Multiple sequence alignment - TraesCS3A01G470000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G470000 chr3A 100.000 2366 0 0 1 2366 702265884 702263519 0.000000e+00 4370
1 TraesCS3A01G470000 chr7A 88.905 1388 129 13 2 1367 701317194 701315810 0.000000e+00 1687
2 TraesCS3A01G470000 chr1A 94.466 1012 45 6 1 1006 549075078 549076084 0.000000e+00 1548
3 TraesCS3A01G470000 chr1A 95.733 750 21 3 1618 2366 549076654 549077393 0.000000e+00 1197
4 TraesCS3A01G470000 chr1A 96.354 384 14 0 1043 1426 549076281 549076664 1.190000e-177 632
5 TraesCS3A01G470000 chr2A 92.215 745 46 5 1622 2366 748989292 748990024 0.000000e+00 1044
6 TraesCS3A01G470000 chr2A 88.148 540 39 8 826 1344 748988516 748989051 9.290000e-174 619
7 TraesCS3A01G470000 chr2A 80.110 362 56 6 8 356 26918432 26918790 3.020000e-64 255
8 TraesCS3A01G470000 chr2D 89.974 758 56 9 1618 2366 261210688 261209942 0.000000e+00 961
9 TraesCS3A01G470000 chr2D 88.712 753 69 9 1618 2366 261320829 261320089 0.000000e+00 905
10 TraesCS3A01G470000 chr2D 88.805 661 63 5 776 1429 261321471 261320815 0.000000e+00 800
11 TraesCS3A01G470000 chr2D 88.563 647 54 12 784 1429 261211301 261210674 0.000000e+00 767
12 TraesCS3A01G470000 chr2D 81.266 379 54 6 1 366 526510251 526510625 8.270000e-75 291
13 TraesCS3A01G470000 chr6B 95.755 212 6 3 1417 1626 701609919 701610129 2.910000e-89 339
14 TraesCS3A01G470000 chr1B 96.135 207 6 2 1422 1627 131456871 131456666 1.050000e-88 337
15 TraesCS3A01G470000 chr1B 96.985 199 5 1 1422 1620 562160090 562160287 1.360000e-87 333
16 TraesCS3A01G470000 chr1B 96.059 203 7 1 1425 1627 588495065 588495266 1.750000e-86 329
17 TraesCS3A01G470000 chr1B 79.948 384 60 9 1 371 168618461 168618840 1.390000e-67 267
18 TraesCS3A01G470000 chr1B 79.006 362 62 10 2 353 10555488 10555845 3.930000e-58 235
19 TraesCS3A01G470000 chr1B 83.267 251 40 2 1 250 566986318 566986069 1.830000e-56 230
20 TraesCS3A01G470000 chr7B 96.535 202 3 4 1424 1624 675850187 675849989 4.870000e-87 331
21 TraesCS3A01G470000 chr7B 96.078 204 7 1 1422 1625 744140487 744140285 4.870000e-87 331
22 TraesCS3A01G470000 chr7B 95.631 206 8 1 1422 1626 697582640 697582845 1.750000e-86 329
23 TraesCS3A01G470000 chr5A 95.169 207 10 0 1422 1628 7628493 7628287 6.310000e-86 327
24 TraesCS3A01G470000 chr5A 94.737 209 11 0 1419 1627 355848151 355848359 2.270000e-85 326
25 TraesCS3A01G470000 chr5A 81.564 358 54 2 1 346 655925507 655925864 3.850000e-73 285
26 TraesCS3A01G470000 chr5A 80.366 382 54 10 1 368 563259634 563260008 1.080000e-68 270
27 TraesCS3A01G470000 chr5D 82.967 364 45 7 1 351 446678612 446678971 1.770000e-81 313
28 TraesCS3A01G470000 chr4D 80.670 388 54 13 1 369 43051567 43051952 4.980000e-72 281
29 TraesCS3A01G470000 chrUn 81.337 359 49 6 1 346 10765361 10765008 2.320000e-70 276
30 TraesCS3A01G470000 chr3B 80.267 375 45 14 68 420 779369265 779368898 3.020000e-64 255
31 TraesCS3A01G470000 chr4A 82.812 256 38 5 1 252 670836877 670836624 8.510000e-55 224
32 TraesCS3A01G470000 chr7D 75.922 461 65 16 1 417 116602015 116602473 6.670000e-46 195
33 TraesCS3A01G470000 chr7D 91.579 95 8 0 254 348 436988319 436988225 5.310000e-27 132
34 TraesCS3A01G470000 chr3D 77.811 338 51 12 105 420 481928952 481929287 1.120000e-43 187
35 TraesCS3A01G470000 chr1D 91.765 85 5 2 268 351 446804115 446804198 1.490000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G470000 chr3A 702263519 702265884 2365 True 4370.000000 4370 100.000000 1 2366 1 chr3A.!!$R1 2365
1 TraesCS3A01G470000 chr7A 701315810 701317194 1384 True 1687.000000 1687 88.905000 2 1367 1 chr7A.!!$R1 1365
