Multiple sequence alignment - TraesCS3A01G470800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G470800 chr3A 100.000 4712 0 0 1 4712 702555090 702559801 0.000000e+00 8702.0
1 TraesCS3A01G470800 chr3A 80.668 419 78 2 1219 1637 701265200 701265615 5.880000e-84 322.0
2 TraesCS3A01G470800 chr3A 77.854 438 80 7 1217 1648 702915940 702915514 6.050000e-64 255.0
3 TraesCS3A01G470800 chr3A 87.578 161 20 0 1695 1855 702557751 702557591 2.240000e-43 187.0
4 TraesCS3A01G470800 chr3A 87.692 130 12 2 962 1091 655572392 655572517 1.060000e-31 148.0
5 TraesCS3A01G470800 chr3A 88.000 125 14 1 969 1092 655631683 655631807 3.800000e-31 147.0
6 TraesCS3A01G470800 chr3A 92.929 99 6 1 543 641 61800370 61800467 4.920000e-30 143.0
7 TraesCS3A01G470800 chr3A 86.400 125 16 1 978 1101 655886634 655886510 8.220000e-28 135.0
8 TraesCS3A01G470800 chr3A 75.099 253 57 6 2699 2948 702952049 702951800 3.850000e-21 113.0
9 TraesCS3A01G470800 chr3A 92.308 65 4 1 716 780 61800473 61800536 1.810000e-14 91.6
10 TraesCS3A01G470800 chr3A 90.323 62 5 1 4652 4712 702589493 702589432 3.910000e-11 80.5
11 TraesCS3A01G470800 chr3D 91.640 1232 67 11 3337 4549 569929392 569930606 0.000000e+00 1672.0
12 TraesCS3A01G470800 chr3D 90.736 734 63 5 2665 3395 567842690 567843421 0.000000e+00 974.0
13 TraesCS3A01G470800 chr3D 90.485 557 43 3 1 547 569901580 569902136 0.000000e+00 726.0
14 TraesCS3A01G470800 chr3D 85.827 254 21 8 954 1203 567842316 567842558 6.050000e-64 255.0
15 TraesCS3A01G470800 chr3D 91.228 171 15 0 543 713 569904495 569904665 2.840000e-57 233.0
16 TraesCS3A01G470800 chr3D 87.692 130 12 2 962 1091 520153031 520153156 1.060000e-31 148.0
17 TraesCS3A01G470800 chr3D 78.355 231 17 14 720 925 569904876 569905098 8.280000e-23 119.0
18 TraesCS3A01G470800 chr3D 81.250 144 24 2 785 926 567842100 567842242 3.850000e-21 113.0
19 TraesCS3A01G470800 chr3D 89.855 69 7 0 4644 4712 569931114 569931182 6.490000e-14 89.8
20 TraesCS3A01G470800 chr2D 82.098 553 68 28 2127 2664 263496183 263495647 1.200000e-120 444.0
21 TraesCS3A01G470800 chr2B 84.017 463 49 21 2207 2664 779362018 779361576 5.640000e-114 422.0
22 TraesCS3A01G470800 chr2B 88.626 211 21 3 1730 1938 779362825 779362616 2.180000e-63 254.0
23 TraesCS3A01G470800 chrUn 81.053 570 71 23 9 547 341147670 341147107 2.030000e-113 420.0
24 TraesCS3A01G470800 chrUn 80.742 566 72 23 7 541 287226093 287226652 1.580000e-109 407.0
25 TraesCS3A01G470800 chrUn 80.742 566 72 23 7 541 287477991 287478550 1.580000e-109 407.0
26 TraesCS3A01G470800 chrUn 80.742 566 72 23 7 541 323541262 323540703 1.580000e-109 407.0
27 TraesCS3A01G470800 chrUn 100.000 55 0 0 726 780 67445136 67445082 8.340000e-18 102.0
28 TraesCS3A01G470800 chrUn 96.721 61 2 0 720 780 337805664 337805724 8.340000e-18 102.0
29 TraesCS3A01G470800 chr7D 82.480 508 61 21 2167 2664 556335111 556334622 2.030000e-113 420.0
30 TraesCS3A01G470800 chr7D 86.835 357 44 2 2309 2664 260028500 260028146 3.420000e-106 396.0
31 TraesCS3A01G470800 chr2A 88.596 342 34 2 2325 2664 691123922 691123584 1.220000e-110 411.0
32 TraesCS3A01G470800 chr2A 85.873 361 43 5 2305 2664 691158875 691158522 1.240000e-100 377.0
33 TraesCS3A01G470800 chr2A 82.796 186 26 4 1703 1883 25360806 25360622 1.360000e-35 161.0
34 TraesCS3A01G470800 chr5D 86.472 377 45 5 2290 2664 494767606 494767978 4.390000e-110 409.0
35 TraesCS3A01G470800 chr5D 81.203 399 57 11 1231 1620 297737181 297737570 5.920000e-79 305.0
36 TraesCS3A01G470800 chr5D 87.843 255 27 3 1690 1940 494766907 494767161 3.570000e-76 296.0
37 TraesCS3A01G470800 chr5D 74.241 823 137 50 3669 4462 297750134 297750910 4.640000e-70 276.0
38 TraesCS3A01G470800 chr5D 85.542 166 21 3 1692 1855 556050086 556050250 2.250000e-38 171.0
39 TraesCS3A01G470800 chr5D 88.793 116 9 1 954 1069 297736842 297736953 6.360000e-29 139.0
40 TraesCS3A01G470800 chr1B 85.309 388 50 7 2280 2663 8850535 8850151 1.230000e-105 394.0
41 TraesCS3A01G470800 chr1B 87.938 257 28 3 1695 1949 8851115 8850860 2.760000e-77 300.0
42 TraesCS3A01G470800 chr1B 85.657 251 35 1 1691 1941 567144562 567144313 3.620000e-66 263.0
43 TraesCS3A01G470800 chr3B 79.664 536 74 16 3629 4159 755325570 755326075 2.090000e-93 353.0
44 TraesCS3A01G470800 chr3B 81.297 401 68 5 1298 1692 756684357 756683958 7.610000e-83 318.0
45 TraesCS3A01G470800 chr3B 85.185 216 27 5 7 222 756614795 756615005 2.860000e-52 217.0
46 TraesCS3A01G470800 chr3B 93.617 141 9 0 4507 4647 755326104 755326244 1.330000e-50 211.0
47 TraesCS3A01G470800 chr3B 85.600 125 17 1 969 1092 684767319 684767443 3.830000e-26 130.0
48 TraesCS3A01G470800 chr3B 91.304 69 4 2 4645 4712 755326277 755326344 5.020000e-15 93.5
49 TraesCS3A01G470800 chr7A 83.249 394 50 14 2290 2676 686046435 686046051 9.700000e-92 348.0
50 TraesCS3A01G470800 chr7A 93.939 99 6 0 543 641 720591030 720590932 2.940000e-32 150.0
51 TraesCS3A01G470800 chr7A 100.000 55 0 0 726 780 720590916 720590862 8.340000e-18 102.0
52 TraesCS3A01G470800 chr5A 81.592 402 56 11 1231 1623 401317354 401316962 2.740000e-82 316.0
53 TraesCS3A01G470800 chr5A 90.643 171 15 1 543 713 709003328 709003497 4.740000e-55 226.0
54 TraesCS3A01G470800 chr5A 85.401 137 16 1 954 1090 401317693 401317561 6.360000e-29 139.0
55 TraesCS3A01G470800 chr1A 89.069 247 25 2 1695 1940 22888190 22887945 5.920000e-79 305.0
56 TraesCS3A01G470800 chr1A 79.677 433 70 12 1199 1624 14109392 14108971 3.570000e-76 296.0
57 TraesCS3A01G470800 chr1A 79.902 408 75 4 1217 1622 14127117 14126715 4.610000e-75 292.0
58 TraesCS3A01G470800 chr1A 93.939 99 6 0 543 641 331636962 331636864 2.940000e-32 150.0
59 TraesCS3A01G470800 chr1A 93.478 92 6 0 543 634 528587760 528587851 2.290000e-28 137.0
60 TraesCS3A01G470800 chr1A 96.721 61 2 0 720 780 528587866 528587926 8.340000e-18 102.0
61 TraesCS3A01G470800 chr1A 96.364 55 2 0 726 780 331636848 331636794 1.810000e-14 91.6
62 TraesCS3A01G470800 chr1D 79.567 416 74 7 1213 1624 12179446 12179038 2.150000e-73 287.0
63 TraesCS3A01G470800 chr1D 80.126 317 59 3 1310 1624 12249671 12249357 2.840000e-57 233.0
64 TraesCS3A01G470800 chr5B 73.601 822 143 47 3669 4462 338484298 338485073 1.010000e-61 248.0
65 TraesCS3A01G470800 chr5B 80.370 270 48 4 1231 1499 338481567 338481832 2.880000e-47 200.0
66 TraesCS3A01G470800 chr5B 86.420 162 18 4 1692 1851 610382950 610383109 1.740000e-39 174.0
67 TraesCS3A01G470800 chr5B 86.567 134 14 1 954 1087 338481228 338481357 1.370000e-30 145.0
68 TraesCS3A01G470800 chr7B 91.228 171 15 0 543 713 656234561 656234731 2.840000e-57 233.0
69 TraesCS3A01G470800 chr7B 90.058 171 17 0 543 713 656263861 656264031 6.140000e-54 222.0
70 TraesCS3A01G470800 chr7B 88.957 163 17 1 552 713 614554116 614554278 2.880000e-47 200.0
71 TraesCS3A01G470800 chr7B 98.276 58 1 0 723 780 614554466 614554523 8.340000e-18 102.0
72 TraesCS3A01G470800 chr6A 100.000 30 0 0 1880 1909 445273261 445273290 6.590000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G470800 chr3A 702555090 702559801 4711 False 8702.000000 8702 100.000000 1 4712 1 chr3A.!!$F4 4711
1 TraesCS3A01G470800 chr3D 569929392 569931182 1790 False 880.900000 1672 90.747500 3337 4712 2 chr3D.!!$F4 1375
2 TraesCS3A01G470800 chr3D 567842100 567843421 1321 False 447.333333 974 85.937667 785 3395 3 chr3D.!!$F2 2610
