496130 ACGACAGCAATGAGAAAGTTCAG 59.504 43.478 0.00 0.00 0.00 3.02
1370 3019 4.212004 CGACAGCAATGAGAAAGTTCAGAA 59.788 41.667 0.00 0.00 0.00 3.02
1375 3024 7.663081 ACAGCAATGAGAAAGTTCAGAAGATAA 59.337 33.333 0.00 0.00 0.00 1.75
1383 3032 7.322664 AGAAAGTTCAGAAGATAAGAGAGCAG 58.677 38.462 0.00 0.00 0.00 4.24
1384 3033 6.603940 AAGTTCAGAAGATAAGAGAGCAGT 57.396 37.500 0.00 0.00 0.00 4.40
1387 3036 5.991933 TCAGAAGATAAGAGAGCAGTTGT 57.008 39.130 0.00 0.00 0.00 3.32
1404 3053 1.296715 GTGCCAACGTCCTGATCCT 59.703 57.895 0.00 0.00 0.00 3.24
1407 3056 1.207089 TGCCAACGTCCTGATCCTAAG 59.793 52.381 0.00 0.00 0.00 2.18
1410 3059 1.139058 CAACGTCCTGATCCTAAGGGG 59.861 57.143 0.00 0.00 35.35 4.79
1413 3062 1.049289 GTCCTGATCCTAAGGGGCGT 61.049 60.000 0.00 0.00 35.35 5.68
1425 3074 2.265904 GGGGCGTTTCACTTGGTCC 61.266 63.158 0.00 0.00 0.00 4.46
1428 3077 2.613506 GCGTTTCACTTGGTCCGGG 61.614 63.158 0.00 0.00 0.00 5.73
1431 3080 0.037734 GTTTCACTTGGTCCGGGGAT 59.962 55.000 0.00 0.00 0.00 3.85
1434 3083 0.546747 TCACTTGGTCCGGGGATCTT 60.547 55.000 0.00 0.00 0.00 2.40
1437 3086 1.007963 ACTTGGTCCGGGGATCTTCTA 59.992 52.381 0.00 0.00 0.00 2.10
1445 3094 5.489249 GTCCGGGGATCTTCTATATTTTCC 58.511 45.833 0.00 0.00 0.00 3.13
1452 3101 7.421382 GGGGATCTTCTATATTTTCCCAACAGA 60.421 40.741 8.00 0.00 43.84 3.41
1464 3113 1.683011 CCCAACAGATTGTGGCTAGGG 60.683 57.143 0.00 0.00 33.60 3.53
1470 3119 2.666596 GATTGTGGCTAGGGGGCTCG 62.667 65.000 0.00 0.00 41.48 5.03
1516 3165 5.069318 TCAAAGCATTCCATGACAGTACAA 58.931 37.500 0.00 0.00 0.00 2.41
1518 3167 6.883756 TCAAAGCATTCCATGACAGTACAATA 59.116 34.615 0.00 0.00 0.00 1.90
1522 3171 5.237344 GCATTCCATGACAGTACAATAGGAC 59.763 44.000 0.00 0.00 0.00 3.85
1524 3173 4.274978 TCCATGACAGTACAATAGGACGA 58.725 43.478 0.00 0.00 0.00 4.20
1527 3176 4.430137 TGACAGTACAATAGGACGACAC 57.570 45.455 0.00 0.00 0.00 3.67
1530 3179 3.442977 ACAGTACAATAGGACGACACTCC 59.557 47.826 0.00 0.00 0.00 3.85
1536 3185 1.843368 TAGGACGACACTCCGGATTT 58.157 50.000 3.57 0.00 35.20 2.17
1550 3199 1.553248 CGGATTTCCAGTGACCTACCA 59.447 52.381 0.00 0.00 35.14 3.25
1551 3200 2.170607 CGGATTTCCAGTGACCTACCAT 59.829 50.000 0.00 0.00 35.14 3.55
1560 3209 2.838225 ACCTACCATCGCCTCCGG 60.838 66.667 0.00 0.00 34.56 5.14
1577 3226 3.124686 GCGTTTGTTTGCCTGGGA 58.875 55.556 0.00 0.00 0.00 4.37
1590 3239 4.051661 TGCCTGGGAAAAGATGAAAGAT 57.948 40.909 0.00 0.00 0.00 2.40
1593 3242 4.221482 GCCTGGGAAAAGATGAAAGATTGT 59.779 41.667 0.00 0.00 0.00 2.71
1599 3248 9.087871 TGGGAAAAGATGAAAGATTGTATCAAA 57.912 29.630 0.00 0.00 0.00 2.69
1611 3260 9.630098 AAAGATTGTATCAAAAACTATGTGCAG 57.370 29.630 0.00 0.00 0.00 4.41
1612 3261 8.565896 AGATTGTATCAAAAACTATGTGCAGA 57.434 30.769 0.00 0.00 0.00 4.26
1663 3312 7.846644 TTTTGATTGTTCCATGCCAATATTC 57.153 32.000 4.18 0.00 31.67 1.75
1665 3314 7.894753 TTGATTGTTCCATGCCAATATTCTA 57.105 32.000 4.18 0.00 31.67 2.10
1666 3315 8.481492 TTGATTGTTCCATGCCAATATTCTAT 57.519 30.769 4.18 0.00 31.67 1.98
1752 3401 2.166254 CAGTGCCAGTTCCTGTTTGTTT 59.834 45.455 0.00 0.00 0.00 2.83
1788 3437 8.455682 TGTTTCGTAGAAAATCCATATCAAACC 58.544 33.333 0.00 0.00 45.90 3.27
1816 3465 1.441738 ACGGAATAAAAACGGACGGG 58.558 50.000 0.00 0.00 0.00 5.28
1819 3468 1.739466 GGAATAAAAACGGACGGGGAC 59.261 52.381 0.00 0.00 0.00 4.46
1850 3500 8.837099 TGGAATATATGTGAATTTTGGGAAGT 57.163 30.769 0.00 0.00 0.00 3.01
1851 3501 8.694540 TGGAATATATGTGAATTTTGGGAAGTG 58.305 33.333 0.00 0.00 0.00 3.16
1852 3502 8.912988 GGAATATATGTGAATTTTGGGAAGTGA 58.087 33.333 0.00 0.00 0.00 3.41
1935 3593 3.116862 TGACAGTAGAATAGGGGGTAGGG 60.117 52.174 0.00 0.00 0.00 3.53
1939 3597 3.738703 AGTAGAATAGGGGGTAGGGATGT 59.261 47.826 0.00 0.00 0.00 3.06
1961 3619 6.071320 TGTAGAGGCAAGATCTTAGCTATGA 58.929 40.000 21.34 11.39 0.00 2.15
1962 3620 5.467035 AGAGGCAAGATCTTAGCTATGAC 57.533 43.478 21.34 8.30 0.00 3.06
1964 3622 3.006323 AGGCAAGATCTTAGCTATGACGG 59.994 47.826 21.34 3.64 0.00 4.79
1980 3640 1.789078 ACGGAGTTGTACACGCGAGT 61.789 55.000 15.93 15.30 44.36 4.18
2003 3663 0.832135 ACGAGTTCAGGCCCTTCTCA 60.832 55.000 0.00 0.00 0.00 3.27
2056 3716 3.228453 GGAGGTGGTCGACTGGATTATA 58.772 50.000 16.46 0.00 0.00 0.98
2059 3719 3.006967 AGGTGGTCGACTGGATTATATGC 59.993 47.826 16.46 0.00 0.00 3.14
2062 3722 2.987149 GGTCGACTGGATTATATGCGTG 59.013 50.000 16.46 0.00 0.00 5.34
2073 3733 6.036626 TGGATTATATGCGTGTGTGTTACAAG 59.963 38.462 0.00 0.00 41.89 3.16
2075 3735 1.234821 ATGCGTGTGTGTTACAAGGG 58.765 50.000 0.00 0.00 41.89 3.95
2098 3758 1.481056 CGAACCCTTGTCCCTGAGGT 61.481 60.000 0.00 0.00 0.00 3.85
