Multiple sequence alignment - TraesCS3A01G468800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G468800 chr3A 100.000 2669 0 0 1 2669 701642874 701645542 0.000000e+00 4929.0
1 TraesCS3A01G468800 chr3A 80.905 1105 178 21 583 1670 66914193 66913105 0.000000e+00 841.0
2 TraesCS3A01G468800 chr3A 78.242 1126 184 32 584 1667 701351729 701352835 0.000000e+00 665.0
3 TraesCS3A01G468800 chr3A 76.655 1118 195 38 599 1670 700443964 700442867 2.320000e-155 558.0
4 TraesCS3A01G468800 chr3A 80.812 542 96 7 2044 2580 702413541 702413003 4.110000e-113 418.0
5 TraesCS3A01G468800 chr3D 93.187 2099 122 12 579 2669 569119522 569117437 0.000000e+00 3064.0
6 TraesCS3A01G468800 chr3D 91.251 2103 142 15 575 2669 567517005 567519073 0.000000e+00 2826.0
7 TraesCS3A01G468800 chr3D 80.838 1122 178 18 575 1670 568234946 568236056 0.000000e+00 846.0
8 TraesCS3A01G468800 chr3D 80.797 1104 181 19 583 1670 58089768 58088680 0.000000e+00 835.0
9 TraesCS3A01G468800 chr3D 80.922 1085 167 18 579 1635 566954629 566955701 0.000000e+00 821.0
10 TraesCS3A01G468800 chr3D 79.428 1118 181 26 588 1670 567664757 567663654 0.000000e+00 745.0
11 TraesCS3A01G468800 chr3D 77.972 1144 195 34 568 1670 567691111 567689984 0.000000e+00 664.0
12 TraesCS3A01G468800 chr3D 83.460 526 72 10 588 1111 567485653 567486165 2.400000e-130 475.0
13 TraesCS3A01G468800 chr3D 85.938 448 59 4 1226 1671 567486231 567486676 2.400000e-130 475.0
14 TraesCS3A01G468800 chr3D 86.154 65 0 4 525 580 569119603 569119539 7.980000e-06 62.1
15 TraesCS3A01G468800 chrUn 92.559 1438 85 8 575 2006 287633326 287634747 0.000000e+00 2043.0
16 TraesCS3A01G468800 chrUn 92.559 1438 85 8 575 2006 292972688 292971267 0.000000e+00 2043.0
17 TraesCS3A01G468800 chrUn 92.685 1285 73 7 728 2006 338767959 338766690 0.000000e+00 1832.0
18 TraesCS3A01G468800 chrUn 79.853 546 103 7 2042 2585 319039493 319038953 2.490000e-105 392.0
19 TraesCS3A01G468800 chrUn 79.853 546 103 7 2042 2585 357985616 357985076 2.490000e-105 392.0
20 TraesCS3A01G468800 chrUn 82.051 156 26 2 1689 1843 299518414 299518568 6.000000e-27 132.0
21 TraesCS3A01G468800 chrUn 82.051 156 26 2 1689 1843 406080171 406080325 6.000000e-27 132.0
22 TraesCS3A01G468800 chrUn 81.410 156 27 2 1689 1843 217829524 217829678 2.790000e-25 126.0
23 TraesCS3A01G468800 chrUn 81.410 156 27 2 1689 1843 227093792 227093946 2.790000e-25 126.0
24 TraesCS3A01G468800 chr6B 79.707 1094 176 27 568 1645 685208415 685207352 0.000000e+00 749.0
25 TraesCS3A01G468800 chr6B 92.385 499 33 5 1 496 121179875 121180371 0.000000e+00 706.0
26 TraesCS3A01G468800 chr6B 91.717 495 39 2 3 495 485366783 485367277 0.000000e+00 686.0
27 TraesCS3A01G468800 chr6B 86.037 487 62 5 2089 2569 685206630 685206144 3.940000e-143 518.0
28 TraesCS3A01G468800 chr6B 85.818 275 31 4 1733 2006 685207025 685206758 4.350000e-73 285.0
29 TraesCS3A01G468800 chr4B 92.958 497 33 2 1 495 566213101 566212605 0.000000e+00 723.0
30 TraesCS3A01G468800 chr3B 93.089 492 33 1 4 494 673107758 673107267 0.000000e+00 719.0
31 TraesCS3A01G468800 chr3B 79.180 610 109 11 2042 2639 756375890 756375287 8.900000e-110 407.0
32 TraesCS3A01G468800 chr3B 80.444 496 93 3 1 495 551523836 551524328 2.510000e-100 375.0
33 TraesCS3A01G468800 chr3B 75.665 752 155 19 929 1669 684638620 684637886 1.520000e-92 350.0
34 TraesCS3A01G468800 chr6A 79.220 1102 174 31 568 1645 596777212 596776142 0.000000e+00 715.0
35 TraesCS3A01G468800 chr6A 85.626 487 64 5 2089 2569 596775597 596775111 8.530000e-140 507.0
36 TraesCS3A01G468800 chr7B 81.891 497 82 7 2066 2557 645908857 645909350 1.910000e-111 412.0
37 TraesCS3A01G468800 chr2B 80.081 492 95 2 7 497 549030858 549030369 1.950000e-96 363.0
38 TraesCS3A01G468800 chr7A 84.466 103 12 3 1871 1969 41046908 41046806 6.080000e-17 99.0
39 TraesCS3A01G468800 chr4A 85.870 92 9 3 1879 1966 648793425 648793334 7.870000e-16 95.3
40 TraesCS3A01G468800 chr7D 79.433 141 21 7 1871 2006 41599931 41599794 2.830000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G468800 chr3A 701642874 701645542 2668 False 4929.000000 4929 100.0000 1 2669 1 chr3A.!!$F2 2668
1 TraesCS3A01G468800 chr3A 66913105 66914193 1088 True 841.000000 841 80.9050 583 1670 1 chr3A.!!$R1 1087
2 TraesCS3A01G468800 chr3A 701351729 701352835 1106 False 665.000000 665 78.2420 584 1667 1 chr3A.!!$F1 1083
3 TraesCS3A01G468800 chr3A 700442867 700443964 1097 True 558.000000 558 76.6550 599 1670 1 chr3A.!!$R2 1071
4 TraesCS3A01G468800 chr3A 702413003 702413541 538 True 418.000000 418 80.8120 2044 2580 1 chr3A.!!$R3 536
5 TraesCS3A01G468800 chr3D 567517005 567519073 2068 False 2826.000000 2826 91.2510 575 2669 1 chr3D.!!$F2 2094
6 TraesCS3A01G468800 chr3D 569117437 569119603 2166 True 1563.050000 3064 89.6705 525 2669 2 chr3D.!!$R4 2144
7 TraesCS3A01G468800 chr3D 568234946 568236056 1110 False 846.000000 846 80.8380 575 1670 1 chr3D.!!$F3 1095
8 TraesCS3A01G468800 chr3D 58088680 58089768 1088 True 835.000000 835 80.7970 583 1670 1 chr3D.!!$R1 1087
9 TraesCS3A01G468800 chr3D 566954629 566955701 1072 False 821.000000 821 80.9220 579 1635 1 chr3D.!!$F1 1056
10 TraesCS3A01G468800 chr3D 567663654 567664757 1103 True 745.000000 745 79.4280 588 1670 1 chr3D.!!$R2 1082
11 TraesCS3A01G468800 chr3D 567689984 567691111 1127 True 664.000000 664 77.9720 568 1670 1 chr3D.!!$R3 1102
12 TraesCS3A01G468800 chr3D 567485653 567486676 1023 False 475.000000 475 84.6990 588 1671 2 chr3D.!!$F4 1083
13 TraesCS3A01G468800 chrUn 287633326 287634747 1421 False 2043.000000 2043 92.5590 575 2006 1 chrUn.!!$F3 1431
14 TraesCS3A01G468800 chrUn 292971267 292972688 1421 True 2043.000000 2043 92.5590 575 2006 1 chrUn.!!$R1 1431
15 TraesCS3A01G468800 chrUn 338766690 338767959 1269 True 1832.000000 1832 92.6850 728 2006 1 chrUn.!!$R3 1278
16 TraesCS3A01G468800 chrUn 319038953 319039493 540 True 392.000000 392 79.8530 2042 2585 1 chrUn.!!$R2 543
17 TraesCS3A01G468800 chrUn 357985076 357985616 540 True 392.000000 392 79.8530 2042 2585 1 chrUn.!!$R4 543
18 TraesCS3A01G468800 chr6B 685206144 685208415 2271 True 517.333333 749 83.8540 568 2569 3 chr6B.!!$R1 2001
19 TraesCS3A01G468800 chr3B 756375287 756375890 603 True 407.000000 407 79.1800 2042 2639 1 chr3B.!!$R3 597
20 TraesCS3A01G468800 chr3B 684637886 684638620 734 True 350.000000 350 75.6650 929 1669 1 chr3B.!!$R2 740
21 TraesCS3A01G468800 chr6A 596775111 596777212 2101 True 611.000000 715 82.4230 568 2569 2 chr6A.!!$R1 2001

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 274 0.042581 TGGAGGAGACCATGGCAGTA 59.957 55.0 13.04 0.0 34.77 2.74 F
478 479 0.107848 CAATAAAGTCTCGGCGGGGT 60.108 55.0 7.05 0.0 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1446 1622 2.045536 GCCTCCACTTCCCAGCAG 60.046 66.667 0.0 0.0 0.00 4.24 R
2097 2874 3.913799 TCAATAAACAGGGACCAAGAGGA 59.086 43.478 0.0 0.0 38.69 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.627611 GGGATGTGTGAAGATCAATGTG 57.372 45.455 0.00 0.00 0.00 3.21
22 23 3.379372 GGGATGTGTGAAGATCAATGTGG 59.621 47.826 0.00 0.00 0.00 4.17
23 24 4.264253 GGATGTGTGAAGATCAATGTGGA 58.736 43.478 0.00 0.00 0.00 4.02
24 25 4.885907 GGATGTGTGAAGATCAATGTGGAT 59.114 41.667 0.00 0.00 0.00 3.41
25 26 5.220989 GGATGTGTGAAGATCAATGTGGATG 60.221 44.000 0.00 0.00 0.00 3.51
26 27 3.441222 TGTGTGAAGATCAATGTGGATGC 59.559 43.478 0.00 0.00 0.00 3.91
27 28 3.693085 GTGTGAAGATCAATGTGGATGCT 59.307 43.478 0.00 0.00 0.00 3.79
28 29 3.692593 TGTGAAGATCAATGTGGATGCTG 59.307 43.478 0.00 0.00 0.00 4.41
29 30 3.066342 GTGAAGATCAATGTGGATGCTGG 59.934 47.826 0.00 0.00 0.00 4.85
30 31 3.054213 TGAAGATCAATGTGGATGCTGGA 60.054 43.478 0.00 0.00 0.00 3.86
31 32 3.210232 AGATCAATGTGGATGCTGGAG 57.790 47.619 0.00 0.00 0.00 3.86
32 33 2.508716 AGATCAATGTGGATGCTGGAGT 59.491 45.455 0.00 0.00 0.00 3.85
33 34 2.885135 TCAATGTGGATGCTGGAGTT 57.115 45.000 0.00 0.00 0.00 3.01
34 35 3.159213 TCAATGTGGATGCTGGAGTTT 57.841 42.857 0.00 0.00 0.00 2.66
35 36 3.084039 TCAATGTGGATGCTGGAGTTTC 58.916 45.455 0.00 0.00 0.00 2.78
36 37 2.821378 CAATGTGGATGCTGGAGTTTCA 59.179 45.455 0.00 0.00 0.00 2.69
37 38 2.189594 TGTGGATGCTGGAGTTTCAG 57.810 50.000 0.00 0.00 37.79 3.02
38 39 1.699083 TGTGGATGCTGGAGTTTCAGA 59.301 47.619 0.00 0.00 36.93 3.27
39 40 2.106338 TGTGGATGCTGGAGTTTCAGAA 59.894 45.455 0.00 0.00 36.93 3.02
40 41 2.746362 GTGGATGCTGGAGTTTCAGAAG 59.254 50.000 0.00 0.00 36.93 2.85
41 42 2.290514 TGGATGCTGGAGTTTCAGAAGG 60.291 50.000 0.00 0.00 36.93 3.46
42 43 2.026822 GGATGCTGGAGTTTCAGAAGGA 60.027 50.000 0.00 0.00 36.93 3.36
43 44 3.560025 GGATGCTGGAGTTTCAGAAGGAA 60.560 47.826 0.00 0.00 36.93 3.36
44 45 2.851195 TGCTGGAGTTTCAGAAGGAAC 58.149 47.619 0.00 0.00 36.93 3.62