2 TraesCS3A01G470000 chr1A 549075078 549077393 2315 False 1125.666667 1548 95.517667 1 2366 3 chr1A.!!$F1 2365
3 TraesCS3A01G470000 chr2A 748988516 748990024 1508 False 831.500000 1044 90.181500 826 2366 2 chr2A.!!$F2 1540
4 TraesCS3A01G470000 chr2D 261209942 261211301 1359 True 864.000000 961 89.268500 784 2366 2 chr2D.!!$R1 1582
5 TraesCS3A01G470000 chr2D 261320089 261321471 1382 True 852.500000 905 88.758500 776 2366 2 chr2D.!!$R2 1590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 105 0.171455 GTGTGTCTCGAGCGGATCTT 59.829 55.0 7.81 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 1949 0.03213 CTAAGCATCTTAGCGCCGGA 59.968 55.0 5.05 0.0 40.15 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.552330 GCTCTCTGAAGATTGAATAAGGTTCTT 59.448 37.037 0.00 0.00 0.00 2.52
72 74 2.361119 TGTGCATCTAGTATGGTCGGTC 59.639 50.000 0.00 0.00 0.00 4.79
93 95 1.371758 CGTGTGGAGGTGTGTCTCG 60.372 63.158 0.00 0.00 34.74 4.04
103 105 0.171455 GTGTGTCTCGAGCGGATCTT 59.829 55.000 7.81 0.00 0.00 2.40
149 151 4.322934 TGTTCGTAGTTCGTATACGTTCG 58.677 43.478 23.67 19.37 44.81 3.95
169 171 2.547855 CGTGTGTCTTCAGGTTGGATCA 60.548 50.000 0.00 0.00 0.00 2.92
422 433 2.859165 TCAGAAGTTTTCCCGCAGAT 57.141 45.000 0.00 0.00 0.00 2.90
425 436 2.160417 CAGAAGTTTTCCCGCAGATGAC 59.840 50.000 0.00 0.00 0.00 3.06
439 451 5.009010 CCGCAGATGACAAATAAGCCTTAAT 59.991 40.000 0.00 0.00 0.00 1.40
442 454 8.128582 CGCAGATGACAAATAAGCCTTAATAAA 58.871 33.333 0.00 0.00 0.00 1.40
499 517 8.467402 TTTCTGTTAATTTCGCACAAAGAAAA 57.533 26.923 0.00 0.00 40.44 2.29
500 518 8.467402 TTCTGTTAATTTCGCACAAAGAAAAA 57.533 26.923 0.00 0.00 40.44 1.94
612 630 1.106285 GCGGGCATTCCAGATTTTCT 58.894 50.000 0.00 0.00 34.36 2.52
613 631 1.202336 GCGGGCATTCCAGATTTTCTG 60.202 52.381 0.00 0.00 43.91 3.02
708 726 2.122547 ACTCCCCACCACCTCGTT 60.123 61.111 0.00 0.00 0.00 3.85
1018 1050 0.250209 CATGGATGCCCTCTTCCTCG 60.250 60.000 0.00 0.00 37.41 4.63
1035 1067 3.327148 GCGATCTGCGTGCATCAT 58.673 55.556 0.00 0.00 43.41 2.45
1049 1241 5.444613 GCGTGCATCATAATATACTCGTTGG 60.445 44.000 0.00 0.00 0.00 3.77
1208 1412 1.006400 TCTCACAGGAGGCTGATGAGA 59.994 52.381 10.80 10.80 41.69 3.27
1242 1446 6.127253 ACCCATTCATTTTCCTTTAGCAGATG 60.127 38.462 0.00 0.00 0.00 2.90
1248 1452 4.365514 TTTCCTTTAGCAGATGGACACA 57.634 40.909 0.00 0.00 0.00 3.72
1320 1524 4.303993 TGTCGCTGCAGCAGAGCA 62.304 61.111 36.03 26.08 43.35 4.26
1337 1541 0.589729 GCAGCGCCATACACAATTCG 60.590 55.000 2.29 0.00 0.00 3.34
1426 1794 7.542130 GGTGGACTAAATTGCTTGACATTTAAG 59.458 37.037 0.00 0.00 0.00 1.85
1438 1806 7.754069 CTTGACATTTAAGCACTGTTTCAAA 57.246 32.000 0.00 0.00 0.00 2.69
1439 1807 8.356533 CTTGACATTTAAGCACTGTTTCAAAT 57.643 30.769 0.00 0.00 0.00 2.32
1440 1808 9.462174 CTTGACATTTAAGCACTGTTTCAAATA 57.538 29.630 0.00 0.00 0.00 1.40
1441 1809 9.462174 TTGACATTTAAGCACTGTTTCAAATAG 57.538 29.630 0.00 0.00 0.00 1.73
1442 1810 7.594758 TGACATTTAAGCACTGTTTCAAATAGC 59.405 33.333 0.00 0.00 0.00 2.97
1443 1811 6.868339 ACATTTAAGCACTGTTTCAAATAGCC 59.132 34.615 0.00 0.00 0.00 3.93
1444 1812 3.942130 AAGCACTGTTTCAAATAGCCC 57.058 42.857 0.00 0.00 0.00 5.19
1445 1813 1.812571 AGCACTGTTTCAAATAGCCCG 59.187 47.619 0.00 0.00 0.00 6.13
1446 1814 1.732405 GCACTGTTTCAAATAGCCCGC 60.732 52.381 0.00 0.00 0.00 6.13
1447 1815 1.812571 CACTGTTTCAAATAGCCCGCT 59.187 47.619 0.00 0.00 0.00 5.52
1448 1816 3.006940 CACTGTTTCAAATAGCCCGCTA 58.993 45.455 0.00 0.00 0.00 4.26
1449 1817 3.627577 CACTGTTTCAAATAGCCCGCTAT 59.372 43.478 3.31 3.31 40.63 2.97
1450 1818 4.814234 CACTGTTTCAAATAGCCCGCTATA 59.186 41.667 9.56 0.00 38.20 1.31
1451 1819 5.050091 CACTGTTTCAAATAGCCCGCTATAG 60.050 44.000 9.56 6.26 38.20 1.31