2119 3780 3.651423 GTGGGGGTGGCTTATATAGAGTT 59.349 47.826 0.00 0.00 0.00 3.01
2131 3793 0.032017 ATAGAGTTCGCCAGACCCCT 60.032 55.000 0.00 0.00 0.00 4.79
2132 3794 0.683504 TAGAGTTCGCCAGACCCCTC 60.684 60.000 0.00 0.00 0.00 4.30
2133 3795 1.985116 GAGTTCGCCAGACCCCTCT 60.985 63.158 0.00 0.00 0.00 3.69
2135 3797 3.068691 TTCGCCAGACCCCTCTCG 61.069 66.667 0.00 0.00 0.00 4.04
2139 3801 4.787280 CCAGACCCCTCTCGGCCT 62.787 72.222 0.00 0.00 0.00 5.19
2140 3802 3.151022 CAGACCCCTCTCGGCCTC 61.151 72.222 0.00 0.00 0.00 4.70
2141 3803 4.824515 AGACCCCTCTCGGCCTCG 62.825 72.222 0.00 0.00 37.82 4.63
2171 3833 9.020731 ACAAAGGGTTTAAGGTACATAAAGATG 57.979 33.333 0.00 0.00 31.99 2.90
2173 3835 7.519347 AGGGTTTAAGGTACATAAAGATGGA 57.481 36.000 0.00 0.00 37.39 3.41
2175 3837 7.404980 AGGGTTTAAGGTACATAAAGATGGAGA 59.595 37.037 0.00 0.00 37.39 3.71
2200 3862 6.579491 GTTACTGGTAACGCCTGTATTTAG 57.421 41.667 7.70 0.00 46.49 1.85
2201 3863 4.133013 ACTGGTAACGCCTGTATTTAGG 57.867 45.455 0.00 0.00 45.90 2.69
2202 3864 3.516700 ACTGGTAACGCCTGTATTTAGGT 59.483 43.478 0.00 0.00 45.90 3.08
2212 3874 6.831769 CGCCTGTATTTAGGTGCTATAAATG 58.168 40.000 9.97 0.00 41.05 2.32
2213 3875 6.649141 CGCCTGTATTTAGGTGCTATAAATGA 59.351 38.462 9.97 0.39 41.05 2.57
2214 3876 7.360101 CGCCTGTATTTAGGTGCTATAAATGAC 60.360 40.741 9.97 6.59 41.05 3.06
2215 3877 7.444183 GCCTGTATTTAGGTGCTATAAATGACA 59.556 37.037 9.97 9.23 40.11 3.58
2216 3878 9.337396 CCTGTATTTAGGTGCTATAAATGACAA 57.663 33.333 9.97 0.00 35.17 3.18
2223 3885 7.277174 AGGTGCTATAAATGACAATTAAGCC 57.723 36.000 11.55 0.00 30.62 4.35
2224 3886 7.062957 AGGTGCTATAAATGACAATTAAGCCT 58.937 34.615 11.55 0.00 30.62 4.58
2225 3887 8.217799 AGGTGCTATAAATGACAATTAAGCCTA 58.782 33.333 11.55 0.00 30.62 3.93
2226 3888 8.290325 GGTGCTATAAATGACAATTAAGCCTAC 58.710 37.037 11.55 6.93 30.62 3.18
2227 3889 8.836413 GTGCTATAAATGACAATTAAGCCTACA 58.164 33.333 11.55 0.00 30.62 2.74
2228 3890 9.402320 TGCTATAAATGACAATTAAGCCTACAA 57.598 29.630 11.55 0.00 30.62 2.41
2229 3891 9.884465 GCTATAAATGACAATTAAGCCTACAAG 57.116 33.333 6.34 0.00 0.00 3.16
2236 3898 7.535139 TGACAATTAAGCCTACAAGTAAATGC 58.465 34.615 0.00 0.00 0.00 3.56
2237 3899 7.393234 TGACAATTAAGCCTACAAGTAAATGCT 59.607 33.333 0.00 0.00 0.00 3.79
2238 3900 7.762382 ACAATTAAGCCTACAAGTAAATGCTC 58.238 34.615 0.00 0.00 0.00 4.26
2239 3901 6.604735 ATTAAGCCTACAAGTAAATGCTCG 57.395 37.500 0.00 0.00 0.00 5.03
2240 3902 3.887621 AGCCTACAAGTAAATGCTCGA 57.112 42.857 0.00 0.00 0.00 4.04
2241 3903 3.522553 AGCCTACAAGTAAATGCTCGAC 58.477 45.455 0.00 0.00 0.00 4.20
2242 3904 2.608090 GCCTACAAGTAAATGCTCGACC 59.392 50.000 0.00 0.00 0.00 4.79
2243 3905 2.858344 CCTACAAGTAAATGCTCGACCG 59.142 50.000 0.00 0.00 0.00 4.79
2244 3906 2.450609 ACAAGTAAATGCTCGACCGT 57.549 45.000 0.00 0.00 0.00 4.83
2245 3907 2.762745 ACAAGTAAATGCTCGACCGTT 58.237 42.857 0.00 0.00 0.00 4.44
2246 3908 3.916761 ACAAGTAAATGCTCGACCGTTA 58.083 40.909 0.00 0.00 0.00 3.18
2247 3909 4.501071 ACAAGTAAATGCTCGACCGTTAT 58.499 39.130 0.00 0.00 0.00 1.89
2248 3910 4.933400 ACAAGTAAATGCTCGACCGTTATT 59.067 37.500 0.00 0.00 0.00 1.40
2249 3911 5.063060 ACAAGTAAATGCTCGACCGTTATTC 59.937 40.000 0.00 0.00 0.00 1.75
2250 3912 3.795101 AGTAAATGCTCGACCGTTATTCG 59.205 43.478 0.00 0.00 37.85 3.34
2251 3913 2.288961 AATGCTCGACCGTTATTCGT 57.711 45.000 0.00 0.00 37.73 3.85
2252 3914 1.556564 ATGCTCGACCGTTATTCGTG 58.443 50.000 0.00 0.00 37.73 4.35
2253 3915 1.629504 GCTCGACCGTTATTCGTGC 59.370 57.895 3.43 3.43 45.32 5.34
2254 3916 3.024423 CTCGACCGTTATTCGTGCA 57.976 52.632 0.00 0.00 37.73 4.57
2255 3917 0.914551 CTCGACCGTTATTCGTGCAG 59.085 55.000 0.00 0.00 37.73 4.41
2256 3918 0.522626 TCGACCGTTATTCGTGCAGA 59.477 50.000 0.00 0.00 37.73 4.26
2257 3919 0.914551 CGACCGTTATTCGTGCAGAG 59.085 55.000 0.00 0.00 37.94 3.35
2258 3920 1.731424 CGACCGTTATTCGTGCAGAGT 60.731 52.381 0.00 0.00 37.94 3.24
2259 3921 1.654105 GACCGTTATTCGTGCAGAGTG 59.346 52.381 0.00 0.00 37.94 3.51
2260 3922 1.271379 ACCGTTATTCGTGCAGAGTGA 59.729 47.619 0.00 0.00 37.94 3.41
2261 3923 1.654105 CCGTTATTCGTGCAGAGTGAC 59.346 52.381 0.00 0.00 37.94 3.67
2262 3924 2.596452 CGTTATTCGTGCAGAGTGACT 58.404 47.619 0.00 0.00 34.52 3.41
2263 3925 2.987149 CGTTATTCGTGCAGAGTGACTT 59.013 45.455 0.00 0.00 34.52 3.01
2264 3926 3.428870 CGTTATTCGTGCAGAGTGACTTT 59.571 43.478 0.00 0.00 34.52 2.66
2265 3927 4.619760 CGTTATTCGTGCAGAGTGACTTTA 59.380 41.667 0.00 0.00 34.52 1.85
2266 3928 5.220043 CGTTATTCGTGCAGAGTGACTTTAG 60.220 44.000 0.00 0.00 34.52 1.85
2267 3929 2.065993 TCGTGCAGAGTGACTTTAGC 57.934 50.000 0.00 0.00 0.00 3.09
