Multiple sequence alignment - TraesCS3A01G470300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G470300 chr3A 100.000 3429 0 0 1 3429 702409031 702405603 0.000000e+00 6333.0
1 TraesCS3A01G470300 chr3A 86.166 1012 79 26 1 962 746409500 746410500 0.000000e+00 1037.0
2 TraesCS3A01G470300 chr3A 85.356 997 78 31 1 938 624183601 624184588 0.000000e+00 970.0
3 TraesCS3A01G470300 chr3A 99.426 523 3 0 2907 3429 702388498 702387976 0.000000e+00 950.0
4 TraesCS3A01G470300 chr3A 85.391 575 73 9 2722 3290 701440283 701440852 1.370000e-163 586.0
5 TraesCS3A01G470300 chr3A 87.972 424 43 6 21 439 691301980 691301560 8.550000e-136 494.0
6 TraesCS3A01G470300 chr3A 76.587 1008 156 44 19 969 577079649 577078665 6.660000e-132 481.0
7 TraesCS3A01G470300 chr3A 75.109 1145 186 55 1155 2233 700739286 700740397 8.730000e-121 444.0
8 TraesCS3A01G470300 chr3A 78.205 390 69 9 1831 2206 655567581 655567194 5.720000e-58 235.0
9 TraesCS3A01G470300 chr3A 82.305 243 27 9 658 887 221670806 221670567 2.700000e-46 196.0
10 TraesCS3A01G470300 chr3A 83.626 171 19 6 3063 3229 701363237 701363402 5.930000e-33 152.0
11 TraesCS3A01G470300 chr3A 79.426 209 31 11 2741 2943 701306097 701306299 1.660000e-28 137.0
12 TraesCS3A01G470300 chrUn 91.976 1321 70 2 1293 2598 41197522 41196223 0.000000e+00 1820.0
13 TraesCS3A01G470300 chrUn 99.426 523 3 0 2907 3429 333756915 333756393 0.000000e+00 950.0
14 TraesCS3A01G470300 chrUn 89.311 711 58 10 2722 3429 41196224 41195529 0.000000e+00 876.0
15 TraesCS3A01G470300 chrUn 78.618 608 93 14 1872 2465 41057775 41058359 5.410000e-98 368.0
16 TraesCS3A01G470300 chrUn 87.500 272 16 7 976 1239 41197784 41197523 7.190000e-77 298.0
17 TraesCS3A01G470300 chrUn 87.500 272 16 7 976 1239 463316394 463316133 7.190000e-77 298.0
18 TraesCS3A01G470300 chr3D 89.024 1403 112 15 1191 2576 569397773 569396396 0.000000e+00 1700.0
19 TraesCS3A01G470300 chr3D 89.650 686 65 4 1191 1874 569399590 569398909 0.000000e+00 869.0
20 TraesCS3A01G470300 chr3D 89.650 686 66 4 1191 1874 569400502 569399820 0.000000e+00 869.0
21 TraesCS3A01G470300 chr3D 89.520 687 65 5 1191 1874 569401414 569400732 0.000000e+00 863.0
22 TraesCS3A01G470300 chr3D 88.748 711 67 8 2722 3429 566801730 566802430 0.000000e+00 857.0
23 TraesCS3A01G470300 chr3D 89.067 686 70 3 1191 1874 569398685 569398003 0.000000e+00 846.0
24 TraesCS3A01G470300 chr3D 88.646 687 60 8 1191 1874 569402315 569401644 0.000000e+00 821.0
25 TraesCS3A01G470300 chr3D 88.351 661 61 6 1951 2595 566801068 566801728 0.000000e+00 780.0
26 TraesCS3A01G470300 chr3D 79.247 1036 127 50 1 963 304027279 304026259 2.880000e-180 641.0
27 TraesCS3A01G470300 chr3D 76.394 1309 214 48 1181 2465 568017500 568018737 4.860000e-173 617.0
28 TraesCS3A01G470300 chr3D 76.512 843 165 21 1452 2273 567371209 567372039 2.450000e-116 429.0
29 TraesCS3A01G470300 chr3D 80.995 563 83 12 2732 3290 567372338 567372880 3.160000e-115 425.0
30 TraesCS3A01G470300 chr3D 82.135 459 78 4 1188 1645 520595050 520595505 1.150000e-104 390.0
31 TraesCS3A01G470300 chr3D 87.774 319 32 4 2766 3082 569396429 569396116 1.940000e-97 366.0
32 TraesCS3A01G470300 chr3D 77.751 418 78 8 1806 2209 520440649 520441065 3.420000e-60 243.0
33 TraesCS3A01G470300 chr3D 91.176 136 11 1 2588 2723 210622415 210622549 2.100000e-42 183.0
34 TraesCS3A01G470300 chr3D 82.243 214 33 4 3018 3227 567904518 567904730 2.720000e-41 180.0
35 TraesCS3A01G470300 chr3D 83.708 178 23 5 3056 3229 568037704 568037879 2.740000e-36 163.0
36 TraesCS3A01G470300 chr6D 88.986 917 49 22 1 867 435532736 435533650 0.000000e+00 1086.0
37 TraesCS3A01G470300 chr7D 86.554 1004 70 31 19 968 41796027 41795035 0.000000e+00 1046.0
38 TraesCS3A01G470300 chr7D 88.372 129 15 0 2596 2724 627228348 627228220 4.580000e-34 156.0