3 TraesCS3A01G470800 chr3D 569901580 569905098 3518 False 359.333333 726 86.689333 1 925 3 chr3D.!!$F3 924
4 TraesCS3A01G470800 chr2D 263495647 263496183 536 True 444.000000 444 82.098000 2127 2664 1 chr2D.!!$R1 537
5 TraesCS3A01G470800 chr2B 779361576 779362825 1249 True 338.000000 422 86.321500 1730 2664 2 chr2B.!!$R1 934
6 TraesCS3A01G470800 chrUn 341147107 341147670 563 True 420.000000 420 81.053000 9 547 1 chrUn.!!$R3 538
7 TraesCS3A01G470800 chrUn 287226093 287226652 559 False 407.000000 407 80.742000 7 541 1 chrUn.!!$F1 534
8 TraesCS3A01G470800 chrUn 287477991 287478550 559 False 407.000000 407 80.742000 7 541 1 chrUn.!!$F2 534
9 TraesCS3A01G470800 chrUn 323540703 323541262 559 True 407.000000 407 80.742000 7 541 1 chrUn.!!$R2 534
10 TraesCS3A01G470800 chr5D 494766907 494767978 1071 False 352.500000 409 87.157500 1690 2664 2 chr5D.!!$F4 974
11 TraesCS3A01G470800 chr5D 297750134 297750910 776 False 276.000000 276 74.241000 3669 4462 1 chr5D.!!$F1 793
12 TraesCS3A01G470800 chr5D 297736842 297737570 728 False 222.000000 305 84.998000 954 1620 2 chr5D.!!$F3 666
13 TraesCS3A01G470800 chr1B 8850151 8851115 964 True 347.000000 394 86.623500 1695 2663 2 chr1B.!!$R2 968
14 TraesCS3A01G470800 chr3B 755325570 755326344 774 False 219.166667 353 88.195000 3629 4712 3 chr3B.!!$F3 1083
15 TraesCS3A01G470800 chr5A 401316962 401317693 731 True 227.500000 316 83.496500 954 1623 2 chr5A.!!$R1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 3475 0.032130 TTCAGTGACAGACAGGTCGC 59.968 55.0 0.00 0.00 46.12 5.19 F
856 3482 0.034380 ACAGACAGGTCGCTAGGCTA 60.034 55.0 0.00 0.00 34.09 3.93 F
1356 4110 0.036388 CTCTGGCCCAAACGCTCTAA 60.036 55.0 0.00 0.00 0.00 2.10 F
1995 4758 0.034476 TGCTCATGGATCTCATCGCC 59.966 55.0 0.00 0.00 32.92 5.54 F
2738 5964 0.179009 TGATGGGCATGCTAGGCTTC 60.179 55.0 18.92 7.09 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1976 4739 0.034476 GGCGATGAGATCCATGAGCA 59.966 55.0 15.92 0.0 37.29 4.26 R
1978 4741 0.389556 CCGGCGATGAGATCCATGAG 60.390 60.0 9.30 0.0 35.17 2.90 R
3182 6411 0.179045 ATACTTGGGACCATGAGCGC 60.179 55.0 0.00 0.0 0.00 5.92 R
3476 6708 0.251922 AGGGGCGTAACAGGTCACTA 60.252 55.0 0.00 0.0 0.00 2.74 R
4505 7786 0.036952 ACCCGAGAGAGCAACATGTG 60.037 55.0 0.00 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.961394 CAAGGCCTGATGGATTGATGG 59.039 52.381 5.69 0.00 35.10 3.51
83 84 1.144503 GGCCTGATGGATTGATGGTCT 59.855 52.381 0.00 0.00 34.57 3.85
151 153 1.338105 TGAATGAGACTGAGCCGTTGG 60.338 52.381 0.00 0.00 0.00 3.77
167 169 2.459934 GTTGGTTTCTTCAAGGCAACG 58.540 47.619 0.00 0.00 46.39 4.10
193 195 5.885352 TGTCAACAGTTTCCTTTGATCTTGA 59.115 36.000 0.00 0.00 32.10 3.02
218 220 1.136329 AGGATGGTGAGTTGGTGGCT 61.136 55.000 0.00 0.00 0.00 4.75
224 240 0.385390 GTGAGTTGGTGGCTGGTTTG 59.615 55.000 0.00 0.00 0.00 2.93
243 259 1.336440 TGGAAGGCAACAACATGTTCG 59.664 47.619 8.48 7.26 38.77 3.95
257 273 6.072508 ACAACATGTTCGCACTTCATTAATCT 60.073 34.615 8.48 0.00 0.00 2.40
262 278 8.950961 CATGTTCGCACTTCATTAATCTATTTG 58.049 33.333 0.00 0.00 0.00 2.32
298 323 4.025647 GGCTTTCTTGCGTCATACTATGTC 60.026 45.833 0.00 0.00 0.00 3.06
311 336 7.306457 CGTCATACTATGTCATTGCTTCTCTTG 60.306 40.741 0.00 0.00 0.00 3.02
413 440 4.034626 CGTTTGTCCAAGTACATGTTCACA 59.965 41.667 2.30 0.00 0.00 3.58
417 444 4.072131 GTCCAAGTACATGTTCACACCAT 58.928 43.478 2.30 0.00 0.00 3.55
445 472 7.229506 ACCATATTCTAGCTTTCAGTTATTGCC 59.770 37.037 0.00 0.00 0.00 4.52
504 538 4.220382 CACATTTGACCTTAATTCAGGCCA 59.780 41.667 5.01 0.00 37.47 5.36
511 545 3.274288 CCTTAATTCAGGCCAGTGACTC 58.726 50.000 5.01 0.00 0.00 3.36
597 2994 0.819259 GTGCAGCTTCCTGTGTCCAA 60.819 55.000 0.00 0.00 41.26 3.53
601 2998 1.808945 CAGCTTCCTGTGTCCAATGTC 59.191 52.381 0.00 0.00 34.31 3.06
609 3006 1.317613 GTGTCCAATGTCAGTGGCAA 58.682 50.000 14.60 2.18 35.99 4.52
612 3009 2.964464 TGTCCAATGTCAGTGGCAATTT 59.036 40.909 14.60 0.00 35.99 1.82
613 3010 3.243805 TGTCCAATGTCAGTGGCAATTTG 60.244 43.478 14.60 2.47 35.99 2.32
624 3021 2.554032 GTGGCAATTTGAGCACTGTAGT 59.446 45.455 0.00 0.00 0.00 2.73
628 3025 4.082571 GGCAATTTGAGCACTGTAGTTCAT 60.083 41.667 0.00 0.00 0.00 2.57
634 3031 9.683069 AATTTGAGCACTGTAGTTCATTAAAAG 57.317 29.630 0.00 0.00 0.00 2.27
641 3038 8.289618 GCACTGTAGTTCATTAAAAGAATGTGA 58.710 33.333 0.00 0.00 0.00 3.58
672 3069 7.633018 TTACAGAGATAGGATATGCCCTTTT 57.367 36.000 0.00 0.00 37.74 2.27
679 3076 8.454859 AGATAGGATATGCCCTTTTCTTCATA 57.545 34.615 0.00 0.00 37.74 2.15
713 3110 8.902540 TTGTAAGCATGAAGAAACTTCTTAGA 57.097 30.769 4.71 0.00 46.84 2.10
717 3114 8.499403 AAGCATGAAGAAACTTCTTAGATACC 57.501 34.615 4.71 0.00 46.84 2.73
718 3115 7.624549 AGCATGAAGAAACTTCTTAGATACCA 58.375 34.615 4.71 0.00 46.84 3.25
721 3322 9.388506 CATGAAGAAACTTCTTAGATACCATGT 57.611 33.333 14.88 0.00 46.84 3.21
724 3325 8.567285 AAGAAACTTCTTAGATACCATGTTGG 57.433 34.615 2.83 0.00 45.17 3.77
748 3349 6.280643 GTCTAAAATGTTTTCCCTGTTTGCT 58.719 36.000 0.00 0.00 0.00 3.91
808 3434 8.284945 ACAGACAGGTCGTTAGTATTGTATTA 57.715 34.615 0.00 0.00 34.09 0.98
838 3464 1.967319 TTGACCAGCCTTTCAGTGAC 58.033 50.000 0.00 0.00 0.00 3.67
839 3465 0.836606 TGACCAGCCTTTCAGTGACA 59.163 50.000 0.00 0.00 0.00 3.58
840 3466 1.202687 TGACCAGCCTTTCAGTGACAG 60.203 52.381 0.00 0.00 0.00 3.51
841 3467 1.070758 GACCAGCCTTTCAGTGACAGA 59.929 52.381 7.90 0.00 0.00 3.41
842 3468 1.202698 ACCAGCCTTTCAGTGACAGAC 60.203 52.381 7.90 0.00 0.00 3.51
843 3469 1.202687 CCAGCCTTTCAGTGACAGACA 60.203 52.381 7.90 0.00 0.00 3.41
844 3470 2.141517 CAGCCTTTCAGTGACAGACAG 58.858 52.381 7.90 0.00 0.00 3.51
845 3471 1.071385 AGCCTTTCAGTGACAGACAGG 59.929 52.381 7.90 5.88 36.31 4.00
846 3472 1.202698 GCCTTTCAGTGACAGACAGGT 60.203 52.381 11.14 0.00 35.78 4.00
847 3473 2.760374 CCTTTCAGTGACAGACAGGTC 58.240 52.381 7.90 0.00 38.29 3.85
848 3474 2.398498 CTTTCAGTGACAGACAGGTCG 58.602 52.381 0.00 0.00 40.72 4.79
849 3475 0.032130 TTCAGTGACAGACAGGTCGC 59.968 55.000 0.00 0.00 46.12 5.19
856 3482 0.034380 ACAGACAGGTCGCTAGGCTA 60.034 55.000 0.00 0.00 34.09 3.93
857 3483 1.323412 CAGACAGGTCGCTAGGCTAT 58.677 55.000 0.00 0.00 34.09 2.97
930 3565 3.393472 GCCACAGGCCTAGATTCTG 57.607 57.895 3.98 0.00 44.06 3.02
931 3566 0.833287 GCCACAGGCCTAGATTCTGA 59.167 55.000 3.98 0.00 44.06 3.27
933 3568 2.744494 GCCACAGGCCTAGATTCTGAAG 60.744 54.545 3.98 0.00 44.06 3.02
934 3569 2.768527 CCACAGGCCTAGATTCTGAAGA 59.231 50.000 3.98 0.00 33.19 2.87
935 3570 3.390639 CCACAGGCCTAGATTCTGAAGAT 59.609 47.826 3.98 0.00 33.19 2.40
937 3572 5.435291 CACAGGCCTAGATTCTGAAGATTT 58.565 41.667 3.98 0.00 33.19 2.17
938 3573 6.408548 CCACAGGCCTAGATTCTGAAGATTTA 60.409 42.308 3.98 0.00 33.19 1.40
939 3574 7.050377 CACAGGCCTAGATTCTGAAGATTTAA 58.950 38.462 3.98 0.00 33.19 1.52
940 3575 7.226325 CACAGGCCTAGATTCTGAAGATTTAAG 59.774 40.741 3.98 0.00 33.19 1.85
941 3576 7.126421 ACAGGCCTAGATTCTGAAGATTTAAGA 59.874 37.037 3.98 0.00 33.19 2.10
942 3577 8.156165 CAGGCCTAGATTCTGAAGATTTAAGAT 58.844 37.037 3.98 0.00 0.00 2.40
943 3578 8.374743 AGGCCTAGATTCTGAAGATTTAAGATC 58.625 37.037 1.29 0.00 0.00 2.75
944 3579 8.374743 GGCCTAGATTCTGAAGATTTAAGATCT 58.625 37.037 0.00 0.00 0.00 2.75