1452 1820 3.813166 TGTTTCAAATAGCCCGCTATAGC 59.187 43.478 15.09 15.09 38.20 2.97
1453 1821 4.065789 GTTTCAAATAGCCCGCTATAGCT 58.934 43.478 21.98 6.31 43.20 3.32
1454 1822 3.594603 TCAAATAGCCCGCTATAGCTC 57.405 47.619 21.98 11.04 40.56 4.09
1455 1823 2.233922 TCAAATAGCCCGCTATAGCTCC 59.766 50.000 21.98 10.06 40.56 4.70
1456 1824 0.818296 AATAGCCCGCTATAGCTCCG 59.182 55.000 21.98 10.15 40.56 4.63
1457 1825 1.668101 ATAGCCCGCTATAGCTCCGC 61.668 60.000 21.98 18.46 40.56 5.54
1458 1826 2.766306 TAGCCCGCTATAGCTCCGCT 62.766 60.000 24.41 24.41 43.41 5.52
1459 1827 2.341101 GCCCGCTATAGCTCCGCTA 61.341 63.158 21.98 0.00 45.55 4.26
1467 1835 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
1468 1836 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
1469 1837 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
1470 1838 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
1471 1839 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
1489 1857 6.889019 GCTATAGCGTTTACAGAAAGTCTT 57.111 37.500 9.40 0.00 0.00 3.01
1490 1858 6.697152 GCTATAGCGTTTACAGAAAGTCTTG 58.303 40.000 9.40 0.00 0.00 3.02
1491 1859 3.879932 AGCGTTTACAGAAAGTCTTGC 57.120 42.857 0.00 0.00 0.00 4.01
1492 1860 2.221055 AGCGTTTACAGAAAGTCTTGCG 59.779 45.455 0.00 0.00 0.00 4.85
1493 1861 2.560896 CGTTTACAGAAAGTCTTGCGC 58.439 47.619 0.00 0.00 0.00 6.09
1494 1862 2.221055 CGTTTACAGAAAGTCTTGCGCT 59.779 45.455 9.73 0.00 0.00 5.92
1495 1863 3.427528 CGTTTACAGAAAGTCTTGCGCTA 59.572 43.478 9.73 0.00 0.00 4.26
1496 1864 4.084745 CGTTTACAGAAAGTCTTGCGCTAA 60.085 41.667 9.73 0.00 0.00 3.09
1497 1865 5.374898 GTTTACAGAAAGTCTTGCGCTAAG 58.625 41.667 9.73 11.02 37.76 2.18
1498 1866 3.386768 ACAGAAAGTCTTGCGCTAAGA 57.613 42.857 9.73 13.31 43.01 2.10
1499 1867 3.321497 ACAGAAAGTCTTGCGCTAAGAG 58.679 45.455 18.44 10.73 45.71 2.85
1500 1868 3.005897 ACAGAAAGTCTTGCGCTAAGAGA 59.994 43.478 18.44 9.99 45.71 3.10
1501 1869 3.366422 CAGAAAGTCTTGCGCTAAGAGAC 59.634 47.826 18.44 18.78 45.71 3.36
1504 1872 3.669251 AGTCTTGCGCTAAGAGACTTT 57.331 42.857 21.81 8.96 45.77 2.66
1505 1873 3.321497 AGTCTTGCGCTAAGAGACTTTG 58.679 45.455 21.81 0.00 45.77 2.77
1506 1874 2.413453 GTCTTGCGCTAAGAGACTTTGG 59.587 50.000 18.44 0.00 45.71 3.28
1507 1875 2.037251 TCTTGCGCTAAGAGACTTTGGT 59.963 45.455 9.73 0.00 40.43 3.67
1508 1876 2.080286 TGCGCTAAGAGACTTTGGTC 57.920 50.000 9.73 0.00 42.41 4.02
1509 1877 1.337823 TGCGCTAAGAGACTTTGGTCC 60.338 52.381 9.73 0.00 43.05 4.46
1510 1878 1.337823 GCGCTAAGAGACTTTGGTCCA 60.338 52.381 0.00 0.00 43.05 4.02
1511 1879 2.870435 GCGCTAAGAGACTTTGGTCCAA 60.870 50.000 0.00 0.00 43.05 3.53
1512 1880 3.399330 CGCTAAGAGACTTTGGTCCAAA 58.601 45.455 16.26 16.26 43.05 3.28
1513 1881 3.186613 CGCTAAGAGACTTTGGTCCAAAC 59.813 47.826 13.26 4.96 43.05 2.93
1514 1882 4.134563 GCTAAGAGACTTTGGTCCAAACA 58.865 43.478 13.26 0.00 43.05 2.83
1515 1883 4.578928 GCTAAGAGACTTTGGTCCAAACAA 59.421 41.667 13.26 0.00 43.05 2.83
1516 1884 5.067283 GCTAAGAGACTTTGGTCCAAACAAA 59.933 40.000 13.26 0.00 43.05 2.83
1517 1885 6.239036 GCTAAGAGACTTTGGTCCAAACAAAT 60.239 38.462 13.26 0.00 43.05 2.32
1518 1886 5.520376 AGAGACTTTGGTCCAAACAAATG 57.480 39.130 13.26 6.01 43.05 2.32
1519 1887 5.200483 AGAGACTTTGGTCCAAACAAATGA 58.800 37.500 13.26 0.00 43.05 2.57
1520 1888 5.656416 AGAGACTTTGGTCCAAACAAATGAA 59.344 36.000 13.26 0.00 43.05 2.57
1521 1889 5.660460 AGACTTTGGTCCAAACAAATGAAC 58.340 37.500 13.26 4.31 43.05 3.18
1522 1890 5.186797 AGACTTTGGTCCAAACAAATGAACA 59.813 36.000 13.26 0.00 43.05 3.18
1523 1891 5.799213 ACTTTGGTCCAAACAAATGAACAA 58.201 33.333 13.26 0.00 37.22 2.83
1524 1892 6.234177 ACTTTGGTCCAAACAAATGAACAAA 58.766 32.000 13.26 0.00 41.86 2.83
