Multiple sequence alignment - TraesCS3A01G470700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G470700 chr3A 100.000 3425 0 0 1 3425 702552735 702556159 0.000000e+00 6325.0
1 TraesCS3A01G470700 chr3A 92.929 99 6 1 2898 2996 61800370 61800467 3.560000e-30 143.0
2 TraesCS3A01G470700 chr3A 91.919 99 7 1 3324 3421 655631683 655631781 1.660000e-28 137.0
3 TraesCS3A01G470700 chr3A 90.000 100 10 0 979 1078 655886632 655886533 2.770000e-26 130.0
4 TraesCS3A01G470700 chr3A 87.069 116 11 3 3309 3424 702917732 702917621 9.980000e-26 128.0
5 TraesCS3A01G470700 chr3A 88.073 109 9 2 3317 3425 655572392 655572496 3.590000e-25 126.0
6 TraesCS3A01G470700 chr3A 91.398 93 7 1 3333 3424 655886634 655886542 3.590000e-25 126.0
7 TraesCS3A01G470700 chr3A 92.308 65 4 1 3071 3135 61800473 61800536 1.310000e-14 91.6
8 TraesCS3A01G470700 chr3D 90.982 1985 142 20 939 2902 569900168 569902136 0.000000e+00 2639.0
9 TraesCS3A01G470700 chr3D 87.165 522 33 17 948 1445 567400217 567399706 2.310000e-156 562.0
10 TraesCS3A01G470700 chr3D 88.679 424 39 7 449 871 569899653 569900068 3.050000e-140 508.0
11 TraesCS3A01G470700 chr3D 93.651 315 20 0 17 331 569899292 569899606 4.000000e-129 472.0
12 TraesCS3A01G470700 chr3D 92.086 278 10 6 78 346 567408313 567408039 6.940000e-102 381.0
13 TraesCS3A01G470700 chr3D 84.727 275 35 6 600 871 25941911 25941641 5.630000e-68 268.0
14 TraesCS3A01G470700 chr3D 91.228 171 15 0 2898 3068 569904495 569904665 2.060000e-57 233.0
15 TraesCS3A01G470700 chr3D 95.726 117 5 0 3309 3425 567842316 567842432 4.510000e-44 189.0
16 TraesCS3A01G470700 chr3D 88.073 109 9 2 3317 3425 520153031 520153135 3.590000e-25 126.0
17 TraesCS3A01G470700 chr3D 78.355 231 17 14 3075 3280 569904876 569905098 6.000000e-23 119.0
18 TraesCS3A01G470700 chr3D 81.250 144 24 2 3140 3281 567842100 567842242 2.790000e-21 113.0
19 TraesCS3A01G470700 chr3D 79.577 142 18 6 1181 1314 520153268 520153406 1.310000e-14 91.6
20 TraesCS3A01G470700 chr3D 100.000 37 0 0 17 53 567408343 567408307 6.130000e-08 69.4
21 TraesCS3A01G470700 chrUn 87.040 1605 161 28 1335 2902 341148701 341147107 0.000000e+00 1768.0
22 TraesCS3A01G470700 chrUn 86.913 1597 166 25 1335 2896 287225064 287226652 0.000000e+00 1751.0
23 TraesCS3A01G470700 chrUn 86.913 1597 166 25 1335 2896 287476962 287478550 0.000000e+00 1751.0
24 TraesCS3A01G470700 chrUn 86.913 1597 166 25 1335 2896 323542291 323540703 0.000000e+00 1751.0
25 TraesCS3A01G470700 chrUn 89.675 707 60 5 1173 1869 311734908 311735611 0.000000e+00 889.0
26 TraesCS3A01G470700 chrUn 89.675 707 60 5 1173 1869 311738782 311739485 0.000000e+00 889.0
27 TraesCS3A01G470700 chrUn 79.720 1144 150 45 117 1194 311737618 311738745 0.000000e+00 752.0
28 TraesCS3A01G470700 chrUn 79.910 1115 146 42 145 1194 311733770 311734871 0.000000e+00 747.0
29 TraesCS3A01G470700 chrUn 81.453 523 59 20 599 1088 474549687 474549170 8.910000e-106 394.0
30 TraesCS3A01G470700 chrUn 100.000 55 0 0 3081 3135 67445136 67445082 6.050000e-18 102.0
31 TraesCS3A01G470700 chrUn 96.721 61 2 0 3075 3135 337805664 337805724 6.050000e-18 102.0
32 TraesCS3A01G470700 chr3B 88.913 1362 131 13 1226 2577 756613654 756615005 0.000000e+00 1661.0
33 TraesCS3A01G470700 chr3B 80.702 570 68 21 577 1110 756612779 756613342 4.120000e-109 405.0
34 TraesCS3A01G470700 chr5D 75.635 1141 225 28 1247 2355 297737141 297738260 5.070000e-143 518.0
35 TraesCS3A01G470700 chr5D 88.793 116 9 1 3309 3424 297736842 297736953 4.610000e-29 139.0
36 TraesCS3A01G470700 chr7B 91.228 171 15 0 2898 3068 656234561 656234731 2.060000e-57 233.0
37 TraesCS3A01G470700 chr7B 90.058 171 17 0 2898 3068 656263861 656264031 4.450000e-54 222.0
38 TraesCS3A01G470700 chr7B 88.957 163 17 1 2907 3068 614554116 614554278 2.080000e-47 200.0
39 TraesCS3A01G470700 chr7B 98.276 58 1 0 3078 3135 614554466 614554523 6.050000e-18 102.0
40 TraesCS3A01G470700 chr7D 83.806 247 32 6 628 871 435723430 435723189 9.560000e-56 228.0
41 TraesCS3A01G470700 chr5A 90.643 171 15 1 2898 3068 709003328 709003497 3.440000e-55 226.0
42 TraesCS3A01G470700 chr5A 88.793 116 9 1 3309 3424 401317693 401317582 4.610000e-29 139.0
43 TraesCS3A01G470700 chr7A 93.939 99 6 0 2898 2996 720591030 720590932 2.130000e-32 150.0
44 TraesCS3A01G470700 chr7A 100.000 55 0 0 3081 3135 720590916 720590862 6.050000e-18 102.0
45 TraesCS3A01G470700 chr1A 93.939 99 6 0 2898 2996 331636962 331636864 2.130000e-32 150.0
46 TraesCS3A01G470700 chr1A 93.478 92 6 0 2898 2989 528587760 528587851 1.660000e-28 137.0
47 TraesCS3A01G470700 chr1A 96.721 61 2 0 3075 3135 528587866 528587926 6.050000e-18 102.0
48 TraesCS3A01G470700 chr1A 96.364 55 2 0 3081 3135 331636848 331636794 1.310000e-14 91.6
49 TraesCS3A01G470700 chr5B 88.889 117 9 1 3309 3425 338481228 338481340 1.280000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G470700 chr3A 702552735 702556159 3424 False 6325.00 6325 100.0000 1 3425 1 chr3A.!!$F3 3424
1 TraesCS3A01G470700 chr3D 569899292 569905098 5806 False 794.20 2639 88.5790 17 3280 5 chr3D.!!$F3 3263
2 TraesCS3A01G470700 chr3D 567399706 567400217 511 True 562.00 562 87.1650 948 1445 1 chr3D.!!$R2 497
3 TraesCS3A01G470700 chrUn 341147107 341148701 1594 True 1768.00 1768 87.0400 1335 2902 1 chrUn.!!$R3 1567
4 TraesCS3A01G470700 chrUn 287225064 287226652 1588 False 1751.00 1751 86.9130 1335 2896 1 chrUn.!!$F1 1561
5 TraesCS3A01G470700 chrUn 287476962 287478550 1588 False 1751.00 1751 86.9130 1335 2896 1 chrUn.!!$F2 1561
6 TraesCS3A01G470700 chrUn 323540703 323542291 1588 True 1751.00 1751 86.9130 1335 2896 1 chrUn.!!$R2 1561
7 TraesCS3A01G470700 chrUn 311733770 311739485 5715 False 819.25 889 84.7450 117 1869 4 chrUn.!!$F4 1752
8 TraesCS3A01G470700 chrUn 474549170 474549687 517 True 394.00 394 81.4530 599 1088 1 chrUn.!!$R4 489
9 TraesCS3A01G470700 chr3B 756612779 756615005 2226 False 1033.00 1661 84.8075 577 2577 2 chr3B.!!$F1 2000