945 3580 9.206870 GCCTAGATTCTGAAGATTTAAGATCTG 57.793 37.037 0.00 0.00 0.00 2.90
951 3586 8.783833 TTCTGAAGATTTAAGATCTGAAGTGG 57.216 34.615 0.00 0.00 0.00 4.00
1016 3697 1.598701 GCCATGGCCTCCAAACAGAC 61.599 60.000 27.24 0.00 36.95 3.51
1093 3774 2.630098 CAGGTGTCTTCTCCTGTCTCAA 59.370 50.000 7.80 0.00 45.13 3.02
1094 3775 2.630580 AGGTGTCTTCTCCTGTCTCAAC 59.369 50.000 0.00 0.00 36.37 3.18
1095 3776 2.289133 GGTGTCTTCTCCTGTCTCAACC 60.289 54.545 0.00 0.00 0.00 3.77
1097 3778 3.038280 TGTCTTCTCCTGTCTCAACCAA 58.962 45.455 0.00 0.00 0.00 3.67
1107 3808 6.409704 TCCTGTCTCAACCAATTCTCTTATG 58.590 40.000 0.00 0.00 0.00 1.90
1122 3824 8.908786 ATTCTCTTATGTTCTTTGACACTTGA 57.091 30.769 0.00 0.00 31.30 3.02
1130 3832 6.898041 TGTTCTTTGACACTTGAATTATCGG 58.102 36.000 0.00 0.00 0.00 4.18
1136 3838 4.391830 TGACACTTGAATTATCGGAAGTGC 59.608 41.667 0.00 0.00 46.07 4.40
1140 3842 5.122239 CACTTGAATTATCGGAAGTGCTTCA 59.878 40.000 13.16 0.00 39.03 3.02
1141 3843 5.122396 ACTTGAATTATCGGAAGTGCTTCAC 59.878 40.000 13.16 0.00 41.20 3.18
1145 3847 2.270352 ATCGGAAGTGCTTCACCAAA 57.730 45.000 13.16 0.00 41.20 3.28
1146 3848 2.045561 TCGGAAGTGCTTCACCAAAA 57.954 45.000 13.16 0.00 41.20 2.44
1152 3854 2.892374 AGTGCTTCACCAAAAACTTGC 58.108 42.857 0.00 0.00 34.49 4.01
1235 3989 3.812053 GACTGCAGAGTGTTGAACAGAAT 59.188 43.478 23.35 0.00 30.16 2.40
1237 3991 5.368145 ACTGCAGAGTGTTGAACAGAATAA 58.632 37.500 23.35 0.00 0.00 1.40
1244 3998 8.777413 CAGAGTGTTGAACAGAATAAGATGAAA 58.223 33.333 0.00 0.00 0.00 2.69
1259 4013 3.782523 AGATGAAACCCCTGATAGAAGCA 59.217 43.478 0.00 0.00 0.00 3.91
1266 4020 1.271271 CCCTGATAGAAGCAGCCATCC 60.271 57.143 0.00 0.00 32.06 3.51
1274 4028 2.573462 AGAAGCAGCCATCCTTGACTTA 59.427 45.455 0.00 0.00 0.00 2.24
1278 4032 2.646930 CAGCCATCCTTGACTTATGCA 58.353 47.619 0.00 0.00 0.00 3.96
1282 4036 2.357009 CCATCCTTGACTTATGCAGCAC 59.643 50.000 0.00 0.00 0.00 4.40
1285 4039 1.470098 CCTTGACTTATGCAGCACCAC 59.530 52.381 0.00 0.00 0.00 4.16
1286 4040 1.470098 CTTGACTTATGCAGCACCACC 59.530 52.381 0.00 0.00 0.00 4.61
1287 4041 0.399833 TGACTTATGCAGCACCACCA 59.600 50.000 0.00 0.00 0.00 4.17
1288 4042 0.804989 GACTTATGCAGCACCACCAC 59.195 55.000 0.00 0.00 0.00 4.16
1289 4043 0.609131 ACTTATGCAGCACCACCACC 60.609 55.000 0.00 0.00 0.00 4.61
1291 4045 0.893270 TTATGCAGCACCACCACCAC 60.893 55.000 0.00 0.00 0.00 4.16
1296 4050 4.514585 GCACCACCACCACCACCA 62.515 66.667 0.00 0.00 0.00 4.17
1301 4055 1.462731 CCACCACCACCACCATGTTG 61.463 60.000 0.00 0.00 0.00 3.33
1304 4058 1.831726 CACCACCACCATGTTGCCA 60.832 57.895 0.00 0.00 0.00 4.92
1305 4059 1.075674 ACCACCACCATGTTGCCAA 60.076 52.632 0.00 0.00 0.00 4.52
1306 4060 1.367102 CCACCACCATGTTGCCAAC 59.633 57.895 0.00 0.00 0.00 3.77
1307 4061 1.007502 CACCACCATGTTGCCAACG 60.008 57.895 2.68 0.00 0.00 4.10
1308 4062 2.199652 ACCACCATGTTGCCAACGG 61.200 57.895 2.68 1.51 0.00 4.44
1322 4076 0.734889 CAACGGAGATGGTGATTGCC 59.265 55.000 0.00 0.00 0.00 4.52
1325 4079 0.250038 CGGAGATGGTGATTGCCGAT 60.250 55.000 0.00 0.00 41.11 4.18
1326 4080 1.517242 GGAGATGGTGATTGCCGATC 58.483 55.000 0.00 0.00 35.21 3.69
1331 4085 1.224592 GGTGATTGCCGATCTGGGT 59.775 57.895 5.87 0.00 38.63 4.51
1337 4091 2.514824 GCCGATCTGGGTTGCTCC 60.515 66.667 5.87 0.00 38.63 4.70
1339 4093 1.144936 CCGATCTGGGTTGCTCCTC 59.855 63.158 0.00 0.00 36.25 3.71
1349 4103 1.228552 TTGCTCCTCTGGCCCAAAC 60.229 57.895 0.00 0.00 0.00 2.93
1352 4106 3.249189 TCCTCTGGCCCAAACGCT 61.249 61.111 0.00 0.00 0.00 5.07
1356 4110 0.036388 CTCTGGCCCAAACGCTCTAA 60.036 55.000 0.00 0.00 0.00 2.10
1359 4113 0.037590 TGGCCCAAACGCTCTAACAT 59.962 50.000 0.00 0.00 0.00 2.71
1364 4118 2.095263 CCCAAACGCTCTAACATTGGTG 60.095 50.000 0.00 0.00 39.07 4.17
1367 4121 2.831685 ACGCTCTAACATTGGTGTCA 57.168 45.000 0.00 0.00 37.67 3.58
1369 4123 3.674997 ACGCTCTAACATTGGTGTCAAT 58.325 40.909 0.00 0.00 43.79 2.57
1370 4124 4.827692 ACGCTCTAACATTGGTGTCAATA 58.172 39.130 0.00 0.00 41.29 1.90
1373 4127 4.878397 GCTCTAACATTGGTGTCAATAGCT 59.122 41.667 0.00 0.00 41.29 3.32
1377 4131 3.347216 ACATTGGTGTCAATAGCTGTCC 58.653 45.455 0.00 0.00 41.29 4.02
1385 4139 2.104792 GTCAATAGCTGTCCAGGCCATA 59.895 50.000 5.01 0.00 0.00 2.74
1386 4140 2.104792 TCAATAGCTGTCCAGGCCATAC 59.895 50.000 5.01 0.00 0.00 2.39
1387 4141 1.806496 ATAGCTGTCCAGGCCATACA 58.194 50.000 5.01 4.97 0.00 2.29
1390 4144 0.745845 GCTGTCCAGGCCATACACAG 60.746 60.000 5.01 12.43 38.01 3.66
1391 4145 0.615331 CTGTCCAGGCCATACACAGT 59.385 55.000 5.01 0.00 31.59 3.55
1442 4196 1.599542 GAAGTGTGTGTGCTCCTCAAC 59.400 52.381 0.00 0.00 0.00 3.18
1452 4206 0.108567 GCTCCTCAACGACCTTCCTC 60.109 60.000 0.00 0.00 0.00 3.71
1474 4228 0.951558 AATGACTTCAACACGGTGGC 59.048 50.000 13.48 0.00 0.00 5.01
1476 4230 3.236618 GACTTCAACACGGTGGCGC 62.237 63.158 13.48 0.00 0.00 6.53
1495 4249 3.695606 GAGCCTGGTCACGCTCCA 61.696 66.667 9.70 0.00 44.70 3.86
1499 4253 1.153489 CCTGGTCACGCTCCATCAG 60.153 63.158 0.00 0.00 34.26 2.90
1500 4254 1.153489 CTGGTCACGCTCCATCAGG 60.153 63.158 0.00 0.00 34.26 3.86
1501 4255 2.187946 GGTCACGCTCCATCAGGG 59.812 66.667 0.00 0.00 41.01 4.45
1502 4256 2.359169 GGTCACGCTCCATCAGGGA 61.359 63.158 0.00 0.00 45.89 4.20
1529 4286 1.625616 CTATTGTCGTGACCGGTGTC 58.374 55.000 14.63 3.21 42.12 3.67
1567 4324 2.952978 ACGAGAGGCTATTCACTAGTGG 59.047 50.000 22.48 7.71 0.00 4.00
1597 4354 1.138069 TCTTGTCTGCTCGTCCAACAA 59.862 47.619 0.00 0.00 0.00 2.83
1599 4356 0.531974 TGTCTGCTCGTCCAACAACC 60.532 55.000 0.00 0.00 0.00 3.77
1613 4370 0.111061 ACAACCTGCATTGGCTCTCA 59.889 50.000 5.11 0.00 41.91 3.27
1615 4372 1.614903 CAACCTGCATTGGCTCTCAAA 59.385 47.619 0.00 0.00 41.91 2.69
1623 4380 2.260844 TTGGCTCTCAAAGGTGTGAG 57.739 50.000 2.25 2.25 45.44 3.51
1624 4381 1.131638 TGGCTCTCAAAGGTGTGAGT 58.868 50.000 7.42 0.00 44.01 3.41
1625 4382 1.070758 TGGCTCTCAAAGGTGTGAGTC 59.929 52.381 3.99 3.99 45.84 3.36
1626 4383 1.346068 GGCTCTCAAAGGTGTGAGTCT 59.654 52.381 7.42 0.00 43.50 3.24
1627 4384 2.411904 GCTCTCAAAGGTGTGAGTCTG 58.588 52.381 7.42 0.00 44.01 3.51
1628 4385 2.036475 GCTCTCAAAGGTGTGAGTCTGA 59.964 50.000 7.42 0.00 44.01 3.27
1629 4386 3.648009 CTCTCAAAGGTGTGAGTCTGAC 58.352 50.000 0.00 0.00 44.56 3.51
1630 4387 3.031013 TCTCAAAGGTGTGAGTCTGACA 58.969 45.455 10.88 0.00 44.56 3.58
1631 4388 3.126831 CTCAAAGGTGTGAGTCTGACAC 58.873 50.000 13.61 13.61 42.57 3.67
1632 4389 2.766263 TCAAAGGTGTGAGTCTGACACT 59.234 45.455 20.02 5.79 42.83 3.55
1633 4390 2.868583 CAAAGGTGTGAGTCTGACACTG 59.131 50.000 20.02 8.80 42.83 3.66
1634 4391 0.390860 AGGTGTGAGTCTGACACTGC 59.609 55.000 20.02 6.63 42.83 4.40
1635 4392 0.390860 GGTGTGAGTCTGACACTGCT 59.609 55.000 20.02 0.00 42.83 4.24
1636 4393 1.604185 GGTGTGAGTCTGACACTGCTC 60.604 57.143 20.02 2.22 42.83 4.26
1637 4394 1.067669 GTGTGAGTCTGACACTGCTCA 59.932 52.381 14.57 1.59 40.54 4.26
1638 4395 1.756538 TGTGAGTCTGACACTGCTCAA 59.243 47.619 10.88 0.00 39.33 3.02
1639 4396 2.366590 TGTGAGTCTGACACTGCTCAAT 59.633 45.455 10.88 0.00 39.33 2.57
1640 4397 2.735663 GTGAGTCTGACACTGCTCAATG 59.264 50.000 10.88 0.00 39.33 2.82
1641 4398 2.289257 TGAGTCTGACACTGCTCAATGG 60.289 50.000 10.88 0.00 34.41 3.16
1642 4399 1.002888 AGTCTGACACTGCTCAATGGG 59.997 52.381 10.88 0.00 32.26 4.00
1646 4403 1.142667 TGACACTGCTCAATGGGTTGA 59.857 47.619 0.00 0.00 41.89 3.18
