Multiple sequence alignment - TraesCS3A01G468400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G468400 chr3A 100.000 3085 0 0 1 3085 701220331 701217247 0.000000e+00 5698.0
1 TraesCS3A01G468400 chr3A 82.560 711 121 3 1362 2072 735981617 735980910 9.390000e-175 623.0
2 TraesCS3A01G468400 chr3A 82.410 722 117 7 1358 2074 735976095 735975379 3.380000e-174 621.0
3 TraesCS3A01G468400 chr3A 79.674 674 130 6 1359 2030 735846386 735847054 2.150000e-131 479.0
4 TraesCS3A01G468400 chr3B 89.824 1592 115 26 658 2239 755805359 755806913 0.000000e+00 1999.0
5 TraesCS3A01G468400 chr3B 90.598 585 49 3 2494 3073 759351918 759352501 0.000000e+00 771.0
6 TraesCS3A01G468400 chr3B 80.952 714 127 6 1362 2072 812726760 812726053 9.660000e-155 556.0
7 TraesCS3A01G468400 chr3B 90.446 157 10 5 223 374 136809656 136809500 5.220000e-48 202.0
8 TraesCS3A01G468400 chr3D 91.707 1435 79 18 889 2301 566080501 566081917 0.000000e+00 1954.0
9 TraesCS3A01G468400 chr3D 82.684 693 113 6 1358 2048 604968076 604967389 2.630000e-170 608.0
10 TraesCS3A01G468400 chr3D 80.839 715 134 2 1358 2072 605026832 605026121 2.690000e-155 558.0
11 TraesCS3A01G468400 chr3D 90.338 207 14 2 656 856 566080300 566080506 1.820000e-67 267.0
12 TraesCS3A01G468400 chr3D 84.135 208 22 6 393 597 566078555 566078754 1.130000e-44 191.0
13 TraesCS3A01G468400 chr1B 90.769 585 44 5 2495 3073 93856339 93855759 0.000000e+00 773.0
14 TraesCS3A01G468400 chr1B 79.454 696 126 13 1361 2049 14138310 14138995 7.740000e-131 477.0
15 TraesCS3A01G468400 chr7A 90.582 584 49 3 2494 3073 389344720 389345301 0.000000e+00 769.0
16 TraesCS3A01G468400 chr5D 90.427 585 51 2 2493 3073 70888222 70887639 0.000000e+00 765.0
17 TraesCS3A01G468400 chr4D 90.582 584 41 2 2494 3073 419212414 419211841 0.000000e+00 761.0
18 TraesCS3A01G468400 chr4D 79.580 715 135 9 1362 2072 485043041 485042334 4.590000e-138 501.0
19 TraesCS3A01G468400 chr4D 94.030 67 4 0 1199 1265 485043333 485043267 5.440000e-18 102.0
20 TraesCS3A01G468400 chr4D 94.030 67 4 0 1199 1265 485065276 485065210 5.440000e-18 102.0
21 TraesCS3A01G468400 chr4D 93.939 66 4 0 1199 1264 484934220 484934155 1.960000e-17 100.0
22 TraesCS3A01G468400 chr4D 93.939 66 4 0 1199 1264 484952140 484952075 1.960000e-17 100.0
23 TraesCS3A01G468400 chr1A 90.240 584 52 2 2494 3073 504658852 504659434 0.000000e+00 758.0
24 TraesCS3A01G468400 chr1A 78.970 699 124 16 1361 2049 11555172 11555857 3.630000e-124 455.0
25 TraesCS3A01G468400 chr4B 90.306 588 39 4 2490 3073 517125188 517124615 0.000000e+00 754.0