1525 1893 6.148645 ACTTTGGTCCAAACAAATGAACAAAC 59.851 34.615 13.26 0.00 39.91 2.93
1526 1894 5.152623 TGGTCCAAACAAATGAACAAACA 57.847 34.783 0.00 0.00 0.00 2.83
1527 1895 5.738909 TGGTCCAAACAAATGAACAAACAT 58.261 33.333 0.00 0.00 0.00 2.71
1528 1896 6.176183 TGGTCCAAACAAATGAACAAACATT 58.824 32.000 0.00 0.00 41.43 2.71
1529 1897 6.656693 TGGTCCAAACAAATGAACAAACATTT 59.343 30.769 0.00 0.00 46.85 2.32
1530 1898 7.175641 TGGTCCAAACAAATGAACAAACATTTT 59.824 29.630 0.00 0.00 44.63 1.82
1531 1899 8.669243 GGTCCAAACAAATGAACAAACATTTTA 58.331 29.630 0.00 0.00 44.63 1.52
1539 1907 9.312146 CAAATGAACAAACATTTTAAATACCGC 57.688 29.630 0.00 0.00 44.63 5.68
1540 1908 6.677027 TGAACAAACATTTTAAATACCGCG 57.323 33.333 0.00 0.00 0.00 6.46
1541 1909 5.117287 TGAACAAACATTTTAAATACCGCGC 59.883 36.000 0.00 0.00 0.00 6.86
1542 1910 4.800784 ACAAACATTTTAAATACCGCGCT 58.199 34.783 5.56 0.00 0.00 5.92
1543 1911 5.940595 ACAAACATTTTAAATACCGCGCTA 58.059 33.333 5.56 0.00 0.00 4.26
1544 1912 6.557110 ACAAACATTTTAAATACCGCGCTAT 58.443 32.000 5.56 0.00 0.00 2.97
1545 1913 7.695820 ACAAACATTTTAAATACCGCGCTATA 58.304 30.769 5.56 0.00 0.00 1.31
1546 1914 7.853929 ACAAACATTTTAAATACCGCGCTATAG 59.146 33.333 5.56 0.00 0.00 1.31
1547 1915 5.923665 ACATTTTAAATACCGCGCTATAGC 58.076 37.500 15.09 15.09 37.78 2.97
1548 1916 5.699458 ACATTTTAAATACCGCGCTATAGCT 59.301 36.000 21.98 6.31 39.32 3.32
1549 1917 5.834239 TTTTAAATACCGCGCTATAGCTC 57.166 39.130 21.98 13.77 39.32 4.09
1550 1918 2.365408 AAATACCGCGCTATAGCTCC 57.635 50.000 21.98 11.87 39.32 4.70
1551 1919 0.170561 AATACCGCGCTATAGCTCCG 59.829 55.000 21.98 21.37 39.32 4.63
1552 1920 2.267681 ATACCGCGCTATAGCTCCGC 62.268 60.000 21.98 16.47 43.88 5.54
1553 1921 4.044484 CCGCGCTATAGCTCCGCT 62.044 66.667 21.98 0.00 45.02 5.52
1554 1922 2.687805 CCGCGCTATAGCTCCGCTA 61.688 63.158 21.98 0.00 45.55 4.26
1563 1931 1.550327 TAGCTCCGCTATAGCATGCT 58.450 50.000 25.99 25.99 42.62 3.79
1564 1932 1.550327 AGCTCCGCTATAGCATGCTA 58.450 50.000 28.72 28.72 42.62 3.49
1565 1933 2.106566 AGCTCCGCTATAGCATGCTAT 58.893 47.619 35.68 35.68 42.62 2.97
1566 1934 3.291584 AGCTCCGCTATAGCATGCTATA 58.708 45.455 34.39 34.39 42.62 1.31
1583 1951 5.681337 GCTATAGCATTTGAAAGAGGTCC 57.319 43.478 20.01 0.00 41.59 4.46
1584 1952 4.212214 GCTATAGCATTTGAAAGAGGTCCG 59.788 45.833 20.01 0.00 41.59 4.79
1585 1953 1.826385 AGCATTTGAAAGAGGTCCGG 58.174 50.000 0.00 0.00 0.00 5.14
1586 1954 0.171231 GCATTTGAAAGAGGTCCGGC 59.829 55.000 0.00 0.00 0.00 6.13
1587 1955 0.447801 CATTTGAAAGAGGTCCGGCG 59.552 55.000 0.00 0.00 0.00 6.46
1588 1956 1.305930 ATTTGAAAGAGGTCCGGCGC 61.306 55.000 0.00 0.00 0.00 6.53
1589 1957 2.391724 TTTGAAAGAGGTCCGGCGCT 62.392 55.000 7.64 0.00 0.00 5.92
1590 1958 1.537814 TTGAAAGAGGTCCGGCGCTA 61.538 55.000 7.64 0.00 0.00 4.26
1591 1959 1.217244 GAAAGAGGTCCGGCGCTAA 59.783 57.895 7.64 0.00 0.00 3.09
1592 1960 0.806492 GAAAGAGGTCCGGCGCTAAG 60.806 60.000 7.64 0.00 0.00 2.18
1593 1961 1.255667 AAAGAGGTCCGGCGCTAAGA 61.256 55.000 7.64 0.00 0.00 2.10
1594 1962 1.043673 AAGAGGTCCGGCGCTAAGAT 61.044 55.000 7.64 0.00 0.00 2.40
1595 1963 1.300233 GAGGTCCGGCGCTAAGATG 60.300 63.158 7.64 0.00 0.00 2.90
1596 1964 2.967615 GGTCCGGCGCTAAGATGC 60.968 66.667 7.64 0.00 0.00 3.91
1597 1965 2.107141 GTCCGGCGCTAAGATGCT 59.893 61.111 7.64 0.00 0.00 3.79
1598 1966 1.521681 GTCCGGCGCTAAGATGCTT 60.522 57.895 7.64 0.00 0.00 3.91
1599 1967 0.249322 GTCCGGCGCTAAGATGCTTA 60.249 55.000 7.64 0.00 0.00 3.09
1600 1968 0.032130 TCCGGCGCTAAGATGCTTAG 59.968 55.000 7.64 9.30 0.00 2.18
1601 1969 1.560860 CCGGCGCTAAGATGCTTAGC 61.561 60.000 22.75 22.75 42.82 3.09