2268 3930 1.613925 TCGTGCAGAGTGACTTTAGCT 59.386 47.619 0.00 0.00 0.00 3.32
2269 3931 1.989165 CGTGCAGAGTGACTTTAGCTC 59.011 52.381 0.00 2.83 0.00 4.09
2270 3932 2.352225 CGTGCAGAGTGACTTTAGCTCT 60.352 50.000 0.00 0.00 39.89 4.09
2271 3933 3.658709 GTGCAGAGTGACTTTAGCTCTT 58.341 45.455 0.00 0.00 37.48 2.85
2272 3934 3.677596 GTGCAGAGTGACTTTAGCTCTTC 59.322 47.826 0.00 0.00 37.48 2.87
2273 3935 3.576118 TGCAGAGTGACTTTAGCTCTTCT 59.424 43.478 0.00 0.00 37.48 2.85
2274 3936 3.925913 GCAGAGTGACTTTAGCTCTTCTG 59.074 47.826 0.00 0.00 37.48 3.02
2275 3937 3.925913 CAGAGTGACTTTAGCTCTTCTGC 59.074 47.826 0.00 0.00 37.48 4.26
2276 3938 3.056179 AGAGTGACTTTAGCTCTTCTGCC 60.056 47.826 0.00 0.00 36.30 4.85
2277 3939 2.027653 AGTGACTTTAGCTCTTCTGCCC 60.028 50.000 0.00 0.00 0.00 5.36
2278 3940 1.066858 TGACTTTAGCTCTTCTGCCCG 60.067 52.381 0.00 0.00 0.00 6.13
2279 3941 0.977395 ACTTTAGCTCTTCTGCCCGT 59.023 50.000 0.00 0.00 0.00 5.28
2280 3942 1.066787 ACTTTAGCTCTTCTGCCCGTC 60.067 52.381 0.00 0.00 0.00 4.79
2281 3943 0.108804 TTTAGCTCTTCTGCCCGTCG 60.109 55.000 0.00 0.00 0.00 5.12
2282 3944 0.963856 TTAGCTCTTCTGCCCGTCGA 60.964 55.000 0.00 0.00 0.00 4.20
2283 3945 1.377366 TAGCTCTTCTGCCCGTCGAG 61.377 60.000 0.00 0.00 0.00 4.04
2284 3946 2.995872 GCTCTTCTGCCCGTCGAGT 61.996 63.158 0.00 0.00 0.00 4.18
2285 3947 1.153939 CTCTTCTGCCCGTCGAGTG 60.154 63.158 0.00 0.00 0.00 3.51
2286 3948 2.125912 CTTCTGCCCGTCGAGTGG 60.126 66.667 0.00 0.00 0.00 4.00
2291 3953 2.668550 GCCCGTCGAGTGGCTTTT 60.669 61.111 16.06 0.00 44.46 2.27
2292 3954 2.966309 GCCCGTCGAGTGGCTTTTG 61.966 63.158 16.06 0.00 44.46 2.44
2293 3955 2.556287 CCGTCGAGTGGCTTTTGC 59.444 61.111 0.00 0.00 46.64 3.68
2305 3967 2.212922 GCTTTTGCGACGTTAGAGTG 57.787 50.000 0.00 0.00 34.86 3.51
2306 3968 1.790623 GCTTTTGCGACGTTAGAGTGA 59.209 47.619 0.00 0.00 34.86 3.41
2307 3969 2.409879 GCTTTTGCGACGTTAGAGTGAC 60.410 50.000 0.00 0.00 34.86 3.67
2308 3970 2.495409 TTTGCGACGTTAGAGTGACA 57.505 45.000 0.00 0.00 0.00 3.58
2309 3971 2.717580 TTGCGACGTTAGAGTGACAT 57.282 45.000 0.00 0.00 0.00 3.06
2310 3972 2.717580 TGCGACGTTAGAGTGACATT 57.282 45.000 0.00 0.00 0.00 2.71
2311 3973 2.324860 TGCGACGTTAGAGTGACATTG 58.675 47.619 0.00 0.00 0.00 2.82
2312 3974 2.030628 TGCGACGTTAGAGTGACATTGA 60.031 45.455 0.00 0.00 0.00 2.57
2313 3975 3.179830 GCGACGTTAGAGTGACATTGAT 58.820 45.455 0.00 0.00 0.00 2.57
2314 3976 3.612860 GCGACGTTAGAGTGACATTGATT 59.387 43.478 0.00 0.00 0.00 2.57
2315 3977 4.259451 GCGACGTTAGAGTGACATTGATTC 60.259 45.833 0.00 0.00 0.00 2.52
2316 3978 5.096169 CGACGTTAGAGTGACATTGATTCT 58.904 41.667 0.00 0.00 0.00 2.40
2317 3979 5.573282 CGACGTTAGAGTGACATTGATTCTT 59.427 40.000 0.00 0.00 0.00 2.52
2318 3980 6.237332 CGACGTTAGAGTGACATTGATTCTTC 60.237 42.308 0.00 0.00 0.00 2.87
2319 3981 6.692486 ACGTTAGAGTGACATTGATTCTTCT 58.308 36.000 0.00 0.00 0.00 2.85
2320 3982 6.587990 ACGTTAGAGTGACATTGATTCTTCTG 59.412 38.462 0.00 0.00 0.00 3.02
2321 3983 6.808704 CGTTAGAGTGACATTGATTCTTCTGA 59.191 38.462 0.00 0.00 0.00 3.27
2322 3984 7.009083 CGTTAGAGTGACATTGATTCTTCTGAG 59.991 40.741 0.00 0.00 0.00 3.35
2323 3985 6.357579 AGAGTGACATTGATTCTTCTGAGT 57.642 37.500 0.00 0.00 0.00 3.41
2324 3986 6.164876 AGAGTGACATTGATTCTTCTGAGTG 58.835 40.000 0.00 0.00 0.00 3.51
2325 3987 5.243981 AGTGACATTGATTCTTCTGAGTGG 58.756 41.667 0.00 0.00 0.00 4.00
2326 3988 5.012458 AGTGACATTGATTCTTCTGAGTGGA 59.988 40.000 0.00 0.00 0.00 4.02
2327 3989 5.702670 GTGACATTGATTCTTCTGAGTGGAA 59.297 40.000 0.00 0.00 0.00 3.53
2328 3990 5.702670 TGACATTGATTCTTCTGAGTGGAAC 59.297 40.000 0.00 0.00 0.00 3.62
2329 3991 4.692625 ACATTGATTCTTCTGAGTGGAACG 59.307 41.667 0.00 0.00 45.86 3.95
2330 3992 4.336889 TTGATTCTTCTGAGTGGAACGT 57.663 40.909 0.00 0.00 45.86 3.99
2331 3993 3.914312 TGATTCTTCTGAGTGGAACGTC 58.086 45.455 0.00 0.00 45.86 4.34
2332 3994 3.574396 TGATTCTTCTGAGTGGAACGTCT 59.426 43.478 0.00 0.00 45.86 4.18
2333 3995 4.765339 TGATTCTTCTGAGTGGAACGTCTA 59.235 41.667 0.00 0.00 45.86 2.59
2334 3996 5.419155 TGATTCTTCTGAGTGGAACGTCTAT 59.581 40.000 0.00 0.00 45.86 1.98
2335 3997 4.703645 TCTTCTGAGTGGAACGTCTATG 57.296 45.455 0.00 0.00 45.86 2.23
2336 3998 3.444034 TCTTCTGAGTGGAACGTCTATGG 59.556 47.826 0.00 0.00 45.86 2.74
2337 3999 2.803956 TCTGAGTGGAACGTCTATGGT 58.196 47.619 0.00 0.00 45.86 3.55
2338 4000 2.753452 TCTGAGTGGAACGTCTATGGTC 59.247 50.000 0.00 0.00 45.86 4.02
2339 4001 1.471287 TGAGTGGAACGTCTATGGTCG 59.529 52.381 0.00 0.00 45.86 4.79
2340 4002 1.741706 GAGTGGAACGTCTATGGTCGA 59.258 52.381 2.37 0.00 45.86 4.20
2341 4003 1.743958 AGTGGAACGTCTATGGTCGAG 59.256 52.381 2.37 0.00 45.86 4.04