39 TraesCS3A01G470300 chr1A 86.131 995 80 30 19 963 535341033 535342019 0.000000e+00 1020.0
40 TraesCS3A01G470300 chr1A 91.241 137 11 1 2596 2731 380966226 380966090 5.840000e-43 185.0
41 TraesCS3A01G470300 chr1A 79.392 296 31 16 650 922 8686174 8686462 7.560000e-42 182.0
42 TraesCS3A01G470300 chr1A 93.548 62 3 1 657 717 9302974 9303035 1.310000e-14 91.6
43 TraesCS3A01G470300 chr7B 83.607 1037 90 33 1 967 558362919 558361893 0.000000e+00 900.0
44 TraesCS3A01G470300 chr5D 86.733 799 55 18 209 963 407006912 407007703 0.000000e+00 841.0
45 TraesCS3A01G470300 chr5B 84.489 548 48 17 21 558 463234039 463234559 1.100000e-139 507.0
46 TraesCS3A01G470300 chr5B 81.887 265 33 9 720 973 463234652 463234912 3.470000e-50 209.0
47 TraesCS3A01G470300 chr5B 93.798 129 8 0 2597 2725 121673191 121673319 9.710000e-46 195.0
48 TraesCS3A01G470300 chr5B 91.241 137 12 0 2589 2725 125256966 125257102 1.620000e-43 187.0
49 TraesCS3A01G470300 chr5B 88.235 153 14 3 2575 2726 202239378 202239229 2.720000e-41 180.0
50 TraesCS3A01G470300 chr3B 82.549 510 84 4 1137 1645 685471566 685472071 8.730000e-121 444.0
51 TraesCS3A01G470300 chr3B 78.406 389 70 7 1831 2206 684505136 684504749 1.230000e-59 241.0
52 TraesCS3A01G470300 chr4A 82.990 388 27 22 608 963 563357703 563358083 7.140000e-82 315.0
53 TraesCS3A01G470300 chr4B 93.985 133 7 1 2594 2725 107663039 107663171 2.090000e-47 200.0
54 TraesCS3A01G470300 chr5A 83.810 210 24 7 754 963 260673323 260673522 1.260000e-44 191.0
55 TraesCS3A01G470300 chr5A 92.481 133 9 1 2595 2726 348073655 348073523 4.520000e-44 189.0
56 TraesCS3A01G470300 chr4D 91.367 139 11 1 2587 2724 296698200 296698338 4.520000e-44 189.0
57 TraesCS3A01G470300 chr1B 90.647 139 13 0 2590 2728 621622788 621622650 5.840000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G470300 chr3A 702405603 702409031 3428 True 6333.000000 6333 100.000000 1 3429 1 chr3A.!!$R6 3428
1 TraesCS3A01G470300 chr3A 746409500 746410500 1000 False 1037.000000 1037 86.166000 1 962 1 chr3A.!!$F6 961
2 TraesCS3A01G470300 chr3A 624183601 624184588 987 False 970.000000 970 85.356000 1 938 1 chr3A.!!$F1 937
3 TraesCS3A01G470300 chr3A 702387976 702388498 522 True 950.000000 950 99.426000 2907 3429 1 chr3A.!!$R5 522
4 TraesCS3A01G470300 chr3A 701440283 701440852 569 False 586.000000 586 85.391000 2722 3290 1 chr3A.!!$F5 568
5 TraesCS3A01G470300 chr3A 577078665 577079649 984 True 481.000000 481 76.587000 19 969 1 chr3A.!!$R2 950
6 TraesCS3A01G470300 chr3A 700739286 700740397 1111 False 444.000000 444 75.109000 1155 2233 1 chr3A.!!$F2 1078
7 TraesCS3A01G470300 chrUn 41195529 41197784 2255 True 998.000000 1820 89.595667 976 3429 3 chrUn.!!$R3 2453
8 TraesCS3A01G470300 chrUn 333756393 333756915 522 True 950.000000 950 99.426000 2907 3429 1 chrUn.!!$R1 522
9 TraesCS3A01G470300 chrUn 41057775 41058359 584 False 368.000000 368 78.618000 1872 2465 1 chrUn.!!$F1 593
10 TraesCS3A01G470300 chr3D 569396116 569402315 6199 True 904.857143 1700 89.047286 1191 3082 7 chr3D.!!$R2 1891
11 TraesCS3A01G470300 chr3D 566801068 566802430 1362 False 818.500000 857 88.549500 1951 3429 2 chr3D.!!$F7 1478
12 TraesCS3A01G470300 chr3D 304026259 304027279 1020 True 641.000000 641 79.247000 1 963 1 chr3D.!!$R1 962
13 TraesCS3A01G470300 chr3D 568017500 568018737 1237 False 617.000000 617 76.394000 1181 2465 1 chr3D.!!$F5 1284
14 TraesCS3A01G470300 chr3D 567371209 567372880 1671 False 427.000000 429 78.753500 1452 3290 2 chr3D.!!$F8 1838
15 TraesCS3A01G470300 chr6D 435532736 435533650 914 False 1086.000000 1086 88.986000 1 867 1 chr6D.!!$F1 866
16 TraesCS3A01G470300 chr7D 41795035 41796027 992 True 1046.000000 1046 86.554000 19 968 1 chr7D.!!$R1 949