45 46 1.801178 GCTGGAGTTTCAGAAGGAACG 59.199 52.381 0.00 0.00 36.93 3.95
46 47 2.548067 GCTGGAGTTTCAGAAGGAACGA 60.548 50.000 0.00 0.00 36.93 3.85
47 48 3.728845 CTGGAGTTTCAGAAGGAACGAA 58.271 45.455 0.00 0.00 36.93 3.85
48 49 4.319177 CTGGAGTTTCAGAAGGAACGAAT 58.681 43.478 0.00 0.00 36.93 3.34
49 50 5.477607 TGGAGTTTCAGAAGGAACGAATA 57.522 39.130 0.00 0.00 34.56 1.75
50 51 6.049955 TGGAGTTTCAGAAGGAACGAATAT 57.950 37.500 0.00 0.00 34.56 1.28
51 52 5.874810 TGGAGTTTCAGAAGGAACGAATATG 59.125 40.000 0.00 0.00 34.56 1.78
52 53 5.294552 GGAGTTTCAGAAGGAACGAATATGG 59.705 44.000 0.00 0.00 34.56 2.74
53 54 6.049955 AGTTTCAGAAGGAACGAATATGGA 57.950 37.500 0.00 0.00 34.56 3.41
54 55 6.472887 AGTTTCAGAAGGAACGAATATGGAA 58.527 36.000 0.00 0.00 34.56 3.53
55 56 6.371825 AGTTTCAGAAGGAACGAATATGGAAC 59.628 38.462 0.00 0.00 34.56 3.62
56 57 6.148811 GTTTCAGAAGGAACGAATATGGAACA 59.851 38.462 0.00 0.00 37.93 3.18
57 58 6.371548 TTTCAGAAGGAACGAATATGGAACAG 59.628 38.462 0.00 0.00 37.11 3.16
58 59 8.959499 TTTCAGAAGGAACGAATATGGAACAGC 61.959 40.741 0.00 0.00 37.11 4.40
80 81 2.995482 GCGTTATGTCGCGACAGG 59.005 61.111 40.50 29.74 45.48 4.00
81 82 2.514013 GCGTTATGTCGCGACAGGG 61.514 63.158 40.50 29.43 45.48 4.45
82 83 1.138036 CGTTATGTCGCGACAGGGA 59.862 57.895 40.50 27.58 45.48 4.20
90 91 3.692406 GCGACAGGGACGGGACTT 61.692 66.667 0.00 0.00 0.00 3.01
91 92 2.345760 GCGACAGGGACGGGACTTA 61.346 63.158 0.00 0.00 0.00 2.24
92 93 1.673808 GCGACAGGGACGGGACTTAT 61.674 60.000 0.00 0.00 0.00 1.73
93 94 0.384669 CGACAGGGACGGGACTTATC 59.615 60.000 0.00 0.00 0.00 1.75
94 95 1.777941 GACAGGGACGGGACTTATCT 58.222 55.000 0.00 0.00 0.00 1.98
95 96 1.409427 GACAGGGACGGGACTTATCTG 59.591 57.143 0.00 0.00 0.00 2.90
96 97 0.753262 CAGGGACGGGACTTATCTGG 59.247 60.000 0.00 0.00 0.00 3.86
97 98 0.635009 AGGGACGGGACTTATCTGGA 59.365 55.000 0.00 0.00 0.00 3.86
98 99 0.751452 GGGACGGGACTTATCTGGAC 59.249 60.000 0.00 0.00 0.00 4.02
99 100 1.688627 GGGACGGGACTTATCTGGACT 60.689 57.143 0.00 0.00 0.00 3.85
100 101 1.682323 GGACGGGACTTATCTGGACTC 59.318 57.143 0.00 0.00 0.00 3.36
101 102 1.682323 GACGGGACTTATCTGGACTCC 59.318 57.143 0.00 0.00 0.00 3.85
102 103 1.288335 ACGGGACTTATCTGGACTCCT 59.712 52.381 0.00 0.00 0.00 3.69
103 104 1.957877 CGGGACTTATCTGGACTCCTC 59.042 57.143 0.00 0.00 0.00 3.71
104 105 2.321719 GGGACTTATCTGGACTCCTCC 58.678 57.143 0.00 0.00 37.04 4.30
105 106 2.359355 GGGACTTATCTGGACTCCTCCA 60.359 54.545 0.00 0.00 45.11 3.86
106 107 3.582164 GGACTTATCTGGACTCCTCCAT 58.418 50.000 0.00 0.00 46.18 3.41
107 108 3.323403 GGACTTATCTGGACTCCTCCATG 59.677 52.174 0.00 0.00 46.18 3.66
108 109 2.703007 ACTTATCTGGACTCCTCCATGC 59.297 50.000 0.00 0.00 46.18 4.06
109 110 2.783379 TATCTGGACTCCTCCATGCT 57.217 50.000 0.00 0.00 46.18 3.79
110 111 2.783379 ATCTGGACTCCTCCATGCTA 57.217 50.000 0.00 0.00 46.18 3.49
111 112 2.079170 TCTGGACTCCTCCATGCTAG 57.921 55.000 0.00 0.00 46.18 3.42
112 113 1.289231 TCTGGACTCCTCCATGCTAGT 59.711 52.381 0.00 0.00 46.18 2.57
113 114 2.514160 TCTGGACTCCTCCATGCTAGTA 59.486 50.000 0.00 0.00 46.18 1.82
114 115 3.141083 TCTGGACTCCTCCATGCTAGTAT 59.859 47.826 0.00 0.00 46.18 2.12
115 116 3.900601 CTGGACTCCTCCATGCTAGTATT 59.099 47.826 0.00 0.00 46.18 1.89
116 117 4.298626 TGGACTCCTCCATGCTAGTATTT 58.701 43.478 0.00 0.00 42.15 1.40
117 118 4.101585 TGGACTCCTCCATGCTAGTATTTG 59.898 45.833 0.00 0.00 42.15 2.32
118 119 4.345257 GGACTCCTCCATGCTAGTATTTGA 59.655 45.833 0.00 0.00 36.42 2.69
119 120 5.163301 GGACTCCTCCATGCTAGTATTTGAA 60.163 44.000 0.00 0.00 36.42 2.69
120 121 5.923204 ACTCCTCCATGCTAGTATTTGAAG 58.077 41.667 0.00 0.00 0.00 3.02
121 122 5.163258 ACTCCTCCATGCTAGTATTTGAAGG 60.163 44.000 0.00 0.00 0.00 3.46
122 123 4.103153 TCCTCCATGCTAGTATTTGAAGGG 59.897 45.833 0.00 0.00 0.00 3.95
123 124 3.817647 CTCCATGCTAGTATTTGAAGGGC 59.182 47.826 0.00 0.00 0.00 5.19
124 125 3.459598 TCCATGCTAGTATTTGAAGGGCT 59.540 43.478 0.00 0.00 0.00 5.19
125 126 4.658435 TCCATGCTAGTATTTGAAGGGCTA 59.342 41.667 0.00 0.00 0.00 3.93
126 127 5.131977 TCCATGCTAGTATTTGAAGGGCTAA 59.868 40.000 0.00 0.00 0.00 3.09
127 128 5.239525 CCATGCTAGTATTTGAAGGGCTAAC 59.760 44.000 0.00 0.00 0.00 2.34
128 129 4.439057 TGCTAGTATTTGAAGGGCTAACG 58.561 43.478 0.00 0.00 0.00 3.18
129 130 3.808174 GCTAGTATTTGAAGGGCTAACGG 59.192 47.826 0.00 0.00 0.00 4.44
130 131 4.442472 GCTAGTATTTGAAGGGCTAACGGA 60.442 45.833 0.00 0.00 0.00 4.69
131 132 4.772886 AGTATTTGAAGGGCTAACGGAT 57.227 40.909 0.00 0.00 0.00 4.18
132 133 4.704965 AGTATTTGAAGGGCTAACGGATC 58.295 43.478 0.00 0.00 0.00 3.36
133 134 2.413310 TTTGAAGGGCTAACGGATCC 57.587 50.000 0.00 0.00 0.00 3.36
134 135 0.544697 TTGAAGGGCTAACGGATCCC 59.455 55.000 6.06 0.00 40.36 3.85
135 136 0.619255 TGAAGGGCTAACGGATCCCA 60.619 55.000 6.06 0.00 42.52 4.37
136 137 0.179054 GAAGGGCTAACGGATCCCAC 60.179 60.000 6.06 0.00 42.52 4.61
137 138 1.968050 AAGGGCTAACGGATCCCACG 61.968 60.000 6.06 0.00 42.52 4.94
138 139 2.428925 GGGCTAACGGATCCCACGA 61.429 63.158 6.06 0.00 39.82 4.35
139 140 1.227176 GGCTAACGGATCCCACGAC 60.227 63.158 6.06 0.00 34.93 4.34
140 141 1.588139 GCTAACGGATCCCACGACG 60.588 63.158 6.06 0.00 34.93 5.12
141 142 1.588139 CTAACGGATCCCACGACGC 60.588 63.158 6.06 0.00 34.93 5.19
142 143 2.001361 CTAACGGATCCCACGACGCT 62.001 60.000 6.06 0.00 34.93 5.07
143 144 2.274232 TAACGGATCCCACGACGCTG 62.274 60.000 6.06 0.00 34.93 5.18
144 145 4.873129 CGGATCCCACGACGCTGG 62.873 72.222 6.06 8.85 0.00 4.85
145 146 3.458163 GGATCCCACGACGCTGGA 61.458 66.667 15.29 12.07 32.30 3.86
146 147 2.577059 GATCCCACGACGCTGGAA 59.423 61.111 15.29 0.00 32.30 3.53
147 148 1.519455 GATCCCACGACGCTGGAAG 60.519 63.158 15.29 3.32 32.30 3.46
161 162 1.600957 CTGGAAGCAATCGCATGTAGG 59.399 52.381 0.00 0.00 42.27 3.18
162 163 0.947244 GGAAGCAATCGCATGTAGGG 59.053 55.000 0.00 0.00 42.27 3.53
163 164 1.475034 GGAAGCAATCGCATGTAGGGA 60.475 52.381 0.00 0.00 43.93 4.20
164 165 1.869767 GAAGCAATCGCATGTAGGGAG 59.130 52.381 0.00 0.00 42.97 4.30
165 166 0.107456 AGCAATCGCATGTAGGGAGG 59.893 55.000 0.00 0.00 42.97 4.30
166 167 0.886490 GCAATCGCATGTAGGGAGGG 60.886 60.000 0.00 0.00 42.97 4.30
167 168 0.886490 CAATCGCATGTAGGGAGGGC 60.886 60.000 0.00 0.00 42.97 5.19
168 169 1.344953 AATCGCATGTAGGGAGGGCA 61.345 55.000 0.00 0.00 42.97 5.36
169 170 1.130054 ATCGCATGTAGGGAGGGCAT 61.130 55.000 0.00 0.00 42.97 4.40
170 171 1.598962 CGCATGTAGGGAGGGCATG 60.599 63.158 0.00 0.00 41.89 4.06
171 172 1.228367 GCATGTAGGGAGGGCATGG 60.228 63.158 0.00 0.00 40.03 3.66
172 173 1.228367 CATGTAGGGAGGGCATGGC 60.228 63.158 11.56 11.56 37.08 4.40
173 174 1.697394 ATGTAGGGAGGGCATGGCA 60.697 57.895 22.06 0.00 0.00 4.92
174 175 1.999634 ATGTAGGGAGGGCATGGCAC 62.000 60.000 22.06 13.75 0.00 5.01
176 177 2.377810 TAGGGAGGGCATGGCACTG 61.378 63.158 22.06 0.00 45.08 3.66
177 178 4.828296 GGGAGGGCATGGCACTGG 62.828 72.222 22.06 0.00 45.08 4.00
179 180 4.437587 GAGGGCATGGCACTGGCT 62.438 66.667 22.06 8.19 45.08 4.75
180 181 4.437587 AGGGCATGGCACTGGCTC 62.438 66.667 22.06 10.42 42.58 4.70
181 182 4.437587 GGGCATGGCACTGGCTCT 62.438 66.667 22.06 0.00 41.22 4.09
182 183 3.138798 GGCATGGCACTGGCTCTG 61.139 66.667 15.47 3.17 40.87 3.35
183 184 3.138798 GCATGGCACTGGCTCTGG 61.139 66.667 3.97 0.00 40.87 3.86
184 185 2.672908 CATGGCACTGGCTCTGGA 59.327 61.111 3.97 0.00 40.87 3.86
185 186 1.748122 CATGGCACTGGCTCTGGAC 60.748 63.158 3.97 0.00 40.87 4.02
186 187 1.922369 ATGGCACTGGCTCTGGACT 60.922 57.895 3.97 0.00 40.87 3.85
187 188 1.495579 ATGGCACTGGCTCTGGACTT 61.496 55.000 3.97 0.00 40.87 3.01
188 189 1.673665 GGCACTGGCTCTGGACTTG 60.674 63.158 0.00 0.00 40.87 3.16
189 190 1.673665 GCACTGGCTCTGGACTTGG 60.674 63.158 0.00 0.00 36.96 3.61
190 191 1.002868 CACTGGCTCTGGACTTGGG 60.003 63.158 0.00 0.00 0.00 4.12
191 192 1.152030 ACTGGCTCTGGACTTGGGA 60.152 57.895 0.00 0.00 0.00 4.37
192 193 1.197430 ACTGGCTCTGGACTTGGGAG 61.197 60.000 0.00 0.00 0.00 4.30
193 194 1.152030 TGGCTCTGGACTTGGGAGT 60.152 57.895 0.00 0.00 39.32 3.85
194 195 1.298014 GGCTCTGGACTTGGGAGTG 59.702 63.158 0.00 0.00 35.88 3.51
195 196 1.194781 GGCTCTGGACTTGGGAGTGA 61.195 60.000 0.00 0.00 35.88 3.41
196 197 0.687354 GCTCTGGACTTGGGAGTGAA 59.313 55.000 0.00 0.00 35.88 3.18
197 198 1.609320 GCTCTGGACTTGGGAGTGAAC 60.609 57.143 0.00 0.00 35.88 3.18
198 199 1.002544 CTCTGGACTTGGGAGTGAACC 59.997 57.143 0.00 0.00 35.88 3.62
199 200 0.764890 CTGGACTTGGGAGTGAACCA 59.235 55.000 0.00 0.00 35.88 3.67
200 201 1.352352 CTGGACTTGGGAGTGAACCAT 59.648 52.381 0.00 0.00 37.93 3.55
201 202 1.351017 TGGACTTGGGAGTGAACCATC 59.649 52.381 0.00 0.00 37.93 3.51
202 203 1.630878 GGACTTGGGAGTGAACCATCT 59.369 52.381 0.00 0.00 37.93 2.90
203 204 2.838202 GGACTTGGGAGTGAACCATCTA 59.162 50.000 0.00 0.00 37.93 1.98