10 TraesCS3A01G470700 chr5D 297736842 297738260 1418 False 328.50 518 82.2140 1247 3424 2 chr5D.!!$F1 2177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 459 0.539438 TGACCACCTGCACCATTTCC 60.539 55.0 0.0 0.0 0.00 3.13 F
924 1009 0.990374 GCCATCCCCAGATAGCAGAT 59.010 55.0 0.0 0.0 37.13 2.90 F
1493 5694 0.033504 ATGCGTGTTCCTCAACGACT 59.966 50.0 0.0 0.0 34.95 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 5675 0.033504 AGTCGTTGAGGAACACGCAT 59.966 50.0 0.0 0.0 31.78 4.73 R
1795 6003 0.690762 AGGGAGCTTTTCACGCCTAA 59.309 50.0 0.0 0.0 33.09 2.69 R
3192 10045 0.034380 TAGCCTAGCGACCTGTCTGT 60.034 55.0 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.357878 TCATTATCCAACAAGCTCATGGTTC 59.642 40.000 11.00 0.00 35.66 3.62
33 34 1.070758 ACAAGCTCATGGTTCTCGTGT 59.929 47.619 0.00 0.00 34.14 4.49
38 39 2.744202 GCTCATGGTTCTCGTGTTGATT 59.256 45.455 0.00 0.00 34.14 2.57
50 51 5.067413 TCTCGTGTTGATTATACTCCTGGTC 59.933 44.000 0.00 0.00 0.00 4.02
55 56 6.535508 GTGTTGATTATACTCCTGGTCAGAAC 59.464 42.308 0.00 0.00 0.00 3.01
115 116 7.251321 AGGTGATTAAGATATGATCAGACCC 57.749 40.000 0.09 0.00 34.97 4.46
153 154 4.279420 TGGTCAGATCATCCTTCTACATCG 59.721 45.833 0.00 0.00 0.00 3.84
204 205 6.419710 GGGTAGAAAGTTGACCAAAATTTTCG 59.580 38.462 0.00 0.00 36.25 3.46
217 218 4.853924 AAATTTTCGCACCACTCTTCAT 57.146 36.364 0.00 0.00 0.00 2.57
224 225 2.011046 GCACCACTCTTCATCTCTGGC 61.011 57.143 0.00 0.00 0.00 4.85
253 254 8.387190 TGATTGATTCATATCACCTCATTCAC 57.613 34.615 7.16 0.00 40.42 3.18
338 340 8.124808 ACACTCTACCAAAACTTTTTAACCAA 57.875 30.769 0.00 0.00 0.00 3.67
359 361 6.076032 CCAAATAATGGCCGAAAACGAAAGT 61.076 40.000 0.00 0.00 45.91 2.66
401 416 1.082117 GCCATCCCTGTACAACGTCG 61.082 60.000 0.00 0.00 0.00 5.12
414 429 3.968649 ACAACGTCGCACTTAAGACTTA 58.031 40.909 10.09 0.00 35.38 2.24
416 431 5.702865 ACAACGTCGCACTTAAGACTTATA 58.297 37.500 10.09 0.00 35.38 0.98
421 436 7.130917 ACGTCGCACTTAAGACTTATACATAG 58.869 38.462 10.09 0.00 35.38 2.23
435 450 1.755179 ACATAGCATTGACCACCTGC 58.245 50.000 0.00 0.00 36.15 4.85
442 457 1.619827 CATTGACCACCTGCACCATTT 59.380 47.619 0.00 0.00 0.00 2.32
444 459 0.539438 TGACCACCTGCACCATTTCC 60.539 55.000 0.00 0.00 0.00 3.13
446 461 1.984026 CCACCTGCACCATTTCCCC 60.984 63.158 0.00 0.00 0.00 4.81
497 560 5.063180 TCATTATTTGGCTGCTTGAAGTG 57.937 39.130 0.00 0.00 0.00 3.16
503 566 1.648720 GCTGCTTGAAGTGTTCGCA 59.351 52.632 0.00 0.00 0.00 5.10
509 572 4.002982 TGCTTGAAGTGTTCGCATTATCT 58.997 39.130 0.00 0.00 0.00 1.98
726 791 5.964758 TGTCTGAAATGTTTGCTTTTGACT 58.035 33.333 0.00 0.00 0.00 3.41
729 794 7.387397 TGTCTGAAATGTTTGCTTTTGACTTTT 59.613 29.630 0.00 0.00 0.00 2.27
735 800 7.913674 ATGTTTGCTTTTGACTTTTAAACCA 57.086 28.000 0.00 0.00 0.00 3.67
737 802 7.577107 TGTTTGCTTTTGACTTTTAAACCAAC 58.423 30.769 0.00 0.00 0.00 3.77
738 803 7.226720 TGTTTGCTTTTGACTTTTAAACCAACA 59.773 29.630 0.00 0.00 0.00 3.33
740 805 7.301068 TGCTTTTGACTTTTAAACCAACATG 57.699 32.000 0.00 0.00 0.00 3.21
744 809 8.485976 TTTTGACTTTTAAACCAACATGGAAG 57.514 30.769 2.85 0.00 40.96 3.46
764 829 4.307032 AGAGCCAACTCAATGTAACCAT 57.693 40.909 0.00 0.00 46.09 3.55
806 871 7.620880 TGCTCATCTAAAACAACCACTACTAT 58.379 34.615 0.00 0.00 0.00 2.12
811 876 9.436957 CATCTAAAACAACCACTACTATTGACT 57.563 33.333 0.00 0.00 0.00 3.41
898 983 5.296151 TCTATTGTCTGGCTTAAGATGGG 57.704 43.478 6.67 0.00 0.00 4.00
916 1001 1.635817 GGTAAGCAGCCATCCCCAGA 61.636 60.000 0.00 0.00 0.00 3.86
924 1009 0.990374 GCCATCCCCAGATAGCAGAT 59.010 55.000 0.00 0.00 37.13 2.90
930 1015 3.122480 TCCCCAGATAGCAGATGGAAAA 58.878 45.455 0.00 0.00 36.09 2.29
931 1016 3.723681 TCCCCAGATAGCAGATGGAAAAT 59.276 43.478 0.00 0.00 36.09 1.82
933 1018 5.372363 TCCCCAGATAGCAGATGGAAAATAA 59.628 40.000 0.00 0.00 36.09 1.40
934 1019 5.709164 CCCCAGATAGCAGATGGAAAATAAG 59.291 44.000 0.00 0.00 36.09 1.73
936 1021 7.000472 CCCAGATAGCAGATGGAAAATAAGAA 59.000 38.462 0.00 0.00 36.09 2.52
938 1023 9.075678 CCAGATAGCAGATGGAAAATAAGAATT 57.924 33.333 0.00 0.00 36.09 2.17
1079 1187 3.804325 CGCAACTCTGGTATTCAGGTATG 59.196 47.826 0.00 0.00 43.53 2.39
1085 1193 8.367911 CAACTCTGGTATTCAGGTATGCTATTA 58.632 37.037 0.00 0.00 43.53 0.98
1161 1286 2.861462 TTCTGTTTTTGCGGGAGTTG 57.139 45.000 0.00 0.00 0.00 3.16
1207 1526 9.755804 GAAATTCAAAAGAAGAAATGAGGAAGT 57.244 29.630 0.00 0.00 0.00 3.01
1208 1527 9.755804 AAATTCAAAAGAAGAAATGAGGAAGTC 57.244 29.630 0.00 0.00 0.00 3.01
1356 1683 2.287608 GCAGCACCTTGTTACCTGAAAC 60.288 50.000 0.00 0.00 0.00 2.78
1357 1684 2.948979 CAGCACCTTGTTACCTGAAACA 59.051 45.455 0.00 0.00 37.58 2.83
1419 1746 1.945354 CTGGCACTGGTATCGGTCGT 61.945 60.000 0.00 0.00 0.00 4.34
1474 5675 3.390521 CAGCCACCACCGGAGCTA 61.391 66.667 9.46 0.00 35.03 3.32
1477 5678 2.203070 CCACCACCGGAGCTATGC 60.203 66.667 9.46 0.00 0.00 3.14
1493 5694 0.033504 ATGCGTGTTCCTCAACGACT 59.966 50.000 0.00 0.00 34.95 4.18
1512 5713 1.261619 CTTGCCTGACAACGACTTCAC 59.738 52.381 0.00 0.00 33.68 3.18
1513 5714 0.464036 TGCCTGACAACGACTTCACT 59.536 50.000 0.00 0.00 0.00 3.41
1516 5717 2.545113 GCCTGACAACGACTTCACTACA 60.545 50.000 0.00 0.00 0.00 2.74
1573 5777 2.732016 CCTGTTGTCGTGACGGGA 59.268 61.111 4.70 0.00 44.70 5.14
1594 5798 1.742510 CGCACCGGGGTCGTTTTAT 60.743 57.895 5.12 0.00 33.95 1.40
1609 5813 3.619038 CGTTTTATGAGAGGCTCTTCACC 59.381 47.826 19.80 6.22 0.00 4.02
1618 5822 0.898320 GGCTCTTCACCAGTAGCTCA 59.102 55.000 0.00 0.00 35.30 4.26
1693 5901 0.596083 GACACTGCTCGATGGATCCG 60.596 60.000 7.39 0.00 0.00 4.18
1694 5902 1.953138 CACTGCTCGATGGATCCGC 60.953 63.158 7.39 4.33 0.00 5.54
1715 5923 5.007626 CCGCTGCATTAACTTGCTAATTCTA 59.992 40.000 0.00 0.00 43.18 2.10
1719 5927 9.604626 GCTGCATTAACTTGCTAATTCTATAAG 57.395 33.333 2.92 0.00 43.18 1.73
1756 5964 3.259374 TCACAGGCTCCTGAAGTTCTAAG 59.741 47.826 21.75 0.42 46.30 2.18
1795 6003 4.818546 GGCTTACTACATTGATGAGCATGT 59.181 41.667 0.00 0.00 0.00 3.21