17 TraesCS3A01G470300 chr1A 535341033 535342019 986 False 1020.000000 1020 86.131000 19 963 1 chr1A.!!$F3 944
18 TraesCS3A01G470300 chr7B 558361893 558362919 1026 True 900.000000 900 83.607000 1 967 1 chr7B.!!$R1 966
19 TraesCS3A01G470300 chr5D 407006912 407007703 791 False 841.000000 841 86.733000 209 963 1 chr5D.!!$F1 754
20 TraesCS3A01G470300 chr5B 463234039 463234912 873 False 358.000000 507 83.188000 21 973 2 chr5B.!!$F3 952
21 TraesCS3A01G470300 chr3B 685471566 685472071 505 False 444.000000 444 82.549000 1137 1645 1 chr3B.!!$F1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
500 544 2.073816 TGACCGCGGAGAAGATTTTTC 58.926 47.619 35.9 15.39 0.0 2.29 F
1038 1211 0.737219 CACTAGCTCAGCCCAAATGC 59.263 55.000 0.0 0.00 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1710 4678 0.31904 CATCGGGGCAGTCTATGTCG 60.319 60.0 0.0 0.0 32.79 4.35 R
2599 7449 0.03918 GGAATTTTGGGACGGAGGGT 59.961 55.0 0.0 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 72 7.500892 CCTTTTTATTTTGCTACAACCCCTTTT 59.499 33.333 0.00 0.00 0.00 2.27
218 228 2.089980 GTGAAGAGTGCTGCATCCAAT 58.910 47.619 5.27 0.00 30.70 3.16
235 248 3.144871 TGCCGTCGATGTCGGGAT 61.145 61.111 14.01 0.00 46.90 3.85
326 339 2.478831 GGATGCGTTTTCTTTTTGCCA 58.521 42.857 0.00 0.00 0.00 4.92
349 364 5.559427 AACCAATTTTGTTTTTGCTGGAC 57.441 34.783 0.00 0.00 0.00 4.02
351 366 4.198530 CCAATTTTGTTTTTGCTGGACCT 58.801 39.130 0.00 0.00 0.00 3.85
363 381 5.643379 TTGCTGGACCTGATGTATTTTTC 57.357 39.130 1.91 0.00 0.00 2.29
432 458 4.764679 AATGCTCATGTCGTTTTTGCTA 57.235 36.364 0.00 0.00 0.00 3.49
500 544 2.073816 TGACCGCGGAGAAGATTTTTC 58.926 47.619 35.90 15.39 0.00 2.29
601 663 2.279517 CCACCCGAGCGCTATCAC 60.280 66.667 11.50 0.00 0.00 3.06
861 1026 5.209818 TGTAAAAGAAGACACCTGACGAT 57.790 39.130 0.00 0.00 0.00 3.73
875 1040 5.049474 CACCTGACGATAGAAGATGAGAGAG 60.049 48.000 0.00 0.00 41.38 3.20
876 1041 5.163248 ACCTGACGATAGAAGATGAGAGAGA 60.163 44.000 0.00 0.00 41.38 3.10
902 1067 4.085619 CGTACGGCTACGCGTTATTTTATT 60.086 41.667 20.78 0.00 46.04 1.40
963 1128 3.169242 GGCCCCTAGTAGTGCCCC 61.169 72.222 14.28 0.00 37.94 5.80
969 1134 2.225650 CCCCTAGTAGTGCCCCATATCT 60.226 54.545 0.00 0.00 0.00 1.98
970 1135 3.012502 CCCCTAGTAGTGCCCCATATCTA 59.987 52.174 0.00 0.00 0.00 1.98
971 1136 4.327010 CCCCTAGTAGTGCCCCATATCTAT 60.327 50.000 0.00 0.00 0.00 1.98
972 1137 5.103215 CCCCTAGTAGTGCCCCATATCTATA 60.103 48.000 0.00 0.00 0.00 1.31
973 1138 6.413325 CCCCTAGTAGTGCCCCATATCTATAT 60.413 46.154 0.00 0.00 0.00 0.86
974 1139 6.722129 CCCTAGTAGTGCCCCATATCTATATC 59.278 46.154 0.00 0.00 0.00 1.63
982 1147 3.322254 CCCCATATCTATATCGTCCAGGC 59.678 52.174 0.00 0.00 0.00 4.85
1007 1172 2.362077 GCCCAGCTTGTTTGAGAAAGAA 59.638 45.455 0.00 0.00 0.00 2.52
1009 1174 4.680440 GCCCAGCTTGTTTGAGAAAGAAAA 60.680 41.667 0.00 0.00 0.00 2.29
1019 1184 6.983890 TGTTTGAGAAAGAAAAATGGGCTAAC 59.016 34.615 0.00 0.00 0.00 2.34
1038 1211 0.737219 CACTAGCTCAGCCCAAATGC 59.263 55.000 0.00 0.00 0.00 3.56
1063 1236 2.012673 GCGAGAAAGACCTACCTACGA 58.987 52.381 0.00 0.00 0.00 3.43
1064 1237 2.031930 GCGAGAAAGACCTACCTACGAG 59.968 54.545 0.00 0.00 0.00 4.18
1067 1240 4.516323 GAGAAAGACCTACCTACGAGTCT 58.484 47.826 0.00 0.00 41.25 3.24
1068 1241 5.669477 GAGAAAGACCTACCTACGAGTCTA 58.331 45.833 0.00 0.00 38.61 2.59
1070 1243 3.451141 AGACCTACCTACGAGTCTACG 57.549 52.381 0.00 0.00 37.81 3.51
1071 1244 3.027412 AGACCTACCTACGAGTCTACGA 58.973 50.000 0.00 0.00 37.81 3.43
1072 1245 3.120041 GACCTACCTACGAGTCTACGAC 58.880 54.545 0.00 0.00 37.03 4.34
1073 1246 2.763448 ACCTACCTACGAGTCTACGACT 59.237 50.000 0.00 0.00 46.42 4.18
1082 1255 2.423446 AGTCTACGACTCCTCCTTCC 57.577 55.000 0.00 0.00 38.71 3.46