2342 4004 1.471684 GTGGAACGTCTATGGTCGAGT 59.528 52.381 2.37 0.00 0.00 4.18
2343 4005 1.471287 TGGAACGTCTATGGTCGAGTG 59.529 52.381 2.37 0.00 0.00 3.51
2344 4006 1.202268 GGAACGTCTATGGTCGAGTGG 60.202 57.143 2.37 0.00 0.00 4.00
2345 4007 1.741706 GAACGTCTATGGTCGAGTGGA 59.258 52.381 2.37 0.00 0.00 4.02
2346 4008 2.054232 ACGTCTATGGTCGAGTGGAT 57.946 50.000 2.37 0.00 0.00 3.41
2347 4009 1.676529 ACGTCTATGGTCGAGTGGATG 59.323 52.381 2.37 0.00 0.00 3.51
2348 4010 1.947456 CGTCTATGGTCGAGTGGATGA 59.053 52.381 0.00 0.00 0.00 2.92
2349 4011 2.554462 CGTCTATGGTCGAGTGGATGAT 59.446 50.000 0.00 0.00 0.00 2.45
2350 4012 3.610349 CGTCTATGGTCGAGTGGATGATG 60.610 52.174 0.00 0.00 0.00 3.07
2351 4013 2.893489 TCTATGGTCGAGTGGATGATGG 59.107 50.000 0.00 0.00 0.00 3.51
2352 4014 1.500474 ATGGTCGAGTGGATGATGGT 58.500 50.000 0.00 0.00 0.00 3.55
2353 4015 2.153034 TGGTCGAGTGGATGATGGTA 57.847 50.000 0.00 0.00 0.00 3.25
2354 4016 2.677914 TGGTCGAGTGGATGATGGTAT 58.322 47.619 0.00 0.00 0.00 2.73
2355 4017 3.038280 TGGTCGAGTGGATGATGGTATT 58.962 45.455 0.00 0.00 0.00 1.89
2356 4018 3.069586 TGGTCGAGTGGATGATGGTATTC 59.930 47.826 0.00 0.00 0.00 1.75
2357 4019 3.322254 GGTCGAGTGGATGATGGTATTCT 59.678 47.826 0.00 0.00 0.00 2.40
2358 4020 4.202264 GGTCGAGTGGATGATGGTATTCTT 60.202 45.833 0.00 0.00 0.00 2.52
2359 4021 5.360591 GTCGAGTGGATGATGGTATTCTTT 58.639 41.667 0.00 0.00 0.00 2.52
2360 4022 5.235186 GTCGAGTGGATGATGGTATTCTTTG 59.765 44.000 0.00 0.00 0.00 2.77
2361 4023 5.128663 TCGAGTGGATGATGGTATTCTTTGA 59.871 40.000 0.00 0.00 0.00 2.69
2362 4024 5.817296 CGAGTGGATGATGGTATTCTTTGAA 59.183 40.000 0.00 0.00 0.00 2.69
2363 4025 6.484643 CGAGTGGATGATGGTATTCTTTGAAT 59.515 38.462 0.00 0.00 0.00 2.57
2364 4026 7.519488 CGAGTGGATGATGGTATTCTTTGAATG 60.519 40.741 3.35 0.00 0.00 2.67
2365 4027 7.348815 AGTGGATGATGGTATTCTTTGAATGA 58.651 34.615 3.35 0.00 0.00 2.57
2366 4028 8.003044 AGTGGATGATGGTATTCTTTGAATGAT 58.997 33.333 3.35 0.00 0.00 2.45
2367 4029 8.295288 GTGGATGATGGTATTCTTTGAATGATC 58.705 37.037 3.35 0.00 0.00 2.92
2368 4030 7.449395 TGGATGATGGTATTCTTTGAATGATCC 59.551 37.037 3.35 0.00 0.00 3.36
2369 4031 7.668886 GGATGATGGTATTCTTTGAATGATCCT 59.331 37.037 3.35 0.00 0.00 3.24
2370 4032 7.812690 TGATGGTATTCTTTGAATGATCCTG 57.187 36.000 3.35 0.00 0.00 3.86
2371 4033 6.774170 TGATGGTATTCTTTGAATGATCCTGG 59.226 38.462 3.35 0.00 0.00 4.45
2372 4034 4.889409 TGGTATTCTTTGAATGATCCTGGC 59.111 41.667 3.35 0.00 0.00 4.85
2373 4035 5.136105 GGTATTCTTTGAATGATCCTGGCT 58.864 41.667 3.35 0.00 0.00 4.75
2374 4036 5.595952 GGTATTCTTTGAATGATCCTGGCTT 59.404 40.000 3.35 0.00 0.00 4.35
2375 4037 6.097412 GGTATTCTTTGAATGATCCTGGCTTT 59.903 38.462 3.35 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.267426 CGATATGGTCGCAAGTTCACA 58.733 47.619 0.00 0.00 44.33 3.58
100 101 2.992543 CGCTAGCATCCAATAGCTCTTC 59.007 50.000 16.45 0.00 41.82 2.87
138 139 1.831736 GCAGGTGAGTAGAAAGGGCTA 59.168 52.381 0.00 0.00 0.00 3.93
140 141 0.615850 AGCAGGTGAGTAGAAAGGGC 59.384 55.000 0.00 0.00 0.00 5.19
149 150 2.598565 TCACTAACAGAGCAGGTGAGT 58.401 47.619 0.00 0.00 33.74 3.41
186 188 1.838112 AATCCACACACAATCGCCAT 58.162 45.000 0.00 0.00 0.00 4.40
208 210 8.579863 CACTATAGTCATATCATTGAGGTGACA 58.420 37.037 24.38 15.90 41.12 3.58
255 257 2.600420 CTCATCCAACAGTTCGTCGATG 59.400 50.000 0.00 0.00 36.38 3.84
261 263 2.224079 CACCAACTCATCCAACAGTTCG 59.776 50.000 0.00 0.00 30.06 3.95
314 316 2.416547 CGGATTTGATGATATCCCGCAC 59.583 50.000 0.00 0.00 37.60 5.34
321 323 5.563592 TCTGCCATTCGGATTTGATGATAT 58.436 37.500 0.00 0.00 0.00 1.63
348 1991 4.025979 GTGAATGCGGTTTTATACTCCTCG 60.026 45.833 0.00 0.00 0.00 4.63
357 2000 4.890088 AGTGAGTAGTGAATGCGGTTTTA 58.110 39.130 0.00 0.00 0.00 1.52
365 2008 1.471676 GCCCCGAGTGAGTAGTGAATG 60.472 57.143 0.00 0.00 0.00 2.67
366 2009 0.824759 GCCCCGAGTGAGTAGTGAAT 59.175 55.000 0.00 0.00 0.00 2.57
462 2105 4.232221 CACAAATTCTGATCAGTGGTTGC 58.768 43.478 21.92 0.00 0.00 4.17
465 2108 3.254166 GCACACAAATTCTGATCAGTGGT 59.746 43.478 21.92 11.14 0.00 4.16
477 2120 3.546020 CGAAGAACACGAGCACACAAATT 60.546 43.478 0.00 0.00 0.00 1.82
482 2125 1.125021 CATCGAAGAACACGAGCACAC 59.875 52.381 0.00 0.00 43.58 3.82
486 2129 4.979197 AGAATATCATCGAAGAACACGAGC 59.021 41.667 0.00 0.00 43.58 5.03
552 2195 1.160137 GCAGCAACTACAGAACCTGG 58.840 55.000 0.00 0.00 35.51 4.45
562 2205 1.226974 GATCCGCTCGCAGCAACTA 60.227 57.895 8.52 0.00 42.58 2.24
603 2246 1.140452 TGTTGTTGGCCAAATGCACAT 59.860 42.857 22.47 0.00 43.89 3.21
659 2302 0.966370 GCTAGGGTCAGTGGAGACGT 60.966 60.000 0.00 0.00 39.42 4.34
