Multiple sequence alignment - TraesCS3A01G471000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G471000 chr3A 100.000 4739 0 0 1 4739 702581972 702577234 0.000000e+00 8752.0
1 TraesCS3A01G471000 chr3A 91.456 316 26 1 1 316 681728928 681728614 2.620000e-117 433.0
2 TraesCS3A01G471000 chr3A 91.640 311 24 2 4 314 40329557 40329249 3.390000e-116 429.0
3 TraesCS3A01G471000 chr3D 94.097 3964 167 27 351 4283 570045089 570041162 0.000000e+00 5962.0
4 TraesCS3A01G471000 chr3D 93.355 301 14 5 4442 4739 570038168 570037871 1.570000e-119 440.0
5 TraesCS3A01G471000 chr3D 97.917 96 2 0 4351 4446 570039036 570038941 2.930000e-37 167.0
6 TraesCS3A01G471000 chr3D 100.000 50 0 0 4278 4327 570037470 570037421 5.050000e-15 93.5
7 TraesCS3A01G471000 chr7A 84.063 1575 208 30 1651 3213 183838855 183837312 0.000000e+00 1478.0
8 TraesCS3A01G471000 chr7A 92.038 314 23 2 1 314 670301702 670301391 1.570000e-119 440.0
9 TraesCS3A01G471000 chr7A 91.401 314 26 1 1 314 91800517 91800205 3.390000e-116 429.0
10 TraesCS3A01G471000 chr7A 84.706 425 54 10 3276 3693 183837223 183836803 9.490000e-112 414.0
11 TraesCS3A01G471000 chr7A 75.500 800 169 19 2321 3105 17337251 17338038 2.690000e-97 366.0
12 TraesCS3A01G471000 chr7A 81.308 214 36 4 1127 1338 97406374 97406163 2.270000e-38 171.0
13 TraesCS3A01G471000 chr7A 100.000 28 0 0 4196 4223 183834651 183834678 9.000000e-03 52.8
14 TraesCS3A01G471000 chr7D 86.238 1119 127 18 2056 3170 179487536 179486441 0.000000e+00 1188.0
15 TraesCS3A01G471000 chr7D 85.906 447 60 3 1622 2065 179488027 179487581 1.540000e-129 473.0
16 TraesCS3A01G471000 chr7D 86.543 431 55 3 3239 3668 179486190 179485762 5.550000e-129 472.0
17 TraesCS3A01G471000 chr7D 75.000 820 187 14 2326 3136 17830595 17831405 3.490000e-96 363.0
18 TraesCS3A01G471000 chr7B 86.164 1113 128 17 2061 3170 145678533 145677444 0.000000e+00 1179.0
19 TraesCS3A01G471000 chr7B 85.558 457 61 4 3239 3694 145677195 145676743 1.540000e-129 473.0
20 TraesCS3A01G471000 chr7B 85.459 447 62 3 1622 2065 145679029 145678583 3.340000e-126 462.0
21 TraesCS3A01G471000 chr7B 80.000 215 36 7 1127 1338 48052946 48052736 8.210000e-33 152.0
22 TraesCS3A01G471000 chr3B 87.822 969 99 10 2201 3156 756677166 756676204 0.000000e+00 1118.0
23 TraesCS3A01G471000 chr3B 86.333 439 54 6 3239 3675 756676088 756675654 1.540000e-129 473.0
24 TraesCS3A01G471000 chr3B 77.155 731 79 55 516 1206 756678974 756678292 1.260000e-90 344.0
25 TraesCS3A01G471000 chr3B 84.470 264 38 1 1228 1491 756678176 756677916 1.690000e-64 257.0
26 TraesCS3A01G471000 chr3B 86.339 183 23 2 1887 2068 756677439 756677258 1.040000e-46 198.0
27 TraesCS3A01G471000 chrUn 80.719 612 102 11 2327 2933 383376514 383377114 3.340000e-126 462.0
28 TraesCS3A01G471000 chrUn 82.469 405 65 3 3245 3643 90377645 90377241 2.710000e-92 350.0
29 TraesCS3A01G471000 chrUn 82.469 405 65 3 3245 3643 376488164 376487760 2.710000e-92 350.0
30 TraesCS3A01G471000 chr6A 92.357 314 23 1 1 314 506666410 506666098 3.360000e-121 446.0
31 TraesCS3A01G471000 chr1A 92.787 305 21 1 12 316 554076264 554076567 1.570000e-119 440.0
32 TraesCS3A01G471000 chr1A 91.536 319 25 2 1 319 302939912 302939596 5.630000e-119 438.0
33 TraesCS3A01G471000 chr2A 92.508 307 21 2 9 314 772366392 772366087 5.630000e-119 438.0
34 TraesCS3A01G471000 chr5A 92.691 301 21 1 16 316 3183700 3183999 2.620000e-117 433.0
35 TraesCS3A01G471000 chr4A 79.666 359 66 6 2783 3136 715809941 715810297 7.870000e-63 252.0
36 TraesCS3A01G471000 chr4A 83.810 210 34 0 2326 2535 715809487 715809696 2.890000e-47 200.0
37 TraesCS3A01G471000 chr2B 84.507 71 11 0 1126 1196 1517836 1517906 2.370000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G471000 chr3A 702577234 702581972 4738 True 8752.000000 8752 100.00000 1 4739 1 chr3A.!!$R3 4738
1 TraesCS3A01G471000 chr3D 570037421 570045089 7668 True 1665.625000 5962 96.34225 351 4739 4 chr3D.!!$R1 4388
2 TraesCS3A01G471000 chr7A 183836803 183838855 2052 True 946.000000 1478 84.38450 1651 3693 2 chr7A.!!$R4 2042
3 TraesCS3A01G471000 chr7A 17337251 17338038 787 False 366.000000 366 75.50000 2321 3105 1 chr7A.!!$F1 784
4 TraesCS3A01G471000 chr7D 179485762 179488027 2265 True 711.000000 1188 86.22900 1622 3668 3 chr7D.!!$R1 2046
5 TraesCS3A01G471000 chr7D 17830595 17831405 810 False 363.000000 363 75.00000 2326 3136 1 chr7D.!!$F1 810
6 TraesCS3A01G471000 chr7B 145676743 145679029 2286 True 704.666667 1179 85.72700 1622 3694 3 chr7B.!!$R2 2072
7 TraesCS3A01G471000 chr3B 756675654 756678974 3320 True 478.000000 1118 84.42380 516 3675 5 chr3B.!!$R1 3159
8 TraesCS3A01G471000 chrUn 383376514 383377114 600 False 462.000000 462 80.71900 2327 2933 1 chrUn.!!$F1 606
9 TraesCS3A01G471000 chr4A 715809487 715810297 810 False 226.000000 252 81.73800 2326 3136 2 chr4A.!!$F1 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 92 0.109689 CGGCGAGAAAAGAGTCGAGT 60.110 55.0 0.0 0.0 38.50 4.18 F
891 920 0.178981 ATGCCATGCAGGTACATCCC 60.179 55.0 0.0 0.0 43.65 3.85 F
2224 2567 0.600557 TTGGCAAATTACCACTGGCG 59.399 50.0 0.0 0.0 36.76 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1042 1083 0.105593 GGCTGATCTCGCTCCATTGA 59.894 55.0 7.36 0.0 0.00 2.57 R
2547 2908 0.179166 CGTGCAATGTATGGCGCTTT 60.179 50.0 7.64 0.0 38.34 3.51 R
3937 4545 0.447801 CACTCGAAATGAAAGCCCCG 59.552 55.0 0.00 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.641783 GCTTTTGCATTGATTCGCCG 59.358 50.000 0.00 0.00 46.58 6.46
42 43 0.641783 CTTTTGCATTGATTCGCCGC 59.358 50.000 0.00 0.00 0.00 6.53
43 44 1.069924 TTTTGCATTGATTCGCCGCG 61.070 50.000 6.39 6.39 0.00 6.46
44 45 1.916697 TTTGCATTGATTCGCCGCGA 61.917 50.000 12.39 12.39 0.00 5.87
45 46 2.052766 GCATTGATTCGCCGCGAG 60.053 61.111 16.14 4.31 37.14 5.03