204 205 3.369576 GGACTTGGGAGTGAACCATCTAC 60.370 52.174 0.00 0.00 37.93 2.59
205 206 3.248024 ACTTGGGAGTGAACCATCTACA 58.752 45.455 0.00 0.00 37.93 2.74
206 207 3.261897 ACTTGGGAGTGAACCATCTACAG 59.738 47.826 0.00 0.00 37.93 2.74
207 208 3.184382 TGGGAGTGAACCATCTACAGA 57.816 47.619 0.00 0.00 31.83 3.41
208 209 3.724478 TGGGAGTGAACCATCTACAGAT 58.276 45.455 0.00 0.00 31.83 2.90
209 210 4.878968 TGGGAGTGAACCATCTACAGATA 58.121 43.478 0.00 0.00 32.63 1.98
210 211 4.895889 TGGGAGTGAACCATCTACAGATAG 59.104 45.833 0.00 0.00 32.63 2.08
211 212 4.262249 GGGAGTGAACCATCTACAGATAGC 60.262 50.000 0.00 0.00 32.63 2.97
212 213 4.586841 GGAGTGAACCATCTACAGATAGCT 59.413 45.833 0.00 0.00 32.63 3.32
213 214 5.069781 GGAGTGAACCATCTACAGATAGCTT 59.930 44.000 0.00 0.00 32.63 3.74
214 215 6.407525 GGAGTGAACCATCTACAGATAGCTTT 60.408 42.308 0.00 0.00 32.63 3.51
215 216 6.344500 AGTGAACCATCTACAGATAGCTTTG 58.656 40.000 0.00 0.00 32.63 2.77
216 217 5.525378 GTGAACCATCTACAGATAGCTTTGG 59.475 44.000 0.00 0.00 32.63 3.28
217 218 5.425217 TGAACCATCTACAGATAGCTTTGGA 59.575 40.000 0.00 0.00 32.63 3.53
218 219 5.283457 ACCATCTACAGATAGCTTTGGAC 57.717 43.478 0.00 0.00 32.63 4.02
219 220 4.965532 ACCATCTACAGATAGCTTTGGACT 59.034 41.667 0.00 0.00 32.63 3.85
220 221 5.163364 ACCATCTACAGATAGCTTTGGACTG 60.163 44.000 0.00 0.00 32.63 3.51
221 222 4.392921 TCTACAGATAGCTTTGGACTGC 57.607 45.455 0.00 0.00 32.67 4.40
222 223 3.769300 TCTACAGATAGCTTTGGACTGCA 59.231 43.478 0.00 0.00 32.67 4.41
223 224 3.423539 ACAGATAGCTTTGGACTGCAA 57.576 42.857 0.00 0.00 32.67 4.08
224 225 3.341823 ACAGATAGCTTTGGACTGCAAG 58.658 45.455 0.00 0.00 42.29 4.01
225 226 2.097142 CAGATAGCTTTGGACTGCAAGC 59.903 50.000 0.00 0.00 44.96 4.01
226 227 2.086869 GATAGCTTTGGACTGCAAGCA 58.913 47.619 8.43 0.00 46.70 3.91
227 228 1.527034 TAGCTTTGGACTGCAAGCAG 58.473 50.000 19.74 19.74 46.70 4.24
228 229 1.177256 AGCTTTGGACTGCAAGCAGG 61.177 55.000 24.29 8.00 46.70 4.85
229 230 3.821719 AGCTTTGGACTGCAAGCAGGT 62.822 52.381 24.29 11.18 46.70 4.00
230 231 5.893518 TAGCTTTGGACTGCAAGCAGGTT 62.894 47.826 24.29 5.96 46.70 3.50
231 232 5.893518 AGCTTTGGACTGCAAGCAGGTTA 62.894 47.826 24.29 8.37 46.70 2.85
232 233 7.787847 TAGCTTTGGACTGCAAGCAGGTTAT 62.788 44.000 24.29 4.86 46.70 1.89
233 234 7.787847 AGCTTTGGACTGCAAGCAGGTTATA 62.788 44.000 24.29 7.46 46.70 0.98
234 235 9.851874 TAGCTTTGGACTGCAAGCAGGTTATAA 62.852 40.741 24.29 11.36 46.70 0.98
253 254 8.620533 GTTATAAACCACATTCATCAAAGAGC 57.379 34.615 0.00 0.00 0.00 4.09
254 255 8.462016 GTTATAAACCACATTCATCAAAGAGCT 58.538 33.333 0.00 0.00 0.00 4.09
255 256 4.778534 AACCACATTCATCAAAGAGCTG 57.221 40.909 0.00 0.00 0.00 4.24
256 257 3.087031 ACCACATTCATCAAAGAGCTGG 58.913 45.455 0.00 0.00 0.00 4.85
257 258 3.245016 ACCACATTCATCAAAGAGCTGGA 60.245 43.478 0.00 0.00 0.00 3.86
258 259 3.377485 CCACATTCATCAAAGAGCTGGAG 59.623 47.826 0.00 0.00 0.00 3.86
259 260 3.377485 CACATTCATCAAAGAGCTGGAGG 59.623 47.826 0.00 0.00 0.00 4.30
260 261 3.265221 ACATTCATCAAAGAGCTGGAGGA 59.735 43.478 0.00 0.00 0.00 3.71
261 262 3.623906 TTCATCAAAGAGCTGGAGGAG 57.376 47.619 0.00 0.00 0.00 3.69
262 263 2.825223 TCATCAAAGAGCTGGAGGAGA 58.175 47.619 0.00 0.00 0.00 3.71
263 264 2.499289 TCATCAAAGAGCTGGAGGAGAC 59.501 50.000 0.00 0.00 0.00 3.36
264 265 1.270907 TCAAAGAGCTGGAGGAGACC 58.729 55.000 0.00 0.00 0.00 3.85
265 266 0.979665 CAAAGAGCTGGAGGAGACCA 59.020 55.000 0.00 0.00 38.33 4.02
266 267 1.558756 CAAAGAGCTGGAGGAGACCAT 59.441 52.381 0.00 0.00 39.34 3.55
267 268 1.202330 AAGAGCTGGAGGAGACCATG 58.798 55.000 0.00 0.00 39.34 3.66
268 269 0.690411 AGAGCTGGAGGAGACCATGG 60.690 60.000 11.19 11.19 39.34 3.66
269 270 2.191641 GCTGGAGGAGACCATGGC 59.808 66.667 13.04 4.70 39.34 4.40
270 271 2.673200 GCTGGAGGAGACCATGGCA 61.673 63.158 13.04 0.00 39.34 4.92
271 272 1.525923 CTGGAGGAGACCATGGCAG 59.474 63.158 13.04 5.21 39.34 4.85
272 273 1.229625 TGGAGGAGACCATGGCAGT 60.230 57.895 13.04 0.00 34.77 4.40
273 274 0.042581 TGGAGGAGACCATGGCAGTA 59.957 55.000 13.04 0.00 34.77 2.74
274 275 1.344393 TGGAGGAGACCATGGCAGTAT 60.344 52.381 13.04 0.00 34.77 2.12
275 276 1.771255 GGAGGAGACCATGGCAGTATT 59.229 52.381 13.04 0.00 0.00 1.89
276 277 2.486191 GGAGGAGACCATGGCAGTATTG 60.486 54.545 13.04 0.00 0.00 1.90
277 278 2.171448 GAGGAGACCATGGCAGTATTGT 59.829 50.000 13.04 0.00 0.00 2.71
278 279 2.171448 AGGAGACCATGGCAGTATTGTC 59.829 50.000 13.04 0.00 0.00 3.18
279 280 2.092968 GGAGACCATGGCAGTATTGTCA 60.093 50.000 13.04 0.00 44.26 3.58
280 281 3.201290 GAGACCATGGCAGTATTGTCAG 58.799 50.000 13.04 0.00 43.21 3.51
281 282 2.840038 AGACCATGGCAGTATTGTCAGA 59.160 45.455 13.04 0.00 43.21 3.27
282 283 3.118482 AGACCATGGCAGTATTGTCAGAG 60.118 47.826 13.04 0.00 43.21 3.35
283 284 2.840038 ACCATGGCAGTATTGTCAGAGA 59.160 45.455 13.04 0.00 43.21 3.10
284 285 3.264193 ACCATGGCAGTATTGTCAGAGAA 59.736 43.478 13.04 0.00 43.21 2.87
285 286 4.263462 ACCATGGCAGTATTGTCAGAGAAA 60.263 41.667 13.04 0.00 43.21 2.52
286 287 4.885907 CCATGGCAGTATTGTCAGAGAAAT 59.114 41.667 0.00 0.00 43.21 2.17
287 288 5.359009 CCATGGCAGTATTGTCAGAGAAATT 59.641 40.000 0.00 0.00 43.21 1.82
288 289 6.127535 CCATGGCAGTATTGTCAGAGAAATTT 60.128 38.462 0.00 0.00 43.21 1.82
289 290 6.899393 TGGCAGTATTGTCAGAGAAATTTT 57.101 33.333 0.00 0.00 33.05 1.82
290 291 7.994425 TGGCAGTATTGTCAGAGAAATTTTA 57.006 32.000 0.00 0.00 33.05 1.52
291 292 7.816640 TGGCAGTATTGTCAGAGAAATTTTAC 58.183 34.615 0.00 0.00 33.05 2.01
292 293 7.446931 TGGCAGTATTGTCAGAGAAATTTTACA 59.553 33.333 0.00 0.00 33.05 2.41
293 294 8.296713 GGCAGTATTGTCAGAGAAATTTTACAA 58.703 33.333 0.00 0.03 0.00 2.41
294 295 9.677567 GCAGTATTGTCAGAGAAATTTTACAAA 57.322 29.630 0.00 0.00 31.33 2.83
314 315 7.974482 ACAAACTTCTACTTTATTTACCGCT 57.026 32.000 0.00 0.00 0.00 5.52
315 316 8.387190 ACAAACTTCTACTTTATTTACCGCTT 57.613 30.769 0.00 0.00 0.00 4.68
316 317 8.287503 ACAAACTTCTACTTTATTTACCGCTTG 58.712 33.333 0.00 0.00 0.00 4.01
317 318 7.974482 AACTTCTACTTTATTTACCGCTTGT 57.026 32.000 0.00 0.00 0.00 3.16
318 319 9.492973 AAACTTCTACTTTATTTACCGCTTGTA 57.507 29.630 0.00 0.00 0.00 2.41
319 320 9.492973 AACTTCTACTTTATTTACCGCTTGTAA 57.507 29.630 0.00 0.00 37.65 2.41
320 321 9.662947 ACTTCTACTTTATTTACCGCTTGTAAT 57.337 29.630 0.00 0.00 39.14 1.89
331 332 8.928270 TTTACCGCTTGTAATTTTCTTTTTGA 57.072 26.923 0.00 0.00 39.14 2.69
332 333 8.928270 TTACCGCTTGTAATTTTCTTTTTGAA 57.072 26.923 0.00 0.00 34.50 2.69
333 334 7.229228 ACCGCTTGTAATTTTCTTTTTGAAC 57.771 32.000 0.00 0.00 33.88 3.18
334 335 6.256975 ACCGCTTGTAATTTTCTTTTTGAACC 59.743 34.615 0.00 0.00 33.88 3.62
335 336 6.478673 CCGCTTGTAATTTTCTTTTTGAACCT 59.521 34.615 0.00 0.00 33.88 3.50
336 337 7.306574 CCGCTTGTAATTTTCTTTTTGAACCTC 60.307 37.037 0.00 0.00 33.88 3.85
337 338 7.555582 GCTTGTAATTTTCTTTTTGAACCTCG 58.444 34.615 0.00 0.00 33.88 4.63
338 339 7.434013 GCTTGTAATTTTCTTTTTGAACCTCGA 59.566 33.333 0.00 0.00 33.88 4.04
339 340 8.850454 TTGTAATTTTCTTTTTGAACCTCGAG 57.150 30.769 5.13 5.13 33.88 4.04
340 341 8.215926 TGTAATTTTCTTTTTGAACCTCGAGA 57.784 30.769 15.71 0.00 33.88 4.04
341 342 8.342634 TGTAATTTTCTTTTTGAACCTCGAGAG 58.657 33.333 15.71 6.69 33.88 3.20
342 343 6.944234 ATTTTCTTTTTGAACCTCGAGAGT 57.056 33.333 15.71 7.40 33.88 3.24
343 344 5.986004 TTTCTTTTTGAACCTCGAGAGTC 57.014 39.130 15.71 11.07 33.88 3.36
344 345 4.665833 TCTTTTTGAACCTCGAGAGTCA 57.334 40.909 15.71 13.69 0.00 3.41
345 346 5.018539 TCTTTTTGAACCTCGAGAGTCAA 57.981 39.130 20.36 20.36 0.00 3.18
346 347 5.424757 TCTTTTTGAACCTCGAGAGTCAAA 58.575 37.500 26.45 26.45 38.01 2.69
347 348 5.293569 TCTTTTTGAACCTCGAGAGTCAAAC 59.706 40.000 28.44 13.62 39.14 2.93
348 349 4.402056 TTTGAACCTCGAGAGTCAAACT 57.598 40.909 26.45 7.00 35.60 2.66
349 350 5.524971 TTTGAACCTCGAGAGTCAAACTA 57.475 39.130 26.45 14.07 35.60 2.24
350 351 5.723672 TTGAACCTCGAGAGTCAAACTAT 57.276 39.130 21.38 1.51 0.00 2.12
351 352 5.060662 TGAACCTCGAGAGTCAAACTATG 57.939 43.478 15.71 0.00 0.00 2.23
352 353 4.765339 TGAACCTCGAGAGTCAAACTATGA 59.235 41.667 15.71 0.00 35.05 2.15
353 354 4.974368 ACCTCGAGAGTCAAACTATGAG 57.026 45.455 15.71 0.00 39.19 2.90
354 355 3.697045 ACCTCGAGAGTCAAACTATGAGG 59.303 47.826 15.71 15.03 38.97 3.86
355 356 3.490078 CCTCGAGAGTCAAACTATGAGGC 60.490 52.174 15.71 0.00 39.19 4.70
356 357 3.357203 TCGAGAGTCAAACTATGAGGCT 58.643 45.455 0.00 0.00 39.19 4.58
357 358 3.378742 TCGAGAGTCAAACTATGAGGCTC 59.621 47.826 7.79 7.79 39.19 4.70
358 359 3.129462 CGAGAGTCAAACTATGAGGCTCA 59.871 47.826 21.19 21.19 39.19 4.26
359 360 4.202101 CGAGAGTCAAACTATGAGGCTCAT 60.202 45.833 30.89 30.89 39.19 2.90
360 361 5.009110 CGAGAGTCAAACTATGAGGCTCATA 59.991 44.000 29.92 29.92 39.19 2.15
371 372 4.984146 TGAGGCTCATAGACTAGCTAGA 57.016 45.455 27.45 5.35 30.20 2.43