1605 1973 1.202816 GCTAAGATGCTTAGCGCGC 59.797 57.895 26.66 26.66 43.27 6.86
1606 1974 1.218230 GCTAAGATGCTTAGCGCGCT 61.218 55.000 38.01 38.01 43.27 5.92
1607 1975 1.930817 GCTAAGATGCTTAGCGCGCTA 60.931 52.381 35.48 35.48 43.27 4.26
1608 1976 2.600731 CTAAGATGCTTAGCGCGCTAT 58.399 47.619 38.51 26.50 43.27 2.97
1609 1977 1.871080 AAGATGCTTAGCGCGCTATT 58.129 45.000 38.51 26.01 43.27 1.73
1610 1978 1.871080 AGATGCTTAGCGCGCTATTT 58.129 45.000 38.51 23.54 43.27 1.40
1611 1979 3.026630 AGATGCTTAGCGCGCTATTTA 57.973 42.857 38.51 26.65 43.27 1.40
1612 1980 3.390135 AGATGCTTAGCGCGCTATTTAA 58.610 40.909 38.51 25.53 43.27 1.52
1613 1981 3.807622 AGATGCTTAGCGCGCTATTTAAA 59.192 39.130 38.51 25.16 43.27 1.52
1614 1982 4.272504 AGATGCTTAGCGCGCTATTTAAAA 59.727 37.500 38.51 24.43 43.27 1.52
1615 1983 3.676540 TGCTTAGCGCGCTATTTAAAAC 58.323 40.909 38.51 22.00 43.27 2.43
1616 1984 3.372822 TGCTTAGCGCGCTATTTAAAACT 59.627 39.130 38.51 14.50 43.27 2.66
1617 1985 4.142773 TGCTTAGCGCGCTATTTAAAACTT 60.143 37.500 38.51 13.94 43.27 2.66
1618 1986 4.791676 GCTTAGCGCGCTATTTAAAACTTT 59.208 37.500 38.51 13.72 0.00 2.66
1619 1987 5.275280 GCTTAGCGCGCTATTTAAAACTTTG 60.275 40.000 38.51 15.49 0.00 2.77
1620 1988 2.914838 AGCGCGCTATTTAAAACTTTGC 59.085 40.909 35.79 0.00 0.00 3.68
1621 1989 2.659279 GCGCGCTATTTAAAACTTTGCA 59.341 40.909 26.67 0.00 0.00 4.08
1622 1990 3.303229 GCGCGCTATTTAAAACTTTGCAT 59.697 39.130 26.67 0.00 0.00 3.96
1623 1991 4.201580 GCGCGCTATTTAAAACTTTGCATT 60.202 37.500 26.67 0.00 0.00 3.56
1624 1992 5.667644 GCGCGCTATTTAAAACTTTGCATTT 60.668 36.000 26.67 0.00 0.00 2.32
1625 1993 6.453134 GCGCGCTATTTAAAACTTTGCATTTA 60.453 34.615 26.67 0.00 0.00 1.40
1626 1994 7.441072 CGCGCTATTTAAAACTTTGCATTTAA 58.559 30.769 5.56 0.00 31.16 1.52
1627 1995 7.626815 CGCGCTATTTAAAACTTTGCATTTAAG 59.373 33.333 5.56 0.00 33.81 1.85
1641 2009 3.688272 CATTTAAGGCAGCGAGTTGATG 58.312 45.455 0.00 0.00 36.94 3.07
1647 2015 2.771435 CAGCGAGTTGATGCCATCA 58.229 52.632 2.53 2.53 37.55 3.07
1670 2038 7.031372 TCAACGTTTGATACAGGTAGATGTAC 58.969 38.462 0.00 0.00 38.43 2.90
1671 2039 6.519679 ACGTTTGATACAGGTAGATGTACA 57.480 37.500 0.00 0.00 38.43 2.90
1672 2040 7.108841 ACGTTTGATACAGGTAGATGTACAT 57.891 36.000 8.43 8.43 38.43 2.29
1673 2041 6.978659 ACGTTTGATACAGGTAGATGTACATG 59.021 38.462 14.43 12.58 44.80 3.21
1748 2116 7.054491 TGTATACTCTCTTGAGCATTGCATA 57.946 36.000 11.91 0.00 43.85 3.14
1770 2138 3.260884 AGCAGAATCGTGGGAGAGTTTAA 59.739 43.478 0.00 0.00 0.00 1.52
1805 2173 8.788806 CATCCCCTCAATCGTACTATATCTATC 58.211 40.741 0.00 0.00 0.00 2.08
1895 2263 9.953697 CTAAGAGATACAGTTGGTCTACAATAC 57.046 37.037 0.00 0.00 41.95 1.89
1930 2298 6.164176 AGTAGGAGACCATTTTAAAGTGTCG 58.836 40.000 9.54 0.00 0.00 4.35
2120 2494 3.515502 TCGAGTTCTGTTCCATGATTCCT 59.484 43.478 0.00 0.00 0.00 3.36
2327 2701 9.667107 CCACTTAACTATTCTTCAGGTTATTGA 57.333 33.333 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.828296 GACGGGGGCTAGACGGGA 62.828 72.222 0.00 0.00 0.00 5.14
72 74 4.602259 ACACACCTCCACACGCCG 62.602 66.667 0.00 0.00 0.00 6.46
93 95 1.672881 CCACCAATGAAAGATCCGCTC 59.327 52.381 0.00 0.00 0.00 5.03
103 105 1.818060 CCGAGCAAATCCACCAATGAA 59.182 47.619 0.00 0.00 0.00 2.57
149 151 3.126001 TGATCCAACCTGAAGACACAC 57.874 47.619 0.00 0.00 0.00 3.82
169 171 6.527023 CGTTGAAGAGTAGTGTTGATCGTAAT 59.473 38.462 0.00 0.00 0.00 1.89
264 266 3.965026 CTCCCTCACCGGAGCCAGA 62.965 68.421 9.46 0.00 43.01 3.86
390 401 9.778741 GGGAAAACTTCTGATTTATTCCTTTTT 57.221 29.630 0.00 0.00 36.10 1.94
439 451 9.162764 GCAATCTAGTGAGAAACATACCTTTTA 57.837 33.333 0.00 0.00 34.61 1.52
442 454 6.711277 TGCAATCTAGTGAGAAACATACCTT 58.289 36.000 0.00 0.00 34.61 3.50