46 47 2.525248 GCATTGATTCGCCGCGAGA 61.525 57.895 16.14 3.37 37.14 4.04
47 48 2.005995 CATTGATTCGCCGCGAGAA 58.994 52.632 16.14 13.84 37.14 2.87
48 49 0.373370 CATTGATTCGCCGCGAGAAA 59.627 50.000 16.14 11.75 37.14 2.52
49 50 1.083489 ATTGATTCGCCGCGAGAAAA 58.917 45.000 16.14 11.41 37.14 2.29
50 51 0.165079 TTGATTCGCCGCGAGAAAAC 59.835 50.000 16.14 15.18 37.14 2.43
51 52 1.295930 GATTCGCCGCGAGAAAACG 60.296 57.895 16.14 7.88 37.14 3.60
52 53 1.680105 GATTCGCCGCGAGAAAACGA 61.680 55.000 16.14 9.82 37.14 3.85
53 54 1.683790 ATTCGCCGCGAGAAAACGAG 61.684 55.000 16.14 0.00 37.14 4.18
56 57 3.838795 CCGCGAGAAAACGAGGCG 61.839 66.667 8.23 0.00 44.71 5.52
58 59 3.782042 GCGAGAAAACGAGGCGAT 58.218 55.556 0.00 0.00 35.09 4.58
59 60 1.345176 GCGAGAAAACGAGGCGATG 59.655 57.895 0.00 0.00 35.09 3.84
60 61 1.076533 GCGAGAAAACGAGGCGATGA 61.077 55.000 0.00 0.00 35.09 2.92
61 62 0.917259 CGAGAAAACGAGGCGATGAG 59.083 55.000 0.00 0.00 35.09 2.90
62 63 1.281899 GAGAAAACGAGGCGATGAGG 58.718 55.000 0.00 0.00 0.00 3.86
63 64 0.895530 AGAAAACGAGGCGATGAGGA 59.104 50.000 0.00 0.00 0.00 3.71
64 65 1.000145 GAAAACGAGGCGATGAGGAC 59.000 55.000 0.00 0.00 0.00 3.85
65 66 0.736325 AAAACGAGGCGATGAGGACG 60.736 55.000 0.00 0.00 0.00 4.79
66 67 1.592400 AAACGAGGCGATGAGGACGA 61.592 55.000 0.00 0.00 0.00 4.20
67 68 2.024871 CGAGGCGATGAGGACGAC 59.975 66.667 0.00 0.00 39.24 4.34
68 69 2.024871 GAGGCGATGAGGACGACG 59.975 66.667 0.00 0.00 44.04 5.12
69 70 2.437895 AGGCGATGAGGACGACGA 60.438 61.111 0.00 0.00 44.04 4.20
70 71 1.989966 GAGGCGATGAGGACGACGAA 61.990 60.000 0.00 0.00 44.04 3.85
71 72 1.586564 GGCGATGAGGACGACGAAG 60.587 63.158 0.00 0.00 0.00 3.79
72 73 2.224885 GCGATGAGGACGACGAAGC 61.225 63.158 0.00 0.00 0.00 3.86
73 74 1.934956 CGATGAGGACGACGAAGCG 60.935 63.158 0.00 0.00 37.29 4.68
74 75 1.586564 GATGAGGACGACGAAGCGG 60.587 63.158 0.00 0.00 35.12 5.52
75 76 3.701604 ATGAGGACGACGAAGCGGC 62.702 63.158 0.00 0.00 38.96 6.53
82 83 3.545911 GACGAAGCGGCGAGAAAA 58.454 55.556 12.98 0.00 34.83 2.29
83 84 1.416434 GACGAAGCGGCGAGAAAAG 59.584 57.895 12.98 0.00 34.83 2.27
84 85 1.006571 ACGAAGCGGCGAGAAAAGA 60.007 52.632 12.98 0.00 34.83 2.52
85 86 1.009389 ACGAAGCGGCGAGAAAAGAG 61.009 55.000 12.98 0.00 34.83 2.85
86 87 1.009389 CGAAGCGGCGAGAAAAGAGT 61.009 55.000 12.98 0.00 0.00 3.24
87 88 0.716666 GAAGCGGCGAGAAAAGAGTC 59.283 55.000 12.98 0.00 0.00 3.36
88 89 1.009389 AAGCGGCGAGAAAAGAGTCG 61.009 55.000 12.98 0.00 39.25 4.18
89 90 1.443872 GCGGCGAGAAAAGAGTCGA 60.444 57.895 12.98 0.00 38.50 4.20
90 91 1.406970 GCGGCGAGAAAAGAGTCGAG 61.407 60.000 12.98 0.00 38.50 4.04
91 92 0.109689 CGGCGAGAAAAGAGTCGAGT 60.110 55.000 0.00 0.00 38.50 4.18
92 93 1.619983 GGCGAGAAAAGAGTCGAGTC 58.380 55.000 12.54 12.54 38.50 3.36
93 94 1.068472 GGCGAGAAAAGAGTCGAGTCA 60.068 52.381 21.89 0.00 38.50 3.41
94 95 1.980156 GCGAGAAAAGAGTCGAGTCAC 59.020 52.381 21.89 10.09 38.50 3.67
95 96 2.350964 GCGAGAAAAGAGTCGAGTCACT 60.351 50.000 21.89 14.18 38.50 3.41
96 97 3.230355 CGAGAAAAGAGTCGAGTCACTG 58.770 50.000 21.89 1.33 38.50 3.66
97 98 3.058846 CGAGAAAAGAGTCGAGTCACTGA 60.059 47.826 21.89 0.00 38.50 3.41
98 99 4.223659 GAGAAAAGAGTCGAGTCACTGAC 58.776 47.826 21.89 0.38 35.33 3.51
99 100 2.690173 AAAGAGTCGAGTCACTGACG 57.310 50.000 21.89 0.00 40.05 4.35
100 101 0.238817 AAGAGTCGAGTCACTGACGC 59.761 55.000 21.89 3.20 40.05 5.19
129 130 2.642700 GGCTCTTCGCGCCAAAAA 59.357 55.556 0.00 0.00 46.77 1.94
161 162 3.771160 CTTCCGACCGACCCCCAG 61.771 72.222 0.00 0.00 0.00 4.45
184 185 2.047560 CGAGTTCGGGTTGGGTCC 60.048 66.667 0.00 0.00 35.37 4.46
186 187 4.324991 AGTTCGGGTTGGGTCCGC 62.325 66.667 0.00 0.00 46.43 5.54
218 219 4.103103 GCCTGAGCCGGCGAAAAC 62.103 66.667 23.20 8.55 40.79 2.43
219 220 2.358737 CCTGAGCCGGCGAAAACT 60.359 61.111 23.20 0.68 0.00 2.66
220 221 2.680913 CCTGAGCCGGCGAAAACTG 61.681 63.158 23.20 14.16 0.00 3.16
221 222 2.668212 TGAGCCGGCGAAAACTGG 60.668 61.111 23.20 0.00 39.28 4.00
222 223 3.431725 GAGCCGGCGAAAACTGGG 61.432 66.667 23.20 0.00 36.51 4.45
227 228 2.600470 GGCGAAAACTGGGCCCTT 60.600 61.111 25.70 8.87 41.01 3.95
228 229 2.650778 GCGAAAACTGGGCCCTTG 59.349 61.111 25.70 18.34 0.00 3.61
229 230 2.931068 GCGAAAACTGGGCCCTTGG 61.931 63.158 25.70 15.55 0.00 3.61
230 231 2.275380 CGAAAACTGGGCCCTTGGG 61.275 63.158 25.70 12.91 0.00 4.12
248 249 4.814294 GGCGCGACTGGACCGATT 62.814 66.667 12.10 0.00 0.00 3.34
249 250 2.813908 GCGCGACTGGACCGATTT 60.814 61.111 12.10 0.00 0.00 2.17
250 251 2.388232 GCGCGACTGGACCGATTTT 61.388 57.895 12.10 0.00 0.00 1.82
251 252 1.908066 GCGCGACTGGACCGATTTTT 61.908 55.000 12.10 0.00 0.00 1.94
277 278 3.810896 GCGGCCGAAAAATCGCCT 61.811 61.111 33.48 0.00 42.02 5.52
278 279 2.100216 CGGCCGAAAAATCGCCTG 59.900 61.111 24.07 0.00 0.00 4.85
279 280 2.489751 GGCCGAAAAATCGCCTGG 59.510 61.111 0.00 0.00 0.00 4.45
280 281 2.489751 GCCGAAAAATCGCCTGGG 59.510 61.111 0.00 0.00 0.00 4.45
281 282 3.063743 GCCGAAAAATCGCCTGGGG 62.064 63.158 4.03 4.03 0.00 4.96
282 283 2.414785 CCGAAAAATCGCCTGGGGG 61.415 63.158 11.17 0.78 0.00 5.40
313 314 4.218578 CGCGGCTGGAGATGCTCT 62.219 66.667 0.00 0.00 0.00 4.09
314 315 2.849964 CGCGGCTGGAGATGCTCTA 61.850 63.158 0.00 0.00 0.00 2.43
315 316 1.443407 GCGGCTGGAGATGCTCTAA 59.557 57.895 0.00 0.00 0.00 2.10
316 317 0.179073 GCGGCTGGAGATGCTCTAAA 60.179 55.000 0.00 0.00 0.00 1.85
317 318 1.863267 CGGCTGGAGATGCTCTAAAG 58.137 55.000 0.00 0.00 0.00 1.85
318 319 1.137872 CGGCTGGAGATGCTCTAAAGT 59.862 52.381 0.00 0.00 0.00 2.66
319 320 2.419297 CGGCTGGAGATGCTCTAAAGTT 60.419 50.000 0.00 0.00 0.00 2.66
320 321 2.941720 GGCTGGAGATGCTCTAAAGTTG 59.058 50.000 0.00 0.00 0.00 3.16
321 322 2.354199 GCTGGAGATGCTCTAAAGTTGC 59.646 50.000 0.00 0.00 0.00 4.17
322 323 3.871485 CTGGAGATGCTCTAAAGTTGCT 58.129 45.455 0.00 0.00 0.00 3.91