1111 1284 0.908910 TCACAACCACAGTCCACAGT 59.091 50.000 0.00 0.00 0.00 3.55
1126 1299 2.122547 AGTTCCCTCCACCACGGT 60.123 61.111 0.00 0.00 35.57 4.83
1483 2589 4.736896 ACGCCTTCTTCCGTCCGC 62.737 66.667 0.00 0.00 31.00 5.54
1536 2648 0.966370 AGAACTACGCCCGCTTCTCT 60.966 55.000 0.00 0.00 0.00 3.10
1572 2686 3.000684 ACTCGTCAGTATGCTCCACTA 57.999 47.619 0.00 0.00 34.76 2.74
1691 4659 2.730382 TGTCTACACATTAGGCTCCGA 58.270 47.619 0.00 0.00 0.00 4.55
1840 6627 0.032678 CACCACTGCTGAGTCGTTCT 59.967 55.000 0.00 0.00 0.00 3.01
1893 6680 2.783135 GCTGACCTGTTTGAGATGGAA 58.217 47.619 0.00 0.00 0.00 3.53
2125 6924 1.278985 AGATTGACGTGGATGGCAAGA 59.721 47.619 0.00 0.00 0.00 3.02
2209 7008 4.794169 AGTTTCACATACATTGTTTCCGC 58.206 39.130 0.00 0.00 36.00 5.54
2224 7023 1.188863 TCCGCCACTAGAAGGTTACC 58.811 55.000 0.00 0.00 0.00 2.85
2265 7064 8.534496 CCTTTCCTTTGACCAGATGATTATTTT 58.466 33.333 0.00 0.00 0.00 1.82
2266 7065 9.362539 CTTTCCTTTGACCAGATGATTATTTTG 57.637 33.333 0.00 0.00 0.00 2.44
2267 7066 8.421249 TTCCTTTGACCAGATGATTATTTTGT 57.579 30.769 0.00 0.00 0.00 2.83
2268 7067 7.829725 TCCTTTGACCAGATGATTATTTTGTG 58.170 34.615 0.00 0.00 0.00 3.33
2269 7068 7.451255 TCCTTTGACCAGATGATTATTTTGTGT 59.549 33.333 0.00 0.00 0.00 3.72
2270 7069 8.739039 CCTTTGACCAGATGATTATTTTGTGTA 58.261 33.333 0.00 0.00 0.00 2.90
2271 7070 9.559958 CTTTGACCAGATGATTATTTTGTGTAC 57.440 33.333 0.00 0.00 0.00 2.90
2272 7071 8.628630 TTGACCAGATGATTATTTTGTGTACA 57.371 30.769 0.00 0.00 0.00 2.90
2273 7072 8.806429 TGACCAGATGATTATTTTGTGTACAT 57.194 30.769 0.00 0.00 0.00 2.29
2274 7073 9.241919 TGACCAGATGATTATTTTGTGTACATT 57.758 29.630 0.00 0.00 0.00 2.71
2393 7215 5.173312 CAGTACGTATTAACTGAATCCGCTG 59.827 44.000 10.09 0.00 44.79 5.18
2411 7233 0.534412 TGTGAGCCTGCTAGCTTCTC 59.466 55.000 17.23 17.85 45.15 2.87
2419 7241 3.871485 CCTGCTAGCTTCTCTGTTGATT 58.129 45.455 17.23 0.00 0.00 2.57
2422 7244 5.293079 CCTGCTAGCTTCTCTGTTGATTTAC 59.707 44.000 17.23 0.00 0.00 2.01
2425 7247 6.881065 TGCTAGCTTCTCTGTTGATTTACAAT 59.119 34.615 17.23 0.00 40.76 2.71
2458 7280 6.681777 ACCAAGAAGCTTTGATTGTTACATC 58.318 36.000 0.00 0.00 0.00 3.06
2567 7416 9.903682 CTGACTCATGTTTATGTTTTCTTGAAT 57.096 29.630 0.00 0.00 35.73 2.57
2579 7429 8.822652 ATGTTTTCTTGAATTGAAGAATGACC 57.177 30.769 18.88 9.14 40.74 4.02
2587 7437 7.268199 TGAATTGAAGAATGACCATGCTATC 57.732 36.000 0.00 0.00 0.00 2.08
2598 7448 6.985188 TGACCATGCTATCTTTCTTTGTAC 57.015 37.500 0.00 0.00 0.00 2.90
2599 7449 6.472016 TGACCATGCTATCTTTCTTTGTACA 58.528 36.000 0.00 0.00 0.00 2.90
2600 7450 6.371548 TGACCATGCTATCTTTCTTTGTACAC 59.628 38.462 0.00 0.00 0.00 2.90
2601 7451 5.648092 ACCATGCTATCTTTCTTTGTACACC 59.352 40.000 0.00 0.00 0.00 4.16
2602 7452 5.066505 CCATGCTATCTTTCTTTGTACACCC 59.933 44.000 0.00 0.00 0.00 4.61
2603 7453 5.499004 TGCTATCTTTCTTTGTACACCCT 57.501 39.130 0.00 0.00 0.00 4.34
2604 7454 5.488341 TGCTATCTTTCTTTGTACACCCTC 58.512 41.667 0.00 0.00 0.00 4.30
2605 7455 4.876679 GCTATCTTTCTTTGTACACCCTCC 59.123 45.833 0.00 0.00 0.00 4.30
2606 7456 3.396260 TCTTTCTTTGTACACCCTCCG 57.604 47.619 0.00 0.00 0.00 4.63
2607 7457 2.701951 TCTTTCTTTGTACACCCTCCGT 59.298 45.455 0.00 0.00 0.00 4.69
2608 7458 2.825861 TTCTTTGTACACCCTCCGTC 57.174 50.000 0.00 0.00 0.00 4.79
2609 7459 0.971386 TCTTTGTACACCCTCCGTCC 59.029 55.000 0.00 0.00 0.00 4.79
2610 7460 0.036671 CTTTGTACACCCTCCGTCCC 60.037 60.000 0.00 0.00 0.00 4.46
2611 7461 0.763604 TTTGTACACCCTCCGTCCCA 60.764 55.000 0.00 0.00 0.00 4.37
2612 7462 0.763604 TTGTACACCCTCCGTCCCAA 60.764 55.000 0.00 0.00 0.00 4.12
2613 7463 0.763604 TGTACACCCTCCGTCCCAAA 60.764 55.000 0.00 0.00 0.00 3.28
2614 7464 0.397564 GTACACCCTCCGTCCCAAAA 59.602 55.000 0.00 0.00 0.00 2.44
2615 7465 1.003928 GTACACCCTCCGTCCCAAAAT 59.996 52.381 0.00 0.00 0.00 1.82