499 517 8.500753 TTATACGCATGAGTTATCCACTTTTT 57.499 30.769 7.59 0.00 35.01 1.94
500 518 8.500753 TTTATACGCATGAGTTATCCACTTTT 57.499 30.769 7.59 0.00 35.01 2.27
612 630 8.064814 CCGAAATTTTATTTTTCTTTTTCGCCA 58.935 29.630 8.82 0.00 41.31 5.69
613 631 8.277018 TCCGAAATTTTATTTTTCTTTTTCGCC 58.723 29.630 8.82 0.00 41.31 5.54
669 687 2.426023 GGACAAGACGCAGGGTGT 59.574 61.111 0.00 0.00 0.00 4.16
679 697 1.911766 GGGGAGTGACCGGACAAGA 60.912 63.158 9.46 0.00 40.11 3.02
950 982 2.703007 GAGTCGAGGGTAGAGGGTAGTA 59.297 54.545 0.00 0.00 0.00 1.82
1018 1050 0.861185 TTATGATGCACGCAGATCGC 59.139 50.000 0.00 0.23 43.23 4.58
1032 1064 5.566826 GCTCTGCCCAACGAGTATATTATGA 60.567 44.000 0.00 0.00 0.00 2.15
1034 1066 4.618460 CGCTCTGCCCAACGAGTATATTAT 60.618 45.833 0.00 0.00 0.00 1.28
1035 1067 3.305131 CGCTCTGCCCAACGAGTATATTA 60.305 47.826 0.00 0.00 0.00 0.98
1049 1241 2.035442 GTGAAGAACCCGCTCTGCC 61.035 63.158 0.00 0.00 0.00 4.85
1208 1412 5.714806 AGGAAAATGAATGGGTCGTACATTT 59.285 36.000 0.00 0.00 41.03 2.32
1320 1524 1.714899 GGCGAATTGTGTATGGCGCT 61.715 55.000 7.64 0.00 39.44 5.92
1426 1794 1.732405 GCGGGCTATTTGAAACAGTGC 60.732 52.381 0.00 0.00 0.00 4.40
1427 1795 1.812571 AGCGGGCTATTTGAAACAGTG 59.187 47.619 0.00 0.00 0.00 3.66
1428 1796 2.200373 AGCGGGCTATTTGAAACAGT 57.800 45.000 0.00 0.00 0.00 3.55
1429 1797 4.083802 GCTATAGCGGGCTATTTGAAACAG 60.084 45.833 17.49 8.76 39.65 3.16
1430 1798 3.813166 GCTATAGCGGGCTATTTGAAACA 59.187 43.478 17.49 0.00 39.65 2.83
1431 1799 4.406001 GCTATAGCGGGCTATTTGAAAC 57.594 45.455 17.49 0.05 39.65 2.78
1451 1819 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
1452 1820 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
1466 1834 6.697152 CAAGACTTTCTGTAAACGCTATAGC 58.303 40.000 15.09 15.09 37.78 2.97
1467 1835 6.506513 CGCAAGACTTTCTGTAAACGCTATAG 60.507 42.308 0.00 0.00 43.02 1.31
1468 1836 5.287752 CGCAAGACTTTCTGTAAACGCTATA 59.712 40.000 0.00 0.00 43.02 1.31
1469 1837 4.091509 CGCAAGACTTTCTGTAAACGCTAT 59.908 41.667 0.00 0.00 43.02 2.97
1470 1838 3.427528 CGCAAGACTTTCTGTAAACGCTA 59.572 43.478 0.00 0.00 43.02 4.26
1471 1839 2.221055 CGCAAGACTTTCTGTAAACGCT 59.779 45.455 0.00 0.00 43.02 5.07
1472 1840 2.560896 CGCAAGACTTTCTGTAAACGC 58.439 47.619 0.00 0.00 43.02 4.84
1473 1841 2.221055 AGCGCAAGACTTTCTGTAAACG 59.779 45.455 11.47 0.00 43.02 3.60
1474 1842 3.879932 AGCGCAAGACTTTCTGTAAAC 57.120 42.857 11.47 0.00 43.02 2.01
1475 1843 5.294356 TCTTAGCGCAAGACTTTCTGTAAA 58.706 37.500 11.47 0.00 38.39 2.01
1476 1844 4.878439 TCTTAGCGCAAGACTTTCTGTAA 58.122 39.130 11.47 0.00 38.39 2.41
1477 1845 4.217767 TCTCTTAGCGCAAGACTTTCTGTA 59.782 41.667 11.47 0.00 38.39 2.74
1478 1846 3.005897 TCTCTTAGCGCAAGACTTTCTGT 59.994 43.478 11.47 0.00 38.39 3.41
1479 1847 3.366422 GTCTCTTAGCGCAAGACTTTCTG 59.634 47.826 11.47 4.34 38.39 3.02
1480 1848 3.257127 AGTCTCTTAGCGCAAGACTTTCT 59.743 43.478 21.55 12.91 45.69 2.52
1481 1849 3.580731 AGTCTCTTAGCGCAAGACTTTC 58.419 45.455 21.55 11.53 45.69 2.62
1482 1850 3.669251 AGTCTCTTAGCGCAAGACTTT 57.331 42.857 21.55 7.99 45.69 2.66
1485 1853 2.413453 CCAAAGTCTCTTAGCGCAAGAC 59.587 50.000 11.47 16.26 38.39 3.01
1486 1854 2.037251 ACCAAAGTCTCTTAGCGCAAGA 59.963 45.455 11.47 15.40 41.10 3.02
1487 1855 2.413453 GACCAAAGTCTCTTAGCGCAAG 59.587 50.000 11.47 11.67 40.10 4.01
1488 1856 2.413837 GACCAAAGTCTCTTAGCGCAA 58.586 47.619 11.47 0.50 40.10 4.85
1489 1857 1.337823 GGACCAAAGTCTCTTAGCGCA 60.338 52.381 11.47 0.00 43.05 6.09
1490 1858 1.337823 TGGACCAAAGTCTCTTAGCGC 60.338 52.381 0.00 0.00 43.05 5.92
1491 1859 2.743636 TGGACCAAAGTCTCTTAGCG 57.256 50.000 0.00 0.00 43.05 4.26