323 324 3.866651 TGGAGATGCTCTAAAGTTGCTC 58.133 45.455 0.00 0.00 0.00 4.26
324 325 3.517100 TGGAGATGCTCTAAAGTTGCTCT 59.483 43.478 0.00 0.00 0.00 4.09
325 326 3.870419 GGAGATGCTCTAAAGTTGCTCTG 59.130 47.826 0.00 0.00 0.00 3.35
326 327 4.382470 GGAGATGCTCTAAAGTTGCTCTGA 60.382 45.833 0.00 0.00 0.00 3.27
327 328 5.157940 AGATGCTCTAAAGTTGCTCTGAA 57.842 39.130 0.00 0.00 0.00 3.02
328 329 5.555017 AGATGCTCTAAAGTTGCTCTGAAA 58.445 37.500 0.00 0.00 0.00 2.69
329 330 6.179040 AGATGCTCTAAAGTTGCTCTGAAAT 58.821 36.000 0.00 0.00 0.00 2.17
330 331 5.618056 TGCTCTAAAGTTGCTCTGAAATG 57.382 39.130 0.00 0.00 0.00 2.32
331 332 5.308014 TGCTCTAAAGTTGCTCTGAAATGA 58.692 37.500 0.00 0.00 0.00 2.57
332 333 5.410746 TGCTCTAAAGTTGCTCTGAAATGAG 59.589 40.000 0.00 0.00 37.16 2.90
333 334 5.641209 GCTCTAAAGTTGCTCTGAAATGAGA 59.359 40.000 0.00 0.00 36.23 3.27
334 335 6.183360 GCTCTAAAGTTGCTCTGAAATGAGAG 60.183 42.308 0.00 0.00 42.24 3.20
335 336 6.169094 TCTAAAGTTGCTCTGAAATGAGAGG 58.831 40.000 0.00 0.00 40.04 3.69
336 337 4.630644 AAGTTGCTCTGAAATGAGAGGA 57.369 40.909 0.00 0.00 40.04 3.71
337 338 4.840716 AGTTGCTCTGAAATGAGAGGAT 57.159 40.909 0.00 0.00 39.84 3.24
338 339 5.946942 AGTTGCTCTGAAATGAGAGGATA 57.053 39.130 0.00 0.00 39.84 2.59
339 340 6.305272 AGTTGCTCTGAAATGAGAGGATAA 57.695 37.500 0.00 0.00 39.84 1.75
340 341 6.347696 AGTTGCTCTGAAATGAGAGGATAAG 58.652 40.000 0.00 0.00 39.84 1.73
341 342 5.287674 TGCTCTGAAATGAGAGGATAAGG 57.712 43.478 0.00 0.00 40.04 2.69
342 343 4.718774 TGCTCTGAAATGAGAGGATAAGGT 59.281 41.667 0.00 0.00 40.04 3.50
343 344 5.899547 TGCTCTGAAATGAGAGGATAAGGTA 59.100 40.000 0.00 0.00 40.04 3.08
344 345 6.384015 TGCTCTGAAATGAGAGGATAAGGTAA 59.616 38.462 0.00 0.00 40.04 2.85
345 346 7.092891 TGCTCTGAAATGAGAGGATAAGGTAAA 60.093 37.037 0.00 0.00 40.04 2.01
346 347 7.440856 GCTCTGAAATGAGAGGATAAGGTAAAG 59.559 40.741 0.00 0.00 40.04 1.85
347 348 8.380742 TCTGAAATGAGAGGATAAGGTAAAGT 57.619 34.615 0.00 0.00 0.00 2.66
348 349 8.260818 TCTGAAATGAGAGGATAAGGTAAAGTG 58.739 37.037 0.00 0.00 0.00 3.16
349 350 8.146053 TGAAATGAGAGGATAAGGTAAAGTGA 57.854 34.615 0.00 0.00 0.00 3.41
350 351 8.772250 TGAAATGAGAGGATAAGGTAAAGTGAT 58.228 33.333 0.00 0.00 0.00 3.06
353 354 9.440761 AATGAGAGGATAAGGTAAAGTGATACT 57.559 33.333 0.00 0.00 0.00 2.12
354 355 8.466617 TGAGAGGATAAGGTAAAGTGATACTC 57.533 38.462 0.00 0.00 0.00 2.59
355 356 8.282982 TGAGAGGATAAGGTAAAGTGATACTCT 58.717 37.037 0.00 0.00 39.95 3.24
356 357 9.138596 GAGAGGATAAGGTAAAGTGATACTCTT 57.861 37.037 0.00 0.00 37.84 2.85
357 358 9.495382 AGAGGATAAGGTAAAGTGATACTCTTT 57.505 33.333 0.00 0.00 34.74 2.52
362 363 9.780186 ATAAGGTAAAGTGATACTCTTTATGCC 57.220 33.333 0.00 0.00 38.85 4.40
363 364 6.592870 AGGTAAAGTGATACTCTTTATGCCC 58.407 40.000 0.00 0.00 38.85 5.36
364 365 6.387220 AGGTAAAGTGATACTCTTTATGCCCT 59.613 38.462 0.00 0.00 38.85 5.19
365 366 6.483640 GGTAAAGTGATACTCTTTATGCCCTG 59.516 42.308 0.00 0.00 38.85 4.45
372 373 2.034843 TTTATGCCCTGGCGTGCA 59.965 55.556 13.14 2.82 45.51 4.57
373 374 1.996786 CTTTATGCCCTGGCGTGCAG 61.997 60.000 13.14 4.91 45.51 4.41
404 405 6.006449 CCAGGTAGCTAAATGGAATAAGCAT 58.994 40.000 17.03 0.00 37.78 3.79
423 424 3.055963 GCATCTCCCAGATCGATCTCAAT 60.056 47.826 25.00 10.98 31.32 2.57
424 425 4.496360 CATCTCCCAGATCGATCTCAATG 58.504 47.826 25.00 17.71 31.32 2.82
437 438 7.170393 TCGATCTCAATGAGTCCTAGAAAAA 57.830 36.000 10.36 0.00 0.00 1.94
438 439 7.261325 TCGATCTCAATGAGTCCTAGAAAAAG 58.739 38.462 10.36 0.00 0.00 2.27
439 440 6.478344 CGATCTCAATGAGTCCTAGAAAAAGG 59.522 42.308 10.36 0.00 38.06 3.11
446 447 2.970640 AGTCCTAGAAAAAGGGTCACGT 59.029 45.455 0.00 0.00 37.24 4.49
451 452 5.070847 TCCTAGAAAAAGGGTCACGTAAACT 59.929 40.000 0.00 0.00 37.24 2.66
461 462 4.931002 GGGTCACGTAAACTAAGCATTGTA 59.069 41.667 0.00 0.00 0.00 2.41
477 478 5.404066 AGCATTGTAATGTTTAAACAACCGC 59.596 36.000 23.97 18.37 43.03 5.68
625 639 2.380084 AAGTGTACGCATGTGTAGGG 57.620 50.000 19.18 0.00 0.00 3.53
629 643 3.068560 GTGTACGCATGTGTAGGGAAAA 58.931 45.455 19.18 0.00 0.00 2.29
655 669 5.536161 AGGAACAGCAATGTGAACAATAAGT 59.464 36.000 0.00 0.00 0.00 2.24
656 670 6.714810 AGGAACAGCAATGTGAACAATAAGTA 59.285 34.615 0.00 0.00 0.00 2.24
658 672 7.538678 GGAACAGCAATGTGAACAATAAGTAAG 59.461 37.037 0.00 0.00 0.00 2.34
659 673 6.381801 ACAGCAATGTGAACAATAAGTAAGC 58.618 36.000 0.00 0.00 0.00 3.09
660 674 6.207417 ACAGCAATGTGAACAATAAGTAAGCT 59.793 34.615 0.00 0.00 0.00 3.74
661 675 7.390440 ACAGCAATGTGAACAATAAGTAAGCTA 59.610 33.333 0.00 0.00 0.00 3.32
662 676 8.236586 CAGCAATGTGAACAATAAGTAAGCTAA 58.763 33.333 0.00 0.00 0.00 3.09
663 677 8.792633 AGCAATGTGAACAATAAGTAAGCTAAA 58.207 29.630 0.00 0.00 0.00 1.85
664 678 8.850452 GCAATGTGAACAATAAGTAAGCTAAAC 58.150 33.333 0.00 0.00 0.00 2.01
665 679 9.051027 CAATGTGAACAATAAGTAAGCTAAACG 57.949 33.333 0.00 0.00 0.00 3.60
710 729 0.320050 TCCTATGCGTGCACAACTGA 59.680 50.000 18.64 2.18 0.00 3.41
740 765 2.363306 TTGGTTGATGCCTGTCAAGT 57.637 45.000 0.00 0.00 38.68 3.16
827 856 3.412386 ACAGATTCCTGGAACGGAAAAG 58.588 45.455 12.11 0.77 44.60 2.27
847 876 0.251922 ACCATGCCAATTGCCAGAGT 60.252 50.000 0.00 0.00 40.16 3.24
885 914 0.614134 TTGCCAATGCCATGCAGGTA 60.614 50.000 0.00 0.00 43.65 3.08
891 920 0.178981 ATGCCATGCAGGTACATCCC 60.179 55.000 0.00 0.00 43.65 3.85
897 926 2.417516 CAGGTACATCCCTCCGCG 59.582 66.667 0.00 0.00 36.75 6.46
938 967 0.823356 AGCCAACCACAACTTCGCAT 60.823 50.000 0.00 0.00 0.00 4.73
980 1014 3.745975 CCAGCTTCTTCGTGTTCATGTTA 59.254 43.478 0.00 0.00 0.00 2.41
990 1024 4.876679 TCGTGTTCATGTTACAGTTTTCCA 59.123 37.500 4.10 0.00 0.00 3.53
1027 1062 0.673437 GCAAGGCAGCAACCAAGTAA 59.327 50.000 0.00 0.00 0.00 2.24
1038 1073 2.890311 CAACCAAGTAACAGCATCCCAA 59.110 45.455 0.00 0.00 0.00 4.12