1668 4425 9.271828 GTTGATTTGTTCCATTACTTTTGGATT 57.728 29.630 0.00 0.00 42.69 3.01
1670 4427 7.812191 TGATTTGTTCCATTACTTTTGGATTCG 59.188 33.333 0.00 0.00 42.69 3.34
1673 4430 7.372451 TGTTCCATTACTTTTGGATTCGTAG 57.628 36.000 0.00 0.00 42.69 3.51
1674 4431 6.373216 TGTTCCATTACTTTTGGATTCGTAGG 59.627 38.462 0.00 0.00 42.69 3.18
1678 4435 6.349777 CCATTACTTTTGGATTCGTAGGCAAA 60.350 38.462 0.00 0.00 36.26 3.68
1733 4491 4.022068 CACCACATTGAAGCATAGGTTTGT 60.022 41.667 0.00 0.00 0.00 2.83
1743 4501 5.607119 AGCATAGGTTTGTAGAAAACACG 57.393 39.130 2.93 0.00 38.00 4.49
1767 4525 4.679654 GGTTTACGAATTTGTGCCAGAAAG 59.320 41.667 8.70 0.00 0.00 2.62
1786 4544 3.439857 AGCACTGATTTCTGGCCTAAA 57.560 42.857 3.32 5.20 0.00 1.85
1795 4555 4.744795 TTTCTGGCCTAAACTTTTGCAA 57.255 36.364 3.32 0.00 0.00 4.08
1823 4585 3.065655 CTGATCGATCTCTTTGGGCATC 58.934 50.000 25.02 0.00 0.00 3.91
1940 4703 1.609208 AAAACGCAATCAGCTCCTGT 58.391 45.000 0.00 0.00 42.61 4.00
1949 4712 2.031516 CAGCTCCTGTCAAGCCGTG 61.032 63.158 0.00 0.00 40.75 4.94
1950 4713 3.426568 GCTCCTGTCAAGCCGTGC 61.427 66.667 0.00 0.00 33.53 5.34
1951 4714 2.031012 CTCCTGTCAAGCCGTGCA 59.969 61.111 0.00 0.00 0.00 4.57
1952 4715 2.280797 TCCTGTCAAGCCGTGCAC 60.281 61.111 6.82 6.82 0.00 4.57
1953 4716 2.591429 CCTGTCAAGCCGTGCACA 60.591 61.111 18.64 0.00 0.00 4.57
1954 4717 2.610694 CCTGTCAAGCCGTGCACAG 61.611 63.158 18.64 6.69 36.20 3.66
1955 4718 1.595109 CTGTCAAGCCGTGCACAGA 60.595 57.895 18.64 3.29 37.47 3.41
1956 4719 1.153269 TGTCAAGCCGTGCACAGAA 60.153 52.632 18.64 0.00 0.00 3.02
1957 4720 1.279840 GTCAAGCCGTGCACAGAAC 59.720 57.895 18.64 2.32 0.00 3.01
1958 4721 1.146041 TCAAGCCGTGCACAGAACT 59.854 52.632 18.64 4.85 0.00 3.01
1959 4722 1.159713 TCAAGCCGTGCACAGAACTG 61.160 55.000 18.64 7.10 0.00 3.16
1960 4723 1.146041 AAGCCGTGCACAGAACTGA 59.854 52.632 18.64 0.00 0.00 3.41
1961 4724 0.463654 AAGCCGTGCACAGAACTGAA 60.464 50.000 18.64 0.00 0.00 3.02
1962 4725 0.882042 AGCCGTGCACAGAACTGAAG 60.882 55.000 18.64 0.00 0.00 3.02
1963 4726 0.880278 GCCGTGCACAGAACTGAAGA 60.880 55.000 18.64 0.00 0.00 2.87
1964 4727 1.581934 CCGTGCACAGAACTGAAGAA 58.418 50.000 18.64 0.00 0.00 2.52
1965 4728 1.261619 CCGTGCACAGAACTGAAGAAC 59.738 52.381 18.64 4.82 0.00 3.01
1966 4729 1.071239 CGTGCACAGAACTGAAGAACG 60.071 52.381 18.64 12.01 35.92 3.95
1967 4730 2.201732 GTGCACAGAACTGAAGAACGA 58.798 47.619 13.17 0.00 0.00 3.85
1968 4731 2.802816 GTGCACAGAACTGAAGAACGAT 59.197 45.455 13.17 0.00 0.00 3.73
1969 4732 2.802247 TGCACAGAACTGAAGAACGATG 59.198 45.455 8.87 0.00 0.00 3.84
1970 4733 2.802816 GCACAGAACTGAAGAACGATGT 59.197 45.455 8.87 0.00 0.00 3.06
1971 4734 3.363378 GCACAGAACTGAAGAACGATGTG 60.363 47.826 8.87 0.00 39.73 3.21
1972 4735 3.804325 CACAGAACTGAAGAACGATGTGT 59.196 43.478 8.87 0.00 33.78 3.72
1973 4736 4.051922 ACAGAACTGAAGAACGATGTGTC 58.948 43.478 8.87 0.00 0.00 3.67
1982 4745 4.502263 CGATGTGTCGGTGCTCAT 57.498 55.556 0.00 0.00 44.00 2.90
1983 4746 2.001357 CGATGTGTCGGTGCTCATG 58.999 57.895 0.00 0.00 44.00 3.07
1984 4747 1.423721 CGATGTGTCGGTGCTCATGG 61.424 60.000 0.00 0.00 44.00 3.66
1985 4748 0.108186 GATGTGTCGGTGCTCATGGA 60.108 55.000 0.00 0.00 0.00 3.41
1986 4749 0.543277 ATGTGTCGGTGCTCATGGAT 59.457 50.000 0.00 0.00 0.00 3.41
1987 4750 0.108186 TGTGTCGGTGCTCATGGATC 60.108 55.000 0.00 0.00 0.00 3.36
1988 4751 0.176680 GTGTCGGTGCTCATGGATCT 59.823 55.000 0.00 0.00 0.00 2.75
1989 4752 0.461548 TGTCGGTGCTCATGGATCTC 59.538 55.000 0.00 0.00 0.00 2.75
1990 4753 0.461548 GTCGGTGCTCATGGATCTCA 59.538 55.000 0.00 0.00 0.00 3.27
1991 4754 1.069823 GTCGGTGCTCATGGATCTCAT 59.930 52.381 0.00 0.00 36.31 2.90
1992 4755 1.342496 TCGGTGCTCATGGATCTCATC 59.658 52.381 0.00 0.00 32.92 2.92
1993 4756 1.793258 GGTGCTCATGGATCTCATCG 58.207 55.000 0.00 0.00 32.92 3.84
1994 4757 1.146637 GTGCTCATGGATCTCATCGC 58.853 55.000 0.00 1.24 32.92 4.58
1995 4758 0.034476 TGCTCATGGATCTCATCGCC 59.966 55.000 0.00 0.00 32.92 5.54
1996 4759 1.013005 GCTCATGGATCTCATCGCCG 61.013 60.000 0.00 0.00 32.92 6.46
1997 4760 0.389556 CTCATGGATCTCATCGCCGG 60.390 60.000 0.00 0.00 32.92 6.13
1998 4761 2.031516 CATGGATCTCATCGCCGGC 61.032 63.158 19.07 19.07 32.92 6.13
1999 4762 3.245668 ATGGATCTCATCGCCGGCC 62.246 63.158 23.46 3.23 0.00 6.13
2000 4763 3.928779 GGATCTCATCGCCGGCCA 61.929 66.667 23.46 9.24 0.00 5.36
2001 4764 2.345244 GATCTCATCGCCGGCCAT 59.655 61.111 23.46 11.92 0.00 4.40
2002 4765 2.031516 GATCTCATCGCCGGCCATG 61.032 63.158 26.16 26.16 0.00 3.66
2003 4766 4.916293 TCTCATCGCCGGCCATGC 62.916 66.667 27.10 3.36 0.00 4.06
2031 4794 4.162690 CGAAGGGAGAAGGGGCGG 62.163 72.222 0.00 0.00 0.00 6.13
2032 4795 4.491409 GAAGGGAGAAGGGGCGGC 62.491 72.222 0.00 0.00 0.00 6.53
2162 5184 0.746204 GCTACTTGCTCCCCTGCTTC 60.746 60.000 0.00 0.00 38.95 3.86
2165 5187 2.034687 TTGCTCCCCTGCTTCTGC 59.965 61.111 0.00 0.00 40.20 4.26
2196 5290 0.736325 CTTGCTTCATTGCTGCTGCC 60.736 55.000 13.47 0.00 38.71 4.85
2197 5291 2.202570 GCTTCATTGCTGCTGCCG 60.203 61.111 13.47 1.88 38.71 5.69
2229 5384 3.054503 CTGCTTGCTCCGCTGCTT 61.055 61.111 0.00 0.00 32.36 3.91
2274 5465 3.123620 CTCCGTTGCTGCTGCTCC 61.124 66.667 17.00 6.11 40.48 4.70
2337 5562 2.815647 GCCGCGCTACTTGCTCTT 60.816 61.111 5.56 0.00 40.11 2.85
2426 5651 4.475135 GGGCGCACCTCCTCTTCC 62.475 72.222 10.83 0.00 35.85 3.46
2440 5665 2.768344 TTCCCTCTGGATCGGGGC 60.768 66.667 3.81 0.00 41.40 5.80
2441 5666 3.634157 TTCCCTCTGGATCGGGGCA 62.634 63.158 3.81 0.00 41.40 5.36
2447 5672 4.088351 TGGATCGGGGCAGGGAGA 62.088 66.667 0.00 0.00 0.00 3.71
2469 5694 3.399305 AGAGAGTTGTTTTTGGGAGGGAT 59.601 43.478 0.00 0.00 0.00 3.85
2470 5695 4.140924 AGAGAGTTGTTTTTGGGAGGGATT 60.141 41.667 0.00 0.00 0.00 3.01
2471 5696 4.556697 AGAGTTGTTTTTGGGAGGGATTT 58.443 39.130 0.00 0.00 0.00 2.17
2574 5799 7.566760 TCAGTGTTTTCTGCAAAAGATTAGA 57.433 32.000 0.00 0.00 33.93 2.10
2588 5814 7.308830 GCAAAAGATTAGACCAAGAATCAGTGT 60.309 37.037 0.00 0.00 35.00 3.55
2593 5819 6.539649 TTAGACCAAGAATCAGTGTTTTCG 57.460 37.500 0.00 0.00 0.00 3.46
2598 5824 2.795329 AGAATCAGTGTTTTCGGGCAT 58.205 42.857 0.00 0.00 0.00 4.40
2612 5838 2.944349 TCGGGCATAAATTCGTAAACCC 59.056 45.455 0.00 0.00 0.00 4.11
2682 5908 4.646945 CACTCTATCTTTACAGGCTCCTGA 59.353 45.833 21.75 3.76 46.30 3.86
2692 5918 1.277557 CAGGCTCCTGAAGTGCTTACT 59.722 52.381 10.33 0.00 46.30 2.24
2705 5931 8.123639 TGAAGTGCTTACTAGTAACAAGATCT 57.876 34.615 11.38 5.96 0.00 2.75
2724 5950 1.794701 CTCGGCGTATGACATTGATGG 59.205 52.381 6.85 0.00 0.00 3.51
2738 5964 0.179009 TGATGGGCATGCTAGGCTTC 60.179 55.000 18.92 7.09 0.00 3.86
2742 5968 1.185315 GGGCATGCTAGGCTTCAAAA 58.815 50.000 18.92 0.00 0.00 2.44
2769 5995 4.310769 CCTATCGTCTTTGAGGCTTATGG 58.689 47.826 0.00 0.00 0.00 2.74
2803 6029 6.263168 TCAGGAAAGATTTCACACTTTTCCTC 59.737 38.462 12.50 0.00 38.92 3.71
2822 6048 4.018960 TCCTCAAGCTAAGAGCCAAAGAAT 60.019 41.667 9.93 0.00 43.77 2.40
2823 6049 4.704057 CCTCAAGCTAAGAGCCAAAGAATT 59.296 41.667 9.93 0.00 43.77 2.17
2849 6076 3.467803 CAGGAGGTCGGATGGTTATTTC 58.532 50.000 0.00 0.00 0.00 2.17
2856 6083 4.383770 GGTCGGATGGTTATTTCTCTTCCA 60.384 45.833 0.00 0.00 0.00 3.53
2868 6095 2.245438 CTCTTCCAGGGAGGCGTTCC 62.245 65.000 0.00 0.00 46.00 3.62