669 2312 2.239402 TGCATCAATCTTGCTAGGGTCA 59.761 45.455 0.00 0.00 40.77 4.02
687 2330 0.250684 TCGGCCAGTTCTTGATTGCA 60.251 50.000 2.24 0.00 0.00 4.08
688 2331 0.881118 TTCGGCCAGTTCTTGATTGC 59.119 50.000 2.24 0.00 0.00 3.56
709 2352 4.523173 ACGTACTTCCTTCACATTCAGAGA 59.477 41.667 0.00 0.00 0.00 3.10
732 2375 4.298626 ACCTTGATAGTCCCAAGATGCTA 58.701 43.478 0.00 0.00 42.57 3.49
736 2379 6.014499 CGGTAATACCTTGATAGTCCCAAGAT 60.014 42.308 7.95 0.00 42.57 2.40
745 2388 5.175126 CGAACTTGCGGTAATACCTTGATAG 59.825 44.000 7.95 1.02 35.66 2.08
748 2391 3.255725 CGAACTTGCGGTAATACCTTGA 58.744 45.455 7.95 0.00 35.66 3.02
751 2394 2.231964 TGACGAACTTGCGGTAATACCT 59.768 45.455 7.95 0.00 35.66 3.08
768 2411 3.302935 CGATGATCCTGAAATGCTTGACG 60.303 47.826 0.00 0.00 0.00 4.35
792 2435 8.515695 TCTTTAGTAGATTGAATAGTGGTCGA 57.484 34.615 0.00 0.00 0.00 4.20
813 2456 1.112916 CAAACGGGTGCCCCTTCTTT 61.113 55.000 8.43 1.65 42.67 2.52
885 2528 0.308993 GTTGCAACACTGGAGCTGAC 59.691 55.000 24.52 0.00 0.00 3.51
938 2581 0.105778 TCCGTAATCGCATGCATCCA 59.894 50.000 19.57 0.00 35.54 3.41
954 2597 4.379243 AGAACTGCGCCCACTCCG 62.379 66.667 4.18 0.00 0.00 4.63
1203 2846 1.812571 CAAATCTTGTAACGCAGCCCT 59.187 47.619 0.00 0.00 0.00 5.19
1237 2886 0.884704 CCAGCCGCACTGTTAGTTGT 60.885 55.000 3.30 0.00 45.68 3.32
1239 2888 1.966451 GCCAGCCGCACTGTTAGTT 60.966 57.895 3.30 0.00 45.68 2.24
1251 2900 2.046892 TGAGAAAGAGCGCCAGCC 60.047 61.111 2.29 0.00 46.67 4.85
1254 2903 2.048222 CGGTGAGAAAGAGCGCCA 60.048 61.111 2.29 0.00 34.38 5.69
1263 2912 0.174617 TCATATGCACGCGGTGAGAA 59.825 50.000 12.47 0.00 35.23 2.87
1268 2917 0.108377 TTCTGTCATATGCACGCGGT 60.108 50.000 12.47 0.00 0.00 5.68
1275 2924 6.283694 TCCTGATACTTGTTCTGTCATATGC 58.716 40.000 0.00 0.00 0.00 3.14
1279 2928 6.365970 AACTCCTGATACTTGTTCTGTCAT 57.634 37.500 0.00 0.00 0.00 3.06
1283 2932 6.226787 ACAGAAACTCCTGATACTTGTTCTG 58.773 40.000 8.18 8.18 37.59 3.02
1287 2936 5.305644 ACAGACAGAAACTCCTGATACTTGT 59.694 40.000 0.00 0.00 37.59 3.16
1291 2940 5.392767 TGACAGACAGAAACTCCTGATAC 57.607 43.478 0.00 0.00 37.59 2.24
1294 2943 3.181465 GGTTGACAGACAGAAACTCCTGA 60.181 47.826 0.00 0.00 37.59 3.86
1298 2947 3.312697 GGTTGGTTGACAGACAGAAACTC 59.687 47.826 0.00 0.00 0.00 3.01
1320 2969 3.579709 AGCGCGAATATCCTCAATACAG 58.420 45.455 12.10 0.00 0.00 2.74
1323 2972 5.386958 AACTAGCGCGAATATCCTCAATA 57.613 39.130 12.10 0.00 0.00 1.90
1329 2978 2.907392 GTCGTAACTAGCGCGAATATCC 59.093 50.000 12.10 0.00 36.37 2.59
1335 2984 1.226211 GCTGTCGTAACTAGCGCGA 60.226 57.895 12.10 0.00 0.00 5.87
1341 2990 5.779922 ACTTTCTCATTGCTGTCGTAACTA 58.220 37.500 0.00 0.00 0.00 2.24
1344 2993 5.053811 TGAACTTTCTCATTGCTGTCGTAA 58.946 37.500 0.00 0.00 0.00 3.18
1347 2996 3.742882 TCTGAACTTTCTCATTGCTGTCG 59.257 43.478 0.00 0.00 0.00 4.35
1349 2998 5.371526 TCTTCTGAACTTTCTCATTGCTGT 58.628 37.500 0.00 0.00 0.00 4.40
1360 3009 7.003402 ACTGCTCTCTTATCTTCTGAACTTT 57.997 36.000 0.00 0.00 0.00 2.66
1368 3017 3.620821 GGCACAACTGCTCTCTTATCTTC 59.379 47.826 0.00 0.00 43.66 2.87
1370 3019 2.568956 TGGCACAACTGCTCTCTTATCT 59.431 45.455 0.00 0.00 43.66 1.98
1387 3036 1.207089 CTTAGGATCAGGACGTTGGCA 59.793 52.381 0.00 0.00 0.00 4.92
1404 3053 0.475044 ACCAAGTGAAACGCCCCTTA 59.525 50.000 0.00 0.00 45.86 2.69
1407 3056 2.265904 GGACCAAGTGAAACGCCCC 61.266 63.158 0.00 0.00 45.86 5.80
1410 3059 2.613506 CCCGGACCAAGTGAAACGC 61.614 63.158 0.73 0.00 45.86 4.84
1413 3062 0.326927 GATCCCCGGACCAAGTGAAA 59.673 55.000 0.73 0.00 0.00 2.69
1425 3074 5.499004 TGGGAAAATATAGAAGATCCCCG 57.501 43.478 6.21 0.00 44.83 5.73
1428 3077 9.579932 AATCTGTTGGGAAAATATAGAAGATCC 57.420 33.333 0.00 0.00 0.00 3.36
1431 3080 9.177608 CACAATCTGTTGGGAAAATATAGAAGA 57.822 33.333 0.00 0.00 41.40 2.87
1434 3083 6.321181 GCCACAATCTGTTGGGAAAATATAGA 59.679 38.462 0.00 0.00 41.40 1.98
1437 3086 5.025453 AGCCACAATCTGTTGGGAAAATAT 58.975 37.500 0.00 0.00 41.40 1.28
1445 3094 1.683011 CCCCTAGCCACAATCTGTTGG 60.683 57.143 0.00 0.00 39.70 3.77
1452 3101 2.746375 CGAGCCCCCTAGCCACAAT 61.746 63.158 0.00 0.00 0.00 2.71
1464 3113 3.955234 CTATAGCGCGCTCGAGCCC 62.955 68.421 40.23 21.72 41.84 5.19
1503 3152 4.142249 TGTCGTCCTATTGTACTGTCATGG 60.142 45.833 0.00 0.00 0.00 3.66
1509 3158 3.487042 CGGAGTGTCGTCCTATTGTACTG 60.487 52.174 0.00 0.00 34.00 2.74
1516 3165 2.068834 AATCCGGAGTGTCGTCCTAT 57.931 50.000 11.34 0.00 34.00 2.57
1518 3167 0.531200 GAAATCCGGAGTGTCGTCCT 59.469 55.000 11.34 0.00 34.00 3.85
1522 3171 0.246635 ACTGGAAATCCGGAGTGTCG 59.753 55.000 11.34 0.00 45.36 4.35
1524 3173 1.002087 GTCACTGGAAATCCGGAGTGT 59.998 52.381 11.34 0.00 45.36 3.55