1042 1083 3.573967 CCAAGTAACAGCATCCCAAAGTT 59.426 43.478 0.00 0.00 0.00 2.66
1104 1145 1.140312 AGCACCCTCCTTCAACTTCA 58.860 50.000 0.00 0.00 0.00 3.02
1555 1690 1.001974 GTAGTGTCTGCACCCATGTCA 59.998 52.381 0.00 0.00 46.35 3.58
1589 1724 2.125147 CTTCGCCGATGCCTTCCA 60.125 61.111 0.00 0.00 0.00 3.53
1671 1887 0.671781 ACGAGGTGTTGATGCTGCTC 60.672 55.000 0.00 0.00 0.00 4.26
1895 2168 3.173151 TGAGCAGGACCATCTCTGTAAA 58.827 45.455 12.43 0.00 33.81 2.01
2080 2407 2.845345 AAGGAGGGCAGTTGGGGTG 61.845 63.158 0.00 0.00 0.00 4.61
2082 2409 2.352805 GAGGGCAGTTGGGGTGAG 59.647 66.667 0.00 0.00 0.00 3.51
2131 2458 4.778534 ACTTCACAATGGCTGAAGAATG 57.221 40.909 17.89 0.00 45.15 2.67
2197 2533 6.650239 ACGCAATCACGTATGTATTGTTAA 57.350 33.333 13.82 0.00 46.19 2.01
2224 2567 0.600557 TTGGCAAATTACCACTGGCG 59.399 50.000 0.00 0.00 36.76 5.69
2295 2656 4.843728 CAACTACCAGGGATACACAACAT 58.156 43.478 0.00 0.00 39.74 2.71
2547 2908 4.610333 TGGTTCAGAGTAGATTCCTGCTA 58.390 43.478 0.00 0.00 35.42 3.49
3255 3858 2.767505 TCTGAAGAAAAGGACCTTCGC 58.232 47.619 7.34 2.64 41.10 4.70
3442 4048 3.349927 TCCACTTCATTCATGGCTTCTG 58.650 45.455 0.00 0.00 33.20 3.02
3492 4098 0.751643 ACACCCACAAGTTGCCACTC 60.752 55.000 1.81 0.00 30.45 3.51
3513 4119 0.316204 GGCCAATGCATACTGCCATC 59.684 55.000 22.38 2.80 44.23 3.51
3540 4146 2.019984 GACATGATGGGTCTCCTTTGC 58.980 52.381 0.00 0.00 32.54 3.68
3612 4218 0.389166 CTCTGGTCGTTCCTGTGCTC 60.389 60.000 0.00 0.00 36.66 4.26
3695 4302 2.679059 CGAAGATGCCTCATGACCAACT 60.679 50.000 0.00 0.00 0.00 3.16
3712 4319 5.123227 ACCAACTATCCCAACAATATGTCG 58.877 41.667 0.00 0.00 0.00 4.35
3716 4323 4.574828 ACTATCCCAACAATATGTCGCAAC 59.425 41.667 0.00 0.00 0.00 4.17
3735 4342 1.450134 GGAGATGCCGCATGTGACA 60.450 57.895 11.49 1.84 0.00 3.58
3740 4347 2.145536 GATGCCGCATGTGACATGATA 58.854 47.619 28.21 11.12 0.00 2.15
3749 4356 5.983118 CGCATGTGACATGATACTTTACCTA 59.017 40.000 28.21 0.00 0.00 3.08
3755 4362 9.787435 TGTGACATGATACTTTACCTAGTTTTT 57.213 29.630 0.00 0.00 0.00 1.94
3816 4424 6.748333 ACATGTACTTTCCAATGATGTCTG 57.252 37.500 0.00 0.00 0.00 3.51
3817 4425 6.240894 ACATGTACTTTCCAATGATGTCTGT 58.759 36.000 0.00 0.00 0.00 3.41
3911 4519 7.910162 CCATTGTGTACAACTATTGACTATTGC 59.090 37.037 0.00 0.00 38.86 3.56
3933 4541 5.418524 TGCCATATATTGTCAAACACTGCTT 59.581 36.000 0.00 0.00 0.00 3.91
3975 4583 3.450457 AGTGTTTTCATTGGTCCAAGCAA 59.550 39.130 10.72 2.30 40.12 3.91
4005 4620 5.461078 GCATCTTTATGGTTGCAATTGCTAG 59.539 40.000 29.37 9.88 36.39 3.42
4006 4621 4.997565 TCTTTATGGTTGCAATTGCTAGC 58.002 39.130 29.05 29.05 42.80 3.42
4013 4628 4.248058 GGTTGCAATTGCTAGCATTCTTT 58.752 39.130 30.17 7.52 42.24 2.52
4014 4629 5.047448 TGGTTGCAATTGCTAGCATTCTTTA 60.047 36.000 32.69 15.54 45.88 1.85
4045 4665 8.430063 CAATTTTTGCATCTCTGTATGTTTCAC 58.570 33.333 0.00 0.00 0.00 3.18
4142 4762 6.313519 TGAAGTTCATATCTTAGTTGGCCT 57.686 37.500 3.32 0.00 0.00 5.19
4183 4803 1.765904 TGTTGTCAGCACCTGGTTCTA 59.234 47.619 0.00 0.00 31.51 2.10
4188 4808 2.744202 GTCAGCACCTGGTTCTAATGTG 59.256 50.000 0.00 0.00 31.51 3.21
4223 4843 5.003804 GGCCAACTAAGAGATGAACTTCAA 58.996 41.667 0.00 0.00 0.00 2.69
4231 4851 3.823304 AGAGATGAACTTCAAAAGCACCC 59.177 43.478 0.00 0.00 0.00 4.61
4232 4852 2.893489 AGATGAACTTCAAAAGCACCCC 59.107 45.455 0.00 0.00 0.00 4.95
4233 4853 2.151502 TGAACTTCAAAAGCACCCCA 57.848 45.000 0.00 0.00 0.00 4.96
4234 4854 2.031120 TGAACTTCAAAAGCACCCCAG 58.969 47.619 0.00 0.00 0.00 4.45
4235 4855 0.752658 AACTTCAAAAGCACCCCAGC 59.247 50.000 0.00 0.00 0.00 4.85
4283 4912 4.569966 AGCAAGTCGATGAGCTAAAGAATG 59.430 41.667 6.66 0.00 35.19 2.67
4285 4914 4.065321 AGTCGATGAGCTAAAGAATGGG 57.935 45.455 0.00 0.00 0.00 4.00
4286 4915 3.706594 AGTCGATGAGCTAAAGAATGGGA 59.293 43.478 0.00 0.00 0.00 4.37
4287 4916 4.054671 GTCGATGAGCTAAAGAATGGGAG 58.945 47.826 0.00 0.00 0.00 4.30
4288 4917 3.070159 TCGATGAGCTAAAGAATGGGAGG 59.930 47.826 0.00 0.00 0.00 4.30
4289 4918 3.181461 CGATGAGCTAAAGAATGGGAGGT 60.181 47.826 0.00 0.00 0.00 3.85
4290 4919 4.684485 CGATGAGCTAAAGAATGGGAGGTT 60.684 45.833 0.00 0.00 0.00 3.50
4291 4920 5.453339 CGATGAGCTAAAGAATGGGAGGTTA 60.453 44.000 0.00 0.00 0.00 2.85
4292 4921 5.975988 TGAGCTAAAGAATGGGAGGTTAT 57.024 39.130 0.00 0.00 0.00 1.89
4293 4922 5.684704 TGAGCTAAAGAATGGGAGGTTATG 58.315 41.667 0.00 0.00 0.00 1.90
4294 4923 5.191722 TGAGCTAAAGAATGGGAGGTTATGT 59.808 40.000 0.00 0.00 0.00 2.29
4295 4924 5.440610 AGCTAAAGAATGGGAGGTTATGTG 58.559 41.667 0.00 0.00 0.00 3.21
4296 4925 4.036852 GCTAAAGAATGGGAGGTTATGTGC 59.963 45.833 0.00 0.00 0.00 4.57
4297 4926 3.737559 AAGAATGGGAGGTTATGTGCA 57.262 42.857 0.00 0.00 0.00 4.57
4298 4927 3.737559 AGAATGGGAGGTTATGTGCAA 57.262 42.857 0.00 0.00 0.00 4.08
4299 4928 4.046286 AGAATGGGAGGTTATGTGCAAA 57.954 40.909 0.00 0.00 0.00 3.68
4300 4929 3.763897 AGAATGGGAGGTTATGTGCAAAC 59.236 43.478 0.00 0.00 0.00 2.93
4301 4930 2.666272 TGGGAGGTTATGTGCAAACA 57.334 45.000 2.40 0.00 0.00 2.83
4302 4931 2.950781 TGGGAGGTTATGTGCAAACAA 58.049 42.857 2.40 0.00 0.00 2.83
4303 4932 2.890311 TGGGAGGTTATGTGCAAACAAG 59.110 45.455 2.40 0.00 0.00 3.16
4304 4933 3.153919 GGGAGGTTATGTGCAAACAAGA 58.846 45.455 2.40 0.00 0.00 3.02
4305 4934 3.057526 GGGAGGTTATGTGCAAACAAGAC 60.058 47.826 2.40 0.00 0.00 3.01
4306 4935 3.057526 GGAGGTTATGTGCAAACAAGACC 60.058 47.826 2.40 3.89 0.00 3.85
4307 4936 3.561143 AGGTTATGTGCAAACAAGACCA 58.439 40.909 13.23 0.00 33.69 4.02
4308 4937 4.151883 AGGTTATGTGCAAACAAGACCAT 58.848 39.130 13.23 2.50 33.69 3.55
4309 4938 4.588528 AGGTTATGTGCAAACAAGACCATT 59.411 37.500 13.23 0.00 33.69 3.16
4310 4939 5.070313 AGGTTATGTGCAAACAAGACCATTT 59.930 36.000 13.23 0.00 33.69 2.32
4311 4940 5.405269 GGTTATGTGCAAACAAGACCATTTC 59.595 40.000 2.40 0.00 32.43 2.17