2887 6114 3.942829 TCCGATGAACTTGCTTCTGAAT 58.057 40.909 0.00 0.00 0.00 2.57
2889 6116 4.393062 TCCGATGAACTTGCTTCTGAATTC 59.607 41.667 0.00 0.00 0.00 2.17
2899 6126 3.006247 GCTTCTGAATTCTGTCACCTCC 58.994 50.000 7.05 0.00 0.00 4.30
2907 6134 0.761323 TCTGTCACCTCCGGGAAACA 60.761 55.000 0.00 0.00 36.25 2.83
2925 6152 5.335661 GGAAACATTGGCTCAGATTTTACGT 60.336 40.000 0.00 0.00 0.00 3.57
2932 6159 3.932710 GGCTCAGATTTTACGTGTCATGA 59.067 43.478 0.00 0.00 0.00 3.07
2933 6160 4.201724 GGCTCAGATTTTACGTGTCATGAC 60.202 45.833 19.27 19.27 0.00 3.06
2967 6194 4.873827 CGCTGCCCTTACTTTTCTAACATA 59.126 41.667 0.00 0.00 0.00 2.29
2969 6196 5.220873 GCTGCCCTTACTTTTCTAACATAGC 60.221 44.000 0.00 0.00 0.00 2.97
2970 6197 5.811190 TGCCCTTACTTTTCTAACATAGCA 58.189 37.500 0.00 0.00 0.00 3.49
2971 6198 6.423182 TGCCCTTACTTTTCTAACATAGCAT 58.577 36.000 0.00 0.00 0.00 3.79
3008 6237 8.818057 GCTAACAAACTCACGACTATTTGATAT 58.182 33.333 11.80 0.00 35.93 1.63
3029 6258 9.391006 TGATATTTGTGGTCTTTTGGTACTATC 57.609 33.333 0.00 0.00 0.00 2.08
3043 6272 4.104579 TGGTACTATCGGTAGGGTGTGATA 59.895 45.833 7.79 0.00 31.96 2.15
3048 6277 2.651455 TCGGTAGGGTGTGATAGACAG 58.349 52.381 0.00 0.00 34.28 3.51
3051 6280 3.633418 GGTAGGGTGTGATAGACAGAGT 58.367 50.000 0.00 0.00 34.28 3.24
3052 6281 3.381908 GGTAGGGTGTGATAGACAGAGTG 59.618 52.174 0.00 0.00 34.28 3.51
3055 6284 4.160329 AGGGTGTGATAGACAGAGTGAAA 58.840 43.478 0.00 0.00 34.28 2.69
3061 6290 7.335422 GGTGTGATAGACAGAGTGAAATTTGAT 59.665 37.037 0.00 0.00 34.28 2.57
3091 6320 1.474077 GTGTCAATGCATGGACCTTCC 59.526 52.381 27.72 11.89 36.96 3.46
3092 6321 1.106285 GTCAATGCATGGACCTTCCC 58.894 55.000 21.82 0.00 35.03 3.97
3115 6344 4.564782 TGAAGAGCTGAAGGTGATCATT 57.435 40.909 0.00 0.00 0.00 2.57
3136 6365 7.810658 TCATTCAAGAAGAAGGATCTTTTTCG 58.189 34.615 0.00 0.00 45.91 3.46
3140 6369 7.161404 TCAAGAAGAAGGATCTTTTTCGATCA 58.839 34.615 0.00 0.00 45.91 2.92
3150 6379 4.568956 TCTTTTTCGATCAGTGAGATGCA 58.431 39.130 0.00 0.00 37.00 3.96
3178 6407 2.358737 CCCCGAAGCTGTGTGGAC 60.359 66.667 0.00 0.00 0.00 4.02
3182 6411 0.518636 CCGAAGCTGTGTGGACAATG 59.481 55.000 0.00 0.00 0.00 2.82
3200 6429 1.220749 GCGCTCATGGTCCCAAGTA 59.779 57.895 0.00 0.00 0.00 2.24
3201 6430 0.179045 GCGCTCATGGTCCCAAGTAT 60.179 55.000 0.00 0.00 0.00 2.12
3205 6434 2.945668 GCTCATGGTCCCAAGTATGTTC 59.054 50.000 0.00 0.00 0.00 3.18
3210 6439 1.737793 GGTCCCAAGTATGTTCGCAAG 59.262 52.381 0.00 0.00 0.00 4.01
3240 6469 3.006967 AGAGCCGTATTTGAGCCGATAAT 59.993 43.478 0.00 0.00 0.00 1.28
3301 6530 2.755876 ACGGAGCAGCGATGGAGA 60.756 61.111 1.46 0.00 0.00 3.71
3319 6548 3.058160 CAACCGGGCAGCTTGGAG 61.058 66.667 6.32 0.00 0.00 3.86
3331 6560 0.519077 GCTTGGAGGAAGAAGTTGCG 59.481 55.000 0.00 0.00 32.82 4.85
3408 6637 5.256474 ACTGATGTTTATACTTGCTTGCCT 58.744 37.500 0.00 0.00 0.00 4.75
3413 6642 7.384660 TGATGTTTATACTTGCTTGCCTTTTTG 59.615 33.333 0.00 0.00 0.00 2.44
3416 6645 8.198109 TGTTTATACTTGCTTGCCTTTTTGTAA 58.802 29.630 0.00 0.00 0.00 2.41
3496 6728 1.079336 GTGACCTGTTACGCCCCTC 60.079 63.158 0.00 0.00 0.00 4.30
3539 6771 4.657075 TGAGATTTTAAAAGGCGACGAC 57.343 40.909 6.79 0.00 0.00 4.34
3572 6804 7.100458 AGCACTTCATTATTTAACACATCCC 57.900 36.000 0.00 0.00 0.00 3.85
3663 6898 9.898152 TTTCCTTTTTATTTGACAAAATGGTCT 57.102 25.926 4.41 0.00 39.45 3.85
3728 6963 5.682943 TTATGAACCAGACACGGAAAAAG 57.317 39.130 0.00 0.00 0.00 2.27
3789 7024 4.062991 ACAAGACTAAAACTAAGTGCCCG 58.937 43.478 0.00 0.00 0.00 6.13
3791 7026 2.027469 AGACTAAAACTAAGTGCCCGGG 60.027 50.000 19.09 19.09 0.00 5.73
3813 7048 1.270094 TGCCCGAGACTGTAACACTTG 60.270 52.381 0.00 0.00 0.00 3.16
3819 7054 3.736252 CGAGACTGTAACACTTGTTCTGG 59.264 47.826 0.00 0.00 39.31 3.86
3866 7101 3.399330 TCAGAAAGATGACGGGTGTTTC 58.601 45.455 0.00 0.00 0.00 2.78
3867 7102 3.138304 CAGAAAGATGACGGGTGTTTCA 58.862 45.455 8.49 0.00 32.91 2.69
3962 7211 8.437360 TGTGTGATCTATTCCATAACAATGTC 57.563 34.615 0.00 0.00 0.00 3.06
4050 7299 6.985013 TCGTGTTAATGACTTAATGCTAACG 58.015 36.000 0.00 0.00 0.00 3.18
4177 7429 7.420800 CCAAATAACAATTCTGCTGGTCTATC 58.579 38.462 0.00 0.00 0.00 2.08
4240 7492 7.865706 ATCCGAATATGACCTTATTATTGGC 57.134 36.000 0.00 0.00 0.00 4.52
4253 7521 6.072673 CCTTATTATTGGCCGTTGACCTTATC 60.073 42.308 0.00 0.00 0.00 1.75
4311 7579 6.348868 CCCAGTTGAGCATAGAAAAGAAGAAC 60.349 42.308 0.00 0.00 0.00 3.01
4314 7582 6.429385 AGTTGAGCATAGAAAAGAAGAACTGG 59.571 38.462 0.00 0.00 0.00 4.00
4319 7587 6.429385 AGCATAGAAAAGAAGAACTGGACTTG 59.571 38.462 0.00 0.00 0.00 3.16
4320 7588 6.348868 GCATAGAAAAGAAGAACTGGACTTGG 60.349 42.308 0.00 0.00 0.00 3.61
4341 7609 1.413445 AGTTTGCAAGCAAAGGCATGA 59.587 42.857 19.47 0.00 45.16 3.07
4449 7719 9.092876 GACCTAATCTTTTATTCAGTCTGTCTG 57.907 37.037 0.00 0.00 44.85 3.51
4477 7747 3.056107 TGTCCCTCAGATTGGTAAGAACG 60.056 47.826 0.00 0.00 0.00 3.95
4479 7749 3.194968 TCCCTCAGATTGGTAAGAACGTC 59.805 47.826 0.00 0.00 0.00 4.34
4505 7786 4.284746 CCCTAAGTCATCCCTACTTCCATC 59.715 50.000 0.00 0.00 38.18 3.51
4510 7791 4.102210 AGTCATCCCTACTTCCATCACATG 59.898 45.833 0.00 0.00 0.00 3.21
4562 7935 2.426738 CCAAGACAAGCACCTTGACAAA 59.573 45.455 11.56 0.00 43.42 2.83
4621 8281 0.250124 TTGTCGCGTGGAAAGATGGT 60.250 50.000 5.77 0.00 0.00 3.55
4625 8285 1.478916 TCGCGTGGAAAGATGGTGATA 59.521 47.619 5.77 0.00 0.00 2.15
4629 8289 1.599542 GTGGAAAGATGGTGATAGCGC 59.400 52.381 0.00 0.00 0.00 5.92
4647 8342 3.958860 ACTTGGGCTGCTCCGCTT 61.959 61.111 0.00 0.00 34.94 4.68
4652 8347 4.087892 GGCTGCTCCGCTTGAGGA 62.088 66.667 0.00 0.00 41.73 3.71
4692 8387 1.529244 GTTGCAACAGCCACCTCCT 60.529 57.895 24.52 0.00 0.00 3.69
4705 8400 2.757868 CCACCTCCTGAAGTCAGTCTAG 59.242 54.545 7.51 2.47 42.27 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.947244 GCTAATCCGGCATGGTCTTG 59.053 55.000 0.00 0.00 39.52 3.02
24 25 1.089920 GCATAGCTAATCCGGCATGG 58.910 55.000 0.00 0.00 40.09 3.66
66 67 2.621998 GCCAAGACCATCAATCCATCAG 59.378 50.000 0.00 0.00 0.00 2.90
80 81 2.978010 CACACCACCGGCCAAGAC 60.978 66.667 0.00 0.00 0.00 3.01
83 84 3.484806 AGTCACACCACCGGCCAA 61.485 61.111 0.00 0.00 0.00 4.52
151 153 3.003275 TGACATCGTTGCCTTGAAGAAAC 59.997 43.478 0.00 0.00 0.00 2.78
167 169 6.566197 AGATCAAAGGAAACTGTTGACATC 57.434 37.500 0.00 0.00 42.68 3.06
218 220 1.561643 TGTTGTTGCCTTCCAAACCA 58.438 45.000 0.00 0.00 34.68 3.67
224 240 1.930371 GCGAACATGTTGTTGCCTTCC 60.930 52.381 17.58 0.00 41.28 3.46
257 273 4.183223 AGCCCACTCCAATATGCAAATA 57.817 40.909 0.00 0.00 0.00 1.40
262 278 2.659428 AGAAAGCCCACTCCAATATGC 58.341 47.619 0.00 0.00 0.00 3.14
298 323 7.988737 TCCATAAACATACAAGAGAAGCAATG 58.011 34.615 0.00 0.00 0.00 2.82
413 440 6.126652 ACTGAAAGCTAGAATATGGTCATGGT 60.127 38.462 0.00 0.00 37.60 3.55
417 444 9.330063 CAATAACTGAAAGCTAGAATATGGTCA 57.670 33.333 0.00 0.00 37.60 4.02
511 545 8.608844 AGGACAAAAGTTAAGAATACAGTGAG 57.391 34.615 0.00 0.00 0.00 3.51
526 560 7.665559 TGAACTAGCATGATTAAGGACAAAAGT 59.334 33.333 0.00 0.00 0.00 2.66
527 561 8.044060 TGAACTAGCATGATTAAGGACAAAAG 57.956 34.615 0.00 0.00 0.00 2.27
586 2983 1.072173 CCACTGACATTGGACACAGGA 59.928 52.381 5.94 0.00 36.02 3.86
597 2994 2.029649 GTGCTCAAATTGCCACTGACAT 60.030 45.455 8.59 0.00 0.00 3.06
601 2998 1.338973 ACAGTGCTCAAATTGCCACTG 59.661 47.619 28.18 28.18 41.10 3.66