26 TraesCS3A01G468400 chr4B 92.308 78 6 0 225 302 416118576 416118499 9.040000e-21 111.0
27 TraesCS3A01G468400 chr4B 95.455 66 3 0 1199 1264 618241345 618241280 4.210000e-19 106.0
28 TraesCS3A01G468400 chr2A 90.020 501 43 4 2578 3073 534598340 534598838 2.590000e-180 641.0
29 TraesCS3A01G468400 chr2B 87.879 462 51 2 2616 3073 792203183 792203643 3.500000e-149 538.0
30 TraesCS3A01G468400 chr2B 75.115 655 123 30 1395 2029 443147939 443147305 1.410000e-68 270.0
31 TraesCS3A01G468400 chr2B 75.115 655 123 30 1395 2029 443224081 443224715 1.410000e-68 270.0
32 TraesCS3A01G468400 chr1D 78.174 701 126 18 1361 2049 9745190 9745875 3.680000e-114 422.0
33 TraesCS3A01G468400 chr1D 78.512 121 23 2 222 339 458129041 458129161 3.300000e-10 76.8
34 TraesCS3A01G468400 chr4A 82.938 422 61 9 2666 3084 645587805 645587392 1.350000e-98 370.0
35 TraesCS3A01G468400 chr7D 86.709 158 18 3 2489 2645 159698496 159698341 4.090000e-39 172.0
36 TraesCS3A01G468400 chr6D 84.615 169 20 4 2477 2641 225838465 225838299 2.460000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G468400 chr3A 701217247 701220331 3084 True 5698.0 5698 100.000000 1 3085 1 chr3A.!!$R1 3084
1 TraesCS3A01G468400 chr3A 735980910 735981617 707 True 623.0 623 82.560000 1362 2072 1 chr3A.!!$R3 710
2 TraesCS3A01G468400 chr3A 735975379 735976095 716 True 621.0 621 82.410000 1358 2074 1 chr3A.!!$R2 716
3 TraesCS3A01G468400 chr3A 735846386 735847054 668 False 479.0 479 79.674000 1359 2030 1 chr3A.!!$F1 671
4 TraesCS3A01G468400 chr3B 755805359 755806913 1554 False 1999.0 1999 89.824000 658 2239 1 chr3B.!!$F1 1581
5 TraesCS3A01G468400 chr3B 759351918 759352501 583 False 771.0 771 90.598000 2494 3073 1 chr3B.!!$F2 579
6 TraesCS3A01G468400 chr3B 812726053 812726760 707 True 556.0 556 80.952000 1362 2072 1 chr3B.!!$R2 710
7 TraesCS3A01G468400 chr3D 566078555 566081917 3362 False 804.0 1954 88.726667 393 2301 3 chr3D.!!$F1 1908
8 TraesCS3A01G468400 chr3D 604967389 604968076 687 True 608.0 608 82.684000 1358 2048 1 chr3D.!!$R1 690
9 TraesCS3A01G468400 chr3D 605026121 605026832 711 True 558.0 558 80.839000 1358 2072 1 chr3D.!!$R2 714
10 TraesCS3A01G468400 chr1B 93855759 93856339 580 True 773.0 773 90.769000 2495 3073 1 chr1B.!!$R1 578
11 TraesCS3A01G468400 chr1B 14138310 14138995 685 False 477.0 477 79.454000 1361 2049 1 chr1B.!!$F1 688
12 TraesCS3A01G468400 chr7A 389344720 389345301 581 False 769.0 769 90.582000 2494 3073 1 chr7A.!!$F1 579
13 TraesCS3A01G468400 chr5D 70887639 70888222 583 True 765.0 765 90.427000 2493 3073 1 chr5D.!!$R1 580