372 373 5.512942 TGAGGCTCATAGACTAGCTAGAT 57.487 43.478 27.45 16.59 30.20 1.98
373 374 5.886609 TGAGGCTCATAGACTAGCTAGATT 58.113 41.667 27.45 15.85 30.20 2.40
374 375 6.310941 TGAGGCTCATAGACTAGCTAGATTT 58.689 40.000 27.45 13.50 30.20 2.17
375 376 6.208402 TGAGGCTCATAGACTAGCTAGATTTG 59.792 42.308 27.45 17.94 30.20 2.32
376 377 5.480073 AGGCTCATAGACTAGCTAGATTTGG 59.520 44.000 27.45 12.84 38.80 3.28
377 378 5.167845 GCTCATAGACTAGCTAGATTTGGC 58.832 45.833 27.45 17.76 35.80 4.52
378 379 5.279206 GCTCATAGACTAGCTAGATTTGGCA 60.279 44.000 27.45 5.26 35.80 4.92
379 380 6.574073 GCTCATAGACTAGCTAGATTTGGCAT 60.574 42.308 27.45 1.49 35.80 4.40
380 381 7.308450 TCATAGACTAGCTAGATTTGGCATT 57.692 36.000 27.45 0.70 32.40 3.56
381 382 7.739825 TCATAGACTAGCTAGATTTGGCATTT 58.260 34.615 27.45 0.00 32.40 2.32
382 383 7.875041 TCATAGACTAGCTAGATTTGGCATTTC 59.125 37.037 27.45 9.85 32.40 2.17
383 384 5.053145 AGACTAGCTAGATTTGGCATTTCG 58.947 41.667 27.45 0.00 32.40 3.46
384 385 3.561725 ACTAGCTAGATTTGGCATTTCGC 59.438 43.478 27.45 0.00 41.28 4.70
385 386 2.648059 AGCTAGATTTGGCATTTCGCT 58.352 42.857 0.00 0.00 41.91 4.93
386 387 2.615912 AGCTAGATTTGGCATTTCGCTC 59.384 45.455 0.00 0.00 41.91 5.03
387 388 2.287248 GCTAGATTTGGCATTTCGCTCC 60.287 50.000 0.00 0.00 41.91 4.70
388 389 1.106285 AGATTTGGCATTTCGCTCCC 58.894 50.000 0.00 0.00 41.91 4.30
389 390 1.106285 GATTTGGCATTTCGCTCCCT 58.894 50.000 0.00 0.00 41.91 4.20
390 391 0.819582 ATTTGGCATTTCGCTCCCTG 59.180 50.000 0.00 0.00 41.91 4.45
391 392 1.876497 TTTGGCATTTCGCTCCCTGC 61.876 55.000 0.00 0.00 41.91 4.85
392 393 2.439156 GGCATTTCGCTCCCTGCT 60.439 61.111 0.00 0.00 41.91 4.24
393 394 2.768492 GGCATTTCGCTCCCTGCTG 61.768 63.158 0.00 0.00 41.91 4.41
394 395 2.768492 GCATTTCGCTCCCTGCTGG 61.768 63.158 1.89 1.89 40.11 4.85
395 396 1.078214 CATTTCGCTCCCTGCTGGA 60.078 57.895 11.88 3.09 42.41 3.86
396 397 0.677731 CATTTCGCTCCCTGCTGGAA 60.678 55.000 11.88 0.00 44.57 3.53
397 398 0.393537 ATTTCGCTCCCTGCTGGAAG 60.394 55.000 11.88 0.12 44.57 3.46
398 399 2.469465 TTTCGCTCCCTGCTGGAAGG 62.469 60.000 11.88 0.00 44.57 3.46
400 401 4.039092 GCTCCCTGCTGGAAGGCA 62.039 66.667 11.88 0.00 44.57 4.75
401 402 3.004951 CTCCCTGCTGGAAGGCAT 58.995 61.111 11.88 0.00 44.57 4.40
402 403 1.305623 CTCCCTGCTGGAAGGCATT 59.694 57.895 11.88 0.00 44.57 3.56
403 404 0.324091 CTCCCTGCTGGAAGGCATTT 60.324 55.000 11.88 0.00 44.57 2.32
404 405 0.612732 TCCCTGCTGGAAGGCATTTG 60.613 55.000 11.88 0.00 41.40 2.32
405 406 0.901580 CCCTGCTGGAAGGCATTTGT 60.902 55.000 11.88 0.00 41.63 2.83
406 407 0.245539 CCTGCTGGAAGGCATTTGTG 59.754 55.000 2.92 0.00 41.63 3.33
407 408 0.245539 CTGCTGGAAGGCATTTGTGG 59.754 55.000 0.00 0.00 41.63 4.17
408 409 0.469705 TGCTGGAAGGCATTTGTGGT 60.470 50.000 0.00 0.00 37.29 4.16
409 410 0.681175 GCTGGAAGGCATTTGTGGTT 59.319 50.000 0.00 0.00 0.00 3.67
410 411 1.606224 GCTGGAAGGCATTTGTGGTTG 60.606 52.381 0.00 0.00 0.00 3.77
411 412 1.001181 CTGGAAGGCATTTGTGGTTGG 59.999 52.381 0.00 0.00 0.00 3.77
412 413 0.321346 GGAAGGCATTTGTGGTTGGG 59.679 55.000 0.00 0.00 0.00 4.12
413 414 0.320683 GAAGGCATTTGTGGTTGGGC 60.321 55.000 0.00 0.00 0.00 5.36
414 415 1.053264 AAGGCATTTGTGGTTGGGCA 61.053 50.000 0.00 0.00 0.00 5.36
415 416 1.301637 GGCATTTGTGGTTGGGCAC 60.302 57.895 0.00 0.00 0.00 5.01
429 430 4.408821 GCACCCAGCATGACCCGA 62.409 66.667 0.00 0.00 44.79 5.14
430 431 2.591753 CACCCAGCATGACCCGAT 59.408 61.111 0.00 0.00 39.69 4.18
431 432 1.077501 CACCCAGCATGACCCGATT 60.078 57.895 0.00 0.00 39.69 3.34
432 433 1.077501 ACCCAGCATGACCCGATTG 60.078 57.895 0.00 0.00 39.69 2.67
433 434 1.077501 CCCAGCATGACCCGATTGT 60.078 57.895 0.00 0.00 39.69 2.71
434 435 0.180171 CCCAGCATGACCCGATTGTA 59.820 55.000 0.00 0.00 39.69 2.41
435 436 1.408127 CCCAGCATGACCCGATTGTAA 60.408 52.381 0.00 0.00 39.69 2.41
436 437 2.575532 CCAGCATGACCCGATTGTAAT 58.424 47.619 0.00 0.00 39.69 1.89
437 438 2.549754 CCAGCATGACCCGATTGTAATC 59.450 50.000 0.00 0.00 39.69 1.75
438 439 2.549754 CAGCATGACCCGATTGTAATCC 59.450 50.000 0.00 0.00 39.69 3.01
439 440 1.880027 GCATGACCCGATTGTAATCCC 59.120 52.381 0.00 0.00 31.68 3.85
440 441 2.487265 GCATGACCCGATTGTAATCCCT 60.487 50.000 0.00 0.00 31.68 4.20
441 442 3.244422 GCATGACCCGATTGTAATCCCTA 60.244 47.826 0.00 0.00 31.68 3.53
442 443 4.565652 GCATGACCCGATTGTAATCCCTAT 60.566 45.833 0.00 0.00 31.68 2.57
443 444 4.617253 TGACCCGATTGTAATCCCTATG 57.383 45.455 0.00 0.00 31.68 2.23
444 445 4.228010 TGACCCGATTGTAATCCCTATGA 58.772 43.478 0.00 0.00 31.68 2.15
445 446 4.656575 TGACCCGATTGTAATCCCTATGAA 59.343 41.667 0.00 0.00 31.68 2.57
446 447 4.969484 ACCCGATTGTAATCCCTATGAAC 58.031 43.478 0.00 0.00 31.68 3.18
447 448 4.410883 ACCCGATTGTAATCCCTATGAACA 59.589 41.667 0.00 0.00 31.68 3.18
448 449 5.073144 ACCCGATTGTAATCCCTATGAACAT 59.927 40.000 0.00 0.00 31.68 2.71
449 450 5.643777 CCCGATTGTAATCCCTATGAACATC 59.356 44.000 0.00 0.00 31.68 3.06
450 451 6.467677 CCGATTGTAATCCCTATGAACATCT 58.532 40.000 0.00 0.00 31.68 2.90
451 452 6.936900 CCGATTGTAATCCCTATGAACATCTT 59.063 38.462 0.00 0.00 31.68 2.40
452 453 8.094548 CCGATTGTAATCCCTATGAACATCTTA 58.905 37.037 0.00 0.00 31.68 2.10
453 454 9.144747 CGATTGTAATCCCTATGAACATCTTAG 57.855 37.037 0.00 0.00 31.68 2.18
454 455 8.854614 ATTGTAATCCCTATGAACATCTTAGC 57.145 34.615 0.00 0.00 0.00 3.09
455 456 6.769512 TGTAATCCCTATGAACATCTTAGCC 58.230 40.000 0.00 0.00 0.00 3.93
456 457 4.543590 ATCCCTATGAACATCTTAGCCG 57.456 45.455 0.00 0.00 0.00 5.52
457 458 3.572642 TCCCTATGAACATCTTAGCCGA 58.427 45.455 0.00 0.00 0.00 5.54
458 459 4.160329 TCCCTATGAACATCTTAGCCGAT 58.840 43.478 0.00 0.00 0.00 4.18
459 460 4.220821 TCCCTATGAACATCTTAGCCGATC 59.779 45.833 0.00 0.00 0.00 3.69
460 461 4.021104 CCCTATGAACATCTTAGCCGATCA 60.021 45.833 0.00 0.00 0.00 2.92
461 462 5.511373 CCCTATGAACATCTTAGCCGATCAA 60.511 44.000 0.00 0.00 0.00 2.57
462 463 6.169094 CCTATGAACATCTTAGCCGATCAAT 58.831 40.000 0.00 0.00 0.00 2.57
463 464 7.323420 CCTATGAACATCTTAGCCGATCAATA 58.677 38.462 0.00 0.00 0.00 1.90
464 465 7.819415 CCTATGAACATCTTAGCCGATCAATAA 59.181 37.037 0.00 0.00 0.00 1.40
465 466 9.208022 CTATGAACATCTTAGCCGATCAATAAA 57.792 33.333 0.00 0.00 0.00 1.40
466 467 7.482654 TGAACATCTTAGCCGATCAATAAAG 57.517 36.000 0.00 0.00 0.00 1.85
467 468 7.047891 TGAACATCTTAGCCGATCAATAAAGT 58.952 34.615 0.00 0.00 0.00 2.66
468 469 7.224753 TGAACATCTTAGCCGATCAATAAAGTC 59.775 37.037 0.00 0.00 0.00 3.01
469 470 6.821388 ACATCTTAGCCGATCAATAAAGTCT 58.179 36.000 0.00 0.00 0.00 3.24
470 471 6.926272 ACATCTTAGCCGATCAATAAAGTCTC 59.074 38.462 0.00 0.00 0.00 3.36
471 472 5.520632 TCTTAGCCGATCAATAAAGTCTCG 58.479 41.667 0.00 0.00 0.00 4.04
474 475 1.787155 CCGATCAATAAAGTCTCGGCG 59.213 52.381 0.00 0.00 41.95 6.46
475 476 1.787155 CGATCAATAAAGTCTCGGCGG 59.213 52.381 7.21 0.00 0.00 6.13
476 477 2.135933 GATCAATAAAGTCTCGGCGGG 58.864 52.381 7.21 2.41 0.00 6.13
477 478 0.177141 TCAATAAAGTCTCGGCGGGG 59.823 55.000 7.05 0.00 0.00 5.73
478 479 0.107848 CAATAAAGTCTCGGCGGGGT 60.108 55.000 7.05 0.00 0.00 4.95
479 480 0.616891 AATAAAGTCTCGGCGGGGTT 59.383 50.000 7.05 1.33 0.00 4.11
480 481 0.616891 ATAAAGTCTCGGCGGGGTTT 59.383 50.000 7.05 10.08 0.00 3.27
481 482 0.397564 TAAAGTCTCGGCGGGGTTTT 59.602 50.000 7.05 10.65 0.00 2.43
482 483 1.170290 AAAGTCTCGGCGGGGTTTTG 61.170 55.000 7.05 0.00 0.00 2.44
483 484 2.281276 GTCTCGGCGGGGTTTTGT 60.281 61.111 7.05 0.00 0.00 2.83
484 485 2.031465 TCTCGGCGGGGTTTTGTC 59.969 61.111 7.05 0.00 0.00 3.18
485 486 2.032071 CTCGGCGGGGTTTTGTCT 59.968 61.111 7.21 0.00 0.00 3.41
486 487 2.031465 TCGGCGGGGTTTTGTCTC 59.969 61.111 7.21 0.00 0.00 3.36
487 488 2.281208 CGGCGGGGTTTTGTCTCA 60.281 61.111 0.00 0.00 0.00 3.27
488 489 1.894756 CGGCGGGGTTTTGTCTCAA 60.895 57.895 0.00 0.00 0.00 3.02
489 490 1.448922 CGGCGGGGTTTTGTCTCAAA 61.449 55.000 0.00 0.00 0.00 2.69
490 491 0.747852 GGCGGGGTTTTGTCTCAAAA 59.252 50.000 3.93 3.93 0.00 2.44
491 492 1.137282 GGCGGGGTTTTGTCTCAAAAA 59.863 47.619 8.83 0.00 0.00 1.94
514 515 4.984146 AAAGGAAGTATGCCCTAGATCC 57.016 45.455 0.00 0.00 28.30 3.36
515 516 3.637821 AGGAAGTATGCCCTAGATCCA 57.362 47.619 0.00 0.00 28.30 3.41
516 517 3.243724 AGGAAGTATGCCCTAGATCCAC 58.756 50.000 0.00 0.00 28.30 4.02
517 518 3.116551 AGGAAGTATGCCCTAGATCCACT 60.117 47.826 0.00 0.00 28.30 4.00
518 519 3.259625 GGAAGTATGCCCTAGATCCACTC 59.740 52.174 0.00 0.00 0.00 3.51
519 520 2.896039 AGTATGCCCTAGATCCACTCC 58.104 52.381 0.00 0.00 0.00 3.85
520 521 2.180086 AGTATGCCCTAGATCCACTCCA 59.820 50.000 0.00 0.00 0.00 3.86
521 522 2.196742 ATGCCCTAGATCCACTCCAA 57.803 50.000 0.00 0.00 0.00 3.53
522 523 1.204146 TGCCCTAGATCCACTCCAAC 58.796 55.000 0.00 0.00 0.00 3.77
523 524 0.470341 GCCCTAGATCCACTCCAACC 59.530 60.000 0.00 0.00 0.00 3.77
552 553 1.435515 CTCTACCACTGCTCTCGCC 59.564 63.158 0.00 0.00 34.43 5.54