609 3006 9.066892 TCTTTTAATGAACTACAGTGCTCAAAT 57.933 29.630 0.00 0.00 0.00 2.32
612 3009 8.506437 CATTCTTTTAATGAACTACAGTGCTCA 58.494 33.333 0.00 0.00 0.00 4.26
613 3010 8.507249 ACATTCTTTTAATGAACTACAGTGCTC 58.493 33.333 4.82 0.00 0.00 4.26
644 3041 7.454225 AGGGCATATCCTATCTCTGTAAAAAC 58.546 38.462 0.00 0.00 34.92 2.43
658 3055 6.183361 ACCATATGAAGAAAAGGGCATATCCT 60.183 38.462 3.65 0.00 39.17 3.24
679 3076 9.423061 GTTTCTTCATGCTTACAAAATTACCAT 57.577 29.630 0.00 0.00 0.00 3.55
695 3092 9.388506 ACATGGTATCTAAGAAGTTTCTTCATG 57.611 33.333 19.48 19.48 43.72 3.07
716 3113 5.931724 GGGAAAACATTTTAGACCAACATGG 59.068 40.000 0.00 0.00 45.02 3.66
717 3114 6.646240 CAGGGAAAACATTTTAGACCAACATG 59.354 38.462 0.00 0.00 0.00 3.21
718 3115 6.326323 ACAGGGAAAACATTTTAGACCAACAT 59.674 34.615 0.00 0.00 0.00 2.71
721 3322 6.800072 AACAGGGAAAACATTTTAGACCAA 57.200 33.333 0.00 0.00 0.00 3.67
724 3325 6.280643 AGCAAACAGGGAAAACATTTTAGAC 58.719 36.000 0.00 0.00 0.00 2.59
780 3381 5.010314 ACAATACTAACGACCTGTCTGTCAA 59.990 40.000 0.00 0.00 34.88 3.18
783 3409 6.770746 ATACAATACTAACGACCTGTCTGT 57.229 37.500 0.00 0.00 0.00 3.41
826 3452 1.202698 ACCTGTCTGTCACTGAAAGGC 60.203 52.381 18.76 0.00 39.50 4.35
838 3464 1.268352 GATAGCCTAGCGACCTGTCTG 59.732 57.143 0.00 0.00 0.00 3.51
839 3465 1.611519 GATAGCCTAGCGACCTGTCT 58.388 55.000 0.00 0.00 0.00 3.41
840 3466 0.599060 GGATAGCCTAGCGACCTGTC 59.401 60.000 0.00 0.00 0.00 3.51
841 3467 0.106167 TGGATAGCCTAGCGACCTGT 60.106 55.000 0.00 0.00 34.31 4.00
842 3468 1.261480 ATGGATAGCCTAGCGACCTG 58.739 55.000 0.00 0.00 34.31 4.00
843 3469 2.901338 TATGGATAGCCTAGCGACCT 57.099 50.000 0.00 0.00 34.31 3.85
844 3470 3.090037 TCTTATGGATAGCCTAGCGACC 58.910 50.000 0.00 0.00 34.31 4.79
845 3471 4.993029 ATCTTATGGATAGCCTAGCGAC 57.007 45.455 0.00 0.00 32.04 5.19
846 3472 7.476540 TTTAATCTTATGGATAGCCTAGCGA 57.523 36.000 0.00 0.00 33.71 4.93
847 3473 8.723942 ATTTTAATCTTATGGATAGCCTAGCG 57.276 34.615 0.00 0.00 33.71 4.26
875 3510 6.106673 GCAAATAGTAAGTCACCTTGCTCTA 58.893 40.000 0.00 0.00 41.92 2.43
877 3512 4.095036 GGCAAATAGTAAGTCACCTTGCTC 59.905 45.833 0.00 0.00 41.92 4.26
882 3517 2.241430 GGGGGCAAATAGTAAGTCACCT 59.759 50.000 0.00 0.00 0.00 4.00
884 3519 3.359695 TGGGGGCAAATAGTAAGTCAC 57.640 47.619 0.00 0.00 0.00 3.67
895 3530 1.359474 TGGCTACTTAATGGGGGCAAA 59.641 47.619 0.00 0.00 0.00 3.68
896 3531 1.003646 TGGCTACTTAATGGGGGCAA 58.996 50.000 0.00 0.00 0.00 4.52
926 3561 8.597167 TCCACTTCAGATCTTAAATCTTCAGAA 58.403 33.333 0.00 0.00 0.00 3.02
927 3562 8.138928 TCCACTTCAGATCTTAAATCTTCAGA 57.861 34.615 0.00 0.00 0.00 3.27
928 3563 7.011295 GCTCCACTTCAGATCTTAAATCTTCAG 59.989 40.741 0.00 0.00 0.00 3.02
929 3564 6.820656 GCTCCACTTCAGATCTTAAATCTTCA 59.179 38.462 0.00 0.00 0.00 3.02
930 3565 6.820656 TGCTCCACTTCAGATCTTAAATCTTC 59.179 38.462 0.00 0.00 0.00 2.87
931 3566 6.715280 TGCTCCACTTCAGATCTTAAATCTT 58.285 36.000 0.00 0.00 0.00 2.40
933 3568 6.344500 TCTGCTCCACTTCAGATCTTAAATC 58.656 40.000 0.00 0.00 34.69 2.17
934 3569 6.305272 TCTGCTCCACTTCAGATCTTAAAT 57.695 37.500 0.00 0.00 34.69 1.40
935 3570 5.745312 TCTGCTCCACTTCAGATCTTAAA 57.255 39.130 0.00 0.00 34.69 1.52
937 3572 5.946942 AATCTGCTCCACTTCAGATCTTA 57.053 39.130 5.36 0.00 46.11 2.10
938 3573 4.840716 AATCTGCTCCACTTCAGATCTT 57.159 40.909 5.36 0.00 46.11 2.40
939 3574 4.840716 AAATCTGCTCCACTTCAGATCT 57.159 40.909 5.36 0.00 46.11 2.75
940 3575 6.344500 TCTTAAATCTGCTCCACTTCAGATC 58.656 40.000 5.36 0.00 46.11 2.75
942 3577 5.745312 TCTTAAATCTGCTCCACTTCAGA 57.255 39.130 0.00 0.00 42.72 3.27
943 3578 6.258287 CAGATCTTAAATCTGCTCCACTTCAG 59.742 42.308 11.93 0.00 39.03 3.02
944 3579 6.111382 CAGATCTTAAATCTGCTCCACTTCA 58.889 40.000 11.93 0.00 39.03 3.02
945 3580 5.526846 CCAGATCTTAAATCTGCTCCACTTC 59.473 44.000 16.14 0.00 43.03 3.01
946 3581 5.190528 TCCAGATCTTAAATCTGCTCCACTT 59.809 40.000 16.14 0.00 43.03 3.16
949 3584 4.718774 ACTCCAGATCTTAAATCTGCTCCA 59.281 41.667 16.14 5.32 43.03 3.86
950 3585 5.289083 ACTCCAGATCTTAAATCTGCTCC 57.711 43.478 16.14 0.00 43.03 4.70
951 3586 7.042119 GCTAAACTCCAGATCTTAAATCTGCTC 60.042 40.741 16.14 0.00 43.03 4.26
960 3641 5.459505 AGCTAGGCTAAACTCCAGATCTTA 58.540 41.667 0.00 0.00 36.99 2.10
1016 3697 2.874086 TGTCCTTGATTCATATGCAGCG 59.126 45.455 0.00 0.00 0.00 5.18
1093 3774 7.721399 AGTGTCAAAGAACATAAGAGAATTGGT 59.279 33.333 0.00 0.00 0.00 3.67
1094 3775 8.103948 AGTGTCAAAGAACATAAGAGAATTGG 57.896 34.615 0.00 0.00 0.00 3.16
1095 3776 9.390795 CAAGTGTCAAAGAACATAAGAGAATTG 57.609 33.333 0.00 0.00 0.00 2.32
1097 3778 8.908786 TCAAGTGTCAAAGAACATAAGAGAAT 57.091 30.769 0.00 0.00 0.00 2.40
1107 3808 7.129109 TCCGATAATTCAAGTGTCAAAGAAC 57.871 36.000 0.00 0.00 0.00 3.01
1122 3824 3.950397 TGGTGAAGCACTTCCGATAATT 58.050 40.909 7.88 0.00 38.77 1.40
1130 3832 3.306973 GCAAGTTTTTGGTGAAGCACTTC 59.693 43.478 3.37 3.37 36.20 3.01
1136 3838 5.010012 AGGTATGAGCAAGTTTTTGGTGAAG 59.990 40.000 0.00 0.00 44.54 3.02
1140 3842 4.459337 GCTAGGTATGAGCAAGTTTTTGGT 59.541 41.667 0.00 0.00 46.99 3.67
1141 3843 4.702131 AGCTAGGTATGAGCAAGTTTTTGG 59.298 41.667 0.00 0.00 42.69 3.28
1184 3887 4.368565 AGTTCCTTAACTTCCCCACTTC 57.631 45.455 0.00 0.00 43.60 3.01
1190 3896 6.204301 GTCAAGTTGTAGTTCCTTAACTTCCC 59.796 42.308 2.11 0.00 43.60 3.97
1235 3989 5.428457 TGCTTCTATCAGGGGTTTCATCTTA 59.572 40.000 0.00 0.00 0.00 2.10
1237 3991 3.782523 TGCTTCTATCAGGGGTTTCATCT 59.217 43.478 0.00 0.00 0.00 2.90
1244 3998 0.621571 TGGCTGCTTCTATCAGGGGT 60.622 55.000 0.00 0.00 32.41 4.95
1259 4013 2.928334 CTGCATAAGTCAAGGATGGCT 58.072 47.619 0.00 0.00 45.45 4.75
1266 4020 1.470098 GGTGGTGCTGCATAAGTCAAG 59.530 52.381 5.27 0.00 0.00 3.02
1274 4028 2.598394 GTGGTGGTGGTGCTGCAT 60.598 61.111 5.27 0.00 0.00 3.96
1278 4032 4.204028 GGTGGTGGTGGTGGTGCT 62.204 66.667 0.00 0.00 0.00 4.40
1282 4036 1.152567 AACATGGTGGTGGTGGTGG 60.153 57.895 0.00 0.00 0.00 4.61
1285 4039 2.573083 GGCAACATGGTGGTGGTGG 61.573 63.158 13.78 0.00 37.29 4.61
1286 4040 1.831726 TGGCAACATGGTGGTGGTG 60.832 57.895 13.78 0.00 46.17 4.17
1287 4041 2.605873 TGGCAACATGGTGGTGGT 59.394 55.556 13.78 0.00 46.17 4.16
1301 4055 0.734889 CAATCACCATCTCCGTTGGC 59.265 55.000 0.00 0.00 37.81 4.52
1304 4058 0.744414 CGGCAATCACCATCTCCGTT 60.744 55.000 0.00 0.00 32.93 4.44
1305 4059 1.153369 CGGCAATCACCATCTCCGT 60.153 57.895 0.00 0.00 32.93 4.69
1306 4060 0.250038 ATCGGCAATCACCATCTCCG 60.250 55.000 0.00 0.00 38.34 4.63
1307 4061 1.071385 AGATCGGCAATCACCATCTCC 59.929 52.381 1.70 0.00 36.79 3.71
1308 4062 2.141517 CAGATCGGCAATCACCATCTC 58.858 52.381 1.70 0.00 36.79 2.75
1314 4068 0.734889 CAACCCAGATCGGCAATCAC 59.265 55.000 1.70 0.00 36.79 3.06
1322 4076 0.179089 CAGAGGAGCAACCCAGATCG 60.179 60.000 0.00 0.00 40.05 3.69
1325 4079 2.596851 GCCAGAGGAGCAACCCAGA 61.597 63.158 0.00 0.00 40.05 3.86
1326 4080 2.045536 GCCAGAGGAGCAACCCAG 60.046 66.667 0.00 0.00 40.05 4.45
1331 4085 1.228552 GTTTGGGCCAGAGGAGCAA 60.229 57.895 6.23 0.00 0.00 3.91
1337 4091 0.036388 TTAGAGCGTTTGGGCCAGAG 60.036 55.000 6.23 3.26 0.00 3.35
1339 4093 0.605319 TGTTAGAGCGTTTGGGCCAG 60.605 55.000 6.23 0.00 0.00 4.85
1349 4103 4.260375 GCTATTGACACCAATGTTAGAGCG 60.260 45.833 0.00 0.00 42.55 5.03
1352 4106 5.804639 ACAGCTATTGACACCAATGTTAGA 58.195 37.500 0.00 0.00 42.55 2.10