4312 4941 4.669206 ATGTGCAAACAAGACCATTTCA 57.331 36.364 0.00 0.00 0.00 2.69
4313 4942 4.669206 TGTGCAAACAAGACCATTTCAT 57.331 36.364 0.00 0.00 0.00 2.57
4314 4943 5.781210 TGTGCAAACAAGACCATTTCATA 57.219 34.783 0.00 0.00 0.00 2.15
4315 4944 6.343716 TGTGCAAACAAGACCATTTCATAT 57.656 33.333 0.00 0.00 0.00 1.78
4316 4945 6.757237 TGTGCAAACAAGACCATTTCATATT 58.243 32.000 0.00 0.00 0.00 1.28
4317 4946 7.890515 TGTGCAAACAAGACCATTTCATATTA 58.109 30.769 0.00 0.00 0.00 0.98
4318 4947 8.363390 TGTGCAAACAAGACCATTTCATATTAA 58.637 29.630 0.00 0.00 0.00 1.40
4319 4948 9.202273 GTGCAAACAAGACCATTTCATATTAAA 57.798 29.630 0.00 0.00 0.00 1.52
4320 4949 9.202273 TGCAAACAAGACCATTTCATATTAAAC 57.798 29.630 0.00 0.00 0.00 2.01
4321 4950 9.202273 GCAAACAAGACCATTTCATATTAAACA 57.798 29.630 0.00 0.00 0.00 2.83
4333 4962 8.572828 TTTCATATTAAACACTTGCAGTTGTG 57.427 30.769 12.81 12.81 39.80 3.33
4347 4976 1.073284 AGTTGTGCCCGACTAAACCAT 59.927 47.619 0.00 0.00 33.31 3.55
4360 4989 5.523916 CGACTAAACCATATTGCTGCTACTT 59.476 40.000 0.00 0.00 0.00 2.24
4361 4990 6.292381 CGACTAAACCATATTGCTGCTACTTC 60.292 42.308 0.00 0.00 0.00 3.01
4362 4991 6.414732 ACTAAACCATATTGCTGCTACTTCA 58.585 36.000 0.00 0.00 0.00 3.02
4363 4992 5.824904 AAACCATATTGCTGCTACTTCAG 57.175 39.130 0.00 0.00 37.15 3.02
4365 4994 3.200825 ACCATATTGCTGCTACTTCAGGT 59.799 43.478 0.00 0.00 34.74 4.00
4366 4995 4.408921 ACCATATTGCTGCTACTTCAGGTA 59.591 41.667 0.00 0.00 34.74 3.08
4367 4996 5.104527 ACCATATTGCTGCTACTTCAGGTAA 60.105 40.000 0.00 0.00 34.74 2.85
4409 7131 5.965922 AGTGAATTTAATTAGCTTGTGGCC 58.034 37.500 0.00 0.00 43.05 5.36
4504 8005 6.855763 TCCATATCAAAAACAAGAATGGCT 57.144 33.333 0.00 0.00 33.87 4.75
4591 8093 4.643334 GGTACAAGGTGTTTCTCAGGTTTT 59.357 41.667 0.00 0.00 0.00 2.43
4599 8101 8.567285 AGGTGTTTCTCAGGTTTTAGATATTG 57.433 34.615 0.00 0.00 0.00 1.90
4603 8105 8.717821 TGTTTCTCAGGTTTTAGATATTGTTCG 58.282 33.333 0.00 0.00 0.00 3.95
4615 8117 6.893958 AGATATTGTTCGATGAGTTCACAC 57.106 37.500 0.00 0.00 0.00 3.82
4627 8129 1.486310 AGTTCACACAGAGCCAAGACA 59.514 47.619 0.00 0.00 0.00 3.41
4632 8134 1.271054 ACACAGAGCCAAGACATCCAC 60.271 52.381 0.00 0.00 0.00 4.02
4637 8139 2.158842 AGAGCCAAGACATCCACTATGC 60.159 50.000 0.00 0.00 39.39 3.14
4644 8146 5.359009 CCAAGACATCCACTATGCAGATTTT 59.641 40.000 0.00 0.00 39.39 1.82
4645 8147 6.459298 CCAAGACATCCACTATGCAGATTTTC 60.459 42.308 0.00 0.00 39.39 2.29
4682 8184 9.745018 AAATTCAGAAAGAGATGATAAGAACCA 57.255 29.630 0.00 0.00 0.00 3.67
4683 8185 8.729805 ATTCAGAAAGAGATGATAAGAACCAC 57.270 34.615 0.00 0.00 0.00 4.16
4734 8236 8.049117 TCAAAATAGAGAATGCTAGTGGACAAT 58.951 33.333 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.940519 TCAATGCAAAAGCTGTGCGC 60.941 50.000 15.70 0.00 45.27 6.09
16 17 1.705256 ATCAATGCAAAAGCTGTGCG 58.295 45.000 15.70 4.48 45.27 5.34
17 18 2.091588 CGAATCAATGCAAAAGCTGTGC 59.908 45.455 14.30 14.30 42.55 4.57
18 19 2.091588 GCGAATCAATGCAAAAGCTGTG 59.908 45.455 0.00 0.00 0.00 3.66
19 20 2.331194 GCGAATCAATGCAAAAGCTGT 58.669 42.857 0.00 0.00 0.00 4.40
20 21 1.657094 GGCGAATCAATGCAAAAGCTG 59.343 47.619 0.00 0.00 0.00 4.24
21 22 1.733389 CGGCGAATCAATGCAAAAGCT 60.733 47.619 0.00 0.00 0.00 3.74
22 23 0.641783 CGGCGAATCAATGCAAAAGC 59.358 50.000 0.00 0.00 0.00 3.51
23 24 0.641783 GCGGCGAATCAATGCAAAAG 59.358 50.000 12.98 0.00 0.00 2.27
24 25 1.069924 CGCGGCGAATCAATGCAAAA 61.070 50.000 19.16 0.00 0.00 2.44
25 26 1.513800 CGCGGCGAATCAATGCAAA 60.514 52.632 19.16 0.00 0.00 3.68
26 27 2.100023 CGCGGCGAATCAATGCAA 59.900 55.556 19.16 0.00 0.00 4.08
27 28 2.812122 CTCGCGGCGAATCAATGCA 61.812 57.895 26.28 0.11 34.74 3.96
28 29 2.035617 TTCTCGCGGCGAATCAATGC 62.036 55.000 26.28 0.00 34.74 3.56
29 30 0.373370 TTTCTCGCGGCGAATCAATG 59.627 50.000 26.28 13.29 34.74 2.82
30 31 1.083489 TTTTCTCGCGGCGAATCAAT 58.917 45.000 26.28 0.00 34.74 2.57
31 32 0.165079 GTTTTCTCGCGGCGAATCAA 59.835 50.000 26.28 15.57 34.74 2.57
32 33 1.785321 GTTTTCTCGCGGCGAATCA 59.215 52.632 26.28 10.26 34.74 2.57
33 34 1.295930 CGTTTTCTCGCGGCGAATC 60.296 57.895 26.28 9.72 34.74 2.52
34 35 1.683790 CTCGTTTTCTCGCGGCGAAT 61.684 55.000 26.28 0.00 34.74 3.34
35 36 2.354891 TCGTTTTCTCGCGGCGAA 60.355 55.556 26.28 14.07 34.74 4.70
36 37 2.803670 CTCGTTTTCTCGCGGCGA 60.804 61.111 24.84 24.84 0.00 5.54
37 38 3.838795 CCTCGTTTTCTCGCGGCG 61.839 66.667 17.70 17.70 0.00 6.46
39 40 3.838795 CGCCTCGTTTTCTCGCGG 61.839 66.667 6.13 0.00 39.20 6.46
40 41 2.158959 ATCGCCTCGTTTTCTCGCG 61.159 57.895 0.00 0.00 44.00 5.87
41 42 1.076533 TCATCGCCTCGTTTTCTCGC 61.077 55.000 0.00 0.00 0.00 5.03
42 43 0.917259 CTCATCGCCTCGTTTTCTCG 59.083 55.000 0.00 0.00 0.00 4.04
43 44 1.135083 TCCTCATCGCCTCGTTTTCTC 60.135 52.381 0.00 0.00 0.00 2.87
44 45 0.895530 TCCTCATCGCCTCGTTTTCT 59.104 50.000 0.00 0.00 0.00 2.52
45 46 1.000145 GTCCTCATCGCCTCGTTTTC 59.000 55.000 0.00 0.00 0.00 2.29
46 47 0.736325 CGTCCTCATCGCCTCGTTTT 60.736 55.000 0.00 0.00 0.00 2.43
47 48 1.153823 CGTCCTCATCGCCTCGTTT 60.154 57.895 0.00 0.00 0.00 3.60
48 49 2.044555 TCGTCCTCATCGCCTCGTT 61.045 57.895 0.00 0.00 0.00 3.85
49 50 2.437895 TCGTCCTCATCGCCTCGT 60.438 61.111 0.00 0.00 0.00 4.18
50 51 2.024871 GTCGTCCTCATCGCCTCG 59.975 66.667 0.00 0.00 0.00 4.63
51 52 1.989966 TTCGTCGTCCTCATCGCCTC 61.990 60.000 0.00 0.00 0.00 4.70
52 53 1.994507 CTTCGTCGTCCTCATCGCCT 61.995 60.000 0.00 0.00 0.00 5.52
53 54 1.586564 CTTCGTCGTCCTCATCGCC 60.587 63.158 0.00 0.00 0.00 5.54
54 55 2.224885 GCTTCGTCGTCCTCATCGC 61.225 63.158 0.00 0.00 0.00 4.58
55 56 1.934956 CGCTTCGTCGTCCTCATCG 60.935 63.158 0.00 0.00 0.00 3.84
56 57 1.586564 CCGCTTCGTCGTCCTCATC 60.587 63.158 0.00 0.00 0.00 2.92
57 58 2.490217 CCGCTTCGTCGTCCTCAT 59.510 61.111 0.00 0.00 0.00 2.90