1834 6042 3.392616 CCTATGGTCCTTGAGGCTTATGT 59.607 47.826 0.00 0.00 34.44 2.29
1838 6046 3.197766 TGGTCCTTGAGGCTTATGTACAG 59.802 47.826 0.33 0.00 34.44 2.74
1858 6066 4.141482 ACAGCAGTTTAGGAAGGACTTCAA 60.141 41.667 13.51 0.00 41.20 2.69
1871 6079 4.803452 AGGACTTCAAACATTTCCTGGAA 58.197 39.130 4.68 4.68 35.28 3.53
1925 6133 6.364701 CCAGATGGTTGTTTCCATTATAGGA 58.635 40.000 0.00 0.00 46.72 2.94
2007 6221 3.392616 CCTTATGGCCTCAGAGGTACAAT 59.607 47.826 18.37 8.99 37.80 2.71
2120 6346 4.756084 AGGCGAAGTTTGATTCTTTCTG 57.244 40.909 0.00 0.00 0.00 3.02
2186 6412 6.077322 TCATCCAAGAAGATGGTTCCTTTTT 58.923 36.000 1.96 0.00 43.25 1.94
2211 6437 3.087031 CAAGGAGTTTCTGGTGCATGAT 58.913 45.455 0.00 0.00 0.00 2.45
2273 6499 2.103263 GGATCGCCAACCAGATAAGAGT 59.897 50.000 0.00 0.00 0.00 3.24
2274 6500 3.321111 GGATCGCCAACCAGATAAGAGTA 59.679 47.826 0.00 0.00 0.00 2.59
2435 6661 1.961394 CAAGGCCTGATGGATTGATGG 59.039 52.381 5.69 0.00 35.10 3.51
2438 6664 1.144503 GGCCTGATGGATTGATGGTCT 59.855 52.381 0.00 0.00 34.57 3.85
2469 6695 3.510719 GTGTGACTGCTTTGCTTTTTCA 58.489 40.909 0.00 0.00 0.00 2.69
2506 6735 1.338105 TGAATGAGACTGAGCCGTTGG 60.338 52.381 0.00 0.00 0.00 3.77
2522 6751 2.459934 GTTGGTTTCTTCAAGGCAACG 58.540 47.619 0.00 0.00 46.39 4.10
2548 6777 5.885352 TGTCAACAGTTTCCTTTGATCTTGA 59.115 36.000 0.00 0.00 32.10 3.02
2573 6802 1.136329 AGGATGGTGAGTTGGTGGCT 61.136 55.000 0.00 0.00 0.00 4.75
2579 6822 0.385390 GTGAGTTGGTGGCTGGTTTG 59.615 55.000 0.00 0.00 0.00 2.93
2598 6841 1.336440 TGGAAGGCAACAACATGTTCG 59.664 47.619 8.48 7.26 38.77 3.95
2612 6855 6.072508 ACAACATGTTCGCACTTCATTAATCT 60.073 34.615 8.48 0.00 0.00 2.40
2617 6860 8.950961 CATGTTCGCACTTCATTAATCTATTTG 58.049 33.333 0.00 0.00 0.00 2.32
2653 6905 4.025647 GGCTTTCTTGCGTCATACTATGTC 60.026 45.833 0.00 0.00 0.00 3.06
2666 6918 7.306457 CGTCATACTATGTCATTGCTTCTCTTG 60.306 40.741 0.00 0.00 0.00 3.02
2768 7022 4.034626 CGTTTGTCCAAGTACATGTTCACA 59.965 41.667 2.30 0.00 0.00 3.58
2772 7026 4.072131 GTCCAAGTACATGTTCACACCAT 58.928 43.478 2.30 0.00 0.00 3.55
2800 7054 7.229506 ACCATATTCTAGCTTTCAGTTATTGCC 59.770 37.037 0.00 0.00 0.00 4.52
2859 7120 4.220382 CACATTTGACCTTAATTCAGGCCA 59.780 41.667 5.01 0.00 37.47 5.36
2866 7127 3.274288 CCTTAATTCAGGCCAGTGACTC 58.726 50.000 5.01 0.00 0.00 3.36
2952 9576 0.819259 GTGCAGCTTCCTGTGTCCAA 60.819 55.000 0.00 0.00 41.26 3.53
2956 9580 1.808945 CAGCTTCCTGTGTCCAATGTC 59.191 52.381 0.00 0.00 34.31 3.06
2964 9588 1.317613 GTGTCCAATGTCAGTGGCAA 58.682 50.000 14.60 2.18 35.99 4.52
2967 9591 2.964464 TGTCCAATGTCAGTGGCAATTT 59.036 40.909 14.60 0.00 35.99 1.82
2968 9592 3.243805 TGTCCAATGTCAGTGGCAATTTG 60.244 43.478 14.60 2.47 35.99 2.32
2979 9603 2.554032 GTGGCAATTTGAGCACTGTAGT 59.446 45.455 0.00 0.00 0.00 2.73
2983 9607 4.082571 GGCAATTTGAGCACTGTAGTTCAT 60.083 41.667 0.00 0.00 0.00 2.57
2989 9613 9.683069 AATTTGAGCACTGTAGTTCATTAAAAG 57.317 29.630 0.00 0.00 0.00 2.27
2996 9620 8.289618 GCACTGTAGTTCATTAAAAGAATGTGA 58.710 33.333 0.00 0.00 0.00 3.58
3027 9651 7.633018 TTACAGAGATAGGATATGCCCTTTT 57.367 36.000 0.00 0.00 37.74 2.27
3034 9658 8.454859 AGATAGGATATGCCCTTTTCTTCATA 57.545 34.615 0.00 0.00 37.74 2.15
3068 9692 8.902540 TTGTAAGCATGAAGAAACTTCTTAGA 57.097 30.769 4.71 0.00 46.84 2.10
3072 9696 8.499403 AAGCATGAAGAAACTTCTTAGATACC 57.501 34.615 4.71 0.00 46.84 2.73
3073 9697 7.624549 AGCATGAAGAAACTTCTTAGATACCA 58.375 34.615 4.71 0.00 46.84 3.25
3076 9904 9.388506 CATGAAGAAACTTCTTAGATACCATGT 57.611 33.333 14.88 0.00 46.84 3.21
3079 9907 8.567285 AAGAAACTTCTTAGATACCATGTTGG 57.433 34.615 2.83 0.00 45.17 3.77
3103 9931 6.280643 GTCTAAAATGTTTTCCCTGTTTGCT 58.719 36.000 0.00 0.00 0.00 3.91
3148 10001 3.876274 TCTGCTATTGACAGACAGGTC 57.124 47.619 0.00 0.00 39.21 3.85
3163 10016 8.284945 ACAGACAGGTCGTTAGTATTGTATTA 57.715 34.615 0.00 0.00 34.09 0.98
3192 10045 2.727123 TTTGACCAGCCTTTCAGTGA 57.273 45.000 0.00 0.00 0.00 3.41
3193 10046 1.967319 TTGACCAGCCTTTCAGTGAC 58.033 50.000 0.00 0.00 0.00 3.67
3194 10047 0.836606 TGACCAGCCTTTCAGTGACA 59.163 50.000 0.00 0.00 0.00 3.58
3195 10048 1.202687 TGACCAGCCTTTCAGTGACAG 60.203 52.381 0.00 0.00 0.00 3.51
3196 10049 1.070758 GACCAGCCTTTCAGTGACAGA 59.929 52.381 7.90 0.00 0.00 3.41
3197 10050 1.202698 ACCAGCCTTTCAGTGACAGAC 60.203 52.381 7.90 0.00 0.00 3.51
3198 10051 1.202687 CCAGCCTTTCAGTGACAGACA 60.203 52.381 7.90 0.00 0.00 3.41
3199 10052 2.141517 CAGCCTTTCAGTGACAGACAG 58.858 52.381 7.90 0.00 0.00 3.51
3200 10053 1.071385 AGCCTTTCAGTGACAGACAGG 59.929 52.381 7.90 5.88 36.31 4.00
3201 10054 1.202698 GCCTTTCAGTGACAGACAGGT 60.203 52.381 11.14 0.00 35.78 4.00
3202 10055 2.760374 CCTTTCAGTGACAGACAGGTC 58.240 52.381 7.90 0.00 38.29 3.85
3203 10056 2.398498 CTTTCAGTGACAGACAGGTCG 58.602 52.381 0.00 0.00 40.72 4.79
3204 10057 0.032130 TTCAGTGACAGACAGGTCGC 59.968 55.000 0.00 0.00 46.12 5.19
3211 10064 0.034380 ACAGACAGGTCGCTAGGCTA 60.034 55.000 0.00 0.00 34.09 3.93
3212 10065 1.323412 CAGACAGGTCGCTAGGCTAT 58.677 55.000 0.00 0.00 34.09 2.97
3215 10068 0.106167 ACAGGTCGCTAGGCTATCCA 60.106 55.000 0.00 0.00 33.74 3.41
3285 10138 3.393472 GCCACAGGCCTAGATTCTG 57.607 57.895 3.98 0.00 44.06 3.02
3286 10139 0.833287 GCCACAGGCCTAGATTCTGA 59.167 55.000 3.98 0.00 44.06 3.27
3287 10140 1.210478 GCCACAGGCCTAGATTCTGAA 59.790 52.381 3.98 0.00 44.06 3.02
3288 10141 2.744494 GCCACAGGCCTAGATTCTGAAG 60.744 54.545 3.98 0.00 44.06 3.02
3289 10142 2.768527 CCACAGGCCTAGATTCTGAAGA 59.231 50.000 3.98 0.00 33.19 2.87
3290 10143 3.390639 CCACAGGCCTAGATTCTGAAGAT 59.609 47.826 3.98 0.00 33.19 2.40
3291 10144 4.141528 CCACAGGCCTAGATTCTGAAGATT 60.142 45.833 3.98 0.00 33.19 2.40
3292 10145 5.435291 CACAGGCCTAGATTCTGAAGATTT 58.565 41.667 3.98 0.00 33.19 2.17
3293 10146 6.408548 CCACAGGCCTAGATTCTGAAGATTTA 60.409 42.308 3.98 0.00 33.19 1.40
3294 10147 7.050377 CACAGGCCTAGATTCTGAAGATTTAA 58.950 38.462 3.98 0.00 33.19 1.52