1492 1860 4.134563 TGTTTGGACCAAAGTCTCTTAGC 58.865 43.478 20.14 5.76 43.05 3.09
1493 1861 6.693315 TTTGTTTGGACCAAAGTCTCTTAG 57.307 37.500 20.14 0.00 43.05 2.18
1494 1862 6.831353 TCATTTGTTTGGACCAAAGTCTCTTA 59.169 34.615 20.14 1.24 43.05 2.10
1495 1863 5.656416 TCATTTGTTTGGACCAAAGTCTCTT 59.344 36.000 20.14 1.05 43.05 2.85
1496 1864 5.200483 TCATTTGTTTGGACCAAAGTCTCT 58.800 37.500 20.14 1.91 43.05 3.10
1497 1865 5.514274 TCATTTGTTTGGACCAAAGTCTC 57.486 39.130 20.14 8.94 43.05 3.36
1498 1866 5.186797 TGTTCATTTGTTTGGACCAAAGTCT 59.813 36.000 20.14 2.95 43.05 3.24
1499 1867 5.415221 TGTTCATTTGTTTGGACCAAAGTC 58.585 37.500 20.14 10.01 42.73 3.01
1500 1868 5.413309 TGTTCATTTGTTTGGACCAAAGT 57.587 34.783 20.14 4.29 35.45 2.66
1501 1869 6.148480 TGTTTGTTCATTTGTTTGGACCAAAG 59.852 34.615 20.14 8.25 35.45 2.77
1502 1870 5.997746 TGTTTGTTCATTTGTTTGGACCAAA 59.002 32.000 15.89 15.89 36.34 3.28
1503 1871 5.551233 TGTTTGTTCATTTGTTTGGACCAA 58.449 33.333 1.69 1.69 0.00 3.67
1504 1872 5.152623 TGTTTGTTCATTTGTTTGGACCA 57.847 34.783 0.00 0.00 0.00 4.02
1505 1873 6.676237 AATGTTTGTTCATTTGTTTGGACC 57.324 33.333 0.00 0.00 34.86 4.46
1513 1881 9.312146 GCGGTATTTAAAATGTTTGTTCATTTG 57.688 29.630 5.61 0.00 44.10 2.32
1514 1882 8.217778 CGCGGTATTTAAAATGTTTGTTCATTT 58.782 29.630 0.00 0.00 45.94 2.32
1515 1883 7.620394 GCGCGGTATTTAAAATGTTTGTTCATT 60.620 33.333 8.83 0.00 39.35 2.57
1516 1884 6.183360 GCGCGGTATTTAAAATGTTTGTTCAT 60.183 34.615 8.83 0.00 0.00 2.57
1517 1885 5.117287 GCGCGGTATTTAAAATGTTTGTTCA 59.883 36.000 8.83 0.00 0.00 3.18
1518 1886 5.343860 AGCGCGGTATTTAAAATGTTTGTTC 59.656 36.000 10.12 0.00 0.00 3.18
1519 1887 5.224135 AGCGCGGTATTTAAAATGTTTGTT 58.776 33.333 10.12 0.00 0.00 2.83
1520 1888 4.800784 AGCGCGGTATTTAAAATGTTTGT 58.199 34.783 10.12 0.00 0.00 2.83
1521 1889 7.149192 GCTATAGCGCGGTATTTAAAATGTTTG 60.149 37.037 32.80 10.14 0.00 2.93
1522 1890 6.854381 GCTATAGCGCGGTATTTAAAATGTTT 59.146 34.615 32.80 10.20 0.00 2.83
1523 1891 6.368213 GCTATAGCGCGGTATTTAAAATGTT 58.632 36.000 32.80 10.71 0.00 2.71
1524 1892 5.923665 GCTATAGCGCGGTATTTAAAATGT 58.076 37.500 32.80 11.43 0.00 2.71
1546 1914 2.593346 ATAGCATGCTATAGCGGAGC 57.407 50.000 33.73 20.58 45.83 4.70
1561 1929 4.212214 CGGACCTCTTTCAAATGCTATAGC 59.788 45.833 18.18 18.18 42.50 2.97
1562 1930 4.752101 CCGGACCTCTTTCAAATGCTATAG 59.248 45.833 0.00 0.00 0.00 1.31
1563 1931 4.703897 CCGGACCTCTTTCAAATGCTATA 58.296 43.478 0.00 0.00 0.00 1.31
1564 1932 3.545703 CCGGACCTCTTTCAAATGCTAT 58.454 45.455 0.00 0.00 0.00 2.97
1565 1933 2.939640 GCCGGACCTCTTTCAAATGCTA 60.940 50.000 5.05 0.00 0.00 3.49
1566 1934 1.826385 CCGGACCTCTTTCAAATGCT 58.174 50.000 0.00 0.00 0.00 3.79
1567 1935 0.171231 GCCGGACCTCTTTCAAATGC 59.829 55.000 5.05 0.00 0.00 3.56
1568 1936 0.447801 CGCCGGACCTCTTTCAAATG 59.552 55.000 5.05 0.00 0.00 2.32
1569 1937 1.305930 GCGCCGGACCTCTTTCAAAT 61.306 55.000 5.05 0.00 0.00 2.32
1570 1938 1.964373 GCGCCGGACCTCTTTCAAA 60.964 57.895 5.05 0.00 0.00 2.69
1571 1939 1.537814 TAGCGCCGGACCTCTTTCAA 61.538 55.000 5.05 0.00 0.00 2.69
1572 1940 1.537814 TTAGCGCCGGACCTCTTTCA 61.538 55.000 5.05 0.00 0.00 2.69
1573 1941 0.806492 CTTAGCGCCGGACCTCTTTC 60.806 60.000 5.05 0.00 0.00 2.62
1574 1942 1.218316 CTTAGCGCCGGACCTCTTT 59.782 57.895 5.05 0.00 0.00 2.52
1575 1943 1.043673 ATCTTAGCGCCGGACCTCTT 61.044 55.000 5.05 0.00 0.00 2.85
1576 1944 1.455959 ATCTTAGCGCCGGACCTCT 60.456 57.895 5.05 0.00 0.00 3.69
1577 1945 1.300233 CATCTTAGCGCCGGACCTC 60.300 63.158 5.05 0.00 0.00 3.85
1578 1946 2.815308 CATCTTAGCGCCGGACCT 59.185 61.111 5.05 1.80 0.00 3.85
1579 1947 2.925162 AAGCATCTTAGCGCCGGACC 62.925 60.000 5.05 0.00 40.15 4.46