553 554 1.000771 TCTACCACTGCTCTCGCCT 60.001 57.895 0.00 0.00 34.43 5.52
554 555 0.612174 TCTACCACTGCTCTCGCCTT 60.612 55.000 0.00 0.00 34.43 4.35
555 556 0.459237 CTACCACTGCTCTCGCCTTG 60.459 60.000 0.00 0.00 34.43 3.61
560 570 4.441695 TGCTCTCGCCTTGCTCCG 62.442 66.667 0.00 0.00 34.43 4.63
614 642 1.213619 TGGCCTCCCCAATGACATCA 61.214 55.000 3.32 0.00 41.82 3.07
631 659 1.798626 TCACCATCTGGGAGATCCTG 58.201 55.000 0.54 0.00 41.15 3.86
641 669 2.042537 AGATCCTGCTCCGCCTCA 60.043 61.111 0.00 0.00 0.00 3.86
803 871 0.108186 GGACATCATCACCTGCGACA 60.108 55.000 0.00 0.00 0.00 4.35
830 898 2.266055 CCGACAAGCTCCAGTCCC 59.734 66.667 7.95 0.00 0.00 4.46
831 899 2.266055 CGACAAGCTCCAGTCCCC 59.734 66.667 7.95 0.00 0.00 4.81
945 1028 1.993653 CCTCTCCATCTGCAACCCA 59.006 57.895 0.00 0.00 0.00 4.51
1138 1275 1.315257 CCCTGACGCCAAGGAATTGG 61.315 60.000 2.57 2.57 44.82 3.16
1139 1276 0.322456 CCTGACGCCAAGGAATTGGA 60.322 55.000 11.14 0.00 44.82 3.53
1140 1277 1.533625 CTGACGCCAAGGAATTGGAA 58.466 50.000 11.14 0.00 44.82 3.53
1141 1278 2.094675 CTGACGCCAAGGAATTGGAAT 58.905 47.619 11.14 0.00 44.82 3.01
1142 1279 2.493278 CTGACGCCAAGGAATTGGAATT 59.507 45.455 11.14 0.00 44.82 2.17
1143 1280 2.230992 TGACGCCAAGGAATTGGAATTG 59.769 45.455 11.14 0.36 44.82 2.32
1162 1305 4.402056 TTGATAAACTCCCGTGGATCTC 57.598 45.455 0.00 0.00 0.00 2.75
1179 1322 4.410555 GGATCTCTCCTTTTCCATGGTAGT 59.589 45.833 12.58 0.00 38.65 2.73
1307 1478 0.737219 GAGATGGGTGACATGCTTGC 59.263 55.000 0.00 0.00 40.72 4.01
1446 1622 4.034975 GTGCAATCTGAAGATCTTGGTAGC 59.965 45.833 14.00 9.59 32.75 3.58
1797 2230 3.417101 TGTTTGCCGATTACTGTGGATT 58.583 40.909 0.00 0.00 0.00 3.01
1808 2242 7.542477 CCGATTACTGTGGATTATGACTATGTC 59.458 40.741 0.00 0.00 0.00 3.06
1970 2405 9.914131 ATGAAGAATTGCCTTAGTTTTTCTTAC 57.086 29.630 0.00 0.00 34.52 2.34
2023 2531 0.108585 TTCCTGTTTCCTGCGCTCTT 59.891 50.000 9.73 0.00 0.00 2.85
2075 2852 9.071276 CCCGTTATATAGTGGTCTTCTTAGTAA 57.929 37.037 2.69 0.00 0.00 2.24
2254 3034 7.745015 TGTTTTATTTTAGCAGACGGTGATAC 58.255 34.615 0.00 0.00 0.00 2.24
2271 3051 5.221722 GGTGATACAAGGCAGATTATCCTCA 60.222 44.000 0.00 0.00 0.00 3.86
2289 3069 4.019321 TCCTCATTGTTGGCTAGCTAGTTT 60.019 41.667 21.62 0.00 0.00 2.66
2290 3070 4.702131 CCTCATTGTTGGCTAGCTAGTTTT 59.298 41.667 21.62 0.00 0.00 2.43
2396 3178 7.219535 GCAGTTCATTCATGTTCATGATTACAC 59.780 37.037 14.88 10.38 29.45 2.90
2438 3224 5.933790 TGAAACGTGGTGTTATAATTCTGC 58.066 37.500 0.00 0.00 40.84 4.26
2441 3227 4.189231 ACGTGGTGTTATAATTCTGCCTC 58.811 43.478 0.00 0.00 0.00 4.70
2639 3437 7.338800 TGAGATGGCTATTTTCCTTTTCATC 57.661 36.000 0.00 0.00 0.00 2.92
2645 3443 6.538742 TGGCTATTTTCCTTTTCATCTCTACG 59.461 38.462 0.00 0.00 0.00 3.51
2655 3453 9.151471 TCCTTTTCATCTCTACGAGTTTTAATG 57.849 33.333 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.732528 GCATCCACATTGATCTTCACACATC 60.733 44.000 0.00 0.00 0.00 3.06
3 4 4.097437 GCATCCACATTGATCTTCACACAT 59.903 41.667 0.00 0.00 0.00 3.21
4 5 3.441222 GCATCCACATTGATCTTCACACA 59.559 43.478 0.00 0.00 0.00 3.72
5 6 3.693085 AGCATCCACATTGATCTTCACAC 59.307 43.478 0.00 0.00 0.00 3.82
6 7 3.692593 CAGCATCCACATTGATCTTCACA 59.307 43.478 0.00 0.00 0.00 3.58
7 8 3.066342 CCAGCATCCACATTGATCTTCAC 59.934 47.826 0.00 0.00 0.00 3.18
8 9 3.054213 TCCAGCATCCACATTGATCTTCA 60.054 43.478 0.00 0.00 0.00 3.02
9 10 3.548770 TCCAGCATCCACATTGATCTTC 58.451 45.455 0.00 0.00 0.00 2.87
10 11 3.053842 ACTCCAGCATCCACATTGATCTT 60.054 43.478 0.00 0.00 0.00 2.40
11 12 2.508716 ACTCCAGCATCCACATTGATCT 59.491 45.455 0.00 0.00 0.00 2.75
12 13 2.928334 ACTCCAGCATCCACATTGATC 58.072 47.619 0.00 0.00 0.00 2.92
13 14 3.377253 AACTCCAGCATCCACATTGAT 57.623 42.857 0.00 0.00 0.00 2.57
14 15 2.885135 AACTCCAGCATCCACATTGA 57.115 45.000 0.00 0.00 0.00 2.57
15 16 2.821378 TGAAACTCCAGCATCCACATTG 59.179 45.455 0.00 0.00 0.00 2.82
16 17 3.087031 CTGAAACTCCAGCATCCACATT 58.913 45.455 0.00 0.00 0.00 2.71
17 18 2.306805 TCTGAAACTCCAGCATCCACAT 59.693 45.455 0.00 0.00 34.28 3.21
18 19 1.699083 TCTGAAACTCCAGCATCCACA 59.301 47.619 0.00 0.00 34.28 4.17
19 20 2.479566 TCTGAAACTCCAGCATCCAC 57.520 50.000 0.00 0.00 34.28 4.02
20 21 2.290514 CCTTCTGAAACTCCAGCATCCA 60.291 50.000 0.00 0.00 34.28 3.41
21 22 2.026822 TCCTTCTGAAACTCCAGCATCC 60.027 50.000 0.00 0.00 34.28 3.51
22 23 3.340814 TCCTTCTGAAACTCCAGCATC 57.659 47.619 0.00 0.00 34.28 3.91
23 24 3.416156 GTTCCTTCTGAAACTCCAGCAT 58.584 45.455 0.00 0.00 33.94 3.79
24 25 2.806745 CGTTCCTTCTGAAACTCCAGCA 60.807 50.000 0.00 0.00 33.94 4.41
25 26 1.801178 CGTTCCTTCTGAAACTCCAGC 59.199 52.381 0.00 0.00 33.94 4.85
26 27 3.386768 TCGTTCCTTCTGAAACTCCAG 57.613 47.619 0.00 0.00 33.94 3.86
27 28 3.830744 TTCGTTCCTTCTGAAACTCCA 57.169 42.857 0.00 0.00 33.94 3.86
28 29 5.294552 CCATATTCGTTCCTTCTGAAACTCC 59.705 44.000 0.00 0.00 33.94 3.85
29 30 6.106673 TCCATATTCGTTCCTTCTGAAACTC 58.893 40.000 0.00 0.00 33.94 3.01
30 31 6.049955 TCCATATTCGTTCCTTCTGAAACT 57.950 37.500 0.00 0.00 33.94 2.66
31 32 6.148811 TGTTCCATATTCGTTCCTTCTGAAAC 59.851 38.462 0.00 0.00 33.94 2.78
32 33 6.234920 TGTTCCATATTCGTTCCTTCTGAAA 58.765 36.000 0.00 0.00 33.94 2.69
33 34 5.800296 TGTTCCATATTCGTTCCTTCTGAA 58.200 37.500 0.00 0.00 0.00 3.02
34 35 5.414789 TGTTCCATATTCGTTCCTTCTGA 57.585 39.130 0.00 0.00 0.00 3.27
35 36 4.034510 GCTGTTCCATATTCGTTCCTTCTG 59.965 45.833 0.00 0.00 0.00 3.02
36 37 4.192317 GCTGTTCCATATTCGTTCCTTCT 58.808 43.478 0.00 0.00 0.00 2.85
37 38 3.938963 TGCTGTTCCATATTCGTTCCTTC 59.061 43.478 0.00 0.00 0.00 3.46
38 39 3.941483 CTGCTGTTCCATATTCGTTCCTT 59.059 43.478 0.00 0.00 0.00 3.36
39 40 3.535561 CTGCTGTTCCATATTCGTTCCT 58.464 45.455 0.00 0.00 0.00 3.36
40 41 2.032178 GCTGCTGTTCCATATTCGTTCC 59.968 50.000 0.00 0.00 0.00 3.62
41 42 2.677836 TGCTGCTGTTCCATATTCGTTC 59.322 45.455 0.00 0.00 0.00 3.95
42 43 2.679837 CTGCTGCTGTTCCATATTCGTT 59.320 45.455 0.00 0.00 0.00 3.85
43 44 2.283298 CTGCTGCTGTTCCATATTCGT 58.717 47.619 0.00 0.00 0.00 3.85
44 45 1.003116 GCTGCTGCTGTTCCATATTCG 60.003 52.381 8.53 0.00 36.03 3.34
45 46 1.003116 CGCTGCTGCTGTTCCATATTC 60.003 52.381 14.03 0.00 36.97 1.75
46 47 1.019673 CGCTGCTGCTGTTCCATATT 58.980 50.000 14.03 0.00 36.97 1.28
47 48 0.107508 ACGCTGCTGCTGTTCCATAT 60.108 50.000 14.03 0.00 36.97 1.78
48 49 0.321564 AACGCTGCTGCTGTTCCATA 60.322 50.000 14.03 0.00 33.29 2.74
49 50 0.321564 TAACGCTGCTGCTGTTCCAT 60.322 50.000 21.70 7.85 37.24 3.41
50 51 0.321564 ATAACGCTGCTGCTGTTCCA 60.322 50.000 21.70 11.36 37.24 3.53
51 52 0.097674 CATAACGCTGCTGCTGTTCC 59.902 55.000 21.70 0.00 37.24 3.62
52 53 0.798776 ACATAACGCTGCTGCTGTTC 59.201 50.000 21.70 0.00 37.24 3.18
53 54 0.798776 GACATAACGCTGCTGCTGTT 59.201 50.000 21.74 21.74 38.60 3.16
54 55 1.354337 CGACATAACGCTGCTGCTGT 61.354 55.000 14.03 10.65 36.97 4.40
55 56 1.346197 CGACATAACGCTGCTGCTG 59.654 57.895 14.03 7.45 36.97 4.41
56 57 3.786101 CGACATAACGCTGCTGCT 58.214 55.556 14.03 0.00 36.97 4.24
64 65 1.138036 TCCCTGTCGCGACATAACG 59.862 57.895 39.09 27.22 41.01 3.18
65 66 1.138047 CGTCCCTGTCGCGACATAAC 61.138 60.000 39.09 31.39 41.01 1.89
66 67 1.138036 CGTCCCTGTCGCGACATAA 59.862 57.895 39.09 24.82 41.01 1.90
67 68 2.767445 CCGTCCCTGTCGCGACATA 61.767 63.158 39.09 25.19 41.01 2.29
68 69 4.129737 CCGTCCCTGTCGCGACAT 62.130 66.667 39.09 0.00 41.01 3.06
73 74 1.673808 ATAAGTCCCGTCCCTGTCGC 61.674 60.000 0.00 0.00 0.00 5.19
74 75 0.384669 GATAAGTCCCGTCCCTGTCG 59.615 60.000 0.00 0.00 0.00 4.35
75 76 1.409427 CAGATAAGTCCCGTCCCTGTC 59.591 57.143 0.00 0.00 0.00 3.51
76 77 1.486211 CAGATAAGTCCCGTCCCTGT 58.514 55.000 0.00 0.00 0.00 4.00
77 78 0.753262 CCAGATAAGTCCCGTCCCTG 59.247 60.000 0.00 0.00 0.00 4.45
78 79 0.635009 TCCAGATAAGTCCCGTCCCT 59.365 55.000 0.00 0.00 0.00 4.20
79 80 0.751452 GTCCAGATAAGTCCCGTCCC 59.249 60.000 0.00 0.00 0.00 4.46
80 81 1.682323 GAGTCCAGATAAGTCCCGTCC 59.318 57.143 0.00 0.00 0.00 4.79
81 82 1.682323 GGAGTCCAGATAAGTCCCGTC 59.318 57.143 3.60 0.00 31.12 4.79
82 83 1.288335 AGGAGTCCAGATAAGTCCCGT 59.712 52.381 12.86 0.00 36.99 5.28
83 84 1.957877 GAGGAGTCCAGATAAGTCCCG 59.042 57.143 12.86 0.00 36.99 5.14
84 85 2.321719 GGAGGAGTCCAGATAAGTCCC 58.678 57.143 12.86 0.00 43.31 4.46
95 96 4.345257 TCAAATACTAGCATGGAGGAGTCC 59.655 45.833 0.00 0.00 44.24 3.85
96 97 5.537300 TCAAATACTAGCATGGAGGAGTC 57.463 43.478 0.00 0.00 0.00 3.36
97 98 5.163258 CCTTCAAATACTAGCATGGAGGAGT 60.163 44.000 6.25 0.00 40.45 3.85
98 99 5.303971 CCTTCAAATACTAGCATGGAGGAG 58.696 45.833 6.25 0.00 40.45 3.69
99 100 4.103153 CCCTTCAAATACTAGCATGGAGGA 59.897 45.833 11.65 0.00 40.45 3.71
100 101 4.392940 CCCTTCAAATACTAGCATGGAGG 58.607 47.826 0.00 5.43 38.15 4.30
101 102 3.817647 GCCCTTCAAATACTAGCATGGAG 59.182 47.826 0.00 0.00 0.00 3.86