2616 7466 0.481128 ACACCCTCCGTCCCAAAATT 59.519 50.000 0.00 0.00 0.00 1.82
2617 7467 1.173913 CACCCTCCGTCCCAAAATTC 58.826 55.000 0.00 0.00 0.00 2.17
2618 7468 0.039180 ACCCTCCGTCCCAAAATTCC 59.961 55.000 0.00 0.00 0.00 3.01
2619 7469 0.331616 CCCTCCGTCCCAAAATTCCT 59.668 55.000 0.00 0.00 0.00 3.36
2620 7470 1.463674 CCTCCGTCCCAAAATTCCTG 58.536 55.000 0.00 0.00 0.00 3.86
2621 7471 1.271926 CCTCCGTCCCAAAATTCCTGT 60.272 52.381 0.00 0.00 0.00 4.00
2622 7472 2.084546 CTCCGTCCCAAAATTCCTGTC 58.915 52.381 0.00 0.00 0.00 3.51
2623 7473 1.702957 TCCGTCCCAAAATTCCTGTCT 59.297 47.619 0.00 0.00 0.00 3.41
2624 7474 2.907696 TCCGTCCCAAAATTCCTGTCTA 59.092 45.455 0.00 0.00 0.00 2.59
2625 7475 3.328343 TCCGTCCCAAAATTCCTGTCTAA 59.672 43.478 0.00 0.00 0.00 2.10
2626 7476 3.439129 CCGTCCCAAAATTCCTGTCTAAC 59.561 47.826 0.00 0.00 0.00 2.34
2627 7477 4.069304 CGTCCCAAAATTCCTGTCTAACA 58.931 43.478 0.00 0.00 0.00 2.41
2628 7478 4.700213 CGTCCCAAAATTCCTGTCTAACAT 59.300 41.667 0.00 0.00 0.00 2.71
2629 7479 5.183140 CGTCCCAAAATTCCTGTCTAACATT 59.817 40.000 0.00 0.00 0.00 2.71
2630 7480 6.294508 CGTCCCAAAATTCCTGTCTAACATTT 60.295 38.462 0.00 0.00 0.00 2.32
2631 7481 6.868339 GTCCCAAAATTCCTGTCTAACATTTG 59.132 38.462 0.00 0.00 0.00 2.32
2632 7482 6.553100 TCCCAAAATTCCTGTCTAACATTTGT 59.447 34.615 0.00 0.00 0.00 2.83
2633 7483 6.868339 CCCAAAATTCCTGTCTAACATTTGTC 59.132 38.462 0.00 0.00 0.00 3.18
2634 7484 7.255942 CCCAAAATTCCTGTCTAACATTTGTCT 60.256 37.037 0.00 0.00 0.00 3.41
2635 7485 8.792633 CCAAAATTCCTGTCTAACATTTGTCTA 58.207 33.333 0.00 0.00 0.00 2.59
2636 7486 9.831737 CAAAATTCCTGTCTAACATTTGTCTAG 57.168 33.333 0.00 0.00 0.00 2.43
2637 7487 9.793259 AAAATTCCTGTCTAACATTTGTCTAGA 57.207 29.630 0.00 0.00 0.00 2.43
2638 7488 9.965902 AAATTCCTGTCTAACATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
2642 7492 8.696374 TCCTGTCTAACATTTGTCTAGATAAGG 58.304 37.037 1.97 16.35 33.34 2.69
2643 7493 8.696374 CCTGTCTAACATTTGTCTAGATAAGGA 58.304 37.037 1.97 0.00 33.52 3.36
2666 7516 9.601217 AGGATGTATCTAACACTAAAACATGAC 57.399 33.333 0.00 0.00 42.09 3.06
2667 7517 9.601217 GGATGTATCTAACACTAAAACATGACT 57.399 33.333 0.00 0.00 42.09 3.41
2669 7519 8.251750 TGTATCTAACACTAAAACATGACTGC 57.748 34.615 0.00 0.00 31.43 4.40
2670 7520 7.875554 TGTATCTAACACTAAAACATGACTGCA 59.124 33.333 0.00 0.00 31.43 4.41
2671 7521 7.928307 ATCTAACACTAAAACATGACTGCAT 57.072 32.000 0.00 0.00 34.29 3.96
2673 7523 8.251750 TCTAACACTAAAACATGACTGCATAC 57.748 34.615 0.00 0.00 32.27 2.39
2674 7524 6.875948 AACACTAAAACATGACTGCATACA 57.124 33.333 0.00 0.00 32.27 2.29
2675 7525 7.452880 AACACTAAAACATGACTGCATACAT 57.547 32.000 0.00 0.00 32.27 2.29
2676 7526 7.076842 ACACTAAAACATGACTGCATACATC 57.923 36.000 0.00 0.00 32.27 3.06
2677 7527 6.094048 ACACTAAAACATGACTGCATACATCC 59.906 38.462 0.00 0.00 32.27 3.51
2678 7528 6.093909 CACTAAAACATGACTGCATACATCCA 59.906 38.462 0.00 0.00 32.27 3.41
2679 7529 6.830324 ACTAAAACATGACTGCATACATCCAT 59.170 34.615 0.00 0.00 32.27 3.41
2680 7530 7.992608 ACTAAAACATGACTGCATACATCCATA 59.007 33.333 0.00 0.00 32.27 2.74
2681 7531 7.828508 AAAACATGACTGCATACATCCATAT 57.171 32.000 0.00 0.00 32.27 1.78
2682 7532 7.828508 AAACATGACTGCATACATCCATATT 57.171 32.000 0.00 0.00 32.27 1.28
2683 7533 7.828508 AACATGACTGCATACATCCATATTT 57.171 32.000 0.00 0.00 32.27 1.40
2684 7534 7.210718 ACATGACTGCATACATCCATATTTG 57.789 36.000 0.00 0.00 32.27 2.32
2685 7535 6.208007 ACATGACTGCATACATCCATATTTGG 59.792 38.462 0.00 0.00 37.49 3.28
2686 7536 6.431852 CATGACTGCATACATCCATATTTGGA 59.568 38.462 7.39 7.39 43.88 3.53
2687 7537 6.432162 ATGACTGCATACATCCATATTTGGAC 59.568 38.462 7.08 0.00 43.26 4.02
2688 7538 7.909929 ATGACTGCATACATCCATATTTGGACA 60.910 37.037 7.08 0.00 43.26 4.02