1527 3176 0.905357 AGGTCACTGGAAATCCGGAG 59.095 55.000 11.34 7.31 45.36 4.63
1530 3179 1.553248 TGGTAGGTCACTGGAAATCCG 59.447 52.381 0.00 0.00 39.43 4.18
1536 3185 1.327690 GGCGATGGTAGGTCACTGGA 61.328 60.000 0.00 0.00 0.00 3.86
1560 3209 0.179097 TTTCCCAGGCAAACAAACGC 60.179 50.000 0.00 0.00 0.00 4.84
1564 3213 3.303938 TCATCTTTTCCCAGGCAAACAA 58.696 40.909 0.00 0.00 0.00 2.83
1566 3215 4.039124 TCTTTCATCTTTTCCCAGGCAAAC 59.961 41.667 0.00 0.00 0.00 2.93
1572 3221 8.284945 TGATACAATCTTTCATCTTTTCCCAG 57.715 34.615 0.00 0.00 0.00 4.45
1590 3239 8.334263 TCATCTGCACATAGTTTTTGATACAA 57.666 30.769 0.00 0.00 0.00 2.41
1593 3242 8.764287 CGTATCATCTGCACATAGTTTTTGATA 58.236 33.333 0.00 0.00 0.00 2.15
1599 3248 5.907207 AGACGTATCATCTGCACATAGTTT 58.093 37.500 0.00 0.00 0.00 2.66
1769 3418 6.990349 GGACTCGGTTTGATATGGATTTTCTA 59.010 38.462 0.00 0.00 0.00 2.10
1788 3437 4.145997 CGTTTTTATTCCGTTTGGACTCG 58.854 43.478 0.00 0.00 46.45 4.18
1835 3485 6.074356 CGTTGATTTCACTTCCCAAAATTCAC 60.074 38.462 0.00 0.00 0.00 3.18
1839 3489 4.306600 GCGTTGATTTCACTTCCCAAAAT 58.693 39.130 0.00 0.00 0.00 1.82
1850 3500 1.653609 CATCGTCTCGCGTTGATTTCA 59.346 47.619 5.77 0.00 41.39 2.69
1851 3501 1.589968 GCATCGTCTCGCGTTGATTTC 60.590 52.381 5.77 0.00 41.39 2.17
1852 3502 0.370273 GCATCGTCTCGCGTTGATTT 59.630 50.000 5.77 0.00 41.39 2.17
1892 3550 0.683412 ACTTAGAACCACGACACCCC 59.317 55.000 0.00 0.00 0.00 4.95
1893 3551 1.617357 AGACTTAGAACCACGACACCC 59.383 52.381 0.00 0.00 0.00 4.61
1894 3552 2.295349 TCAGACTTAGAACCACGACACC 59.705 50.000 0.00 0.00 0.00 4.16
1935 3593 5.467035 AGCTAAGATCTTGCCTCTACATC 57.533 43.478 18.47 0.00 0.00 3.06
1939 3597 5.182190 CGTCATAGCTAAGATCTTGCCTCTA 59.818 44.000 18.47 12.63 0.00 2.43
1961 3619 1.081641 CTCGCGTGTACAACTCCGT 60.082 57.895 5.77 0.00 0.00 4.69
1962 3620 0.662374 AACTCGCGTGTACAACTCCG 60.662 55.000 14.90 0.00 0.00 4.63
1964 3622 3.419655 CGTAAAACTCGCGTGTACAACTC 60.420 47.826 14.90 3.23 0.00 3.01
1975 3633 1.126296 GCCTGAACTCGTAAAACTCGC 59.874 52.381 0.00 0.00 0.00 5.03
1980 3640 2.370849 AGAAGGGCCTGAACTCGTAAAA 59.629 45.455 6.92 0.00 0.00 1.52
2003 3663 3.504375 ACGTAGGGTTGTTACTTCCTCT 58.496 45.455 0.00 0.00 0.00 3.69
2040 3700 2.626266 ACGCATATAATCCAGTCGACCA 59.374 45.455 13.01 0.00 0.00 4.02
2047 3707 5.522097 TGTAACACACACGCATATAATCCAG 59.478 40.000 0.00 0.00 30.04 3.86
2056 3716 1.234821 CCCTTGTAACACACACGCAT 58.765 50.000 0.00 0.00 36.69 4.73
2059 3719 0.941542 CACCCCTTGTAACACACACG 59.058 55.000 0.00 0.00 36.69 4.49
2062 3722 0.533308 TCGCACCCCTTGTAACACAC 60.533 55.000 0.00 0.00 0.00 3.82
2075 3735 2.671963 GGGACAAGGGTTCGCACC 60.672 66.667 0.00 0.00 43.37 5.01
2098 3758 3.648683 ACTCTATATAAGCCACCCCCA 57.351 47.619 0.00 0.00 0.00 4.96
2131 3793 0.245539 CTTTGTAACCGAGGCCGAGA 59.754 55.000 0.00 0.00 38.22 4.04
2132 3794 0.739813 CCTTTGTAACCGAGGCCGAG 60.740 60.000 0.00 0.00 38.22 4.63
2133 3795 1.294138 CCTTTGTAACCGAGGCCGA 59.706 57.895 0.00 0.00 38.22 5.54
2135 3797 0.251033 AACCCTTTGTAACCGAGGCC 60.251 55.000 0.00 0.00 0.00 5.19
2139 3801 4.436113 ACCTTAAACCCTTTGTAACCGA 57.564 40.909 0.00 0.00 0.00 4.69
2140 3802 5.062528 TGTACCTTAAACCCTTTGTAACCG 58.937 41.667 0.00 0.00 0.00 4.44
2141 3803 8.634335 TTATGTACCTTAAACCCTTTGTAACC 57.366 34.615 0.00 0.00 0.00 2.85
2197 3859 8.846211 GGCTTAATTGTCATTTATAGCACCTAA 58.154 33.333 15.53 0.00 0.00 2.69
2198 3860 8.217799 AGGCTTAATTGTCATTTATAGCACCTA 58.782 33.333 15.53 0.00 0.00 3.08
2199 3861 7.062957 AGGCTTAATTGTCATTTATAGCACCT 58.937 34.615 15.53 0.00 0.00 4.00
2200 3862 7.277174 AGGCTTAATTGTCATTTATAGCACC 57.723 36.000 15.53 0.00 0.00 5.01
2201 3863 8.836413 TGTAGGCTTAATTGTCATTTATAGCAC 58.164 33.333 0.00 10.59 0.00 4.40
2202 3864 8.972458 TGTAGGCTTAATTGTCATTTATAGCA 57.028 30.769 0.00 0.00 0.00 3.49
2203 3865 9.884465 CTTGTAGGCTTAATTGTCATTTATAGC 57.116 33.333 0.00 0.00 0.00 2.97
2210 3872 8.190784 GCATTTACTTGTAGGCTTAATTGTCAT 58.809 33.333 0.00 0.00 0.00 3.06
2211 3873 7.393234 AGCATTTACTTGTAGGCTTAATTGTCA 59.607 33.333 0.00 0.00 0.00 3.58
2212 3874 7.762382 AGCATTTACTTGTAGGCTTAATTGTC 58.238 34.615 0.00 0.00 0.00 3.18
2213 3875 7.414098 CGAGCATTTACTTGTAGGCTTAATTGT 60.414 37.037 0.00 0.00 0.00 2.71
2214 3876 6.907212 CGAGCATTTACTTGTAGGCTTAATTG 59.093 38.462 0.00 0.00 0.00 2.32
2215 3877 6.821665 TCGAGCATTTACTTGTAGGCTTAATT 59.178 34.615 0.00 0.00 0.00 1.40
2216 3878 6.258068 GTCGAGCATTTACTTGTAGGCTTAAT 59.742 38.462 0.00 0.00 0.00 1.40
2217 3879 5.579511 GTCGAGCATTTACTTGTAGGCTTAA 59.420 40.000 0.00 0.00 0.00 1.85