58 59 4.415332 GCCGCTTCGTCGTCCTCA 62.415 66.667 0.00 0.00 0.00 3.86
62 63 3.940975 TTCTCGCCGCTTCGTCGTC 62.941 63.158 0.00 0.00 0.00 4.20
63 64 3.547249 TTTCTCGCCGCTTCGTCGT 62.547 57.895 0.00 0.00 0.00 4.34
64 65 2.267227 CTTTTCTCGCCGCTTCGTCG 62.267 60.000 0.00 0.00 0.00 5.12
65 66 1.007336 TCTTTTCTCGCCGCTTCGTC 61.007 55.000 0.00 0.00 0.00 4.20
66 67 1.006571 TCTTTTCTCGCCGCTTCGT 60.007 52.632 0.00 0.00 0.00 3.85
67 68 1.009389 ACTCTTTTCTCGCCGCTTCG 61.009 55.000 0.00 0.00 0.00 3.79
68 69 0.716666 GACTCTTTTCTCGCCGCTTC 59.283 55.000 0.00 0.00 0.00 3.86
69 70 1.009389 CGACTCTTTTCTCGCCGCTT 61.009 55.000 0.00 0.00 0.00 4.68
70 71 1.444553 CGACTCTTTTCTCGCCGCT 60.445 57.895 0.00 0.00 0.00 5.52
71 72 1.406970 CTCGACTCTTTTCTCGCCGC 61.407 60.000 0.00 0.00 0.00 6.53
72 73 0.109689 ACTCGACTCTTTTCTCGCCG 60.110 55.000 0.00 0.00 0.00 6.46
73 74 1.068472 TGACTCGACTCTTTTCTCGCC 60.068 52.381 0.00 0.00 0.00 5.54
74 75 1.980156 GTGACTCGACTCTTTTCTCGC 59.020 52.381 0.00 0.00 0.00 5.03
75 76 3.058846 TCAGTGACTCGACTCTTTTCTCG 60.059 47.826 0.00 0.00 0.00 4.04
76 77 4.223659 GTCAGTGACTCGACTCTTTTCTC 58.776 47.826 16.26 0.00 0.00 2.87
77 78 3.304123 CGTCAGTGACTCGACTCTTTTCT 60.304 47.826 20.64 0.00 0.00 2.52
78 79 2.974536 CGTCAGTGACTCGACTCTTTTC 59.025 50.000 20.64 0.00 0.00 2.29
79 80 2.859032 GCGTCAGTGACTCGACTCTTTT 60.859 50.000 20.64 0.00 0.00 2.27
80 81 1.335142 GCGTCAGTGACTCGACTCTTT 60.335 52.381 20.64 0.00 0.00 2.52
81 82 0.238817 GCGTCAGTGACTCGACTCTT 59.761 55.000 20.64 0.00 0.00 2.85
82 83 1.870383 GCGTCAGTGACTCGACTCT 59.130 57.895 20.64 0.00 0.00 3.24
83 84 1.510204 CGCGTCAGTGACTCGACTC 60.510 63.158 27.17 6.22 42.32 3.36
84 85 2.556792 CGCGTCAGTGACTCGACT 59.443 61.111 27.17 0.00 42.32 4.18
85 86 2.502080 CCGCGTCAGTGACTCGAC 60.502 66.667 31.39 13.24 42.32 4.20
86 87 4.400109 GCCGCGTCAGTGACTCGA 62.400 66.667 31.39 0.00 42.32 4.04
144 145 3.771160 CTGGGGGTCGGTCGGAAG 61.771 72.222 0.00 0.00 0.00 3.46
167 168 2.047560 GGACCCAACCCGAACTCG 60.048 66.667 0.00 0.00 39.44 4.18
202 203 2.358737 AGTTTTCGCCGGCTCAGG 60.359 61.111 26.68 9.07 0.00 3.86
203 204 2.680913 CCAGTTTTCGCCGGCTCAG 61.681 63.158 26.68 9.50 0.00 3.35
204 205 2.668212 CCAGTTTTCGCCGGCTCA 60.668 61.111 26.68 8.05 0.00 4.26
205 206 3.431725 CCCAGTTTTCGCCGGCTC 61.432 66.667 26.68 9.45 0.00 4.70
210 211 2.600470 AAGGGCCCAGTTTTCGCC 60.600 61.111 27.56 0.00 42.23 5.54
211 212 2.650778 CAAGGGCCCAGTTTTCGC 59.349 61.111 27.56 0.00 0.00 4.70
212 213 2.275380 CCCAAGGGCCCAGTTTTCG 61.275 63.158 27.56 1.16 0.00 3.46
213 214 1.913262 CCCCAAGGGCCCAGTTTTC 60.913 63.158 27.56 0.00 35.35 2.29
214 215 2.204034 CCCCAAGGGCCCAGTTTT 59.796 61.111 27.56 6.31 35.35 2.43
231 232 4.814294 AATCGGTCCAGTCGCGCC 62.814 66.667 0.00 0.00 0.00 6.53
232 233 1.908066 AAAAATCGGTCCAGTCGCGC 61.908 55.000 0.00 0.00 0.00 6.86
233 234 2.159181 AAAAATCGGTCCAGTCGCG 58.841 52.632 0.00 0.00 0.00 5.87
264 265 2.414785 CCCCCAGGCGATTTTTCGG 61.415 63.158 0.00 0.00 0.00 4.30
265 266 3.196648 CCCCCAGGCGATTTTTCG 58.803 61.111 0.00 0.00 0.00 3.46
306 307 5.869753 TTTCAGAGCAACTTTAGAGCATC 57.130 39.130 0.00 0.00 0.00 3.91
307 308 5.942236 TCATTTCAGAGCAACTTTAGAGCAT 59.058 36.000 0.00 0.00 0.00 3.79
308 309 5.308014 TCATTTCAGAGCAACTTTAGAGCA 58.692 37.500 0.00 0.00 0.00 4.26
309 310 5.641209 TCTCATTTCAGAGCAACTTTAGAGC 59.359 40.000 0.00 0.00 35.59 4.09
310 311 6.313411 CCTCTCATTTCAGAGCAACTTTAGAG 59.687 42.308 0.00 0.00 38.98 2.43
311 312 6.014242 TCCTCTCATTTCAGAGCAACTTTAGA 60.014 38.462 0.00 0.00 38.98 2.10
312 313 6.169094 TCCTCTCATTTCAGAGCAACTTTAG 58.831 40.000 0.00 0.00 38.98 1.85
313 314 6.114187 TCCTCTCATTTCAGAGCAACTTTA 57.886 37.500 0.00 0.00 38.98 1.85
314 315 4.978099 TCCTCTCATTTCAGAGCAACTTT 58.022 39.130 0.00 0.00 38.98 2.66
315 316 4.630644 TCCTCTCATTTCAGAGCAACTT 57.369 40.909 0.00 0.00 38.98 2.66
316 317 4.840716 ATCCTCTCATTTCAGAGCAACT 57.159 40.909 0.00 0.00 38.98 3.16
317 318 5.526846 CCTTATCCTCTCATTTCAGAGCAAC 59.473 44.000 0.00 0.00 38.98 4.17
318 319 5.190528 ACCTTATCCTCTCATTTCAGAGCAA 59.809 40.000 0.00 0.00 38.98 3.91
319 320 4.718774 ACCTTATCCTCTCATTTCAGAGCA 59.281 41.667 0.00 0.00 38.98 4.26
320 321 5.289083 ACCTTATCCTCTCATTTCAGAGC 57.711 43.478 0.00 0.00 38.98 4.09
321 322 8.482128 ACTTTACCTTATCCTCTCATTTCAGAG 58.518 37.037 0.00 0.00 39.89 3.35
322 323 8.260818 CACTTTACCTTATCCTCTCATTTCAGA 58.739 37.037 0.00 0.00 0.00 3.27
323 324 8.260818 TCACTTTACCTTATCCTCTCATTTCAG 58.739 37.037 0.00 0.00 0.00 3.02
324 325 8.146053 TCACTTTACCTTATCCTCTCATTTCA 57.854 34.615 0.00 0.00 0.00 2.69
327 328 9.440761 AGTATCACTTTACCTTATCCTCTCATT 57.559 33.333 0.00 0.00 0.00 2.57
328 329 9.084533 GAGTATCACTTTACCTTATCCTCTCAT 57.915 37.037 0.00 0.00 33.17 2.90
329 330 8.282982 AGAGTATCACTTTACCTTATCCTCTCA 58.717 37.037 0.00 0.00 37.82 3.27
330 331 8.700439 AGAGTATCACTTTACCTTATCCTCTC 57.300 38.462 0.00 0.00 37.82 3.20
331 332 9.495382 AAAGAGTATCACTTTACCTTATCCTCT 57.505 33.333 0.00 0.00 37.82 3.69
336 337 9.780186 GGCATAAAGAGTATCACTTTACCTTAT 57.220 33.333 0.00 0.00 40.83 1.73
337 338 8.208903 GGGCATAAAGAGTATCACTTTACCTTA 58.791 37.037 0.00 0.00 40.83 2.69
338 339 7.054751 GGGCATAAAGAGTATCACTTTACCTT 58.945 38.462 0.00 0.00 40.83 3.50
339 340 6.387220 AGGGCATAAAGAGTATCACTTTACCT 59.613 38.462 0.00 0.00 40.83 3.08
340 341 6.483640 CAGGGCATAAAGAGTATCACTTTACC 59.516 42.308 0.00 0.00 40.83 2.85
341 342 6.483640 CCAGGGCATAAAGAGTATCACTTTAC 59.516 42.308 0.00 0.00 40.83 2.01
342 343 6.591935 CCAGGGCATAAAGAGTATCACTTTA 58.408 40.000 0.00 0.00 41.75 1.85
343 344 5.440610 CCAGGGCATAAAGAGTATCACTTT 58.559 41.667 0.00 0.00 40.13 2.66
344 345 4.687219 GCCAGGGCATAAAGAGTATCACTT 60.687 45.833 5.20 0.00 41.49 3.16
345 346 3.181450 GCCAGGGCATAAAGAGTATCACT 60.181 47.826 5.20 0.00 41.49 3.41