102 103 3.459598 AGCCCTTCAAATACTAGCATGGA 59.540 43.478 0.00 0.00 0.00 3.41
103 104 3.825328 AGCCCTTCAAATACTAGCATGG 58.175 45.455 0.00 0.00 0.00 3.66
104 105 5.050091 CGTTAGCCCTTCAAATACTAGCATG 60.050 44.000 0.00 0.00 0.00 4.06
105 106 5.057149 CGTTAGCCCTTCAAATACTAGCAT 58.943 41.667 0.00 0.00 0.00 3.79
106 107 4.439057 CGTTAGCCCTTCAAATACTAGCA 58.561 43.478 0.00 0.00 0.00 3.49
107 108 3.808174 CCGTTAGCCCTTCAAATACTAGC 59.192 47.826 0.00 0.00 0.00 3.42
108 109 5.272283 TCCGTTAGCCCTTCAAATACTAG 57.728 43.478 0.00 0.00 0.00 2.57
109 110 5.221581 GGATCCGTTAGCCCTTCAAATACTA 60.222 44.000 0.00 0.00 0.00 1.82
110 111 4.444449 GGATCCGTTAGCCCTTCAAATACT 60.444 45.833 0.00 0.00 0.00 2.12
111 112 3.813724 GGATCCGTTAGCCCTTCAAATAC 59.186 47.826 0.00 0.00 0.00 1.89
112 113 4.081322 GGATCCGTTAGCCCTTCAAATA 57.919 45.455 0.00 0.00 0.00 1.40
113 114 2.932261 GGATCCGTTAGCCCTTCAAAT 58.068 47.619 0.00 0.00 0.00 2.32
114 115 2.413310 GGATCCGTTAGCCCTTCAAA 57.587 50.000 0.00 0.00 0.00 2.69
121 122 1.227176 GTCGTGGGATCCGTTAGCC 60.227 63.158 5.45 0.00 0.00 3.93
122 123 1.588139 CGTCGTGGGATCCGTTAGC 60.588 63.158 5.45 0.00 0.00 3.09
123 124 1.588139 GCGTCGTGGGATCCGTTAG 60.588 63.158 5.45 0.00 0.00 2.34
124 125 2.048023 AGCGTCGTGGGATCCGTTA 61.048 57.895 5.45 0.00 0.00 3.18
125 126 3.379445 AGCGTCGTGGGATCCGTT 61.379 61.111 5.45 0.00 0.00 4.44
126 127 4.129737 CAGCGTCGTGGGATCCGT 62.130 66.667 5.45 0.00 0.00 4.69
127 128 4.873129 CCAGCGTCGTGGGATCCG 62.873 72.222 5.45 0.00 33.46 4.18
128 129 2.907897 CTTCCAGCGTCGTGGGATCC 62.908 65.000 1.92 1.92 38.26 3.36
129 130 1.519455 CTTCCAGCGTCGTGGGATC 60.519 63.158 12.09 0.00 38.26 3.36
130 131 2.579201 CTTCCAGCGTCGTGGGAT 59.421 61.111 12.09 0.00 38.26 3.85
131 132 4.373116 GCTTCCAGCGTCGTGGGA 62.373 66.667 12.09 8.11 38.26 4.37
132 133 4.680237 TGCTTCCAGCGTCGTGGG 62.680 66.667 12.09 6.10 46.26 4.61
133 134 1.970917 GATTGCTTCCAGCGTCGTGG 61.971 60.000 7.33 7.33 46.26 4.94
134 135 1.421485 GATTGCTTCCAGCGTCGTG 59.579 57.895 0.00 0.00 46.26 4.35
135 136 2.094659 CGATTGCTTCCAGCGTCGT 61.095 57.895 12.55 0.00 46.26 4.34
136 137 2.697425 CGATTGCTTCCAGCGTCG 59.303 61.111 8.37 8.37 46.26 5.12
137 138 1.709147 ATGCGATTGCTTCCAGCGTC 61.709 55.000 6.47 0.00 46.26 5.19
138 139 1.746615 ATGCGATTGCTTCCAGCGT 60.747 52.632 6.47 0.00 46.26 5.07
139 140 1.298116 CATGCGATTGCTTCCAGCG 60.298 57.895 6.47 0.00 46.26 5.18
140 141 1.003116 CTACATGCGATTGCTTCCAGC 60.003 52.381 6.47 0.00 43.34 4.85
141 142 1.600957 CCTACATGCGATTGCTTCCAG 59.399 52.381 6.47 0.00 43.34 3.86
142 143 1.667236 CCTACATGCGATTGCTTCCA 58.333 50.000 6.47 0.00 43.34 3.53
143 144 0.947244 CCCTACATGCGATTGCTTCC 59.053 55.000 6.47 0.00 43.34 3.46
144 145 1.869767 CTCCCTACATGCGATTGCTTC 59.130 52.381 6.47 0.00 43.34 3.86
145 146 1.475751 CCTCCCTACATGCGATTGCTT 60.476 52.381 6.47 0.00 43.34 3.91
146 147 0.107456 CCTCCCTACATGCGATTGCT 59.893 55.000 6.47 0.00 43.34 3.91
147 148 0.886490 CCCTCCCTACATGCGATTGC 60.886 60.000 0.00 0.00 43.20 3.56
148 149 0.886490 GCCCTCCCTACATGCGATTG 60.886 60.000 0.00 0.00 0.00 2.67
149 150 1.344953 TGCCCTCCCTACATGCGATT 61.345 55.000 0.00 0.00 0.00 3.34
150 151 1.130054 ATGCCCTCCCTACATGCGAT 61.130 55.000 0.00 0.00 0.00 4.58
151 152 1.766059 ATGCCCTCCCTACATGCGA 60.766 57.895 0.00 0.00 0.00 5.10
152 153 1.598962 CATGCCCTCCCTACATGCG 60.599 63.158 0.00 0.00 35.24 4.73
153 154 1.228367 CCATGCCCTCCCTACATGC 60.228 63.158 0.00 0.00 39.86 4.06
154 155 1.228367 GCCATGCCCTCCCTACATG 60.228 63.158 0.00 0.00 40.67 3.21
155 156 1.697394 TGCCATGCCCTCCCTACAT 60.697 57.895 0.00 0.00 0.00 2.29
156 157 2.286045 TGCCATGCCCTCCCTACA 60.286 61.111 0.00 0.00 0.00 2.74
157 158 2.193248 GTGCCATGCCCTCCCTAC 59.807 66.667 0.00 0.00 0.00 3.18
158 159 2.042762 AGTGCCATGCCCTCCCTA 59.957 61.111 0.00 0.00 0.00 3.53
159 160 3.736224 CAGTGCCATGCCCTCCCT 61.736 66.667 0.00 0.00 0.00 4.20
160 161 4.828296 CCAGTGCCATGCCCTCCC 62.828 72.222 0.00 0.00 0.00 4.30
162 163 4.437587 AGCCAGTGCCATGCCCTC 62.438 66.667 0.00 0.00 38.69 4.30
163 164 4.437587 GAGCCAGTGCCATGCCCT 62.438 66.667 0.00 0.00 38.69 5.19
164 165 4.437587 AGAGCCAGTGCCATGCCC 62.438 66.667 0.00 0.00 38.69 5.36
165 166 3.138798 CAGAGCCAGTGCCATGCC 61.139 66.667 0.00 0.00 38.69 4.40
166 167 3.138798 CCAGAGCCAGTGCCATGC 61.139 66.667 0.00 0.00 38.69 4.06
167 168 1.748122 GTCCAGAGCCAGTGCCATG 60.748 63.158 0.00 0.00 38.69 3.66
168 169 1.495579 AAGTCCAGAGCCAGTGCCAT 61.496 55.000 0.00 0.00 38.69 4.40
169 170 2.149383 AAGTCCAGAGCCAGTGCCA 61.149 57.895 0.00 0.00 38.69 4.92
170 171 1.673665 CAAGTCCAGAGCCAGTGCC 60.674 63.158 0.00 0.00 38.69 5.01
171 172 1.673665 CCAAGTCCAGAGCCAGTGC 60.674 63.158 0.00 0.00 37.95 4.40
172 173 1.002868 CCCAAGTCCAGAGCCAGTG 60.003 63.158 0.00 0.00 0.00 3.66
173 174 1.152030 TCCCAAGTCCAGAGCCAGT 60.152 57.895 0.00 0.00 0.00 4.00
174 175 1.197430 ACTCCCAAGTCCAGAGCCAG 61.197 60.000 0.00 0.00 0.00 4.85
175 176 1.152030 ACTCCCAAGTCCAGAGCCA 60.152 57.895 0.00 0.00 0.00 4.75
176 177 1.194781 TCACTCCCAAGTCCAGAGCC 61.195 60.000 0.00 0.00 31.71 4.70
177 178 0.687354 TTCACTCCCAAGTCCAGAGC 59.313 55.000 0.00 0.00 31.71 4.09
178 179 1.002544 GGTTCACTCCCAAGTCCAGAG 59.997 57.143 0.00 0.00 31.71 3.35
179 180 1.056660 GGTTCACTCCCAAGTCCAGA 58.943 55.000 0.00 0.00 31.71 3.86
180 181 0.764890 TGGTTCACTCCCAAGTCCAG 59.235 55.000 0.00 0.00 31.71 3.86
181 182 1.351017 GATGGTTCACTCCCAAGTCCA 59.649 52.381 0.00 0.00 35.14 4.02
182 183 1.630878 AGATGGTTCACTCCCAAGTCC 59.369 52.381 0.00 0.00 35.14 3.85
183 184 3.260884 TGTAGATGGTTCACTCCCAAGTC 59.739 47.826 0.00 0.00 35.14 3.01
184 185 3.248024 TGTAGATGGTTCACTCCCAAGT 58.752 45.455 0.00 0.00 35.14 3.16
185 186 3.515502 TCTGTAGATGGTTCACTCCCAAG 59.484 47.826 0.00 0.00 35.14 3.61
186 187 3.516586 TCTGTAGATGGTTCACTCCCAA 58.483 45.455 0.00 0.00 35.14 4.12
187 188 3.184382 TCTGTAGATGGTTCACTCCCA 57.816 47.619 0.00 0.00 36.16 4.37
188 189 4.262249 GCTATCTGTAGATGGTTCACTCCC 60.262 50.000 4.67 0.00 35.72 4.30
189 190 4.586841 AGCTATCTGTAGATGGTTCACTCC 59.413 45.833 4.67 0.00 35.72 3.85
190 191 5.782893 AGCTATCTGTAGATGGTTCACTC 57.217 43.478 4.67 0.00 35.72 3.51
191 192 6.344500 CAAAGCTATCTGTAGATGGTTCACT 58.656 40.000 4.67 0.00 35.72 3.41
192 193 5.525378 CCAAAGCTATCTGTAGATGGTTCAC 59.475 44.000 4.67 0.00 35.72 3.18
193 194 5.425217 TCCAAAGCTATCTGTAGATGGTTCA 59.575 40.000 4.67 0.00 35.72 3.18
194 195 5.755861 GTCCAAAGCTATCTGTAGATGGTTC 59.244 44.000 4.67 0.00 35.72 3.62
195 196 5.426833 AGTCCAAAGCTATCTGTAGATGGTT 59.573 40.000 4.67 0.00 35.72 3.67
196 197 4.965532 AGTCCAAAGCTATCTGTAGATGGT 59.034 41.667 4.67 0.00 35.72 3.55
197 198 5.295950 CAGTCCAAAGCTATCTGTAGATGG 58.704 45.833 4.67 2.94 36.05 3.51
198 199 4.749099 GCAGTCCAAAGCTATCTGTAGATG 59.251 45.833 4.67 0.00 36.05 2.90
199 200 4.406972 TGCAGTCCAAAGCTATCTGTAGAT 59.593 41.667 0.00 0.00 38.51 1.98
200 201 3.769300 TGCAGTCCAAAGCTATCTGTAGA 59.231 43.478 0.00 0.00 0.00 2.59
201 202 4.128925 TGCAGTCCAAAGCTATCTGTAG 57.871 45.455 0.00 0.00 0.00 2.74
202 203 4.507710 CTTGCAGTCCAAAGCTATCTGTA 58.492 43.478 0.00 0.00 31.94 2.74
203 204 3.341823 CTTGCAGTCCAAAGCTATCTGT 58.658 45.455 0.00 0.00 31.94 3.41
204 205 2.097142 GCTTGCAGTCCAAAGCTATCTG 59.903 50.000 0.00 0.00 31.94 2.90
205 206 2.290514 TGCTTGCAGTCCAAAGCTATCT 60.291 45.455 7.30 0.00 31.94 1.98
206 207 2.086869 TGCTTGCAGTCCAAAGCTATC 58.913 47.619 7.30 0.00 31.94 2.08
207 208 2.089980 CTGCTTGCAGTCCAAAGCTAT 58.910 47.619 13.89 0.00 31.94 2.97
208 209 1.527034 CTGCTTGCAGTCCAAAGCTA 58.473 50.000 13.89 0.00 31.94 3.32
209 210 1.177256 CCTGCTTGCAGTCCAAAGCT 61.177 55.000 19.49 0.00 31.94 3.74
210 211 1.288127 CCTGCTTGCAGTCCAAAGC 59.712 57.895 19.49 1.90 31.94 3.51
211 212 1.035139 AACCTGCTTGCAGTCCAAAG 58.965 50.000 19.49 7.19 31.94 2.77
212 213 2.356665 TAACCTGCTTGCAGTCCAAA 57.643 45.000 19.49 0.24 31.94 3.28
213 214 2.584835 ATAACCTGCTTGCAGTCCAA 57.415 45.000 19.49 4.66 0.00 3.53
214 215 3.712016 TTATAACCTGCTTGCAGTCCA 57.288 42.857 19.49 5.94 0.00 4.02
215 216 4.357018 GTTTATAACCTGCTTGCAGTCC 57.643 45.455 19.49 0.00 0.00 3.85
228 229 8.462016 AGCTCTTTGATGAATGTGGTTTATAAC 58.538 33.333 0.00 0.00 0.00 1.89
229 230 8.461222 CAGCTCTTTGATGAATGTGGTTTATAA 58.539 33.333 0.00 0.00 33.12 0.98
230 231 7.067372 CCAGCTCTTTGATGAATGTGGTTTATA 59.933 37.037 0.00 0.00 33.12 0.98
231 232 6.127535 CCAGCTCTTTGATGAATGTGGTTTAT 60.128 38.462 0.00 0.00 33.12 1.40
232 233 5.183713 CCAGCTCTTTGATGAATGTGGTTTA 59.816 40.000 0.00 0.00 33.12 2.01
233 234 4.021719 CCAGCTCTTTGATGAATGTGGTTT 60.022 41.667 0.00 0.00 33.12 3.27
234 235 3.508793 CCAGCTCTTTGATGAATGTGGTT 59.491 43.478 0.00 0.00 33.12 3.67
235 236 3.087031 CCAGCTCTTTGATGAATGTGGT 58.913 45.455 0.00 0.00 33.12 4.16