1356 4110 3.244875 TGGACAGCTATTGACACCAATGT 60.245 43.478 0.00 0.00 42.55 2.71
1359 4113 2.290260 CCTGGACAGCTATTGACACCAA 60.290 50.000 0.00 0.00 36.61 3.67
1364 4118 0.253044 TGGCCTGGACAGCTATTGAC 59.747 55.000 3.32 0.00 0.00 3.18
1367 4121 2.126882 TGTATGGCCTGGACAGCTATT 58.873 47.619 8.85 0.00 33.12 1.73
1369 4123 0.830648 GTGTATGGCCTGGACAGCTA 59.169 55.000 8.85 0.00 0.00 3.32
1370 4124 1.200760 TGTGTATGGCCTGGACAGCT 61.201 55.000 8.85 0.00 0.00 4.24
1373 4127 0.613260 GACTGTGTATGGCCTGGACA 59.387 55.000 3.79 3.79 0.00 4.02
1377 4131 1.730501 CAGTGACTGTGTATGGCCTG 58.269 55.000 3.32 0.00 0.00 4.85
1385 4139 3.694364 CTGAAGGCAGTGACTGTGT 57.306 52.632 14.82 0.00 37.37 3.72
1407 4161 1.275291 CACTTCGGGTGGTGTCTGTAT 59.725 52.381 2.31 0.00 41.90 2.29
1408 4162 0.677288 CACTTCGGGTGGTGTCTGTA 59.323 55.000 2.31 0.00 41.90 2.74
1409 4163 1.445942 CACTTCGGGTGGTGTCTGT 59.554 57.895 2.31 0.00 41.90 3.41
1412 4166 3.771945 ACACACACTTCGGGTGGTGTC 62.772 57.143 19.40 0.00 46.75 3.67
1442 4196 2.751166 AGTCATTGTGAGGAAGGTCG 57.249 50.000 0.00 0.00 0.00 4.79
1452 4206 2.286950 CCACCGTGTTGAAGTCATTGTG 60.287 50.000 0.00 0.00 0.00 3.33
1500 4254 3.621715 GTCACGACAATAGGGTCATTTCC 59.378 47.826 0.00 0.00 37.66 3.13
1501 4255 3.621715 GGTCACGACAATAGGGTCATTTC 59.378 47.826 0.00 0.00 37.66 2.17
1502 4256 3.606687 GGTCACGACAATAGGGTCATTT 58.393 45.455 0.00 0.00 37.66 2.32
1505 4259 0.528924 CGGTCACGACAATAGGGTCA 59.471 55.000 0.00 0.00 44.60 4.02
1506 4260 0.179119 CCGGTCACGACAATAGGGTC 60.179 60.000 0.00 0.00 44.60 4.46
1509 4263 0.245539 ACACCGGTCACGACAATAGG 59.754 55.000 2.59 0.00 44.60 2.57
1510 4264 1.625616 GACACCGGTCACGACAATAG 58.374 55.000 2.59 0.00 43.73 1.73
1511 4265 0.109643 CGACACCGGTCACGACAATA 60.110 55.000 20.71 0.00 44.54 1.90
1512 4266 1.372499 CGACACCGGTCACGACAAT 60.372 57.895 20.71 0.00 44.54 2.71
1529 4286 1.864176 GTAAAACGACCCTGGTGCG 59.136 57.895 0.00 0.10 0.00 5.34
1535 4292 0.245813 GCCTCTCGTAAAACGACCCT 59.754 55.000 0.00 0.00 46.73 4.34
1541 4298 6.472808 CACTAGTGAATAGCCTCTCGTAAAAC 59.527 42.308 18.45 0.00 34.56 2.43
1556 4313 1.630369 TGCAAGGAGCCACTAGTGAAT 59.370 47.619 24.68 11.82 44.83 2.57
1567 4324 0.450983 GCAGACAAGATGCAAGGAGC 59.549 55.000 0.00 0.00 43.31 4.70
1597 4354 1.542492 CTTTGAGAGCCAATGCAGGT 58.458 50.000 0.00 0.00 41.13 4.00
1599 4356 1.201647 CACCTTTGAGAGCCAATGCAG 59.798 52.381 0.00 0.00 41.13 4.41
1613 4370 2.743183 GCAGTGTCAGACTCACACCTTT 60.743 50.000 5.94 0.00 44.55 3.11
1615 4372 0.390860 GCAGTGTCAGACTCACACCT 59.609 55.000 5.94 0.00 44.55 4.00
1623 4380 1.271054 ACCCATTGAGCAGTGTCAGAC 60.271 52.381 0.00 0.00 0.00 3.51
1624 4381 1.059098 ACCCATTGAGCAGTGTCAGA 58.941 50.000 0.00 0.00 0.00 3.27
1625 4382 1.538512 CAACCCATTGAGCAGTGTCAG 59.461 52.381 0.00 0.00 38.15 3.51
1626 4383 1.142667 TCAACCCATTGAGCAGTGTCA 59.857 47.619 0.00 0.00 40.01 3.58
1627 4384 1.896220 TCAACCCATTGAGCAGTGTC 58.104 50.000 0.00 0.00 40.01 3.67
1631 4388 7.245624 TGGAACAAATCAACCCATTGAGCAG 62.246 44.000 0.00 0.00 41.88 4.24
1632 4389 5.480331 TGGAACAAATCAACCCATTGAGCA 61.480 41.667 0.00 0.00 41.88 4.26
1633 4390 3.006752 TGGAACAAATCAACCCATTGAGC 59.993 43.478 0.00 0.00 41.88 4.26
1634 4391 4.870123 TGGAACAAATCAACCCATTGAG 57.130 40.909 0.00 0.00 41.88 3.02
1635 4392 5.822132 AATGGAACAAATCAACCCATTGA 57.178 34.783 0.00 0.00 46.56 2.57
1673 4430 5.049267 TCACACGTAAAGATAAGGTTTTGCC 60.049 40.000 0.00 0.00 37.58 4.52
1674 4431 5.992729 TCACACGTAAAGATAAGGTTTTGC 58.007 37.500 0.00 0.00 0.00 3.68
1678 4435 6.205853 TGCAATTCACACGTAAAGATAAGGTT 59.794 34.615 0.00 0.00 0.00 3.50
1682 4439 8.858003 TTTTTGCAATTCACACGTAAAGATAA 57.142 26.923 0.00 0.00 0.00 1.75
1733 4491 6.038050 ACAAATTCGTAAACCCGTGTTTTCTA 59.962 34.615 0.25 0.00 41.92 2.10
1743 4501 2.554893 TCTGGCACAAATTCGTAAACCC 59.445 45.455 0.00 0.00 38.70 4.11
1767 4525 3.084786 AGTTTAGGCCAGAAATCAGTGC 58.915 45.455 5.01 0.00 0.00 4.40
1795 4555 5.182001 CCCAAAGAGATCGATCAGTGTTTTT 59.818 40.000 26.47 10.87 0.00 1.94
1809 4569 4.273318 GTGGTTAAGATGCCCAAAGAGAT 58.727 43.478 0.00 0.00 0.00 2.75
1823 4585 5.007626 CCCACATGTCATAATCGTGGTTAAG 59.992 44.000 15.38 1.46 44.60 1.85
1858 4620 2.487762 CCAACAATTATGCCACGTCAGT 59.512 45.455 0.00 0.00 0.00 3.41
1940 4703 1.146041 AGTTCTGTGCACGGCTTGA 59.854 52.632 21.33 6.51 0.00 3.02
1949 4712 2.802816 ACATCGTTCTTCAGTTCTGTGC 59.197 45.455 0.00 0.00 0.00 4.57
1950 4713 3.804325 ACACATCGTTCTTCAGTTCTGTG 59.196 43.478 0.00 0.00 38.86 3.66
1951 4714 4.051922 GACACATCGTTCTTCAGTTCTGT 58.948 43.478 0.00 0.00 0.00 3.41
1952 4715 3.120286 CGACACATCGTTCTTCAGTTCTG 59.880 47.826 0.00 0.00 43.66 3.02
1953 4716 3.309388 CGACACATCGTTCTTCAGTTCT 58.691 45.455 0.00 0.00 43.66 3.01
1954 4717 3.689897 CGACACATCGTTCTTCAGTTC 57.310 47.619 0.00 0.00 43.66 3.01
1966 4729 0.108186 TCCATGAGCACCGACACATC 60.108 55.000 0.00 0.00 0.00 3.06
1967 4730 0.543277 ATCCATGAGCACCGACACAT 59.457 50.000 0.00 0.00 0.00 3.21
1968 4731 0.108186 GATCCATGAGCACCGACACA 60.108 55.000 0.00 0.00 0.00 3.72
1969 4732 0.176680 AGATCCATGAGCACCGACAC 59.823 55.000 0.00 0.00 0.00 3.67
1970 4733 0.461548 GAGATCCATGAGCACCGACA 59.538 55.000 0.00 0.00 0.00 4.35
1971 4734 0.461548 TGAGATCCATGAGCACCGAC 59.538 55.000 0.00 0.00 0.00 4.79
1972 4735 1.342496 GATGAGATCCATGAGCACCGA 59.658 52.381 0.00 0.00 35.17 4.69
1973 4736 1.793258 GATGAGATCCATGAGCACCG 58.207 55.000 0.00 0.00 35.17 4.94
1974 4737 1.793258 CGATGAGATCCATGAGCACC 58.207 55.000 0.00 0.00 35.17 5.01
1975 4738 1.146637 GCGATGAGATCCATGAGCAC 58.853 55.000 0.00 0.00 36.28 4.40
1976 4739 0.034476 GGCGATGAGATCCATGAGCA 59.966 55.000 15.92 0.00 37.29 4.26
1977 4740 1.013005 CGGCGATGAGATCCATGAGC 61.013 60.000 0.00 6.92 35.17 4.26
1978 4741 0.389556 CCGGCGATGAGATCCATGAG 60.390 60.000 9.30 0.00 35.17 2.90
1979 4742 1.667722 CCGGCGATGAGATCCATGA 59.332 57.895 9.30 0.00 35.17 3.07
1980 4743 2.031516 GCCGGCGATGAGATCCATG 61.032 63.158 12.58 0.00 35.17 3.66
1981 4744 2.345244 GCCGGCGATGAGATCCAT 59.655 61.111 12.58 0.00 38.43 3.41
1982 4745 3.928779 GGCCGGCGATGAGATCCA 61.929 66.667 22.54 0.00 0.00 3.41
1983 4746 3.245668 ATGGCCGGCGATGAGATCC 62.246 63.158 24.25 4.73 0.00 3.36
1984 4747 2.031516 CATGGCCGGCGATGAGATC 61.032 63.158 39.19 16.33 34.70 2.75
1985 4748 2.031616 CATGGCCGGCGATGAGAT 59.968 61.111 39.19 10.84 34.70 2.75
1986 4749 4.916293 GCATGGCCGGCGATGAGA 62.916 66.667 43.88 16.16 34.70 3.27
2009 4772 4.840005 CCTTCTCCCTTCGGGCGC 62.840 72.222 0.00 0.00 43.94 6.53
2010 4773 4.162690 CCCTTCTCCCTTCGGGCG 62.163 72.222 0.00 0.00 43.94 6.13
2011 4774 3.798511 CCCCTTCTCCCTTCGGGC 61.799 72.222 0.00 0.00 43.94 6.13
2012 4775 3.798511 GCCCCTTCTCCCTTCGGG 61.799 72.222 0.00 0.00 46.11 5.14
2013 4776 4.162690 CGCCCCTTCTCCCTTCGG 62.163 72.222 0.00 0.00 0.00 4.30
2014 4777 4.162690 CCGCCCCTTCTCCCTTCG 62.163 72.222 0.00 0.00 0.00 3.79
2015 4778 4.491409 GCCGCCCCTTCTCCCTTC 62.491 72.222 0.00 0.00 0.00 3.46
2100 4863 2.305127 GCAACGCAAAAGCAGCAGG 61.305 57.895 0.00 0.00 0.00 4.85
2146 5066 1.377994 CAGAAGCAGGGGAGCAAGT 59.622 57.895 0.00 0.00 36.85 3.16
2179 5227 2.967397 GGCAGCAGCAATGAAGCA 59.033 55.556 2.65 0.00 44.61 3.91
2180 5228 2.202570 CGGCAGCAGCAATGAAGC 60.203 61.111 2.65 0.00 44.61 3.86
2181 5229 2.202570 GCGGCAGCAGCAATGAAG 60.203 61.111 13.20 0.00 44.61 3.02