2702 7552 9.177608 CCATATTTGGACAAATCTAAGACAAGA 57.822 33.333 13.07 0.00 46.92 3.02
2708 7558 9.748708 TTGGACAAATCTAAGACAAGAATTTTG 57.251 29.630 0.00 0.00 34.13 2.44
2709 7559 8.359642 TGGACAAATCTAAGACAAGAATTTTGG 58.640 33.333 0.00 0.00 33.04 3.28
2710 7560 7.814587 GGACAAATCTAAGACAAGAATTTTGGG 59.185 37.037 0.00 0.00 33.04 4.12
2711 7561 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2712 7562 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2713 7563 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2714 7564 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2715 7565 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2716 7566 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2717 7567 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2718 7568 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2719 7569 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2720 7570 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2721 7571 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
2722 7572 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2723 7573 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
2724 7574 1.961133 TTTGGGACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
2725 7575 2.852714 TTGGGACGGAGGGAGTATTA 57.147 50.000 0.00 0.00 0.00 0.98
2804 7660 9.199982 CTGTTTATTGAATTGAAGAAGTGCATT 57.800 29.630 0.00 0.00 0.00 3.56
2850 7706 5.121380 ACAGAGATTACCCGGTAGTCTTA 57.879 43.478 20.38 0.00 35.71 2.10
2853 7709 6.264970 ACAGAGATTACCCGGTAGTCTTATTC 59.735 42.308 20.38 10.32 35.71 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
349 364 6.037172 CGGTTCCAGTAGAAAAATACATCAGG 59.963 42.308 0.00 0.00 35.85 3.86
351 366 6.703319 TCGGTTCCAGTAGAAAAATACATCA 58.297 36.000 0.00 0.00 35.85 3.07
432 458 4.097892 CCAGCACAAACAAACTTAGGTTCT 59.902 41.667 0.00 0.00 34.14 3.01
465 493 2.574322 CGGTCAGTTGAAGCAAAATCG 58.426 47.619 0.00 0.00 0.00 3.34
500 544 3.582780 GAAGCAGCAAAAATCTTCCAGG 58.417 45.455 0.00 0.00 31.33 4.45
731 854 2.431942 GGTCGCCGTCGTCATTGT 60.432 61.111 0.00 0.00 36.96 2.71
802 959 1.350351 GCCTCCATGGATGAGCTATGT 59.650 52.381 20.12 0.00 38.35 2.29
861 1026 5.697178 CCGTACGATTCTCTCTCATCTTCTA 59.303 44.000 18.76 0.00 0.00 2.10
902 1067 1.509463 GTCGTACCAGCATCGTCCA 59.491 57.895 0.00 0.00 0.00 4.02
922 1087 1.002502 GCCGGCCCAACTTTAGACT 60.003 57.895 18.11 0.00 0.00 3.24
924 1089 2.046700 CGCCGGCCCAACTTTAGA 60.047 61.111 23.46 0.00 0.00 2.10
949 1114 3.191888 AGATATGGGGCACTACTAGGG 57.808 52.381 0.00 0.00 0.00 3.53
963 1128 5.048364 GCTAGGCCTGGACGATATAGATATG 60.048 48.000 22.15 0.00 0.00 1.78
969 1134 1.848652 GGCTAGGCCTGGACGATATA 58.151 55.000 22.15 0.00 46.69 0.86
970 1135 2.672414 GGCTAGGCCTGGACGATAT 58.328 57.895 22.15 0.00 46.69 1.63
971 1136 4.192950 GGCTAGGCCTGGACGATA 57.807 61.111 22.15 0.00 46.69 2.92
982 1147 1.003580 TCTCAAACAAGCTGGGCTAGG 59.996 52.381 0.00 0.00 38.25 3.02
1019 1184 0.737219 GCATTTGGGCTGAGCTAGTG 59.263 55.000 3.72 0.00 0.00 2.74
1038 1211 1.536284 GGTAGGTCTTTCTCGCGGATG 60.536 57.143 6.13 0.00 0.00 3.51
1067 1240 1.751927 GGCGGAAGGAGGAGTCGTA 60.752 63.158 0.00 0.00 0.00 3.43
1068 1241 3.069318 GGCGGAAGGAGGAGTCGT 61.069 66.667 0.00 0.00 0.00 4.34
1070 1243 4.516195 GCGGCGGAAGGAGGAGTC 62.516 72.222 9.78 0.00 0.00 3.36
1096 1269 0.182775 GGGAACTGTGGACTGTGGTT 59.817 55.000 0.00 0.00 0.00 3.67
1111 1284 2.522367 GGAACCGTGGTGGAGGGAA 61.522 63.158 0.00 0.00 42.00 3.97
1126 1299 4.020617 CGGCTGGGTGCTCTGGAA 62.021 66.667 0.00 0.00 42.39 3.53
1179 1352 2.286425 CCATGGTGGGGAGGAGGT 60.286 66.667 2.57 0.00 32.67 3.85
1385 1570 2.888212 AGGGGATGATGTCTAGAGAGC 58.112 52.381 0.00 0.00 0.00 4.09