3295 10148 7.226325 CACAGGCCTAGATTCTGAAGATTTAAG 59.774 40.741 3.98 0.00 33.19 1.85
3296 10149 7.126421 ACAGGCCTAGATTCTGAAGATTTAAGA 59.874 37.037 3.98 0.00 33.19 2.10
3297 10150 8.156165 CAGGCCTAGATTCTGAAGATTTAAGAT 58.844 37.037 3.98 0.00 0.00 2.40
3298 10151 8.374743 AGGCCTAGATTCTGAAGATTTAAGATC 58.625 37.037 1.29 0.00 0.00 2.75
3299 10152 8.374743 GGCCTAGATTCTGAAGATTTAAGATCT 58.625 37.037 0.00 0.00 0.00 2.75
3300 10153 9.206870 GCCTAGATTCTGAAGATTTAAGATCTG 57.793 37.037 0.00 0.00 0.00 2.90
3306 10159 8.783833 TTCTGAAGATTTAAGATCTGAAGTGG 57.216 34.615 0.00 0.00 0.00 4.00
3307 10160 8.138928 TCTGAAGATTTAAGATCTGAAGTGGA 57.861 34.615 0.00 0.00 0.00 4.02
3308 10161 8.256605 TCTGAAGATTTAAGATCTGAAGTGGAG 58.743 37.037 0.00 0.00 0.00 3.86
3309 10162 6.820656 TGAAGATTTAAGATCTGAAGTGGAGC 59.179 38.462 0.00 0.00 0.00 4.70
3310 10163 6.305272 AGATTTAAGATCTGAAGTGGAGCA 57.695 37.500 0.00 0.00 0.00 4.26
3311 10164 6.347696 AGATTTAAGATCTGAAGTGGAGCAG 58.652 40.000 0.00 0.00 0.00 4.24
3312 10165 5.745312 TTTAAGATCTGAAGTGGAGCAGA 57.255 39.130 0.00 0.00 44.43 4.26
3319 10172 5.745312 TCTGAAGTGGAGCAGATTTAAGA 57.255 39.130 0.00 0.00 36.31 2.10
3320 10173 6.305272 TCTGAAGTGGAGCAGATTTAAGAT 57.695 37.500 0.00 0.00 36.31 2.40
3321 10174 6.344500 TCTGAAGTGGAGCAGATTTAAGATC 58.656 40.000 0.00 0.00 36.31 2.75
3322 10175 6.155910 TCTGAAGTGGAGCAGATTTAAGATCT 59.844 38.462 0.00 0.00 36.31 2.75
3323 10176 6.111382 TGAAGTGGAGCAGATTTAAGATCTG 58.889 40.000 16.78 16.78 46.12 2.90
3324 10177 5.033589 AGTGGAGCAGATTTAAGATCTGG 57.966 43.478 19.96 9.27 44.17 3.86
3325 10178 4.718774 AGTGGAGCAGATTTAAGATCTGGA 59.281 41.667 19.96 0.00 44.17 3.86
3326 10179 5.055812 GTGGAGCAGATTTAAGATCTGGAG 58.944 45.833 19.96 5.25 44.17 3.86
3327 10180 4.718774 TGGAGCAGATTTAAGATCTGGAGT 59.281 41.667 19.96 0.00 44.17 3.85
3328 10181 5.190528 TGGAGCAGATTTAAGATCTGGAGTT 59.809 40.000 19.96 0.00 44.17 3.01
3329 10182 6.118852 GGAGCAGATTTAAGATCTGGAGTTT 58.881 40.000 19.96 0.00 44.17 2.66
3330 10183 7.092891 TGGAGCAGATTTAAGATCTGGAGTTTA 60.093 37.037 19.96 0.00 44.17 2.01
3331 10184 7.440856 GGAGCAGATTTAAGATCTGGAGTTTAG 59.559 40.741 19.96 0.00 44.17 1.85
3332 10185 6.765512 AGCAGATTTAAGATCTGGAGTTTAGC 59.234 38.462 19.96 0.00 44.17 3.09
3333 10186 6.017523 GCAGATTTAAGATCTGGAGTTTAGCC 60.018 42.308 19.96 0.00 44.17 3.93
3334 10187 7.278875 CAGATTTAAGATCTGGAGTTTAGCCT 58.721 38.462 14.74 0.00 41.24 4.58
3335 10188 8.424918 CAGATTTAAGATCTGGAGTTTAGCCTA 58.575 37.037 14.74 0.00 41.24 3.93
3336 10189 8.646900 AGATTTAAGATCTGGAGTTTAGCCTAG 58.353 37.037 0.00 0.00 0.00 3.02
3337 10190 4.681074 AAGATCTGGAGTTTAGCCTAGC 57.319 45.455 0.00 0.00 0.00 3.42
3338 10191 3.922375 AGATCTGGAGTTTAGCCTAGCT 58.078 45.455 0.00 0.00 43.41 3.32
3339 10192 4.294347 AGATCTGGAGTTTAGCCTAGCTT 58.706 43.478 0.00 0.00 40.44 3.74
3340 10193 3.895232 TCTGGAGTTTAGCCTAGCTTG 57.105 47.619 0.00 0.00 40.44 4.01
3341 10194 2.093447 TCTGGAGTTTAGCCTAGCTTGC 60.093 50.000 0.00 0.00 40.44 4.01
3342 10195 1.909302 TGGAGTTTAGCCTAGCTTGCT 59.091 47.619 14.05 14.05 40.44 3.91
3343 10196 2.093447 TGGAGTTTAGCCTAGCTTGCTC 60.093 50.000 13.11 2.30 40.44 4.26
3344 10197 2.556257 GAGTTTAGCCTAGCTTGCTCC 58.444 52.381 13.11 4.45 40.44 4.70
3345 10198 1.909302 AGTTTAGCCTAGCTTGCTCCA 59.091 47.619 13.11 0.60 40.44 3.86
3346 10199 2.305927 AGTTTAGCCTAGCTTGCTCCAA 59.694 45.455 13.11 6.16 40.44 3.53
3347 10200 2.680339 GTTTAGCCTAGCTTGCTCCAAG 59.320 50.000 13.11 0.74 43.57 3.61
3357 10210 4.904466 GCTCCAAGCAAAGCCATG 57.096 55.556 0.00 0.00 41.89 3.66
3358 10211 1.217244 GCTCCAAGCAAAGCCATGG 59.783 57.895 7.63 7.63 41.89 3.66
3359 10212 1.217244 CTCCAAGCAAAGCCATGGC 59.783 57.895 30.12 30.12 36.42 4.40
3360 10213 2.234913 CTCCAAGCAAAGCCATGGCC 62.235 60.000 33.14 17.70 43.17 5.36
3361 10214 2.288025 CCAAGCAAAGCCATGGCCT 61.288 57.895 33.14 19.03 43.17 5.19
3362 10215 1.217244 CAAGCAAAGCCATGGCCTC 59.783 57.895 33.14 18.61 43.17 4.70
3363 10216 1.986210 AAGCAAAGCCATGGCCTCC 60.986 57.895 33.14 18.37 43.17 4.30
3364 10217 2.681064 GCAAAGCCATGGCCTCCA 60.681 61.111 33.14 0.00 43.17 3.86
3365 10218 2.285024 GCAAAGCCATGGCCTCCAA 61.285 57.895 33.14 0.00 43.17 3.53
3366 10219 1.829523 GCAAAGCCATGGCCTCCAAA 61.830 55.000 33.14 0.00 43.17 3.28
3367 10220 0.037046 CAAAGCCATGGCCTCCAAAC 60.037 55.000 33.14 3.07 43.17 2.93
3368 10221 0.471591 AAAGCCATGGCCTCCAAACA 60.472 50.000 33.14 0.00 43.17 2.83
3369 10222 0.901580 AAGCCATGGCCTCCAAACAG 60.902 55.000 33.14 0.00 43.17 3.16
3370 10223 1.304381 GCCATGGCCTCCAAACAGA 60.304 57.895 27.24 0.00 36.95 3.41
3371 10224 1.598701 GCCATGGCCTCCAAACAGAC 61.599 60.000 27.24 0.00 36.95 3.51
3372 10225 1.308069 CCATGGCCTCCAAACAGACG 61.308 60.000 3.32 0.00 36.95 4.18
3373 10226 1.675641 ATGGCCTCCAAACAGACGC 60.676 57.895 3.32 0.00 36.95 5.19
3374 10227 2.032681 GGCCTCCAAACAGACGCT 59.967 61.111 0.00 0.00 0.00 5.07
3375 10228 2.328099 GGCCTCCAAACAGACGCTG 61.328 63.158 0.00 5.47 37.52 5.18
3376 10229 2.970974 GCCTCCAAACAGACGCTGC 61.971 63.158 6.74 0.00 34.37 5.25
3377 10230 1.597854 CCTCCAAACAGACGCTGCA 60.598 57.895 0.00 0.00 34.37 4.41
3378 10231 0.957395 CCTCCAAACAGACGCTGCAT 60.957 55.000 0.00 0.00 34.37 3.96
3379 10232 1.675714 CCTCCAAACAGACGCTGCATA 60.676 52.381 0.00 0.00 34.37 3.14
3380 10233 2.283298 CTCCAAACAGACGCTGCATAT 58.717 47.619 0.00 0.00 34.37 1.78
3381 10234 2.009051 TCCAAACAGACGCTGCATATG 58.991 47.619 0.00 0.00 34.37 1.78
3382 10235 2.009051 CCAAACAGACGCTGCATATGA 58.991 47.619 6.97 0.00 34.37 2.15
3383 10236 2.419673 CCAAACAGACGCTGCATATGAA 59.580 45.455 6.97 0.00 34.37 2.57
3384 10237 3.065786 CCAAACAGACGCTGCATATGAAT 59.934 43.478 6.97 0.00 34.37 2.57
3385 10238 4.277258 CAAACAGACGCTGCATATGAATC 58.723 43.478 6.97 0.00 34.37 2.52
3386 10239 3.183793 ACAGACGCTGCATATGAATCA 57.816 42.857 6.97 0.00 34.37 2.57
3387 10240 3.534554 ACAGACGCTGCATATGAATCAA 58.465 40.909 6.97 0.00 34.37 2.57