236 237 3.349927 TCCAGCTCTTTGATGAATGTGG 58.650 45.455 0.00 0.00 33.12 4.17
237 238 3.377485 CCTCCAGCTCTTTGATGAATGTG 59.623 47.826 0.00 0.00 33.12 3.21
238 239 3.265221 TCCTCCAGCTCTTTGATGAATGT 59.735 43.478 0.00 0.00 33.12 2.71
239 240 3.878103 CTCCTCCAGCTCTTTGATGAATG 59.122 47.826 0.00 0.00 33.12 2.67
240 241 3.779183 TCTCCTCCAGCTCTTTGATGAAT 59.221 43.478 0.00 0.00 33.12 2.57
241 242 3.055530 GTCTCCTCCAGCTCTTTGATGAA 60.056 47.826 0.00 0.00 33.12 2.57
242 243 2.499289 GTCTCCTCCAGCTCTTTGATGA 59.501 50.000 0.00 0.00 33.12 2.92
243 244 2.419851 GGTCTCCTCCAGCTCTTTGATG 60.420 54.545 0.00 0.00 0.00 3.07
244 245 1.836802 GGTCTCCTCCAGCTCTTTGAT 59.163 52.381 0.00 0.00 0.00 2.57
245 246 1.270907 GGTCTCCTCCAGCTCTTTGA 58.729 55.000 0.00 0.00 0.00 2.69
246 247 0.979665 TGGTCTCCTCCAGCTCTTTG 59.020 55.000 0.00 0.00 33.19 2.77
247 248 1.558756 CATGGTCTCCTCCAGCTCTTT 59.441 52.381 0.00 0.00 41.05 2.52
248 249 1.202330 CATGGTCTCCTCCAGCTCTT 58.798 55.000 0.00 0.00 41.05 2.85
249 250 0.690411 CCATGGTCTCCTCCAGCTCT 60.690 60.000 2.57 0.00 41.05 4.09
250 251 1.828768 CCATGGTCTCCTCCAGCTC 59.171 63.158 2.57 0.00 41.05 4.09
251 252 2.373707 GCCATGGTCTCCTCCAGCT 61.374 63.158 14.67 0.00 41.05 4.24
252 253 2.191641 GCCATGGTCTCCTCCAGC 59.808 66.667 14.67 0.00 41.05 4.85
253 254 1.270414 ACTGCCATGGTCTCCTCCAG 61.270 60.000 14.67 12.27 41.05 3.86
254 255 0.042581 TACTGCCATGGTCTCCTCCA 59.957 55.000 14.67 0.00 42.01 3.86
255 256 1.428869 ATACTGCCATGGTCTCCTCC 58.571 55.000 14.67 0.00 0.00 4.30
256 257 2.171448 ACAATACTGCCATGGTCTCCTC 59.829 50.000 14.67 0.00 0.00 3.71
257 258 2.171448 GACAATACTGCCATGGTCTCCT 59.829 50.000 14.67 0.00 0.00 3.69
258 259 2.092968 TGACAATACTGCCATGGTCTCC 60.093 50.000 14.67 0.00 31.17 3.71
259 260 3.118629 TCTGACAATACTGCCATGGTCTC 60.119 47.826 14.67 0.00 31.17 3.36
260 261 2.840038 TCTGACAATACTGCCATGGTCT 59.160 45.455 14.67 0.00 31.17 3.85
261 262 3.118629 TCTCTGACAATACTGCCATGGTC 60.119 47.826 14.67 6.41 30.60 4.02
262 263 2.840038 TCTCTGACAATACTGCCATGGT 59.160 45.455 14.67 0.00 0.00 3.55
263 264 3.548745 TCTCTGACAATACTGCCATGG 57.451 47.619 7.63 7.63 0.00 3.66
264 265 6.446781 AATTTCTCTGACAATACTGCCATG 57.553 37.500 0.00 0.00 0.00 3.66
265 266 7.472334 AAAATTTCTCTGACAATACTGCCAT 57.528 32.000 0.00 0.00 0.00 4.40
266 267 6.899393 AAAATTTCTCTGACAATACTGCCA 57.101 33.333 0.00 0.00 0.00 4.92
267 268 7.816640 TGTAAAATTTCTCTGACAATACTGCC 58.183 34.615 0.00 0.00 0.00 4.85
268 269 9.677567 TTTGTAAAATTTCTCTGACAATACTGC 57.322 29.630 0.00 0.00 0.00 4.40
288 289 9.492973 AGCGGTAAATAAAGTAGAAGTTTGTAA 57.507 29.630 0.00 0.00 0.00 2.41
289 290 9.492973 AAGCGGTAAATAAAGTAGAAGTTTGTA 57.507 29.630 0.00 0.00 0.00 2.41
290 291 7.974482 AGCGGTAAATAAAGTAGAAGTTTGT 57.026 32.000 0.00 0.00 0.00 2.83
291 292 8.287503 ACAAGCGGTAAATAAAGTAGAAGTTTG 58.712 33.333 0.00 0.00 0.00 2.93
292 293 8.387190 ACAAGCGGTAAATAAAGTAGAAGTTT 57.613 30.769 0.00 0.00 0.00 2.66
293 294 7.974482 ACAAGCGGTAAATAAAGTAGAAGTT 57.026 32.000 0.00 0.00 0.00 2.66
294 295 9.662947 ATTACAAGCGGTAAATAAAGTAGAAGT 57.337 29.630 7.87 0.00 44.70 3.01
305 306 9.535878 TCAAAAAGAAAATTACAAGCGGTAAAT 57.464 25.926 7.87 0.00 44.70 1.40
306 307 8.928270 TCAAAAAGAAAATTACAAGCGGTAAA 57.072 26.923 7.87 0.00 44.70 2.01
307 308 8.809478 GTTCAAAAAGAAAATTACAAGCGGTAA 58.191 29.630 6.50 6.50 41.04 2.85
308 309 7.435784 GGTTCAAAAAGAAAATTACAAGCGGTA 59.564 33.333 0.00 0.00 38.13 4.02
309 310 6.256975 GGTTCAAAAAGAAAATTACAAGCGGT 59.743 34.615 0.00 0.00 38.13 5.68
310 311 6.478673 AGGTTCAAAAAGAAAATTACAAGCGG 59.521 34.615 0.00 0.00 38.13 5.52
311 312 7.463469 AGGTTCAAAAAGAAAATTACAAGCG 57.537 32.000 0.00 0.00 38.13 4.68
312 313 7.434013 TCGAGGTTCAAAAAGAAAATTACAAGC 59.566 33.333 0.00 0.00 38.13 4.01
313 314 8.850454 TCGAGGTTCAAAAAGAAAATTACAAG 57.150 30.769 0.00 0.00 38.13 3.16
314 315 8.679100 TCTCGAGGTTCAAAAAGAAAATTACAA 58.321 29.630 13.56 0.00 38.13 2.41
315 316 8.215926 TCTCGAGGTTCAAAAAGAAAATTACA 57.784 30.769 13.56 0.00 38.13 2.41
316 317 8.343366 ACTCTCGAGGTTCAAAAAGAAAATTAC 58.657 33.333 13.56 0.00 38.13 1.89
317 318 8.446599 ACTCTCGAGGTTCAAAAAGAAAATTA 57.553 30.769 13.56 0.00 38.13 1.40
318 319 7.067008 TGACTCTCGAGGTTCAAAAAGAAAATT 59.933 33.333 13.56 0.00 38.13 1.82
319 320 6.542370 TGACTCTCGAGGTTCAAAAAGAAAAT 59.458 34.615 13.56 0.00 38.13 1.82
320 321 5.878116 TGACTCTCGAGGTTCAAAAAGAAAA 59.122 36.000 13.56 0.00 38.13 2.29
321 322 5.424757 TGACTCTCGAGGTTCAAAAAGAAA 58.575 37.500 13.56 0.00 38.13 2.52
322 323 5.018539 TGACTCTCGAGGTTCAAAAAGAA 57.981 39.130 13.56 0.00 0.00 2.52
323 324 4.665833 TGACTCTCGAGGTTCAAAAAGA 57.334 40.909 13.56 0.00 0.00 2.52
324 325 5.294552 AGTTTGACTCTCGAGGTTCAAAAAG 59.705 40.000 28.78 14.89 0.00 2.27
325 326 5.183228 AGTTTGACTCTCGAGGTTCAAAAA 58.817 37.500 28.78 15.61 0.00 1.94
326 327 4.766375 AGTTTGACTCTCGAGGTTCAAAA 58.234 39.130 28.78 17.78 0.00 2.44
327 328 4.402056 AGTTTGACTCTCGAGGTTCAAA 57.598 40.909 25.84 25.84 0.00 2.69
328 329 5.243060 TCATAGTTTGACTCTCGAGGTTCAA 59.757 40.000 19.63 19.63 0.00 2.69
329 330 4.765339 TCATAGTTTGACTCTCGAGGTTCA 59.235 41.667 13.56 12.35 0.00 3.18
330 331 5.312120 TCATAGTTTGACTCTCGAGGTTC 57.688 43.478 13.56 9.77 0.00 3.62
331 332 4.158764 CCTCATAGTTTGACTCTCGAGGTT 59.841 45.833 13.56 0.00 35.23 3.50
332 333 3.697045 CCTCATAGTTTGACTCTCGAGGT 59.303 47.826 13.56 9.47 35.23 3.85
333 334 3.490078 GCCTCATAGTTTGACTCTCGAGG 60.490 52.174 13.56 5.96 39.30 4.63
334 335 3.380004 AGCCTCATAGTTTGACTCTCGAG 59.620 47.826 5.93 5.93 0.00 4.04
335 336 3.357203 AGCCTCATAGTTTGACTCTCGA 58.643 45.455 0.00 0.00 0.00 4.04
336 337 3.129462 TGAGCCTCATAGTTTGACTCTCG 59.871 47.826 0.00 0.00 33.48 4.04
337 338 4.727507 TGAGCCTCATAGTTTGACTCTC 57.272 45.455 0.00 3.12 31.73 3.20
338 339 6.403866 CTATGAGCCTCATAGTTTGACTCT 57.596 41.667 26.74 0.00 46.92 3.24
348 349 6.628644 TCTAGCTAGTCTATGAGCCTCATA 57.371 41.667 20.10 13.58 38.26 2.15
349 350 5.512942 TCTAGCTAGTCTATGAGCCTCAT 57.487 43.478 20.10 12.62 40.72 2.90
350 351 4.984146 TCTAGCTAGTCTATGAGCCTCA 57.016 45.455 20.10 0.00 39.65 3.86
351 352 6.350110 CCAAATCTAGCTAGTCTATGAGCCTC 60.350 46.154 20.10 0.00 39.65 4.70
352 353 5.480073 CCAAATCTAGCTAGTCTATGAGCCT 59.520 44.000 20.10 0.00 39.65 4.58
353 354 5.719173 CCAAATCTAGCTAGTCTATGAGCC 58.281 45.833 20.10 0.00 39.65 4.70
354 355 5.167845 GCCAAATCTAGCTAGTCTATGAGC 58.832 45.833 20.10 14.63 39.08 4.26
355 356 6.338214 TGCCAAATCTAGCTAGTCTATGAG 57.662 41.667 20.10 10.15 0.00 2.90
356 357 6.924913 ATGCCAAATCTAGCTAGTCTATGA 57.075 37.500 20.10 0.41 0.00 2.15
357 358 7.148672 CGAAATGCCAAATCTAGCTAGTCTATG 60.149 40.741 20.10 14.03 0.00 2.23
358 359 6.870965 CGAAATGCCAAATCTAGCTAGTCTAT 59.129 38.462 20.10 4.16 0.00 1.98
359 360 6.216569 CGAAATGCCAAATCTAGCTAGTCTA 58.783 40.000 20.10 1.66 0.00 2.59
360 361 5.053145 CGAAATGCCAAATCTAGCTAGTCT 58.947 41.667 20.10 6.70 0.00 3.24
361 362 4.319118 GCGAAATGCCAAATCTAGCTAGTC 60.319 45.833 20.10 5.73 37.76 2.59
362 363 3.561725 GCGAAATGCCAAATCTAGCTAGT 59.438 43.478 20.10 5.41 37.76 2.57
363 364 4.139183 GCGAAATGCCAAATCTAGCTAG 57.861 45.455 15.01 15.01 37.76 3.42
390 391 0.681175 AACCACAAATGCCTTCCAGC 59.319 50.000 0.00 0.00 0.00 4.85
391 392 1.001181 CCAACCACAAATGCCTTCCAG 59.999 52.381 0.00 0.00 0.00 3.86
392 393 1.047002 CCAACCACAAATGCCTTCCA 58.953 50.000 0.00 0.00 0.00 3.53
393 394 0.321346 CCCAACCACAAATGCCTTCC 59.679 55.000 0.00 0.00 0.00 3.46
394 395 0.320683 GCCCAACCACAAATGCCTTC 60.321 55.000 0.00 0.00 0.00 3.46
395 396 1.053264 TGCCCAACCACAAATGCCTT 61.053 50.000 0.00 0.00 0.00 4.35
396 397 1.459158 TGCCCAACCACAAATGCCT 60.459 52.632 0.00 0.00 0.00 4.75
397 398 1.301637 GTGCCCAACCACAAATGCC 60.302 57.895 0.00 0.00 35.80 4.40
398 399 4.359475 GTGCCCAACCACAAATGC 57.641 55.556 0.00 0.00 35.80 3.56
407 408 2.283101 TCATGCTGGGTGCCCAAC 60.283 61.111 11.54 7.56 46.63 3.77
408 409 2.283101 GTCATGCTGGGTGCCCAA 60.283 61.111 11.54 0.00 46.63 4.12
409 410 4.365111 GGTCATGCTGGGTGCCCA 62.365 66.667 9.90 9.90 45.02 5.36
412 413 3.704231 ATCGGGTCATGCTGGGTGC 62.704 63.158 0.00 0.00 43.25 5.01
413 414 1.077501 AATCGGGTCATGCTGGGTG 60.078 57.895 0.00 0.00 0.00 4.61
414 415 1.077501 CAATCGGGTCATGCTGGGT 60.078 57.895 0.00 0.00 0.00 4.51
415 416 0.180171 TACAATCGGGTCATGCTGGG 59.820 55.000 0.00 0.00 0.00 4.45
416 417 2.036958 TTACAATCGGGTCATGCTGG 57.963 50.000 0.00 0.00 0.00 4.85
417 418 2.549754 GGATTACAATCGGGTCATGCTG 59.450 50.000 0.00 0.00 36.27 4.41
418 419 2.487265 GGGATTACAATCGGGTCATGCT 60.487 50.000 0.00 0.00 36.27 3.79
419 420 1.880027 GGGATTACAATCGGGTCATGC 59.120 52.381 0.00 0.00 36.27 4.06
420 421 3.492102 AGGGATTACAATCGGGTCATG 57.508 47.619 0.00 0.00 36.27 3.07
421 422 4.844085 TCATAGGGATTACAATCGGGTCAT 59.156 41.667 0.00 0.00 36.27 3.06