346 347 3.142174 GCCAGGGCATAAAGAGTATCAC 58.858 50.000 5.20 0.00 41.49 3.06
347 348 2.224281 CGCCAGGGCATAAAGAGTATCA 60.224 50.000 11.42 0.00 42.06 2.15
348 349 2.224305 ACGCCAGGGCATAAAGAGTATC 60.224 50.000 11.42 0.00 42.06 2.24
349 350 1.768870 ACGCCAGGGCATAAAGAGTAT 59.231 47.619 11.42 0.00 42.06 2.12
350 351 1.134521 CACGCCAGGGCATAAAGAGTA 60.135 52.381 11.42 0.00 42.06 2.59
351 352 0.392998 CACGCCAGGGCATAAAGAGT 60.393 55.000 11.42 0.00 42.06 3.24
352 353 2.397751 CACGCCAGGGCATAAAGAG 58.602 57.895 11.42 0.00 42.06 2.85
353 354 4.635769 CACGCCAGGGCATAAAGA 57.364 55.556 11.42 0.00 42.06 2.52
361 362 2.124570 ATTAGCTGCACGCCAGGG 60.125 61.111 1.02 0.00 42.03 4.45
362 363 3.104766 CATTAGCTGCACGCCAGG 58.895 61.111 1.02 0.00 42.03 4.45
373 374 3.503748 CCATTTAGCTACCTGGCATTAGC 59.496 47.826 16.66 16.66 40.98 3.09
381 382 6.939163 AGATGCTTATTCCATTTAGCTACCTG 59.061 38.462 0.00 0.00 34.77 4.00
404 405 3.825585 CTCATTGAGATCGATCTGGGAGA 59.174 47.826 31.88 20.80 37.25 3.71
423 424 3.006537 CGTGACCCTTTTTCTAGGACTCA 59.993 47.826 0.00 0.00 37.50 3.41
424 425 3.006644 ACGTGACCCTTTTTCTAGGACTC 59.993 47.826 0.00 0.00 37.50 3.36
437 438 3.975168 ATGCTTAGTTTACGTGACCCT 57.025 42.857 0.00 0.00 0.00 4.34
438 439 3.749609 ACAATGCTTAGTTTACGTGACCC 59.250 43.478 0.00 0.00 0.00 4.46
439 440 6.470557 TTACAATGCTTAGTTTACGTGACC 57.529 37.500 0.00 0.00 0.00 4.02
451 452 7.115095 GCGGTTGTTTAAACATTACAATGCTTA 59.885 33.333 21.17 0.00 40.04 3.09
461 462 6.422400 CCAAATAGTGCGGTTGTTTAAACATT 59.578 34.615 21.17 6.99 38.95 2.71
477 478 1.066257 GCATGCGGGCCAAATAGTG 59.934 57.895 4.39 0.00 0.00 2.74
498 499 4.916041 TCATCTCTGTCCCAAAGATGTT 57.084 40.909 7.27 0.00 44.33 2.71
499 500 5.901853 TCTATCATCTCTGTCCCAAAGATGT 59.098 40.000 7.27 0.04 44.33 3.06
502 503 8.733092 ATTATCTATCATCTCTGTCCCAAAGA 57.267 34.615 0.00 0.00 0.00 2.52
522 523 8.466086 AAAAACGCCTTGAAATCTTGATTATC 57.534 30.769 0.00 0.00 0.00 1.75
553 554 2.579873 ACTTGTTTCTCAGCACAGCAT 58.420 42.857 0.00 0.00 0.00 3.79
558 559 3.149436 TGCAAACTTGTTTCTCAGCAC 57.851 42.857 5.32 0.00 0.00 4.40
559 560 5.163571 TGTTATGCAAACTTGTTTCTCAGCA 60.164 36.000 10.04 10.04 35.03 4.41
560 561 5.280945 TGTTATGCAAACTTGTTTCTCAGC 58.719 37.500 11.34 0.00 0.00 4.26
561 562 7.754069 TTTGTTATGCAAACTTGTTTCTCAG 57.246 32.000 11.34 0.00 41.68 3.35
562 563 8.539770 TTTTTGTTATGCAAACTTGTTTCTCA 57.460 26.923 11.34 0.00 45.70 3.27
604 609 3.510753 TCCCTACACATGCGTACACTTTA 59.489 43.478 0.00 0.00 0.00 1.85
629 643 4.734398 TTGTTCACATTGCTGTTCCTTT 57.266 36.364 0.00 0.00 31.62 3.11
633 647 7.061094 GCTTACTTATTGTTCACATTGCTGTTC 59.939 37.037 0.00 0.00 31.62 3.18
635 649 6.207417 AGCTTACTTATTGTTCACATTGCTGT 59.793 34.615 0.00 0.00 35.44 4.40
655 669 3.319755 CACCCTTCGTTCGTTTAGCTTA 58.680 45.455 0.00 0.00 0.00 3.09
656 670 2.140717 CACCCTTCGTTCGTTTAGCTT 58.859 47.619 0.00 0.00 0.00 3.74
658 672 0.794473 CCACCCTTCGTTCGTTTAGC 59.206 55.000 0.00 0.00 0.00 3.09
659 673 0.794473 GCCACCCTTCGTTCGTTTAG 59.206 55.000 0.00 0.00 0.00 1.85
660 674 0.603439 GGCCACCCTTCGTTCGTTTA 60.603 55.000 0.00 0.00 0.00 2.01
661 675 1.895231 GGCCACCCTTCGTTCGTTT 60.895 57.895 0.00 0.00 0.00 3.60
662 676 2.281276 GGCCACCCTTCGTTCGTT 60.281 61.111 0.00 0.00 0.00 3.85
663 677 2.406002 ATTGGCCACCCTTCGTTCGT 62.406 55.000 3.88 0.00 0.00 3.85
664 678 0.391927 TATTGGCCACCCTTCGTTCG 60.392 55.000 3.88 0.00 0.00 3.95
665 679 1.379527 CTATTGGCCACCCTTCGTTC 58.620 55.000 3.88 0.00 0.00 3.95
718 737 1.452110 TGACAGGCATCAACCAATCG 58.548 50.000 0.00 0.00 0.00 3.34
740 765 2.584835 ACCAAGCTTGTATCTGGCAA 57.415 45.000 24.35 0.00 0.00 4.52
891 920 3.421826 CGTTTTTATATAGCTGCGCGGAG 60.422 47.826 24.50 24.50 0.00 4.63
897 926 5.613577 GCTGAGCTCGTTTTTATATAGCTGC 60.614 44.000 9.64 0.00 43.31 5.25
938 967 4.280494 GCCTTAGGCGGCGATCGA 62.280 66.667 21.57 0.00 39.62 3.59
959 993 3.885484 AACATGAACACGAAGAAGCTG 57.115 42.857 0.00 0.00 0.00 4.24
980 1014 4.262420 GCATATTTGGTGGTGGAAAACTGT 60.262 41.667 0.00 0.00 0.00 3.55
990 1024 1.185315 GCTGTGGCATATTTGGTGGT 58.815 50.000 0.00 0.00 38.54 4.16
1027 1062 2.564062 CCATTGAACTTTGGGATGCTGT 59.436 45.455 0.00 0.00 0.00 4.40
1038 1073 3.529533 CTGATCTCGCTCCATTGAACTT 58.470 45.455 0.00 0.00 0.00 2.66
1042 1083 0.105593 GGCTGATCTCGCTCCATTGA 59.894 55.000 7.36 0.00 0.00 2.57
1064 1105 3.420206 TTGCCCTCATCATCCCGGC 62.420 63.158 0.00 0.00 40.16 6.13
1066 1107 0.394216 TTGTTGCCCTCATCATCCCG 60.394 55.000 0.00 0.00 0.00 5.14
1071 1112 0.895100 GGTGCTTGTTGCCCTCATCA 60.895 55.000 0.00 0.00 42.00 3.07
1089 1130 3.245052 ACTCCATTGAAGTTGAAGGAGGG 60.245 47.826 17.89 3.34 45.29 4.30
1104 1145 1.065126 GCCTTCAGCTGGTACTCCATT 60.065 52.381 15.13 0.00 43.43 3.16
1356 1491 2.745884 CGCAGGACAATCGCCCAA 60.746 61.111 0.00 0.00 0.00 4.12
1555 1690 1.003233 GAAGACGGTTCCCCACTTCAT 59.997 52.381 0.00 0.00 40.48 2.57
1589 1724 5.131067 GTGTACTCTTGGGAAAAACCTTCT 58.869 41.667 0.00 0.00 38.98 2.85
1596 1731 4.781775 TCCTTGTGTACTCTTGGGAAAA 57.218 40.909 0.00 0.00 0.00 2.29
1720 1936 2.099652 CTGTCGCTCCAGAACCCACA 62.100 60.000 0.00 0.00 34.23 4.17
1825 2041 2.180769 CAGGGACGCGACGAATGA 59.819 61.111 15.93 0.00 0.00 2.57
1895 2168 0.460284 CCCATAGAGCGCGACAAACT 60.460 55.000 12.10 0.00 0.00 2.66
2080 2407 4.082354 ACGTATGGGTGTGAGTAGTTTCTC 60.082 45.833 0.00 0.00 35.28 2.87
2082 2409 4.171754 GACGTATGGGTGTGAGTAGTTTC 58.828 47.826 0.00 0.00 0.00 2.78
2196 2532 6.930722 CAGTGGTAATTTGCCAAAGAAGAATT 59.069 34.615 7.86 0.00 37.81 2.17
2197 2533 6.458210 CAGTGGTAATTTGCCAAAGAAGAAT 58.542 36.000 7.86 0.00 37.81 2.40
2204 2547 1.000283 CGCCAGTGGTAATTTGCCAAA 60.000 47.619 11.74 0.00 37.81 3.28
2224 2567 5.528690 TGCATCCTAGAGTTGAAATATGTGC 59.471 40.000 0.00 0.00 0.00 4.57
2295 2656 4.724399 TCCTTTCCAATACTTTGTCAGCA 58.276 39.130 0.00 0.00 0.00 4.41