3388 10241 3.558829 ACAGACGCTGCATATGAATCAAG 59.441 43.478 6.97 0.00 34.37 3.02
3389 10242 3.059120 CAGACGCTGCATATGAATCAAGG 60.059 47.826 6.97 0.00 0.00 3.61
3390 10243 3.133691 GACGCTGCATATGAATCAAGGA 58.866 45.455 6.97 0.00 0.00 3.36
3391 10244 2.874701 ACGCTGCATATGAATCAAGGAC 59.125 45.455 6.97 0.00 0.00 3.85
3392 10245 2.874086 CGCTGCATATGAATCAAGGACA 59.126 45.455 6.97 0.00 0.00 4.02
3393 10246 3.313249 CGCTGCATATGAATCAAGGACAA 59.687 43.478 6.97 0.00 0.00 3.18
3394 10247 4.554134 CGCTGCATATGAATCAAGGACAAG 60.554 45.833 6.97 0.00 0.00 3.16
3395 10248 4.261489 GCTGCATATGAATCAAGGACAAGG 60.261 45.833 6.97 0.00 0.00 3.61
3396 10249 4.209538 TGCATATGAATCAAGGACAAGGG 58.790 43.478 6.97 0.00 0.00 3.95
3397 10250 3.571401 GCATATGAATCAAGGACAAGGGG 59.429 47.826 6.97 0.00 0.00 4.79
3398 10251 4.689705 GCATATGAATCAAGGACAAGGGGA 60.690 45.833 6.97 0.00 0.00 4.81
3399 10252 5.448654 CATATGAATCAAGGACAAGGGGAA 58.551 41.667 0.00 0.00 0.00 3.97
3400 10253 3.893753 TGAATCAAGGACAAGGGGAAA 57.106 42.857 0.00 0.00 0.00 3.13
3401 10254 3.496331 TGAATCAAGGACAAGGGGAAAC 58.504 45.455 0.00 0.00 0.00 2.78
3402 10255 3.117322 TGAATCAAGGACAAGGGGAAACA 60.117 43.478 0.00 0.00 0.00 2.83
3403 10256 3.611025 ATCAAGGACAAGGGGAAACAA 57.389 42.857 0.00 0.00 0.00 2.83
3404 10257 2.944129 TCAAGGACAAGGGGAAACAAG 58.056 47.619 0.00 0.00 0.00 3.16
3405 10258 1.341209 CAAGGACAAGGGGAAACAAGC 59.659 52.381 0.00 0.00 0.00 4.01
3406 10259 0.853530 AGGACAAGGGGAAACAAGCT 59.146 50.000 0.00 0.00 0.00 3.74
3407 10260 2.062636 AGGACAAGGGGAAACAAGCTA 58.937 47.619 0.00 0.00 0.00 3.32
3408 10261 2.649816 AGGACAAGGGGAAACAAGCTAT 59.350 45.455 0.00 0.00 0.00 2.97
3409 10262 2.755103 GGACAAGGGGAAACAAGCTATG 59.245 50.000 0.00 0.00 0.00 2.23
3410 10263 2.164422 GACAAGGGGAAACAAGCTATGC 59.836 50.000 0.00 0.00 0.00 3.14
3411 10264 2.225117 ACAAGGGGAAACAAGCTATGCT 60.225 45.455 0.00 0.00 42.56 3.79
3412 10265 2.424956 CAAGGGGAAACAAGCTATGCTC 59.575 50.000 0.00 0.00 38.25 4.26
3413 10266 1.017387 GGGGAAACAAGCTATGCTCG 58.983 55.000 0.00 0.00 38.25 5.03
3414 10267 0.378610 GGGAAACAAGCTATGCTCGC 59.621 55.000 0.00 0.00 38.25 5.03
3415 10268 1.086696 GGAAACAAGCTATGCTCGCA 58.913 50.000 0.00 0.00 38.25 5.10
3416 10269 1.468520 GGAAACAAGCTATGCTCGCAA 59.531 47.619 0.00 0.00 38.25 4.85
3417 10270 2.509870 GAAACAAGCTATGCTCGCAAC 58.490 47.619 0.00 0.00 38.25 4.17
3418 10271 1.813513 AACAAGCTATGCTCGCAACT 58.186 45.000 0.00 0.00 38.25 3.16
3419 10272 1.363744 ACAAGCTATGCTCGCAACTC 58.636 50.000 0.00 0.00 38.25 3.01
3420 10273 0.654683 CAAGCTATGCTCGCAACTCC 59.345 55.000 0.00 0.00 38.25 3.85
3421 10274 0.250234 AAGCTATGCTCGCAACTCCA 59.750 50.000 0.00 0.00 38.25 3.86
3422 10275 0.179089 AGCTATGCTCGCAACTCCAG 60.179 55.000 0.00 0.00 30.62 3.86
3423 10276 0.460987 GCTATGCTCGCAACTCCAGT 60.461 55.000 0.00 0.00 0.00 4.00
3424 10277 1.284657 CTATGCTCGCAACTCCAGTG 58.715 55.000 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.261489 CCATGAGCTTGTTGGATAATGAGC 60.261 45.833 0.00 0.00 31.94 4.26
3 4 4.858850 ACCATGAGCTTGTTGGATAATGA 58.141 39.130 15.15 0.00 34.52 2.57
4 5 5.359009 AGAACCATGAGCTTGTTGGATAATG 59.641 40.000 15.15 0.00 34.52 1.90
5 6 5.513233 AGAACCATGAGCTTGTTGGATAAT 58.487 37.500 15.15 1.81 34.52 1.28
6 7 4.922206 AGAACCATGAGCTTGTTGGATAA 58.078 39.130 15.15 0.00 34.52 1.75
10 11 1.466167 CGAGAACCATGAGCTTGTTGG 59.534 52.381 8.51 8.51 36.56 3.77
11 12 2.096069 CACGAGAACCATGAGCTTGTTG 60.096 50.000 0.00 0.00 0.00 3.33
12 13 2.146342 CACGAGAACCATGAGCTTGTT 58.854 47.619 0.00 0.00 0.00 2.83
13 14 1.070758 ACACGAGAACCATGAGCTTGT 59.929 47.619 0.00 0.00 0.00 3.16
14 15 1.800805 ACACGAGAACCATGAGCTTG 58.199 50.000 0.00 0.00 0.00 4.01
15 16 2.146342 CAACACGAGAACCATGAGCTT 58.854 47.619 0.00 0.00 0.00 3.74
27 28 5.163550 TGACCAGGAGTATAATCAACACGAG 60.164 44.000 2.18 0.00 0.00 4.18
33 34 6.867519 TGTTCTGACCAGGAGTATAATCAA 57.132 37.500 2.18 0.00 0.00 2.57
38 39 6.440647 ACTCAAATGTTCTGACCAGGAGTATA 59.559 38.462 0.00 0.00 31.86 1.47
128 129 6.151817 CGATGTAGAAGGATGATCTGACCATA 59.848 42.308 0.00 0.00 0.00 2.74
132 133 5.697473 TCGATGTAGAAGGATGATCTGAC 57.303 43.478 0.00 0.00 0.00 3.51
153 154 0.250338 AGGCACGGTCCAAAGTCTTC 60.250 55.000 0.00 0.00 0.00 2.87
204 205 2.011046 GCCAGAGATGAAGAGTGGTGC 61.011 57.143 0.00 0.00 0.00 5.01
217 218 4.831674 TGAATCAATCAAGAGCCAGAGA 57.168 40.909 0.00 0.00 34.30 3.10
224 225 8.850007 ATGAGGTGATATGAATCAATCAAGAG 57.150 34.615 8.79 0.00 43.69 2.85
333 335 3.256136 TCGTTTTCGGCCATTATTTGGTT 59.744 39.130 2.24 0.00 44.12 3.67
335 337 3.495670 TCGTTTTCGGCCATTATTTGG 57.504 42.857 2.24 0.00 44.65 3.28
338 340 4.776795 ACTTTCGTTTTCGGCCATTATT 57.223 36.364 2.24 0.00 44.25 1.40
353 355 9.158233 TGGTTGGAATTAACTATAGAACTTTCG 57.842 33.333 6.78 0.00 0.00 3.46
359 361 6.826741 GGCACTGGTTGGAATTAACTATAGAA 59.173 38.462 6.78 0.00 0.00 2.10
360 362 6.069905 TGGCACTGGTTGGAATTAACTATAGA 60.070 38.462 6.78 0.00 0.00 1.98
401 416 9.261180 TCAATGCTATGTATAAGTCTTAAGTGC 57.739 33.333 1.63 0.00 0.00 4.40
414 429 3.117926 TGCAGGTGGTCAATGCTATGTAT 60.118 43.478 9.71 0.00 40.62 2.29
416 431 1.004628 TGCAGGTGGTCAATGCTATGT 59.995 47.619 9.71 0.00 40.62 2.29
421 436 1.252904 ATGGTGCAGGTGGTCAATGC 61.253 55.000 0.00 3.37 40.40 3.56
435 450 5.361285 TCAAATAATAACCGGGGAAATGGTG 59.639 40.000 6.32 0.00 38.82 4.17
442 457 6.059484 GTGATCTTCAAATAATAACCGGGGA 58.941 40.000 6.32 0.00 0.00 4.81
444 459 6.935741 TGTGATCTTCAAATAATAACCGGG 57.064 37.500 6.32 0.00 0.00 5.73
446 461 7.930217 ACCATGTGATCTTCAAATAATAACCG 58.070 34.615 0.00 0.00 0.00 4.44
692 757 8.268738 GCAAACATTTCAGACATTTTAGAACAC 58.731 33.333 0.00 0.00 0.00 3.32
726 791 4.651503 TGGCTCTTCCATGTTGGTTTAAAA 59.348 37.500 0.00 0.00 40.72 1.52
729 794 3.517296 TGGCTCTTCCATGTTGGTTTA 57.483 42.857 0.00 0.00 40.72 2.01
732 797 1.145738 AGTTGGCTCTTCCATGTTGGT 59.854 47.619 0.00 0.00 46.04 3.67
735 800 2.957402 TGAGTTGGCTCTTCCATGTT 57.043 45.000 0.00 0.00 46.04 2.71