422 423 4.228010 TCATAGGGATTACAATCGGGTCA 58.772 43.478 0.00 0.00 36.27 4.02
423 424 4.884668 TCATAGGGATTACAATCGGGTC 57.115 45.455 0.00 0.00 36.27 4.46
424 425 4.410883 TGTTCATAGGGATTACAATCGGGT 59.589 41.667 0.00 0.00 36.27 5.28
425 426 4.968259 TGTTCATAGGGATTACAATCGGG 58.032 43.478 0.00 0.00 36.27 5.14
426 427 6.467677 AGATGTTCATAGGGATTACAATCGG 58.532 40.000 0.00 0.00 36.27 4.18
427 428 7.969536 AAGATGTTCATAGGGATTACAATCG 57.030 36.000 0.00 0.00 36.27 3.34
428 429 8.940952 GCTAAGATGTTCATAGGGATTACAATC 58.059 37.037 0.00 0.00 34.66 2.67
429 430 7.885399 GGCTAAGATGTTCATAGGGATTACAAT 59.115 37.037 0.00 0.00 0.00 2.71
430 431 7.224297 GGCTAAGATGTTCATAGGGATTACAA 58.776 38.462 0.00 0.00 0.00 2.41
431 432 6.518369 CGGCTAAGATGTTCATAGGGATTACA 60.518 42.308 0.00 0.00 0.00 2.41
432 433 5.869888 CGGCTAAGATGTTCATAGGGATTAC 59.130 44.000 0.00 0.00 0.00 1.89
433 434 5.778241 TCGGCTAAGATGTTCATAGGGATTA 59.222 40.000 0.00 0.00 0.00 1.75
434 435 4.593206 TCGGCTAAGATGTTCATAGGGATT 59.407 41.667 0.00 0.00 0.00 3.01
435 436 4.160329 TCGGCTAAGATGTTCATAGGGAT 58.840 43.478 0.00 0.00 0.00 3.85
436 437 3.572642 TCGGCTAAGATGTTCATAGGGA 58.427 45.455 0.00 0.00 0.00 4.20
437 438 4.021104 TGATCGGCTAAGATGTTCATAGGG 60.021 45.833 0.00 0.00 0.00 3.53
438 439 5.139435 TGATCGGCTAAGATGTTCATAGG 57.861 43.478 0.00 0.00 0.00 2.57
439 440 8.763049 TTATTGATCGGCTAAGATGTTCATAG 57.237 34.615 0.00 0.00 0.00 2.23
440 441 9.208022 CTTTATTGATCGGCTAAGATGTTCATA 57.792 33.333 0.00 0.00 0.00 2.15
441 442 7.716998 ACTTTATTGATCGGCTAAGATGTTCAT 59.283 33.333 4.96 0.00 0.00 2.57
442 443 7.047891 ACTTTATTGATCGGCTAAGATGTTCA 58.952 34.615 4.96 0.00 0.00 3.18
443 444 7.439655 AGACTTTATTGATCGGCTAAGATGTTC 59.560 37.037 4.96 0.00 0.00 3.18
444 445 7.275920 AGACTTTATTGATCGGCTAAGATGTT 58.724 34.615 4.96 0.00 0.00 2.71
445 446 6.821388 AGACTTTATTGATCGGCTAAGATGT 58.179 36.000 4.96 0.00 0.00 3.06
446 447 6.088749 CGAGACTTTATTGATCGGCTAAGATG 59.911 42.308 4.96 0.00 0.00 2.90
447 448 6.153067 CGAGACTTTATTGATCGGCTAAGAT 58.847 40.000 4.96 0.00 0.00 2.40
448 449 5.507482 CCGAGACTTTATTGATCGGCTAAGA 60.507 44.000 0.00 0.00 45.47 2.10
449 450 4.681942 CCGAGACTTTATTGATCGGCTAAG 59.318 45.833 0.00 0.00 45.47 2.18
450 451 4.617959 CCGAGACTTTATTGATCGGCTAA 58.382 43.478 0.00 0.00 45.47 3.09
451 452 4.238761 CCGAGACTTTATTGATCGGCTA 57.761 45.455 0.00 0.00 45.47 3.93
452 453 3.099267 CCGAGACTTTATTGATCGGCT 57.901 47.619 0.00 0.00 45.47 5.52
455 456 1.787155 CCGCCGAGACTTTATTGATCG 59.213 52.381 0.00 0.00 0.00 3.69
456 457 2.135933 CCCGCCGAGACTTTATTGATC 58.864 52.381 0.00 0.00 0.00 2.92
457 458 1.202651 CCCCGCCGAGACTTTATTGAT 60.203 52.381 0.00 0.00 0.00 2.57
458 459 0.177141 CCCCGCCGAGACTTTATTGA 59.823 55.000 0.00 0.00 0.00 2.57
459 460 0.107848 ACCCCGCCGAGACTTTATTG 60.108 55.000 0.00 0.00 0.00 1.90
460 461 0.616891 AACCCCGCCGAGACTTTATT 59.383 50.000 0.00 0.00 0.00 1.40
461 462 0.616891 AAACCCCGCCGAGACTTTAT 59.383 50.000 0.00 0.00 0.00 1.40
462 463 0.397564 AAAACCCCGCCGAGACTTTA 59.602 50.000 0.00 0.00 0.00 1.85
463 464 1.149854 AAAACCCCGCCGAGACTTT 59.850 52.632 0.00 0.00 0.00 2.66
464 465 1.599797 CAAAACCCCGCCGAGACTT 60.600 57.895 0.00 0.00 0.00 3.01
465 466 2.032071 CAAAACCCCGCCGAGACT 59.968 61.111 0.00 0.00 0.00 3.24
466 467 2.281276 ACAAAACCCCGCCGAGAC 60.281 61.111 0.00 0.00 0.00 3.36
467 468 2.031465 GACAAAACCCCGCCGAGA 59.969 61.111 0.00 0.00 0.00 4.04
468 469 2.032071 AGACAAAACCCCGCCGAG 59.968 61.111 0.00 0.00 0.00 4.63
469 470 2.031465 GAGACAAAACCCCGCCGA 59.969 61.111 0.00 0.00 0.00 5.54
470 471 1.448922 TTTGAGACAAAACCCCGCCG 61.449 55.000 0.00 0.00 0.00 6.46
471 472 0.747852 TTTTGAGACAAAACCCCGCC 59.252 50.000 5.70 0.00 0.00 6.13
472 473 2.588027 TTTTTGAGACAAAACCCCGC 57.412 45.000 8.79 0.00 0.00 6.13
491 492 5.193728 TGGATCTAGGGCATACTTCCTTTTT 59.806 40.000 0.00 0.00 34.75 1.94
492 493 4.726825 TGGATCTAGGGCATACTTCCTTTT 59.273 41.667 0.00 0.00 34.75 2.27
493 494 4.103311 GTGGATCTAGGGCATACTTCCTTT 59.897 45.833 0.00 0.00 34.75 3.11
494 495 3.648545 GTGGATCTAGGGCATACTTCCTT 59.351 47.826 0.00 0.00 34.75 3.36
495 496 3.116551 AGTGGATCTAGGGCATACTTCCT 60.117 47.826 0.00 0.00 37.18 3.36
496 497 3.243724 AGTGGATCTAGGGCATACTTCC 58.756 50.000 0.00 0.00 0.00 3.46
497 498 3.259625 GGAGTGGATCTAGGGCATACTTC 59.740 52.174 0.00 0.00 0.00 3.01
498 499 3.243724 GGAGTGGATCTAGGGCATACTT 58.756 50.000 0.00 0.00 0.00 2.24
499 500 2.180086 TGGAGTGGATCTAGGGCATACT 59.820 50.000 0.00 0.00 0.00 2.12
500 501 2.609747 TGGAGTGGATCTAGGGCATAC 58.390 52.381 0.00 0.00 0.00 2.39
501 502 2.972713 GTTGGAGTGGATCTAGGGCATA 59.027 50.000 0.00 0.00 0.00 3.14
502 503 1.771255 GTTGGAGTGGATCTAGGGCAT 59.229 52.381 0.00 0.00 0.00 4.40
503 504 1.204146 GTTGGAGTGGATCTAGGGCA 58.796 55.000 0.00 0.00 0.00 5.36
504 505 0.470341 GGTTGGAGTGGATCTAGGGC 59.530 60.000 0.00 0.00 0.00 5.19
505 506 1.132500 GGGTTGGAGTGGATCTAGGG 58.868 60.000 0.00 0.00 0.00 3.53
506 507 1.132500 GGGGTTGGAGTGGATCTAGG 58.868 60.000 0.00 0.00 0.00 3.02
507 508 1.132500 GGGGGTTGGAGTGGATCTAG 58.868 60.000 0.00 0.00 0.00 2.43
508 509 0.419865 TGGGGGTTGGAGTGGATCTA 59.580 55.000 0.00 0.00 0.00 1.98
509 510 1.163309 TGGGGGTTGGAGTGGATCT 59.837 57.895 0.00 0.00 0.00 2.75
510 511 1.208165 AGTGGGGGTTGGAGTGGATC 61.208 60.000 0.00 0.00 0.00 3.36
511 512 1.151587 AGTGGGGGTTGGAGTGGAT 60.152 57.895 0.00 0.00 0.00 3.41
512 513 1.846124 GAGTGGGGGTTGGAGTGGA 60.846 63.158 0.00 0.00 0.00 4.02
513 514 2.757077 GAGTGGGGGTTGGAGTGG 59.243 66.667 0.00 0.00 0.00 4.00
514 515 1.842381 GAGGAGTGGGGGTTGGAGTG 61.842 65.000 0.00 0.00 0.00 3.51
515 516 1.539124 GAGGAGTGGGGGTTGGAGT 60.539 63.158 0.00 0.00 0.00 3.85
516 517 2.301738 GGAGGAGTGGGGGTTGGAG 61.302 68.421 0.00 0.00 0.00 3.86
517 518 2.204090 GGAGGAGTGGGGGTTGGA 60.204 66.667 0.00 0.00 0.00 3.53
518 519 2.204151 AGGAGGAGTGGGGGTTGG 60.204 66.667 0.00 0.00 0.00 3.77
519 520 0.042731 TAGAGGAGGAGTGGGGGTTG 59.957 60.000 0.00 0.00 0.00 3.77
520 521 0.042881 GTAGAGGAGGAGTGGGGGTT 59.957 60.000 0.00 0.00 0.00 4.11
521 522 1.704704 GTAGAGGAGGAGTGGGGGT 59.295 63.158 0.00 0.00 0.00 4.95
522 523 1.075151 GGTAGAGGAGGAGTGGGGG 60.075 68.421 0.00 0.00 0.00 5.40
523 524 0.688087 GTGGTAGAGGAGGAGTGGGG 60.688 65.000 0.00 0.00 0.00 4.96
605 633 3.117745 TCTCCCAGATGGTGATGTCATT 58.882 45.455 0.00 0.00 31.71 2.57
614 642 0.030297 AGCAGGATCTCCCAGATGGT 60.030 55.000 0.00 0.00 34.53 3.55
641 669 2.534533 GAGGAGGGGTTTGGGGGT 60.535 66.667 0.00 0.00 0.00 4.95
830 898 4.537533 CGTCAAATCGCGCGACGG 62.538 66.667 37.37 26.02 46.59 4.79
945 1028 0.457851 GAGCATACTGACGAGTGGCT 59.542 55.000 5.37 5.37 43.15 4.75
1066 1203 4.684485 GCCTAATGTGAAGACATAGGTGCT 60.684 45.833 0.00 0.00 42.30 4.40
1069 1206 4.965532 AGAGCCTAATGTGAAGACATAGGT 59.034 41.667 0.00 0.00 42.30 3.08
1138 1275 5.368989 AGATCCACGGGAGTTTATCAATTC 58.631 41.667 0.00 0.00 44.67 2.17
1139 1276 5.131142 AGAGATCCACGGGAGTTTATCAATT 59.869 40.000 0.00 0.00 44.67 2.32
1140 1277 4.656112 AGAGATCCACGGGAGTTTATCAAT 59.344 41.667 0.00 0.00 44.67 2.57
1141 1278 4.030913 AGAGATCCACGGGAGTTTATCAA 58.969 43.478 0.00 0.00 44.67 2.57
1142 1279 3.637229 GAGAGATCCACGGGAGTTTATCA 59.363 47.826 0.00 0.00 44.67 2.15
1143 1280 3.006003 GGAGAGATCCACGGGAGTTTATC 59.994 52.174 0.00 0.00 44.67 1.75
1162 1305 3.826157 TGCAAACTACCATGGAAAAGGAG 59.174 43.478 21.47 7.76 0.00 3.69
1192 1335 6.318648 TCAAATACCATTATCAGGTTGTCTGC 59.681 38.462 0.00 0.00 43.06 4.26
1307 1478 3.270027 TCGTCATTAAGGCTGAACATGG 58.730 45.455 0.00 0.00 0.00 3.66
1411 1587 2.097629 CAGATTGCACCATGAGCTCTTG 59.902 50.000 20.00 20.00 0.00 3.02
1446 1622 2.045536 GCCTCCACTTCCCAGCAG 60.046 66.667 0.00 0.00 0.00 4.24
1808 2242 6.431234 AGAAGCCCATAACTGAGTTTAACAAG 59.569 38.462 1.97 0.00 0.00 3.16
1869 2303 7.584122 TGCTAACCAAAACAACCAAGTAATA 57.416 32.000 0.00 0.00 0.00 0.98
2023 2531 5.584251 GGAAAAGGCAAAAGTGAACAAATCA 59.416 36.000 0.00 0.00 35.05 2.57
2086 2863 4.039852 GGGACCAAGAGGAAGCTAGATTAG 59.960 50.000 0.00 0.00 38.69 1.73
2097 2874 3.913799 TCAATAAACAGGGACCAAGAGGA 59.086 43.478 0.00 0.00 38.69 3.71
2134 2911 5.449553 AGAAGACCTCAAAACAAAGGACAT 58.550 37.500 0.00 0.00 36.46 3.06
2254 3034 5.221185 CCAACAATGAGGATAATCTGCCTTG 60.221 44.000 0.00 0.00 33.84 3.61
2271 3051 5.648092 CAGGTAAAACTAGCTAGCCAACAAT 59.352 40.000 20.91 3.23 0.00 2.71
2289 3069 5.013079 TCCAAGCTCTTCAGAAATCAGGTAA 59.987 40.000 0.00 0.00 0.00 2.85
2290 3070 4.532126 TCCAAGCTCTTCAGAAATCAGGTA 59.468 41.667 0.00 0.00 0.00 3.08
2396 3178 6.036083 CGTTTCAATACCTGACCAGATGTTAG 59.964 42.308 0.00 0.00 32.21 2.34
2438 3224 4.730949 ATTCCAAATGATGCAACAGAGG 57.269 40.909 2.25 4.46 0.00 3.69
2480 3266 6.531594 GTGATTTCTTTAAATGGTTAGCAGCC 59.468 38.462 0.00 0.00 35.41 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.