14 TraesCS3A01G468400 chr4D 419211841 419212414 573 True 761.0 761 90.582000 2494 3073 1 chr4D.!!$R1 579
15 TraesCS3A01G468400 chr4D 485042334 485043333 999 True 301.5 501 86.805000 1199 2072 2 chr4D.!!$R5 873
16 TraesCS3A01G468400 chr1A 504658852 504659434 582 False 758.0 758 90.240000 2494 3073 1 chr1A.!!$F2 579
17 TraesCS3A01G468400 chr1A 11555172 11555857 685 False 455.0 455 78.970000 1361 2049 1 chr1A.!!$F1 688
18 TraesCS3A01G468400 chr4B 517124615 517125188 573 True 754.0 754 90.306000 2490 3073 1 chr4B.!!$R2 583
19 TraesCS3A01G468400 chr2B 443147305 443147939 634 True 270.0 270 75.115000 1395 2029 1 chr2B.!!$R1 634
20 TraesCS3A01G468400 chr2B 443224081 443224715 634 False 270.0 270 75.115000 1395 2029 1 chr2B.!!$F1 634
21 TraesCS3A01G468400 chr1D 9745190 9745875 685 False 422.0 422 78.174000 1361 2049 1 chr1D.!!$F1 688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 2064 0.031721 ACGTTCCAGACAGAACCGTC 59.968 55.0 0.0 0.0 42.63 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2458 4136 0.037419 GGCGGGCACATGTTTGAATT 60.037 50.0 0.0 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 9.860898 AAATGTTTTTCTGCTCAGATTAATACC 57.139 29.630 0.00 0.00 37.29 2.73
68 69 7.072177 TGTTTTTCTGCTCAGATTAATACCG 57.928 36.000 0.00 0.00 37.29 4.02
69 70 6.093495 TGTTTTTCTGCTCAGATTAATACCGG 59.907 38.462 0.00 0.00 37.29 5.28
70 71 5.607939 TTTCTGCTCAGATTAATACCGGA 57.392 39.130 9.46 0.00 37.29 5.14
71 72 4.585955 TCTGCTCAGATTAATACCGGAC 57.414 45.455 9.46 0.00 31.41 4.79
72 73 4.215908 TCTGCTCAGATTAATACCGGACT 58.784 43.478 9.46 0.00 31.41 3.85
73 74 4.649674 TCTGCTCAGATTAATACCGGACTT 59.350 41.667 9.46 3.07 31.41 3.01
74 75 5.128827 TCTGCTCAGATTAATACCGGACTTT 59.871 40.000 9.46 0.33 31.41 2.66
75 76 5.741011 TGCTCAGATTAATACCGGACTTTT 58.259 37.500 9.46 0.00 0.00 2.27
76 77 5.815740 TGCTCAGATTAATACCGGACTTTTC 59.184 40.000 9.46 2.24 0.00 2.29
77 78 6.049790 GCTCAGATTAATACCGGACTTTTCT 58.950 40.000 9.46 4.49 0.00 2.52
78 79 6.539103 GCTCAGATTAATACCGGACTTTTCTT 59.461 38.462 9.46 0.00 0.00 2.52
79 80 7.466050 GCTCAGATTAATACCGGACTTTTCTTG 60.466 40.741 9.46 0.00 0.00 3.02
80 81 7.391620 TCAGATTAATACCGGACTTTTCTTGT 58.608 34.615 9.46 0.00 0.00 3.16
81 82 7.881232 TCAGATTAATACCGGACTTTTCTTGTT 59.119 33.333 9.46 0.00 0.00 2.83
82 83 7.962918 CAGATTAATACCGGACTTTTCTTGTTG 59.037 37.037 9.46 0.00 0.00 3.33
83 84 7.664318 AGATTAATACCGGACTTTTCTTGTTGT 59.336 33.333 9.46 0.00 0.00 3.32
84 85 5.684550 AATACCGGACTTTTCTTGTTGTC 57.315 39.130 9.46 0.00 0.00 3.18
85 86 2.993937 ACCGGACTTTTCTTGTTGTCA 58.006 42.857 9.46 0.00 0.00 3.58