737 802 3.087031 ACATTGAGTTGGCTCTTCCATG 58.913 45.455 0.00 0.00 46.04 3.66
738 803 3.446442 ACATTGAGTTGGCTCTTCCAT 57.554 42.857 0.00 0.00 46.04 3.41
740 805 3.440522 GGTTACATTGAGTTGGCTCTTCC 59.559 47.826 0.00 0.00 42.13 3.46
744 809 6.699575 AATATGGTTACATTGAGTTGGCTC 57.300 37.500 0.00 0.00 39.04 4.70
785 850 9.436957 AGTCAATAGTAGTGGTTGTTTTAGATG 57.563 33.333 0.00 0.00 0.00 2.90
871 946 7.718753 CCATCTTAAGCCAGACAATAGAAAGAT 59.281 37.037 0.00 0.00 32.81 2.40
877 952 5.041191 ACCCATCTTAAGCCAGACAATAG 57.959 43.478 0.00 0.00 0.00 1.73
898 983 0.475906 ATCTGGGGATGGCTGCTTAC 59.524 55.000 0.00 0.00 0.00 2.34
916 1001 9.075678 CCTCAATTCTTATTTTCCATCTGCTAT 57.924 33.333 0.00 0.00 0.00 2.97
924 1009 6.256053 AGGAAGCCTCAATTCTTATTTTCCA 58.744 36.000 0.00 0.00 32.01 3.53
930 1015 7.147230 ACCAGATTAGGAAGCCTCAATTCTTAT 60.147 37.037 0.00 0.00 34.61 1.73
931 1016 6.158695 ACCAGATTAGGAAGCCTCAATTCTTA 59.841 38.462 0.00 0.00 34.61 2.10
933 1018 4.476479 ACCAGATTAGGAAGCCTCAATTCT 59.524 41.667 0.00 0.00 34.61 2.40
934 1019 4.786425 ACCAGATTAGGAAGCCTCAATTC 58.214 43.478 0.00 0.00 34.61 2.17
936 1021 4.476479 AGAACCAGATTAGGAAGCCTCAAT 59.524 41.667 0.00 0.00 34.61 2.57
938 1023 3.454858 AGAACCAGATTAGGAAGCCTCA 58.545 45.455 0.00 0.00 34.61 3.86
986 1093 1.077005 AGGCCATGGCTTTGGTTAGAA 59.923 47.619 34.70 0.00 41.60 2.10
1079 1187 6.094048 TGAGAAGCCAAGTGTCAAATAATAGC 59.906 38.462 0.00 0.00 0.00 2.97
1085 1193 5.127682 AGTTTTGAGAAGCCAAGTGTCAAAT 59.872 36.000 0.00 0.00 37.08 2.32
1144 1269 4.497473 TTATCAACTCCCGCAAAAACAG 57.503 40.909 0.00 0.00 0.00 3.16
1146 1271 8.403236 AGTTATATTATCAACTCCCGCAAAAAC 58.597 33.333 0.00 0.00 28.88 2.43
1147 1272 8.514330 AGTTATATTATCAACTCCCGCAAAAA 57.486 30.769 0.00 0.00 28.88 1.94
1178 1497 7.862372 TCCTCATTTCTTCTTTTGAATTTCACG 59.138 33.333 0.00 0.00 37.85 4.35
1179 1498 9.533253 TTCCTCATTTCTTCTTTTGAATTTCAC 57.467 29.630 0.00 0.00 37.85 3.18
1356 1683 0.374758 CAAGTCCGCGATCACCATTG 59.625 55.000 8.23 0.00 0.00 2.82
1357 1684 0.744414 CCAAGTCCGCGATCACCATT 60.744 55.000 8.23 0.00 0.00 3.16
1419 1746 1.143838 CCATGGATCGCCTCGACAA 59.856 57.895 5.56 0.00 39.18 3.18
1471 5672 0.370273 CGTTGAGGAACACGCATAGC 59.630 55.000 0.00 0.00 31.78 2.97
1474 5675 0.033504 AGTCGTTGAGGAACACGCAT 59.966 50.000 0.00 0.00 31.78 4.73
1477 5678 0.232303 GCAAGTCGTTGAGGAACACG 59.768 55.000 0.00 0.00 35.46 4.49
1493 5694 1.134521 AGTGAAGTCGTTGTCAGGCAA 60.135 47.619 0.00 0.00 34.16 4.52
1512 5713 2.037772 ACAAGGCTCTTCACCACTGTAG 59.962 50.000 0.00 0.00 0.00 2.74
1513 5714 2.037251 GACAAGGCTCTTCACCACTGTA 59.963 50.000 0.00 0.00 0.00 2.74
1516 5717 1.131638 TGACAAGGCTCTTCACCACT 58.868 50.000 0.00 0.00 0.00 4.00
1594 5798 2.451490 CTACTGGTGAAGAGCCTCTCA 58.549 52.381 0.00 0.00 32.06 3.27
1609 5813 2.671888 CACAAGATGCACTGAGCTACTG 59.328 50.000 0.00 0.00 45.94 2.74
1618 5822 0.250038 ACGAGCACACAAGATGCACT 60.250 50.000 0.00 0.00 45.92 4.40
1715 5923 8.465201 GCCTGTGAAGATCAAGATTTTTCTTAT 58.535 33.333 0.00 0.00 0.00 1.73
1719 5927 6.264841 AGCCTGTGAAGATCAAGATTTTTC 57.735 37.500 0.00 0.00 0.00 2.29
1725 5933 2.235650 CAGGAGCCTGTGAAGATCAAGA 59.764 50.000 8.38 0.00 39.10 3.02
1756 5964 3.108288 GCCGGGATCTGGTTCCTCC 62.108 68.421 2.18 0.00 35.97 4.30
1795 6003 0.690762 AGGGAGCTTTTCACGCCTAA 59.309 50.000 0.00 0.00 33.09 2.69
1834 6042 4.591498 TGAAGTCCTTCCTAAACTGCTGTA 59.409 41.667 4.67 0.00 38.77 2.74
1838 6046 4.578928 TGTTTGAAGTCCTTCCTAAACTGC 59.421 41.667 17.04 0.00 36.87 4.40
1858 6066 3.416156 GCTCTCAGTTCCAGGAAATGTT 58.584 45.455 25.34 0.80 38.52 2.71
1871 6079 4.323868 GGGACTAATTCTTTGGCTCTCAGT 60.324 45.833 0.00 0.00 0.00 3.41
1925 6133 1.315690 CGATGCCATCAGAATGCCTT 58.684 50.000 5.40 0.00 34.76 4.35
2120 6346 1.521681 GGTCCATAGACTGGCACGC 60.522 63.158 0.00 0.00 45.52 5.34
2186 6412 2.106338 TGCACCAGAAACTCCTTGATGA 59.894 45.455 0.00 0.00 0.00 2.92
2226 6452 1.364171 GGTGACGAGTGCACTGTCT 59.636 57.895 31.25 15.64 36.53 3.41
2273 6499 4.201753 GCACGACTATCTGTTCGTACACTA 60.202 45.833 0.00 0.00 37.03 2.74
2274 6500 3.425892 GCACGACTATCTGTTCGTACACT 60.426 47.826 0.00 0.00 37.03 3.55
2374 6600 0.947244 GCTAATCCGGCATGGTCTTG 59.053 55.000 0.00 0.00 39.52 3.02
2379 6605 1.089920 GCATAGCTAATCCGGCATGG 58.910 55.000 0.00 0.00 40.09 3.66
2421 6647 2.621998 GCCAAGACCATCAATCCATCAG 59.378 50.000 0.00 0.00 0.00 2.90
2435 6661 2.978010 CACACCACCGGCCAAGAC 60.978 66.667 0.00 0.00 0.00 3.01
2438 6664 3.484806 AGTCACACCACCGGCCAA 61.485 61.111 0.00 0.00 0.00 4.52
2469 6695 4.279671 TCATTCAAATGTGGCGTACCTTTT 59.720 37.500 2.85 0.00 37.65 2.27
2506 6735 3.003275 TGACATCGTTGCCTTGAAGAAAC 59.997 43.478 0.00 0.00 0.00 2.78
2522 6751 6.566197 AGATCAAAGGAAACTGTTGACATC 57.434 37.500 0.00 0.00 42.68 3.06
2573 6802 1.561643 TGTTGTTGCCTTCCAAACCA 58.438 45.000 0.00 0.00 34.68 3.67
2579 6822 1.930371 GCGAACATGTTGTTGCCTTCC 60.930 52.381 17.58 0.00 41.28 3.46
2612 6855 4.183223 AGCCCACTCCAATATGCAAATA 57.817 40.909 0.00 0.00 0.00 1.40
2617 6860 2.659428 AGAAAGCCCACTCCAATATGC 58.341 47.619 0.00 0.00 0.00 3.14
2653 6905 7.988737 TCCATAAACATACAAGAGAAGCAATG 58.011 34.615 0.00 0.00 0.00 2.82
2768 7022 6.126652 ACTGAAAGCTAGAATATGGTCATGGT 60.127 38.462 0.00 0.00 37.60 3.55
2772 7026 9.330063 CAATAACTGAAAGCTAGAATATGGTCA 57.670 33.333 0.00 0.00 37.60 4.02
2866 7127 8.608844 AGGACAAAAGTTAAGAATACAGTGAG 57.391 34.615 0.00 0.00 0.00 3.51
2881 7142 7.665559 TGAACTAGCATGATTAAGGACAAAAGT 59.334 33.333 0.00 0.00 0.00 2.66
2882 7143 8.044060 TGAACTAGCATGATTAAGGACAAAAG 57.956 34.615 0.00 0.00 0.00 2.27
2941 9565 1.072173 CCACTGACATTGGACACAGGA 59.928 52.381 5.94 0.00 36.02 3.86
2952 9576 2.029649 GTGCTCAAATTGCCACTGACAT 60.030 45.455 8.59 0.00 0.00 3.06
2956 9580 1.338973 ACAGTGCTCAAATTGCCACTG 59.661 47.619 28.18 28.18 41.10 3.66
2964 9588 9.066892 TCTTTTAATGAACTACAGTGCTCAAAT 57.933 29.630 0.00 0.00 0.00 2.32
2967 9591 8.506437 CATTCTTTTAATGAACTACAGTGCTCA 58.494 33.333 0.00 0.00 0.00 4.26