2547 2908 0.179166 CGTGCAATGTATGGCGCTTT 60.179 50.000 7.64 0.00 38.34 3.51
2661 3022 2.552315 CACATACACAAGGACAACACCC 59.448 50.000 0.00 0.00 0.00 4.61
3255 3858 2.359214 TCCTAGCAGCATCAAGTACTCG 59.641 50.000 0.00 0.00 0.00 4.18
3336 3939 2.825532 GGTATGCCCATTGTTGTTGTCT 59.174 45.455 0.00 0.00 0.00 3.41
3369 3975 2.625314 TCTGTCGATGTCATGGAGGATC 59.375 50.000 0.00 0.00 0.00 3.36
3442 4048 1.585668 CAGCAAGATGATGACGACGAC 59.414 52.381 0.00 0.00 35.45 4.34
3513 4119 3.494048 GGAGACCCATCATGTCTAGCAAG 60.494 52.174 0.00 0.00 42.94 4.01
3531 4137 4.540153 GCATAGGCGCAAAGGAGA 57.460 55.556 10.83 0.00 0.00 3.71
3555 4161 0.551377 TCCCCCATTCCCTTGTGCTA 60.551 55.000 0.00 0.00 0.00 3.49
3612 4218 1.350193 CGTAGGCTGCAATATAGGCG 58.650 55.000 2.89 0.00 44.59 5.52
3695 4302 3.558006 CGTTGCGACATATTGTTGGGATA 59.442 43.478 4.64 0.00 32.39 2.59
3773 4380 8.565896 ACATGTAGAATTACACACACATCATT 57.434 30.769 0.00 0.00 42.29 2.57
3911 4519 6.748658 CACAAGCAGTGTTTGACAATATATGG 59.251 38.462 24.39 0.00 43.40 2.74
3933 4541 1.861542 CGAAATGAAAGCCCCGCACA 61.862 55.000 0.00 0.00 0.00 4.57
3937 4545 0.447801 CACTCGAAATGAAAGCCCCG 59.552 55.000 0.00 0.00 0.00 5.73
3975 4583 6.482898 TTGCAACCATAAAGATGCCAATAT 57.517 33.333 0.00 0.00 38.00 1.28
4076 4696 2.362077 ACACAGGATGCCAAGTTGAAAC 59.638 45.455 3.87 0.00 42.53 2.78
4117 4737 7.349598 AGGCCAACTAAGATATGAACTTCAAT 58.650 34.615 5.01 0.00 0.00 2.57
4136 4756 2.224744 TGAGTGCTTATGTTGAGGCCAA 60.225 45.455 5.01 0.00 0.00 4.52
4142 4762 6.822667 ACATTTGATGAGTGCTTATGTTGA 57.177 33.333 0.00 0.00 0.00 3.18
4202 4822 7.080724 GCTTTTGAAGTTCATCTCTTAGTTGG 58.919 38.462 6.36 0.00 0.00 3.77
4223 4843 3.984732 GGGAGGCTGGGGTGCTTT 61.985 66.667 0.00 0.00 0.00 3.51
4231 4851 0.607489 CACTTGAACTGGGAGGCTGG 60.607 60.000 0.00 0.00 0.00 4.85
4232 4852 0.607489 CCACTTGAACTGGGAGGCTG 60.607 60.000 0.00 0.00 0.00 4.85
4233 4853 1.062488 ACCACTTGAACTGGGAGGCT 61.062 55.000 0.00 0.00 32.45 4.58
4234 4854 0.178990 AACCACTTGAACTGGGAGGC 60.179 55.000 0.00 0.00 32.45 4.70
4235 4855 2.876079 GCTAACCACTTGAACTGGGAGG 60.876 54.545 0.00 0.00 32.45 4.30
4276 4905 4.046286 TGCACATAACCTCCCATTCTTT 57.954 40.909 0.00 0.00 0.00 2.52
4277 4906 3.737559 TGCACATAACCTCCCATTCTT 57.262 42.857 0.00 0.00 0.00 2.52
4283 4912 3.057526 GTCTTGTTTGCACATAACCTCCC 60.058 47.826 0.00 0.00 31.06 4.30
4285 4914 3.568007 TGGTCTTGTTTGCACATAACCTC 59.432 43.478 0.00 0.00 38.13 3.85
4286 4915 3.561143 TGGTCTTGTTTGCACATAACCT 58.439 40.909 0.00 0.00 38.13 3.50
4287 4916 4.519540 ATGGTCTTGTTTGCACATAACC 57.480 40.909 0.00 0.00 37.93 2.85
4288 4917 5.982516 TGAAATGGTCTTGTTTGCACATAAC 59.017 36.000 0.00 0.00 31.06 1.89
4289 4918 6.154203 TGAAATGGTCTTGTTTGCACATAA 57.846 33.333 0.00 0.00 31.06 1.90
4290 4919 5.781210 TGAAATGGTCTTGTTTGCACATA 57.219 34.783 0.00 0.00 31.06 2.29
4291 4920 4.669206 TGAAATGGTCTTGTTTGCACAT 57.331 36.364 0.00 0.00 31.06 3.21
4292 4921 4.669206 ATGAAATGGTCTTGTTTGCACA 57.331 36.364 0.00 0.00 0.00 4.57
4293 4922 8.755696 TTAATATGAAATGGTCTTGTTTGCAC 57.244 30.769 0.00 0.00 0.00 4.57
4294 4923 9.202273 GTTTAATATGAAATGGTCTTGTTTGCA 57.798 29.630 0.00 0.00 0.00 4.08
4295 4924 9.202273 TGTTTAATATGAAATGGTCTTGTTTGC 57.798 29.630 0.00 0.00 0.00 3.68
4299 4928 9.912634 CAAGTGTTTAATATGAAATGGTCTTGT 57.087 29.630 0.00 0.00 0.00 3.16
4300 4929 8.863049 GCAAGTGTTTAATATGAAATGGTCTTG 58.137 33.333 12.49 12.49 0.00 3.02
4301 4930 8.584157 TGCAAGTGTTTAATATGAAATGGTCTT 58.416 29.630 0.00 0.00 0.00 3.01
4302 4931 8.121305 TGCAAGTGTTTAATATGAAATGGTCT 57.879 30.769 0.00 0.00 0.00 3.85
4303 4932 8.398491 CTGCAAGTGTTTAATATGAAATGGTC 57.602 34.615 0.00 0.00 0.00 4.02
4322 4951 0.602638 TAGTCGGGCACAACTGCAAG 60.603 55.000 0.00 0.00 46.28 4.01
4333 4962 2.290641 CAGCAATATGGTTTAGTCGGGC 59.709 50.000 0.00 0.00 0.00 6.13
4337 4966 6.538742 TGAAGTAGCAGCAATATGGTTTAGTC 59.461 38.462 0.00 0.00 32.19 2.59
4340 4969 5.822519 CCTGAAGTAGCAGCAATATGGTTTA 59.177 40.000 0.00 0.00 34.56 2.01
4341 4970 4.641989 CCTGAAGTAGCAGCAATATGGTTT 59.358 41.667 0.00 0.00 34.56 3.27
4347 4976 5.932619 TCTTACCTGAAGTAGCAGCAATA 57.067 39.130 0.00 0.00 36.45 1.90
4360 4989 4.764050 TTGTGAACCACTTCTTACCTGA 57.236 40.909 0.00 0.00 35.11 3.86
4361 4990 5.530915 TCATTTGTGAACCACTTCTTACCTG 59.469 40.000 0.00 0.00 35.11 4.00
4362 4991 5.690865 TCATTTGTGAACCACTTCTTACCT 58.309 37.500 0.00 0.00 35.11 3.08
4363 4992 6.039382 ACTTCATTTGTGAACCACTTCTTACC 59.961 38.462 0.00 0.00 35.11 2.85
4365 4994 6.826231 TCACTTCATTTGTGAACCACTTCTTA 59.174 34.615 0.00 0.00 40.89 2.10
4366 4995 5.652014 TCACTTCATTTGTGAACCACTTCTT 59.348 36.000 0.00 0.00 40.89 2.52
4367 4996 5.192927 TCACTTCATTTGTGAACCACTTCT 58.807 37.500 0.00 0.00 40.89 2.85
4409 7131 4.905269 CATGTATATCATGCTCATTGGCG 58.095 43.478 0.00 0.00 45.69 5.69
4471 7972 9.748708 CTTGTTTTTGATATGGAAACTTGAAGA 57.251 29.630 0.00 0.00 35.04 2.87
4521 8023 8.779303 ACGTTTTGACATACATTGAGTCATTTA 58.221 29.630 0.00 0.00 41.42 1.40
4533 8035 7.921787 ACAAATAAGTGACGTTTTGACATACA 58.078 30.769 13.50 0.00 34.13 2.29
4541 8043 7.987649 TCCAGTTTACAAATAAGTGACGTTTT 58.012 30.769 0.00 0.00 0.00 2.43
4591 8093 7.543756 TGTGTGAACTCATCGAACAATATCTA 58.456 34.615 0.00 0.00 0.00 1.98
4599 8101 2.410053 GCTCTGTGTGAACTCATCGAAC 59.590 50.000 0.00 0.00 0.00 3.95
4603 8105 2.462456 TGGCTCTGTGTGAACTCATC 57.538 50.000 0.00 0.00 0.00 2.92
4615 8117 3.464907 CATAGTGGATGTCTTGGCTCTG 58.535 50.000 0.00 0.00 0.00 3.35
4627 8129 6.656902 TCTTCTGAAAATCTGCATAGTGGAT 58.343 36.000 0.00 0.00 0.00 3.41
4632 8134 9.850628 TTTTCAATCTTCTGAAAATCTGCATAG 57.149 29.630 7.27 0.00 45.71 2.23
4644 8146 9.565090 TCTCTTTCTGAATTTTCAATCTTCTGA 57.435 29.630 0.00 0.00 36.64 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.