1389 1574 3.223435 GTCGAAGGGGATGATGTCTAGA 58.777 50.000 0.00 0.00 0.00 2.43
1432 1618 2.997897 GGACTGGAGCTGGTCGGT 60.998 66.667 0.00 2.55 33.70 4.69
1536 2648 0.392461 GAGTTGCCGGGTTGCAGATA 60.392 55.000 2.18 0.00 43.21 1.98
1572 2686 3.498774 ATGAAGTCAGAAAGCAGTGGT 57.501 42.857 0.00 0.00 0.00 4.16
1707 4675 1.663379 CGGGGCAGTCTATGTCGACA 61.663 60.000 22.48 22.48 36.38 4.35
1710 4678 0.319040 CATCGGGGCAGTCTATGTCG 60.319 60.000 0.00 0.00 32.79 4.35
1803 6590 7.482474 CAGTGGTGTTGAATGCAATTATCATA 58.518 34.615 0.00 0.00 36.07 2.15
1840 6627 1.079612 CTGGAGCACGCATCTGACA 60.080 57.895 0.00 0.00 0.00 3.58
1893 6680 0.911769 TGGACATTCCGAGCATTCCT 59.088 50.000 0.00 0.00 40.17 3.36
2036 6835 2.445085 AGACGACCACCACCCACA 60.445 61.111 0.00 0.00 0.00 4.17
2125 6924 1.176527 CGATGGAAACTGGCAACCAT 58.823 50.000 12.59 12.59 44.40 3.55
2157 6956 1.101635 TGAGCCGATGTCGAGTAGGG 61.102 60.000 3.62 0.00 43.02 3.53
2209 7008 4.884668 TCACAAGGTAACCTTCTAGTGG 57.115 45.455 0.00 3.59 42.67 4.00
2224 7023 3.633986 AGGAAAGGCAAAGAGTTCACAAG 59.366 43.478 0.00 0.00 0.00 3.16
2282 7081 9.146984 CAGATGAAATGCTAATGTTCACAAAAT 57.853 29.630 0.00 0.00 34.28 1.82
2283 7082 8.358895 TCAGATGAAATGCTAATGTTCACAAAA 58.641 29.630 0.00 0.00 34.28 2.44
2284 7083 7.884257 TCAGATGAAATGCTAATGTTCACAAA 58.116 30.769 0.00 0.00 34.28 2.83
2285 7084 7.362315 CCTCAGATGAAATGCTAATGTTCACAA 60.362 37.037 0.00 0.00 34.28 3.33
2393 7215 0.823460 AGAGAAGCTAGCAGGCTCAC 59.177 55.000 24.16 12.29 42.24 3.51
2411 7233 8.783093 TGGTCAGAACTTATTGTAAATCAACAG 58.217 33.333 0.00 0.00 38.97 3.16
2419 7241 7.224297 AGCTTCTTGGTCAGAACTTATTGTAA 58.776 34.615 0.00 0.00 36.51 2.41
2422 7244 6.566197 AAGCTTCTTGGTCAGAACTTATTG 57.434 37.500 0.00 0.00 36.51 1.90
2425 7247 5.680619 TCAAAGCTTCTTGGTCAGAACTTA 58.319 37.500 0.00 0.00 36.51 2.24
2435 7257 5.796935 CGATGTAACAATCAAAGCTTCTTGG 59.203 40.000 16.25 3.42 0.00 3.61
2458 7280 4.396166 AGACCAAAAGGATATTCAGCAACG 59.604 41.667 0.00 0.00 0.00 4.10
2567 7416 7.114754 AGAAAGATAGCATGGTCATTCTTCAA 58.885 34.615 0.00 0.00 30.71 2.69
2579 7429 5.882557 AGGGTGTACAAAGAAAGATAGCATG 59.117 40.000 0.00 0.00 0.00 4.06
2587 7437 3.064931 GACGGAGGGTGTACAAAGAAAG 58.935 50.000 0.00 0.00 0.00 2.62
2598 7448 1.173913 GAATTTTGGGACGGAGGGTG 58.826 55.000 0.00 0.00 0.00 4.61
2599 7449 0.039180 GGAATTTTGGGACGGAGGGT 59.961 55.000 0.00 0.00 0.00 4.34
2600 7450 0.331616 AGGAATTTTGGGACGGAGGG 59.668 55.000 0.00 0.00 0.00 4.30
2601 7451 1.271926 ACAGGAATTTTGGGACGGAGG 60.272 52.381 0.00 0.00 0.00 4.30
2602 7452 2.084546 GACAGGAATTTTGGGACGGAG 58.915 52.381 0.00 0.00 0.00 4.63
2603 7453 1.702957 AGACAGGAATTTTGGGACGGA 59.297 47.619 0.00 0.00 0.00 4.69
2604 7454 2.200373 AGACAGGAATTTTGGGACGG 57.800 50.000 0.00 0.00 0.00 4.79
2605 7455 4.069304 TGTTAGACAGGAATTTTGGGACG 58.931 43.478 0.00 0.00 0.00 4.79
2606 7456 6.590234 AATGTTAGACAGGAATTTTGGGAC 57.410 37.500 0.00 0.00 0.00 4.46
2607 7457 6.553100 ACAAATGTTAGACAGGAATTTTGGGA 59.447 34.615 8.21 0.00 0.00 4.37
2608 7458 6.758254 ACAAATGTTAGACAGGAATTTTGGG 58.242 36.000 8.21 0.00 0.00 4.12
2609 7459 7.661040 AGACAAATGTTAGACAGGAATTTTGG 58.339 34.615 8.21 0.00 0.00 3.28
2610 7460 9.831737 CTAGACAAATGTTAGACAGGAATTTTG 57.168 33.333 0.00 0.00 0.00 2.44
2611 7461 9.793259 TCTAGACAAATGTTAGACAGGAATTTT 57.207 29.630 0.00 0.00 0.00 1.82
2612 7462 9.965902 ATCTAGACAAATGTTAGACAGGAATTT 57.034 29.630 0.00 0.00 0.00 1.82
2616 7466 8.696374 CCTTATCTAGACAAATGTTAGACAGGA 58.304 37.037 16.36 0.00 33.19 3.86
2617 7467 8.696374 TCCTTATCTAGACAAATGTTAGACAGG 58.304 37.037 0.00 15.86 32.94 4.00
2640 7490 9.601217 GTCATGTTTTAGTGTTAGATACATCCT 57.399 33.333 0.00 0.00 39.39 3.24
2641 7491 9.601217 AGTCATGTTTTAGTGTTAGATACATCC 57.399 33.333 0.00 0.00 39.39 3.51