2968 9592 8.507249 ACATTCTTTTAATGAACTACAGTGCTC 58.493 33.333 4.82 0.00 0.00 4.26
2999 9623 7.454225 AGGGCATATCCTATCTCTGTAAAAAC 58.546 38.462 0.00 0.00 34.92 2.43
3013 9637 6.183361 ACCATATGAAGAAAAGGGCATATCCT 60.183 38.462 3.65 0.00 39.17 3.24
3034 9658 9.423061 GTTTCTTCATGCTTACAAAATTACCAT 57.577 29.630 0.00 0.00 0.00 3.55
3050 9674 9.388506 ACATGGTATCTAAGAAGTTTCTTCATG 57.611 33.333 19.48 19.48 43.72 3.07
3071 9695 5.931724 GGGAAAACATTTTAGACCAACATGG 59.068 40.000 0.00 0.00 45.02 3.66
3072 9696 6.646240 CAGGGAAAACATTTTAGACCAACATG 59.354 38.462 0.00 0.00 0.00 3.21
3073 9697 6.326323 ACAGGGAAAACATTTTAGACCAACAT 59.674 34.615 0.00 0.00 0.00 2.71
3076 9904 6.800072 AACAGGGAAAACATTTTAGACCAA 57.200 33.333 0.00 0.00 0.00 3.67
3079 9907 6.280643 AGCAAACAGGGAAAACATTTTAGAC 58.719 36.000 0.00 0.00 0.00 2.59
3135 9963 5.010314 ACAATACTAACGACCTGTCTGTCAA 59.990 40.000 0.00 0.00 34.88 3.18
3138 9991 6.770746 ATACAATACTAACGACCTGTCTGT 57.229 37.500 0.00 0.00 0.00 3.41
3181 10034 1.202698 ACCTGTCTGTCACTGAAAGGC 60.203 52.381 18.76 0.00 39.50 4.35
3192 10045 0.034380 TAGCCTAGCGACCTGTCTGT 60.034 55.000 0.00 0.00 0.00 3.41
3193 10046 1.268352 GATAGCCTAGCGACCTGTCTG 59.732 57.143 0.00 0.00 0.00 3.51
3194 10047 1.611519 GATAGCCTAGCGACCTGTCT 58.388 55.000 0.00 0.00 0.00 3.41
3195 10048 0.599060 GGATAGCCTAGCGACCTGTC 59.401 60.000 0.00 0.00 0.00 3.51
3196 10049 0.106167 TGGATAGCCTAGCGACCTGT 60.106 55.000 0.00 0.00 34.31 4.00
3197 10050 1.261480 ATGGATAGCCTAGCGACCTG 58.739 55.000 0.00 0.00 34.31 4.00
3198 10051 2.901338 TATGGATAGCCTAGCGACCT 57.099 50.000 0.00 0.00 34.31 3.85
3199 10052 3.090037 TCTTATGGATAGCCTAGCGACC 58.910 50.000 0.00 0.00 34.31 4.79
3200 10053 4.993029 ATCTTATGGATAGCCTAGCGAC 57.007 45.455 0.00 0.00 32.04 5.19
3201 10054 7.476540 TTTAATCTTATGGATAGCCTAGCGA 57.523 36.000 0.00 0.00 33.71 4.93
3202 10055 8.723942 ATTTTAATCTTATGGATAGCCTAGCG 57.276 34.615 0.00 0.00 33.71 4.26
3230 10083 6.106673 GCAAATAGTAAGTCACCTTGCTCTA 58.893 40.000 0.00 0.00 41.92 2.43
3232 10085 4.095036 GGCAAATAGTAAGTCACCTTGCTC 59.905 45.833 0.00 0.00 41.92 4.26
3237 10090 2.241430 GGGGGCAAATAGTAAGTCACCT 59.759 50.000 0.00 0.00 0.00 4.00
3239 10092 3.359695 TGGGGGCAAATAGTAAGTCAC 57.640 47.619 0.00 0.00 0.00 3.67
3247 10100 3.826729 GGCTACTTAATGGGGGCAAATAG 59.173 47.826 0.00 0.00 0.00 1.73
3250 10103 1.359474 TGGCTACTTAATGGGGGCAAA 59.641 47.619 0.00 0.00 0.00 3.68
3251 10104 1.003646 TGGCTACTTAATGGGGGCAA 58.996 50.000 0.00 0.00 0.00 4.52
3280 10133 9.393512 CCACTTCAGATCTTAAATCTTCAGAAT 57.606 33.333 0.00 0.00 0.00 2.40
3281 10134 8.597167 TCCACTTCAGATCTTAAATCTTCAGAA 58.403 33.333 0.00 0.00 0.00 3.02
3282 10135 8.138928 TCCACTTCAGATCTTAAATCTTCAGA 57.861 34.615 0.00 0.00 0.00 3.27
3283 10136 7.011295 GCTCCACTTCAGATCTTAAATCTTCAG 59.989 40.741 0.00 0.00 0.00 3.02
3284 10137 6.820656 GCTCCACTTCAGATCTTAAATCTTCA 59.179 38.462 0.00 0.00 0.00 3.02
3285 10138 6.820656 TGCTCCACTTCAGATCTTAAATCTTC 59.179 38.462 0.00 0.00 0.00 2.87
3286 10139 6.715280 TGCTCCACTTCAGATCTTAAATCTT 58.285 36.000 0.00 0.00 0.00 2.40
3287 10140 6.155910 TCTGCTCCACTTCAGATCTTAAATCT 59.844 38.462 0.00 0.00 34.69 2.40
3288 10141 6.344500 TCTGCTCCACTTCAGATCTTAAATC 58.656 40.000 0.00 0.00 34.69 2.17
3289 10142 6.305272 TCTGCTCCACTTCAGATCTTAAAT 57.695 37.500 0.00 0.00 34.69 1.40
3290 10143 5.745312 TCTGCTCCACTTCAGATCTTAAA 57.255 39.130 0.00 0.00 34.69 1.52
3291 10144 5.946942 ATCTGCTCCACTTCAGATCTTAA 57.053 39.130 0.00 0.00 44.23 1.85
3292 10145 5.946942 AATCTGCTCCACTTCAGATCTTA 57.053 39.130 5.36 0.00 46.11 2.10
3293 10146 4.840716 AATCTGCTCCACTTCAGATCTT 57.159 40.909 5.36 0.00 46.11 2.40
3294 10147 4.840716 AAATCTGCTCCACTTCAGATCT 57.159 40.909 5.36 0.00 46.11 2.75
3295 10148 6.344500 TCTTAAATCTGCTCCACTTCAGATC 58.656 40.000 5.36 0.00 46.11 2.75
3297 10150 5.745312 TCTTAAATCTGCTCCACTTCAGA 57.255 39.130 0.00 0.00 42.72 3.27
3298 10151 6.258287 CAGATCTTAAATCTGCTCCACTTCAG 59.742 42.308 11.93 0.00 39.03 3.02
3299 10152 6.111382 CAGATCTTAAATCTGCTCCACTTCA 58.889 40.000 11.93 0.00 39.03 3.02
3300 10153 5.526846 CCAGATCTTAAATCTGCTCCACTTC 59.473 44.000 16.14 0.00 43.03 3.01
3301 10154 5.190528 TCCAGATCTTAAATCTGCTCCACTT 59.809 40.000 16.14 0.00 43.03 3.16
3302 10155 4.718774 TCCAGATCTTAAATCTGCTCCACT 59.281 41.667 16.14 0.00 43.03 4.00
3303 10156 5.028549 TCCAGATCTTAAATCTGCTCCAC 57.971 43.478 16.14 0.00 43.03 4.02
3304 10157 4.718774 ACTCCAGATCTTAAATCTGCTCCA 59.281 41.667 16.14 5.32 43.03 3.86
3305 10158 5.289083 ACTCCAGATCTTAAATCTGCTCC 57.711 43.478 16.14 0.00 43.03 4.70
3306 10159 7.042119 GCTAAACTCCAGATCTTAAATCTGCTC 60.042 40.741 16.14 0.00 43.03 4.26
3307 10160 6.765512 GCTAAACTCCAGATCTTAAATCTGCT 59.234 38.462 16.14 4.73 43.03 4.24
3308 10161 6.017523 GGCTAAACTCCAGATCTTAAATCTGC 60.018 42.308 16.14 7.42 43.03 4.26
3309 10162 7.278875 AGGCTAAACTCCAGATCTTAAATCTG 58.721 38.462 15.24 15.24 43.76 2.90
3310 10163 7.444703 AGGCTAAACTCCAGATCTTAAATCT 57.555 36.000 0.00 0.00 0.00 2.40
3311 10164 7.386573 GCTAGGCTAAACTCCAGATCTTAAATC 59.613 40.741 0.00 0.00 0.00 2.17
3312 10165 7.071824 AGCTAGGCTAAACTCCAGATCTTAAAT 59.928 37.037 0.00 0.00 36.99 1.40
3313 10166 6.384305 AGCTAGGCTAAACTCCAGATCTTAAA 59.616 38.462 0.00 0.00 36.99 1.52
3314 10167 5.900123 AGCTAGGCTAAACTCCAGATCTTAA 59.100 40.000 0.00 0.00 36.99 1.85
3315 10168 5.459505 AGCTAGGCTAAACTCCAGATCTTA 58.540 41.667 0.00 0.00 36.99 2.10
3316 10169 4.294347 AGCTAGGCTAAACTCCAGATCTT 58.706 43.478 0.00 0.00 36.99 2.40
3317 10170 3.922375 AGCTAGGCTAAACTCCAGATCT 58.078 45.455 0.00 0.00 36.99 2.75
3318 10171 4.376146 CAAGCTAGGCTAAACTCCAGATC 58.624 47.826 0.00 0.00 38.25 2.75
3319 10172 3.432890 GCAAGCTAGGCTAAACTCCAGAT 60.433 47.826 3.19 0.00 38.25 2.90
3320 10173 2.093447 GCAAGCTAGGCTAAACTCCAGA 60.093 50.000 3.19 0.00 38.25 3.86
3321 10174 2.093235 AGCAAGCTAGGCTAAACTCCAG 60.093 50.000 10.82 0.00 40.47 3.86