2218 3880 5.107133 GTCGAGCATTTACTTGTAGGCTTA 58.893 41.667 0.00 0.00 0.00 3.09
2219 3881 3.933332 GTCGAGCATTTACTTGTAGGCTT 59.067 43.478 0.00 0.00 0.00 4.35
2220 3882 3.522553 GTCGAGCATTTACTTGTAGGCT 58.477 45.455 0.00 0.00 0.00 4.58
2221 3883 2.608090 GGTCGAGCATTTACTTGTAGGC 59.392 50.000 10.30 0.00 0.00 3.93
2222 3884 2.858344 CGGTCGAGCATTTACTTGTAGG 59.142 50.000 15.89 0.00 0.00 3.18
2223 3885 3.508762 ACGGTCGAGCATTTACTTGTAG 58.491 45.455 15.89 0.00 0.00 2.74
2224 3886 3.581024 ACGGTCGAGCATTTACTTGTA 57.419 42.857 15.89 0.00 0.00 2.41
2225 3887 2.450609 ACGGTCGAGCATTTACTTGT 57.549 45.000 15.89 0.00 0.00 3.16
2226 3888 5.464965 AATAACGGTCGAGCATTTACTTG 57.535 39.130 15.89 0.00 0.00 3.16
2227 3889 4.266976 CGAATAACGGTCGAGCATTTACTT 59.733 41.667 15.89 7.58 41.02 2.24
2228 3890 3.795101 CGAATAACGGTCGAGCATTTACT 59.205 43.478 15.89 1.04 41.02 2.24
2229 3891 4.098532 CGAATAACGGTCGAGCATTTAC 57.901 45.455 15.89 0.37 41.02 2.01
2235 3897 1.629504 GCACGAATAACGGTCGAGC 59.370 57.895 4.06 4.06 45.22 5.03
2243 3905 4.992381 AAAGTCACTCTGCACGAATAAC 57.008 40.909 0.00 0.00 0.00 1.89
2244 3906 4.625742 GCTAAAGTCACTCTGCACGAATAA 59.374 41.667 0.00 0.00 0.00 1.40
2245 3907 4.082190 AGCTAAAGTCACTCTGCACGAATA 60.082 41.667 0.00 0.00 0.00 1.75
2246 3908 2.996621 GCTAAAGTCACTCTGCACGAAT 59.003 45.455 0.00 0.00 0.00 3.34
2247 3909 2.035961 AGCTAAAGTCACTCTGCACGAA 59.964 45.455 0.00 0.00 0.00 3.85
2248 3910 1.613925 AGCTAAAGTCACTCTGCACGA 59.386 47.619 0.00 0.00 0.00 4.35
2249 3911 1.989165 GAGCTAAAGTCACTCTGCACG 59.011 52.381 0.00 0.00 0.00 5.34
2250 3912 3.311486 AGAGCTAAAGTCACTCTGCAC 57.689 47.619 0.00 0.00 39.29 4.57
2251 3913 3.576118 AGAAGAGCTAAAGTCACTCTGCA 59.424 43.478 0.00 0.00 39.84 4.41
2252 3914 3.925913 CAGAAGAGCTAAAGTCACTCTGC 59.074 47.826 0.00 0.00 39.84 4.26
2253 3915 3.925913 GCAGAAGAGCTAAAGTCACTCTG 59.074 47.826 0.00 0.00 39.84 3.35
2254 3916 3.056179 GGCAGAAGAGCTAAAGTCACTCT 60.056 47.826 0.00 0.00 42.51 3.24
2255 3917 3.258228 GGCAGAAGAGCTAAAGTCACTC 58.742 50.000 0.00 0.00 34.17 3.51
2256 3918 2.027653 GGGCAGAAGAGCTAAAGTCACT 60.028 50.000 0.00 0.00 34.17 3.41
2257 3919 2.351455 GGGCAGAAGAGCTAAAGTCAC 58.649 52.381 0.00 0.00 34.17 3.67
2258 3920 1.066858 CGGGCAGAAGAGCTAAAGTCA 60.067 52.381 0.00 0.00 34.17 3.41
2259 3921 1.066787 ACGGGCAGAAGAGCTAAAGTC 60.067 52.381 0.00 0.00 34.17 3.01
2260 3922 0.977395 ACGGGCAGAAGAGCTAAAGT 59.023 50.000 0.00 0.00 34.17 2.66
2261 3923 1.646189 GACGGGCAGAAGAGCTAAAG 58.354 55.000 0.00 0.00 34.17 1.85
2262 3924 0.108804 CGACGGGCAGAAGAGCTAAA 60.109 55.000 0.00 0.00 34.17 1.85
2263 3925 0.963856 TCGACGGGCAGAAGAGCTAA 60.964 55.000 0.00 0.00 34.17 3.09
2264 3926 1.377366 CTCGACGGGCAGAAGAGCTA 61.377 60.000 0.00 0.00 34.17 3.32
2265 3927 2.676822 TCGACGGGCAGAAGAGCT 60.677 61.111 0.00 0.00 34.17 4.09
2266 3928 2.202676 CTCGACGGGCAGAAGAGC 60.203 66.667 0.00 0.00 0.00 4.09
2267 3929 1.153939 CACTCGACGGGCAGAAGAG 60.154 63.158 0.00 10.87 34.77 2.85
2268 3930 2.636412 CCACTCGACGGGCAGAAGA 61.636 63.158 0.00 0.00 0.00 2.87
2269 3931 2.125912 CCACTCGACGGGCAGAAG 60.126 66.667 0.00 0.00 0.00 2.85
2275 3937 2.966309 GCAAAAGCCACTCGACGGG 61.966 63.158 0.00 0.00 0.00 5.28
2276 3938 2.556287 GCAAAAGCCACTCGACGG 59.444 61.111 0.00 0.00 0.00 4.79
2277 3939 2.170985 CGCAAAAGCCACTCGACG 59.829 61.111 0.00 0.00 0.00 5.12
2278 3940 1.204312 GTCGCAAAAGCCACTCGAC 59.796 57.895 0.00 0.00 41.80 4.20
2279 3941 2.307309 CGTCGCAAAAGCCACTCGA 61.307 57.895 0.00 0.00 0.00 4.04
2280 3942 2.101209 AACGTCGCAAAAGCCACTCG 62.101 55.000 0.00 0.00 0.00 4.18
2281 3943 0.863144 TAACGTCGCAAAAGCCACTC 59.137 50.000 0.00 0.00 0.00 3.51
2282 3944 0.865769 CTAACGTCGCAAAAGCCACT 59.134 50.000 0.00 0.00 0.00 4.00
2283 3945 0.863144 TCTAACGTCGCAAAAGCCAC 59.137 50.000 0.00 0.00 0.00 5.01
2284 3946 1.144969 CTCTAACGTCGCAAAAGCCA 58.855 50.000 0.00 0.00 0.00 4.75
2285 3947 1.136336 CACTCTAACGTCGCAAAAGCC 60.136 52.381 0.00 0.00 0.00 4.35
2286 3948 1.790623 TCACTCTAACGTCGCAAAAGC 59.209 47.619 0.00 0.00 0.00 3.51
2287 3949 2.792674 TGTCACTCTAACGTCGCAAAAG 59.207 45.455 0.00 0.00 0.00 2.27
2288 3950 2.811855 TGTCACTCTAACGTCGCAAAA 58.188 42.857 0.00 0.00 0.00 2.44
2289 3951 2.495409 TGTCACTCTAACGTCGCAAA 57.505 45.000 0.00 0.00 0.00 3.68
2290 3952 2.717580 ATGTCACTCTAACGTCGCAA 57.282 45.000 0.00 0.00 0.00 4.85
2291 3953 2.030628 TCAATGTCACTCTAACGTCGCA 60.031 45.455 0.00 0.00 0.00 5.10
2292 3954 2.592194 TCAATGTCACTCTAACGTCGC 58.408 47.619 0.00 0.00 0.00 5.19
2293 3955 5.096169 AGAATCAATGTCACTCTAACGTCG 58.904 41.667 0.00 0.00 0.00 5.12
2294 3956 6.809196 AGAAGAATCAATGTCACTCTAACGTC 59.191 38.462 0.00 0.00 0.00 4.34