2643 7493 8.883731 GCAGTCATGTTTTAGTGTTAGATACAT 58.116 33.333 0.00 0.00 39.39 2.29
2644 7494 7.875554 TGCAGTCATGTTTTAGTGTTAGATACA 59.124 33.333 0.00 0.00 0.00 2.29
2645 7495 8.251750 TGCAGTCATGTTTTAGTGTTAGATAC 57.748 34.615 0.00 0.00 0.00 2.24
2647 7497 7.928307 ATGCAGTCATGTTTTAGTGTTAGAT 57.072 32.000 0.00 0.00 0.00 1.98
2648 7498 7.875554 TGTATGCAGTCATGTTTTAGTGTTAGA 59.124 33.333 0.00 0.00 34.22 2.10
2649 7499 8.028540 TGTATGCAGTCATGTTTTAGTGTTAG 57.971 34.615 0.00 0.00 34.22 2.34
2650 7500 7.971183 TGTATGCAGTCATGTTTTAGTGTTA 57.029 32.000 0.00 0.00 34.22 2.41
2651 7501 6.875948 TGTATGCAGTCATGTTTTAGTGTT 57.124 33.333 0.00 0.00 34.22 3.32
2652 7502 6.094048 GGATGTATGCAGTCATGTTTTAGTGT 59.906 38.462 10.45 0.00 34.22 3.55
2653 7503 6.093909 TGGATGTATGCAGTCATGTTTTAGTG 59.906 38.462 10.45 0.00 34.22 2.74
2654 7504 6.179756 TGGATGTATGCAGTCATGTTTTAGT 58.820 36.000 10.45 0.00 34.22 2.24
2655 7505 6.682423 TGGATGTATGCAGTCATGTTTTAG 57.318 37.500 10.45 0.00 34.22 1.85
2656 7506 8.922931 ATATGGATGTATGCAGTCATGTTTTA 57.077 30.769 10.45 0.42 34.22 1.52
2657 7507 7.828508 ATATGGATGTATGCAGTCATGTTTT 57.171 32.000 10.45 0.00 34.22 2.43
2658 7508 7.828508 AATATGGATGTATGCAGTCATGTTT 57.171 32.000 10.45 3.98 34.22 2.83
2659 7509 7.654568 CAAATATGGATGTATGCAGTCATGTT 58.345 34.615 10.45 8.00 34.22 2.71
2660 7510 7.210718 CAAATATGGATGTATGCAGTCATGT 57.789 36.000 10.45 3.35 34.22 3.21
2682 7532 9.748708 CAAAATTCTTGTCTTAGATTTGTCCAA 57.251 29.630 0.00 0.00 0.00 3.53
2683 7533 8.359642 CCAAAATTCTTGTCTTAGATTTGTCCA 58.640 33.333 0.00 0.00 28.79 4.02
2684 7534 7.814587 CCCAAAATTCTTGTCTTAGATTTGTCC 59.185 37.037 0.00 0.00 28.79 4.02
2685 7535 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2686 7536 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2687 7537 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2688 7538 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2689 7539 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2690 7540 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2691 7541 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2692 7542 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2693 7543 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2694 7544 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2695 7545 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2696 7546 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2697 7547 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2698 7548 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2699 7549 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2700 7550 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2701 7551 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2702 7552 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2703 7553 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2704 7554 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2705 7555 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2706 7556 2.852714 TAATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
2707 7557 4.687262 ATATAATACTCCCTCCGTCCCA 57.313 45.455 0.00 0.00 0.00 4.37
2708 7558 5.593502 CACTATATAATACTCCCTCCGTCCC 59.406 48.000 0.00 0.00 0.00 4.46
2709 7559 5.593502 CCACTATATAATACTCCCTCCGTCC 59.406 48.000 0.00 0.00 0.00 4.79
2710 7560 6.186234 ACCACTATATAATACTCCCTCCGTC 58.814 44.000 0.00 0.00 0.00 4.79
2711 7561 6.150034 ACCACTATATAATACTCCCTCCGT 57.850 41.667 0.00 0.00 0.00 4.69
2712 7562 7.477945 AAACCACTATATAATACTCCCTCCG 57.522 40.000 0.00 0.00 0.00 4.63
2798 7653 4.965119 ACCTCGATAAAAGGAAATGCAC 57.035 40.909 0.00 0.00 37.35 4.57
2804 7660 9.122779 TGTAAAAGAAAACCTCGATAAAAGGAA 57.877 29.630 0.00 0.00 37.35 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.