86 87 3.349022 ACCGGACTTTTCTTGTTGTCAA 58.651 40.909 9.46 0.00 0.00 3.18
87 88 3.951680 ACCGGACTTTTCTTGTTGTCAAT 59.048 39.130 9.46 0.00 32.82 2.57
88 89 4.401202 ACCGGACTTTTCTTGTTGTCAATT 59.599 37.500 9.46 0.00 32.82 2.32
89 90 5.105513 ACCGGACTTTTCTTGTTGTCAATTT 60.106 36.000 9.46 0.00 32.82 1.82
90 91 5.810074 CCGGACTTTTCTTGTTGTCAATTTT 59.190 36.000 0.00 0.00 32.82 1.82
91 92 6.312672 CCGGACTTTTCTTGTTGTCAATTTTT 59.687 34.615 0.00 0.00 32.82 1.94
127 128 5.902613 CCAATATGGCAAGTTTCTCTGAA 57.097 39.130 0.00 0.00 0.00 3.02
128 129 6.271488 CCAATATGGCAAGTTTCTCTGAAA 57.729 37.500 0.00 0.00 0.00 2.69
129 130 6.690530 CCAATATGGCAAGTTTCTCTGAAAA 58.309 36.000 0.00 0.00 0.00 2.29
130 131 7.153985 CCAATATGGCAAGTTTCTCTGAAAAA 58.846 34.615 0.00 0.00 0.00 1.94
131 132 7.330208 CCAATATGGCAAGTTTCTCTGAAAAAG 59.670 37.037 0.00 0.00 0.00 2.27
132 133 5.859205 ATGGCAAGTTTCTCTGAAAAAGT 57.141 34.783 0.00 0.00 0.00 2.66
133 134 4.997565 TGGCAAGTTTCTCTGAAAAAGTG 58.002 39.130 0.00 0.00 0.00 3.16
134 135 4.462483 TGGCAAGTTTCTCTGAAAAAGTGT 59.538 37.500 0.00 0.00 0.00 3.55
135 136 5.037385 GGCAAGTTTCTCTGAAAAAGTGTC 58.963 41.667 0.00 0.00 0.00 3.67
136 137 5.393027 GGCAAGTTTCTCTGAAAAAGTGTCA 60.393 40.000 0.00 0.00 0.00 3.58
137 138 5.741040 GCAAGTTTCTCTGAAAAAGTGTCAG 59.259 40.000 0.00 0.00 43.28 3.51
167 168 7.856145 TTTTTGGCTTTTCTTGAATTGCTAA 57.144 28.000 0.00 5.82 0.00 3.09
168 169 8.449251 TTTTTGGCTTTTCTTGAATTGCTAAT 57.551 26.923 7.33 0.00 0.00 1.73
169 170 9.553064 TTTTTGGCTTTTCTTGAATTGCTAATA 57.447 25.926 7.33 2.74 0.00 0.98
170 171 9.723601 TTTTGGCTTTTCTTGAATTGCTAATAT 57.276 25.926 7.33 0.00 0.00 1.28
171 172 9.723601 TTTGGCTTTTCTTGAATTGCTAATATT 57.276 25.926 0.00 0.00 0.00 1.28
172 173 9.723601 TTGGCTTTTCTTGAATTGCTAATATTT 57.276 25.926 0.00 0.00 0.00 1.40
173 174 9.723601 TGGCTTTTCTTGAATTGCTAATATTTT 57.276 25.926 0.00 0.00 0.00 1.82
180 181 8.906867 TCTTGAATTGCTAATATTTTCCTCTGG 58.093 33.333 0.00 0.00 0.00 3.86
181 182 8.821686 TTGAATTGCTAATATTTTCCTCTGGA 57.178 30.769 0.00 0.00 0.00 3.86
182 183 9.425248 TTGAATTGCTAATATTTTCCTCTGGAT 57.575 29.630 0.00 0.00 0.00 3.41
183 184 9.425248 TGAATTGCTAATATTTTCCTCTGGATT 57.575 29.630 0.00 0.00 0.00 3.01
209 210 7.921786 TTTTATCAGGTTCATCTACAACCAG 57.078 36.000 4.48 0.00 45.20 4.00
210 211 3.981071 TCAGGTTCATCTACAACCAGG 57.019 47.619 4.48 0.00 45.20 4.45
211 212 3.248024 TCAGGTTCATCTACAACCAGGT 58.752 45.455 4.48 0.00 45.20 4.00
212 213 3.007940 TCAGGTTCATCTACAACCAGGTG 59.992 47.826 0.00 0.00 45.20 4.00
213 214 2.979678 AGGTTCATCTACAACCAGGTGT 59.020 45.455 0.00 0.00 45.20 4.16