2250 5441 3.033184 CAGCAACGGAGCAAGCAA 58.967 55.556 4.18 0.00 36.85 3.91
2337 5562 2.356278 GGATCCAGGGCTTGCACA 59.644 61.111 6.95 0.00 0.00 4.57
2343 5568 4.458829 TCGTCGGGATCCAGGGCT 62.459 66.667 15.23 0.00 0.00 5.19
2426 5651 3.554342 CCTGCCCCGATCCAGAGG 61.554 72.222 0.00 0.00 0.00 3.69
2440 5665 3.817647 CCAAAAACAACTCTCTCTCCCTG 59.182 47.826 0.00 0.00 0.00 4.45
2441 5666 3.181439 CCCAAAAACAACTCTCTCTCCCT 60.181 47.826 0.00 0.00 0.00 4.20
2447 5672 2.783510 TCCCTCCCAAAAACAACTCTCT 59.216 45.455 0.00 0.00 0.00 3.10
2574 5799 2.884639 CCCGAAAACACTGATTCTTGGT 59.115 45.455 0.00 0.00 0.00 3.67
2588 5814 5.400703 GGTTTACGAATTTATGCCCGAAAA 58.599 37.500 0.00 0.00 0.00 2.29
2593 5819 2.684374 ACGGGTTTACGAATTTATGCCC 59.316 45.455 0.00 0.00 37.61 5.36
2598 5824 6.428799 CAGAAAACACGGGTTTACGAATTTA 58.571 36.000 17.63 0.00 46.20 1.40
2682 5908 7.251994 CGAGATCTTGTTACTAGTAAGCACTT 58.748 38.462 15.68 1.75 36.14 3.16
2692 5918 4.818005 TCATACGCCGAGATCTTGTTACTA 59.182 41.667 9.19 0.00 0.00 1.82
2705 5931 1.540146 CCCATCAATGTCATACGCCGA 60.540 52.381 0.00 0.00 0.00 5.54
2724 5950 2.573941 CTTTTGAAGCCTAGCATGCC 57.426 50.000 15.66 0.00 0.00 4.40
2738 5964 4.253685 TCAAAGACGATAGGGAGCTTTTG 58.746 43.478 0.00 0.00 43.77 2.44
2742 5968 2.035632 CCTCAAAGACGATAGGGAGCT 58.964 52.381 0.00 0.00 43.77 4.09
2769 5995 6.183360 TGTGAAATCTTTCCTGAACTGTTGTC 60.183 38.462 0.00 0.00 36.36 3.18
2803 6029 5.382618 ACAATTCTTTGGCTCTTAGCTTG 57.617 39.130 0.00 0.00 41.99 4.01
2822 6048 0.613260 CATCCGACCTCCTGGAACAA 59.387 55.000 0.00 0.00 38.70 2.83
2823 6049 1.264749 CCATCCGACCTCCTGGAACA 61.265 60.000 0.00 0.00 37.90 3.18
2849 6076 1.219393 GAACGCCTCCCTGGAAGAG 59.781 63.158 0.00 0.00 38.35 2.85
2868 6095 5.106791 ACAGAATTCAGAAGCAAGTTCATCG 60.107 40.000 8.44 0.00 37.67 3.84
2872 6099 5.447573 GTGACAGAATTCAGAAGCAAGTTC 58.552 41.667 8.44 0.00 35.08 3.01
2899 6126 1.755179 ATCTGAGCCAATGTTTCCCG 58.245 50.000 0.00 0.00 0.00 5.14
2907 6134 4.323417 TGACACGTAAAATCTGAGCCAAT 58.677 39.130 0.00 0.00 0.00 3.16
2933 6160 1.115930 AGGGCAGCGTACCTCTATGG 61.116 60.000 0.00 0.00 42.93 2.74
2943 6170 3.072211 GTTAGAAAAGTAAGGGCAGCGT 58.928 45.455 0.00 0.00 0.00 5.07
2948 6175 6.944234 ATGCTATGTTAGAAAAGTAAGGGC 57.056 37.500 0.00 0.00 0.00 5.19
2970 6197 9.935682 CGTGAGTTTGTTAGCAAATCATATAAT 57.064 29.630 8.05 0.00 45.11 1.28
2971 6198 9.157104 TCGTGAGTTTGTTAGCAAATCATATAA 57.843 29.630 8.05 0.18 45.11 0.98
2988 6217 8.450964 CCACAAATATCAAATAGTCGTGAGTTT 58.549 33.333 0.00 0.00 0.00 2.66
2992 6221 7.327975 AGACCACAAATATCAAATAGTCGTGA 58.672 34.615 0.00 0.00 0.00 4.35
3008 6237 4.998672 CCGATAGTACCAAAAGACCACAAA 59.001 41.667 0.00 0.00 0.00 2.83
3009 6238 4.040706 ACCGATAGTACCAAAAGACCACAA 59.959 41.667 0.00 0.00 0.00 3.33
3025 6254 4.395625 TGTCTATCACACCCTACCGATAG 58.604 47.826 0.00 0.00 39.02 2.08
3029 6258 2.619177 CTCTGTCTATCACACCCTACCG 59.381 54.545 0.00 0.00 0.00 4.02
3043 6272 8.688747 AGAAAGAATCAAATTTCACTCTGTCT 57.311 30.769 0.00 0.00 37.78 3.41
3055 6284 8.525316 TGCATTGACACATAGAAAGAATCAAAT 58.475 29.630 0.00 0.00 0.00 2.32
3061 6290 5.945191 TCCATGCATTGACACATAGAAAGAA 59.055 36.000 0.00 0.00 0.00 2.52
3074 6303 0.703488 TGGGAAGGTCCATGCATTGA 59.297 50.000 0.00 0.00 38.64 2.57
3091 6320 2.775911 TCACCTTCAGCTCTTCATGG 57.224 50.000 0.00 0.00 0.00 3.66
3092 6321 3.870274 TGATCACCTTCAGCTCTTCATG 58.130 45.455 0.00 0.00 0.00 3.07
3100 6329 4.940046 TCTTCTTGAATGATCACCTTCAGC 59.060 41.667 10.74 0.00 34.61 4.26
3105 6334 5.768980 TCCTTCTTCTTGAATGATCACCT 57.231 39.130 0.00 0.00 34.61 4.00
3115 6344 7.161404 TGATCGAAAAAGATCCTTCTTCTTGA 58.839 34.615 0.00 0.00 44.72 3.02
3127 6356 5.181009 TGCATCTCACTGATCGAAAAAGAT 58.819 37.500 0.00 0.00 32.05 2.40
3135 6364 1.568606 CACCTGCATCTCACTGATCG 58.431 55.000 0.00 0.00 32.05 3.69
3136 6365 1.297664 GCACCTGCATCTCACTGATC 58.702 55.000 0.00 0.00 41.59 2.92
3170 6399 0.606130 ATGAGCGCATTGTCCACACA 60.606 50.000 11.47 0.00 0.00 3.72
3178 6407 1.314534 TTGGGACCATGAGCGCATTG 61.315 55.000 11.47 0.00 30.68 2.82
3182 6411 0.179045 ATACTTGGGACCATGAGCGC 60.179 55.000 0.00 0.00 0.00 5.92
3200 6429 3.806521 GCTCTCATCATACTTGCGAACAT 59.193 43.478 0.00 0.00 0.00 2.71
3201 6430 3.190079 GCTCTCATCATACTTGCGAACA 58.810 45.455 0.00 0.00 0.00 3.18
3205 6434 1.135046 CGGCTCTCATCATACTTGCG 58.865 55.000 0.00 0.00 0.00 4.85
3210 6439 4.387256 GCTCAAATACGGCTCTCATCATAC 59.613 45.833 0.00 0.00 0.00 2.39
3301 6530 3.850098 CTCCAAGCTGCCCGGTTGT 62.850 63.158 0.00 0.00 46.89 3.32
3319 6548 0.596577 GGTTTCCCGCAACTTCTTCC 59.403 55.000 0.00 0.00 0.00 3.46
3331 6560 1.134189 AGCATAACTAGCGGGTTTCCC 60.134 52.381 2.98 0.00 41.09 3.97
3389 6618 7.216494 ACAAAAAGGCAAGCAAGTATAAACAT 58.784 30.769 0.00 0.00 0.00 2.71
3408 6637 7.111466 AGGTGTGTAGTGTACCTTTACAAAAA 58.889 34.615 0.00 0.00 41.93 1.94
3476 6708 0.251922 AGGGGCGTAACAGGTCACTA 60.252 55.000 0.00 0.00 0.00 2.74
3496 6728 8.740906 TCTCAAGACACACTATAACCTCTTAAG 58.259 37.037 0.00 0.00 0.00 1.85
3539 6771 8.971321 GTTAAATAATGAAGTGCTATGCATTGG 58.029 33.333 3.54 0.00 41.91 3.16
3663 6898 7.722795 TCTTCAGAAACAAATAACACATCGA 57.277 32.000 0.00 0.00 0.00 3.59
3728 6963 3.006967 TCCCTGCAGTCTCTTGTAAGTTC 59.993 47.826 13.81 0.00 0.00 3.01
3789 7024 2.656069 TTACAGTCTCGGGCAGCCC 61.656 63.158 22.33 22.33 41.09 5.19
3791 7026 1.014564 GTGTTACAGTCTCGGGCAGC 61.015 60.000 0.00 0.00 0.00 5.25
3885 7126 6.476380 CGCCATGACTAACATTGCAATAAAAT 59.524 34.615 12.53 1.33 44.54 1.82
3893 7134 2.458592 GTCGCCATGACTAACATTGC 57.541 50.000 0.00 0.00 44.58 3.56
3936 7185 8.806429 ACATTGTTATGGAATAGATCACACAA 57.194 30.769 0.00 0.00 36.01 3.33
3967 7216 8.870075 AAGAATAAGAGCAGTAAATTGGAGTT 57.130 30.769 0.00 0.00 0.00 3.01
4050 7299 7.586747 TGTTTTACCGAAATTTCCAGTACATC 58.413 34.615 12.54 7.60 0.00 3.06
4177 7429 9.499585 CTGTCAATGCTAGAGATTGTATTTTTG 57.500 33.333 12.28 0.00 33.33 2.44
4197 7449 5.105106 TCGGATAAGAATAACAGCCTGTCAA 60.105 40.000 0.00 0.00 0.00 3.18
4240 7492 2.097466 GGTGCAATGATAAGGTCAACGG 59.903 50.000 0.00 0.00 40.97 4.44
4253 7521 0.171903 GCTGCTTACTGGGTGCAATG 59.828 55.000 0.00 0.00 36.22 2.82
4311 7579 1.000938 GCTTGCAAACTCCAAGTCCAG 60.001 52.381 0.00 0.00 41.27 3.86
4314 7582 2.869233 TTGCTTGCAAACTCCAAGTC 57.131 45.000 5.49 0.00 41.27 3.01
4319 7587 0.104671 TGCCTTTGCTTGCAAACTCC 59.895 50.000 15.66 8.28 38.71 3.85
4320 7588 1.796459 CATGCCTTTGCTTGCAAACTC 59.204 47.619 15.66 10.93 41.50 3.01
4341 7609 3.567164 CAGCAGACTTGTCATTTTGAGGT 59.433 43.478 3.49 0.00 0.00 3.85
4409 7679 7.565323 AAGATTAGGTCAAATTCAGATCAGC 57.435 36.000 0.00 0.00 0.00 4.26
4441 7711 0.037790 GGGACAGCTCACAGACAGAC 60.038 60.000 0.00 0.00 0.00 3.51
4449 7719 1.406614 CCAATCTGAGGGACAGCTCAC 60.407 57.143 0.00 0.00 45.38 3.51
4505 7786 0.036952 ACCCGAGAGAGCAACATGTG 60.037 55.000 0.00 0.00 0.00 3.21
4510 7791 1.433534 CTTGAACCCGAGAGAGCAAC 58.566 55.000 0.00 0.00 0.00 4.17
4562 7935 5.621193 CATACTCCCTCCGTTCCATAATTT 58.379 41.667 0.00 0.00 0.00 1.82
4621 8281 1.450134 CAGCCCAAGTGCGCTATCA 60.450 57.895 9.73 0.00 36.02 2.15
4647 8342 0.760567 AGTGACTGCAGGTGTCCTCA 60.761 55.000 19.93 8.56 33.83 3.86
4652 8347 2.092968 TGAAGAAAGTGACTGCAGGTGT 60.093 45.455 19.93 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.