1580 1948 0.249322 TAAGCATCTTAGCGCCGGAC 60.249 55.000 5.05 0.00 40.15 4.79
1581 1949 0.032130 CTAAGCATCTTAGCGCCGGA 59.968 55.000 5.05 0.00 40.15 5.14
1582 1950 1.560860 GCTAAGCATCTTAGCGCCGG 61.561 60.000 18.95 0.00 38.12 6.13
1583 1951 1.856012 GCTAAGCATCTTAGCGCCG 59.144 57.895 18.95 0.00 38.12 6.46
1595 1963 3.936661 AGTTTTAAATAGCGCGCTAAGC 58.063 40.909 40.90 27.92 43.95 3.09
1596 1964 5.275280 GCAAAGTTTTAAATAGCGCGCTAAG 60.275 40.000 40.90 16.80 31.73 2.18
1597 1965 4.555747 GCAAAGTTTTAAATAGCGCGCTAA 59.444 37.500 40.90 26.03 31.73 3.09
1598 1966 4.092816 GCAAAGTTTTAAATAGCGCGCTA 58.907 39.130 39.72 39.72 0.00 4.26
1599 1967 2.914838 GCAAAGTTTTAAATAGCGCGCT 59.085 40.909 38.01 38.01 0.00 5.92
1600 1968 2.659279 TGCAAAGTTTTAAATAGCGCGC 59.341 40.909 26.66 26.66 0.00 6.86
1601 1969 5.434514 AATGCAAAGTTTTAAATAGCGCG 57.565 34.783 0.00 0.00 0.00 6.86
1602 1970 7.897800 CCTTAAATGCAAAGTTTTAAATAGCGC 59.102 33.333 0.00 0.00 29.56 5.92
1603 1971 7.897800 GCCTTAAATGCAAAGTTTTAAATAGCG 59.102 33.333 0.00 0.00 29.56 4.26
1604 1972 8.716909 TGCCTTAAATGCAAAGTTTTAAATAGC 58.283 29.630 0.00 2.14 35.40 2.97
1606 1974 8.716909 GCTGCCTTAAATGCAAAGTTTTAAATA 58.283 29.630 0.00 0.00 38.46 1.40
1607 1975 7.571059 CGCTGCCTTAAATGCAAAGTTTTAAAT 60.571 33.333 0.00 0.00 38.46 1.40
1608 1976 6.292596 CGCTGCCTTAAATGCAAAGTTTTAAA 60.293 34.615 0.00 0.00 38.46 1.52
1609 1977 5.176590 CGCTGCCTTAAATGCAAAGTTTTAA 59.823 36.000 0.00 0.00 38.46 1.52
1610 1978 4.683781 CGCTGCCTTAAATGCAAAGTTTTA 59.316 37.500 0.00 0.00 38.46 1.52
1611 1979 3.494251 CGCTGCCTTAAATGCAAAGTTTT 59.506 39.130 0.00 0.00 38.46 2.43
1612 1980 3.059166 CGCTGCCTTAAATGCAAAGTTT 58.941 40.909 0.00 0.00 38.46 2.66
1613 1981 2.295909 TCGCTGCCTTAAATGCAAAGTT 59.704 40.909 0.00 0.00 38.46 2.66
1614 1982 1.885887 TCGCTGCCTTAAATGCAAAGT 59.114 42.857 0.00 0.00 38.46 2.66
1615 1983 2.095059 ACTCGCTGCCTTAAATGCAAAG 60.095 45.455 0.00 0.00 38.46 2.77
1616 1984 1.885887 ACTCGCTGCCTTAAATGCAAA 59.114 42.857 0.00 0.00 38.46 3.68
1617 1985 1.533625 ACTCGCTGCCTTAAATGCAA 58.466 45.000 0.00 0.00 38.46 4.08
1618 1986 1.199789 CAACTCGCTGCCTTAAATGCA 59.800 47.619 0.00 0.00 37.17 3.96
1619 1987 1.468520 TCAACTCGCTGCCTTAAATGC 59.531 47.619 0.00 0.00 0.00 3.56
1620 1988 3.688272 CATCAACTCGCTGCCTTAAATG 58.312 45.455 0.00 0.00 0.00 2.32
1621 1989 2.098117 GCATCAACTCGCTGCCTTAAAT 59.902 45.455 0.00 0.00 30.22 1.40
1622 1990 1.468520 GCATCAACTCGCTGCCTTAAA 59.531 47.619 0.00 0.00 30.22 1.52
1623 1991 1.086696 GCATCAACTCGCTGCCTTAA 58.913 50.000 0.00 0.00 30.22 1.85
1624 1992 2.767536 GCATCAACTCGCTGCCTTA 58.232 52.632 0.00 0.00 30.22 2.69
1625 1993 3.583383 GCATCAACTCGCTGCCTT 58.417 55.556 0.00 0.00 30.22 4.35
1647 2015 6.927416 TGTACATCTACCTGTATCAAACGTT 58.073 36.000 0.00 0.00 34.33 3.99
1742 2110 1.209261 TCCCACGATTCTGCTATGCAA 59.791 47.619 0.00 0.00 38.41 4.08
1748 2116 1.270907 AACTCTCCCACGATTCTGCT 58.729 50.000 0.00 0.00 0.00 4.24
1770 2138 2.978156 TTGAGGGGATGCTTCAAACT 57.022 45.000 1.64 0.00 0.00 2.66
1805 2173 3.861840 ACACACCCGTGATCTTTATGAG 58.138 45.455 0.96 0.00 46.80 2.90
1881 2249 6.875076 ACATCTGGTAGTATTGTAGACCAAC 58.125 40.000 0.00 0.00 41.34 3.77
1955 2324 4.155709 TGGTGGAAAATGCAACCATTCTA 58.844 39.130 1.46 0.00 40.69 2.10
2327 2701 9.270640 GGAGTCGTGAACCGTAGATATATATAT 57.729 37.037 4.86 4.86 37.94 0.86
2328 2702 8.481314 AGGAGTCGTGAACCGTAGATATATATA 58.519 37.037 0.00 0.00 37.94 0.86
2329 2703 7.280428 CAGGAGTCGTGAACCGTAGATATATAT 59.720 40.741 7.03 0.00 37.94 0.86
2330 2704 6.592994 CAGGAGTCGTGAACCGTAGATATATA 59.407 42.308 7.03 0.00 37.94 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.