3322 10175 1.909302 AGCAAGCTAGGCTAAACTCCA 59.091 47.619 10.82 0.00 40.47 3.86
3323 10176 2.556257 GAGCAAGCTAGGCTAAACTCC 58.444 52.381 12.33 0.00 42.78 3.85
3324 10177 2.093447 TGGAGCAAGCTAGGCTAAACTC 60.093 50.000 12.33 1.22 42.78 3.01
3325 10178 1.909302 TGGAGCAAGCTAGGCTAAACT 59.091 47.619 12.33 0.00 42.78 2.66
3326 10179 2.403252 TGGAGCAAGCTAGGCTAAAC 57.597 50.000 12.33 7.29 42.78 2.01
3327 10180 2.991250 CTTGGAGCAAGCTAGGCTAAA 58.009 47.619 12.33 9.40 42.78 1.85
3328 10181 2.698855 CTTGGAGCAAGCTAGGCTAA 57.301 50.000 12.33 4.48 42.78 3.09
3340 10193 1.217244 CCATGGCTTTGCTTGGAGC 59.783 57.895 0.00 0.00 42.82 4.70
3341 10194 1.217244 GCCATGGCTTTGCTTGGAG 59.783 57.895 29.98 0.00 35.13 3.86
3342 10195 2.285024 GGCCATGGCTTTGCTTGGA 61.285 57.895 34.70 0.00 41.60 3.53
3343 10196 2.234913 GAGGCCATGGCTTTGCTTGG 62.235 60.000 34.70 0.00 38.98 3.61
3344 10197 1.217244 GAGGCCATGGCTTTGCTTG 59.783 57.895 34.70 0.00 38.98 4.01
3345 10198 1.986210 GGAGGCCATGGCTTTGCTT 60.986 57.895 34.70 14.31 38.98 3.91
3346 10199 2.363406 GGAGGCCATGGCTTTGCT 60.363 61.111 34.70 23.51 38.98 3.91
3347 10200 1.829523 TTTGGAGGCCATGGCTTTGC 61.830 55.000 34.70 26.68 38.98 3.68
3348 10201 0.037046 GTTTGGAGGCCATGGCTTTG 60.037 55.000 34.70 0.00 38.98 2.77
3349 10202 0.471591 TGTTTGGAGGCCATGGCTTT 60.472 50.000 34.70 23.56 38.98 3.51
3350 10203 0.901580 CTGTTTGGAGGCCATGGCTT 60.902 55.000 34.70 29.53 38.98 4.35
3351 10204 1.304713 CTGTTTGGAGGCCATGGCT 60.305 57.895 34.70 21.29 42.48 4.75
3352 10205 1.304381 TCTGTTTGGAGGCCATGGC 60.304 57.895 29.47 29.47 41.06 4.40
3353 10206 1.308069 CGTCTGTTTGGAGGCCATGG 61.308 60.000 7.63 7.63 31.53 3.66
3354 10207 1.926511 GCGTCTGTTTGGAGGCCATG 61.927 60.000 5.01 0.00 40.05 3.66
3355 10208 1.675641 GCGTCTGTTTGGAGGCCAT 60.676 57.895 5.01 0.00 40.05 4.40
3356 10209 2.281484 GCGTCTGTTTGGAGGCCA 60.281 61.111 5.01 0.00 40.05 5.36
3357 10210 2.032681 AGCGTCTGTTTGGAGGCC 59.967 61.111 0.00 0.00 44.91 5.19
3358 10211 2.970974 GCAGCGTCTGTTTGGAGGC 61.971 63.158 8.32 0.00 44.38 4.70
3359 10212 0.957395 ATGCAGCGTCTGTTTGGAGG 60.957 55.000 8.32 0.00 33.43 4.30
3360 10213 1.725641 TATGCAGCGTCTGTTTGGAG 58.274 50.000 8.32 0.00 33.43 3.86
3361 10214 2.009051 CATATGCAGCGTCTGTTTGGA 58.991 47.619 8.32 0.00 33.43 3.53
3362 10215 2.009051 TCATATGCAGCGTCTGTTTGG 58.991 47.619 0.00 0.00 33.43 3.28
3363 10216 3.745332 TTCATATGCAGCGTCTGTTTG 57.255 42.857 0.00 2.97 33.43 2.93
3364 10217 3.940852 TGATTCATATGCAGCGTCTGTTT 59.059 39.130 0.00 0.69 33.43 2.83
3365 10218 3.534554 TGATTCATATGCAGCGTCTGTT 58.465 40.909 0.00 0.97 33.43 3.16
3366 10219 3.183793 TGATTCATATGCAGCGTCTGT 57.816 42.857 0.00 0.00 33.43 3.41
3367 10220 3.059120 CCTTGATTCATATGCAGCGTCTG 60.059 47.826 0.00 0.00 34.12 3.51
3368 10221 3.136763 CCTTGATTCATATGCAGCGTCT 58.863 45.455 0.00 0.00 0.00 4.18
3369 10222 3.059325 GTCCTTGATTCATATGCAGCGTC 60.059 47.826 0.00 0.00 0.00 5.19
3370 10223 2.874701 GTCCTTGATTCATATGCAGCGT 59.125 45.455 0.00 0.00 0.00 5.07
3371 10224 2.874086 TGTCCTTGATTCATATGCAGCG 59.126 45.455 0.00 0.00 0.00 5.18
3372 10225 4.261489 CCTTGTCCTTGATTCATATGCAGC 60.261 45.833 0.00 0.00 0.00 5.25
3373 10226 4.277672 CCCTTGTCCTTGATTCATATGCAG 59.722 45.833 0.00 0.00 0.00 4.41
3374 10227 4.209538 CCCTTGTCCTTGATTCATATGCA 58.790 43.478 0.00 0.00 0.00 3.96
3375 10228 3.571401 CCCCTTGTCCTTGATTCATATGC 59.429 47.826 0.00 0.00 0.00 3.14
3376 10229 5.052693 TCCCCTTGTCCTTGATTCATATG 57.947 43.478 0.00 0.00 0.00 1.78
3377 10230 5.732331 TTCCCCTTGTCCTTGATTCATAT 57.268 39.130 0.00 0.00 0.00 1.78
3378 10231 5.222233 TGTTTCCCCTTGTCCTTGATTCATA 60.222 40.000 0.00 0.00 0.00 2.15
3379 10232 4.089361 GTTTCCCCTTGTCCTTGATTCAT 58.911 43.478 0.00 0.00 0.00 2.57
3380 10233 3.117322 TGTTTCCCCTTGTCCTTGATTCA 60.117 43.478 0.00 0.00 0.00 2.57
3381 10234 3.496331 TGTTTCCCCTTGTCCTTGATTC 58.504 45.455 0.00 0.00 0.00 2.52
3382 10235 3.611025 TGTTTCCCCTTGTCCTTGATT 57.389 42.857 0.00 0.00 0.00 2.57
3383 10236 3.500343 CTTGTTTCCCCTTGTCCTTGAT 58.500 45.455 0.00 0.00 0.00 2.57
3384 10237 2.944129 CTTGTTTCCCCTTGTCCTTGA 58.056 47.619 0.00 0.00 0.00 3.02
3385 10238 1.341209 GCTTGTTTCCCCTTGTCCTTG 59.659 52.381 0.00 0.00 0.00 3.61
3386 10239 1.217942 AGCTTGTTTCCCCTTGTCCTT 59.782 47.619 0.00 0.00 0.00 3.36
3387 10240 0.853530 AGCTTGTTTCCCCTTGTCCT 59.146 50.000 0.00 0.00 0.00 3.85
3388 10241 2.579410 TAGCTTGTTTCCCCTTGTCC 57.421 50.000 0.00 0.00 0.00 4.02
3389 10242 2.164422 GCATAGCTTGTTTCCCCTTGTC 59.836 50.000 0.00 0.00 0.00 3.18
3390 10243 2.171003 GCATAGCTTGTTTCCCCTTGT 58.829 47.619 0.00 0.00 0.00 3.16
3391 10244 2.424956 GAGCATAGCTTGTTTCCCCTTG 59.575 50.000 0.00 0.00 39.88 3.61
3392 10245 2.728007 GAGCATAGCTTGTTTCCCCTT 58.272 47.619 0.00 0.00 39.88 3.95
3393 10246 1.407437 CGAGCATAGCTTGTTTCCCCT 60.407 52.381 0.00 0.00 39.88 4.79
3394 10247 1.017387 CGAGCATAGCTTGTTTCCCC 58.983 55.000 0.00 0.00 39.88 4.81
3395 10248 0.378610 GCGAGCATAGCTTGTTTCCC 59.621 55.000 7.97 0.00 41.74 3.97
3396 10249 1.086696 TGCGAGCATAGCTTGTTTCC 58.913 50.000 7.97 0.00 41.74 3.13
3397 10250 2.160417 AGTTGCGAGCATAGCTTGTTTC 59.840 45.455 7.97 0.02 41.74 2.78
3398 10251 2.154462 AGTTGCGAGCATAGCTTGTTT 58.846 42.857 7.97 0.00 41.74 2.83
3399 10252 1.734465 GAGTTGCGAGCATAGCTTGTT 59.266 47.619 7.97 0.00 41.74 2.83
3400 10253 1.363744 GAGTTGCGAGCATAGCTTGT 58.636 50.000 7.97 0.00 41.74 3.16
3401 10254 0.654683 GGAGTTGCGAGCATAGCTTG 59.345 55.000 0.00 1.86 39.88 4.01
3402 10255 0.250234 TGGAGTTGCGAGCATAGCTT 59.750 50.000 0.00 0.00 39.88 3.74
3403 10256 0.179089 CTGGAGTTGCGAGCATAGCT 60.179 55.000 0.00 0.00 43.88 3.32
3404 10257 0.460987 ACTGGAGTTGCGAGCATAGC 60.461 55.000 0.00 0.00 37.19 2.97
3405 10258 1.284657 CACTGGAGTTGCGAGCATAG 58.715 55.000 0.00 0.00 0.00 2.23
3406 10259 3.441244 CACTGGAGTTGCGAGCATA 57.559 52.632 0.00 0.00 0.00 3.14
3407 10260 4.291047 CACTGGAGTTGCGAGCAT 57.709 55.556 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.