2295 3957 6.587990 CAGAAGAATCAATGTCACTCTAACGT 59.412 38.462 0.00 0.00 0.00 3.99
2296 3958 6.808704 TCAGAAGAATCAATGTCACTCTAACG 59.191 38.462 0.00 0.00 0.00 3.18
2297 3959 7.816995 ACTCAGAAGAATCAATGTCACTCTAAC 59.183 37.037 0.00 0.00 0.00 2.34
2298 3960 7.816513 CACTCAGAAGAATCAATGTCACTCTAA 59.183 37.037 0.00 0.00 0.00 2.10
2299 3961 7.318893 CACTCAGAAGAATCAATGTCACTCTA 58.681 38.462 0.00 0.00 0.00 2.43
2300 3962 6.164876 CACTCAGAAGAATCAATGTCACTCT 58.835 40.000 0.00 0.00 0.00 3.24
2301 3963 5.350914 CCACTCAGAAGAATCAATGTCACTC 59.649 44.000 0.00 0.00 0.00 3.51
2302 3964 5.012458 TCCACTCAGAAGAATCAATGTCACT 59.988 40.000 0.00 0.00 0.00 3.41
2303 3965 5.240891 TCCACTCAGAAGAATCAATGTCAC 58.759 41.667 0.00 0.00 0.00 3.67
2304 3966 5.488262 TCCACTCAGAAGAATCAATGTCA 57.512 39.130 0.00 0.00 0.00 3.58
2305 3967 5.163913 CGTTCCACTCAGAAGAATCAATGTC 60.164 44.000 0.00 0.00 0.00 3.06
2306 3968 4.692625 CGTTCCACTCAGAAGAATCAATGT 59.307 41.667 0.00 0.00 0.00 2.71
2307 3969 4.692625 ACGTTCCACTCAGAAGAATCAATG 59.307 41.667 0.00 0.00 0.00 2.82
2308 3970 4.899502 ACGTTCCACTCAGAAGAATCAAT 58.100 39.130 0.00 0.00 0.00 2.57
2309 3971 4.039245 AGACGTTCCACTCAGAAGAATCAA 59.961 41.667 0.00 0.00 0.00 2.57
2310 3972 3.574396 AGACGTTCCACTCAGAAGAATCA 59.426 43.478 0.00 0.00 0.00 2.57
2311 3973 4.181309 AGACGTTCCACTCAGAAGAATC 57.819 45.455 0.00 0.00 0.00 2.52
2312 3974 5.394663 CCATAGACGTTCCACTCAGAAGAAT 60.395 44.000 0.00 0.00 0.00 2.40
2313 3975 4.082190 CCATAGACGTTCCACTCAGAAGAA 60.082 45.833 0.00 0.00 0.00 2.52
2314 3976 3.444034 CCATAGACGTTCCACTCAGAAGA 59.556 47.826 0.00 0.00 0.00 2.87
2315 3977 3.193691 ACCATAGACGTTCCACTCAGAAG 59.806 47.826 0.00 0.00 0.00 2.85
2316 3978 3.162666 ACCATAGACGTTCCACTCAGAA 58.837 45.455 0.00 0.00 0.00 3.02
2317 3979 2.753452 GACCATAGACGTTCCACTCAGA 59.247 50.000 0.00 0.00 0.00 3.27
2318 3980 2.478031 CGACCATAGACGTTCCACTCAG 60.478 54.545 0.00 0.00 0.00 3.35
2319 3981 1.471287 CGACCATAGACGTTCCACTCA 59.529 52.381 0.00 0.00 0.00 3.41
2320 3982 1.741706 TCGACCATAGACGTTCCACTC 59.258 52.381 0.00 0.00 32.81 3.51
2321 3983 1.743958 CTCGACCATAGACGTTCCACT 59.256 52.381 0.00 0.00 32.81 4.00
2322 3984 1.471684 ACTCGACCATAGACGTTCCAC 59.528 52.381 0.00 0.00 32.81 4.02
2323 3985 1.471287 CACTCGACCATAGACGTTCCA 59.529 52.381 0.00 0.00 32.81 3.53
2324 3986 1.202268 CCACTCGACCATAGACGTTCC 60.202 57.143 0.00 0.00 32.81 3.62
2325 3987 1.741706 TCCACTCGACCATAGACGTTC 59.258 52.381 0.00 0.00 32.81 3.95
2326 3988 1.830279 TCCACTCGACCATAGACGTT 58.170 50.000 0.00 0.00 32.81 3.99
2327 3989 1.676529 CATCCACTCGACCATAGACGT 59.323 52.381 0.00 0.00 32.81 4.34
2328 3990 1.947456 TCATCCACTCGACCATAGACG 59.053 52.381 0.00 0.00 0.00 4.18
2329 3991 3.305676 CCATCATCCACTCGACCATAGAC 60.306 52.174 0.00 0.00 0.00 2.59
2330 3992 2.893489 CCATCATCCACTCGACCATAGA 59.107 50.000 0.00 0.00 0.00 1.98
2331 3993 2.630098 ACCATCATCCACTCGACCATAG 59.370 50.000 0.00 0.00 0.00 2.23
2332 3994 2.677914 ACCATCATCCACTCGACCATA 58.322 47.619 0.00 0.00 0.00 2.74
2333 3995 1.500474 ACCATCATCCACTCGACCAT 58.500 50.000 0.00 0.00 0.00 3.55
2334 3996 2.153034 TACCATCATCCACTCGACCA 57.847 50.000 0.00 0.00 0.00 4.02
2335 3997 3.322254 AGAATACCATCATCCACTCGACC 59.678 47.826 0.00 0.00 0.00 4.79
2336 3998 4.592485 AGAATACCATCATCCACTCGAC 57.408 45.455 0.00 0.00 0.00 4.20
2337 3999 5.128663 TCAAAGAATACCATCATCCACTCGA 59.871 40.000 0.00 0.00 0.00 4.04
2338 4000 5.359756 TCAAAGAATACCATCATCCACTCG 58.640 41.667 0.00 0.00 0.00 4.18
2339 4001 7.500227 TCATTCAAAGAATACCATCATCCACTC 59.500 37.037 0.00 0.00 0.00 3.51
2340 4002 7.348815 TCATTCAAAGAATACCATCATCCACT 58.651 34.615 0.00 0.00 0.00 4.00
2341 4003 7.572523 TCATTCAAAGAATACCATCATCCAC 57.427 36.000 0.00 0.00 0.00 4.02
2342 4004 7.449395 GGATCATTCAAAGAATACCATCATCCA 59.551 37.037 0.00 0.00 0.00 3.41
2343 4005 7.668886 AGGATCATTCAAAGAATACCATCATCC 59.331 37.037 0.00 0.00 0.00 3.51
2344 4006 8.512956 CAGGATCATTCAAAGAATACCATCATC 58.487 37.037 0.00 0.00 0.00 2.92
2345 4007 7.450634 CCAGGATCATTCAAAGAATACCATCAT 59.549 37.037 0.00 0.00 0.00 2.45
2346 4008 6.774170 CCAGGATCATTCAAAGAATACCATCA 59.226 38.462 0.00 0.00 0.00 3.07
2347 4009 6.294397 GCCAGGATCATTCAAAGAATACCATC 60.294 42.308 0.00 0.00 0.00 3.51
2348 4010 5.537674 GCCAGGATCATTCAAAGAATACCAT 59.462 40.000 0.00 0.00 0.00 3.55
2349 4011 4.889409 GCCAGGATCATTCAAAGAATACCA 59.111 41.667 0.00 0.00 0.00 3.25
2350 4012 5.136105 AGCCAGGATCATTCAAAGAATACC 58.864 41.667 0.00 0.00 0.00 2.73
2351 4013 6.705863 AAGCCAGGATCATTCAAAGAATAC 57.294 37.500 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.