214 215 4.020573 CAGGTTCATCTACAACCAGGTGTA 60.021 45.833 0.00 0.00 45.20 2.90
215 216 4.020485 AGGTTCATCTACAACCAGGTGTAC 60.020 45.833 0.00 0.00 45.20 2.90
216 217 4.251268 GTTCATCTACAACCAGGTGTACC 58.749 47.826 0.00 0.00 32.75 3.34
217 218 2.835764 TCATCTACAACCAGGTGTACCC 59.164 50.000 0.00 0.00 36.42 3.69
227 228 1.497161 AGGTGTACCCTGGTATGAGC 58.503 55.000 0.00 0.13 44.08 4.26
228 229 1.200519 GGTGTACCCTGGTATGAGCA 58.799 55.000 0.00 0.00 32.82 4.26
229 230 1.557832 GGTGTACCCTGGTATGAGCAA 59.442 52.381 0.00 0.00 32.82 3.91
230 231 2.172717 GGTGTACCCTGGTATGAGCAAT 59.827 50.000 0.00 0.00 32.82 3.56
231 232 3.206150 GTGTACCCTGGTATGAGCAATG 58.794 50.000 0.00 0.00 32.82 2.82
232 233 2.222027 GTACCCTGGTATGAGCAATGC 58.778 52.381 0.00 0.00 32.82 3.56
233 234 0.921896 ACCCTGGTATGAGCAATGCT 59.078 50.000 7.79 7.79 43.88 3.79
234 235 2.126882 ACCCTGGTATGAGCAATGCTA 58.873 47.619 8.12 0.00 39.88 3.49
235 236 2.158755 ACCCTGGTATGAGCAATGCTAC 60.159 50.000 8.12 2.41 39.88 3.58
236 237 2.158769 CCCTGGTATGAGCAATGCTACA 60.159 50.000 8.12 8.77 39.88 2.74
237 238 3.136763 CCTGGTATGAGCAATGCTACAG 58.863 50.000 8.12 11.38 39.88 2.74
238 239 2.547211 CTGGTATGAGCAATGCTACAGC 59.453 50.000 8.12 6.59 39.88 4.40
252 253 2.787680 GCTACAGCAACGGAGTATTACG 59.212 50.000 0.00 0.00 45.00 3.18
253 254 2.288961 ACAGCAACGGAGTATTACGG 57.711 50.000 0.00 0.00 45.00 4.02
254 255 1.134907 ACAGCAACGGAGTATTACGGG 60.135 52.381 0.00 0.00 45.00 5.28
255 256 1.135527 CAGCAACGGAGTATTACGGGA 59.864 52.381 0.00 0.00 45.00 5.14
256 257 1.135721 AGCAACGGAGTATTACGGGAC 59.864 52.381 0.00 0.00 45.00 4.46
257 258 1.803998 GCAACGGAGTATTACGGGACC 60.804 57.143 0.00 0.00 45.00 4.46
258 259 1.477700 CAACGGAGTATTACGGGACCA 59.522 52.381 0.00 0.00 45.00 4.02
259 260 2.077687 ACGGAGTATTACGGGACCAT 57.922 50.000 0.00 0.00 41.94 3.55
260 261 2.391678 ACGGAGTATTACGGGACCATT 58.608 47.619 0.00 0.00 41.94 3.16
261 262 3.565307 ACGGAGTATTACGGGACCATTA 58.435 45.455 0.00 0.00 41.94 1.90
262 263 3.319122 ACGGAGTATTACGGGACCATTAC 59.681 47.826 0.00 0.00 41.94 1.89
263 264 3.610114 CGGAGTATTACGGGACCATTACG 60.610 52.174 0.00 0.00 0.00 3.18
264 265 3.305608 GGAGTATTACGGGACCATTACGG 60.306 52.174 0.00 0.00 42.50 4.02
265 266 2.629617 AGTATTACGGGACCATTACGGG 59.370 50.000 0.00 0.00 40.22 5.28
266 267 0.107268 ATTACGGGACCATTACGGGC 59.893 55.000 0.00 0.00 45.59 6.13
267 268 0.977108 TTACGGGACCATTACGGGCT 60.977 55.000 0.00 0.00 45.62 5.19
268 269 0.106268 TACGGGACCATTACGGGCTA 60.106 55.000 0.00 0.00 45.62 3.93
269 270 0.977108 ACGGGACCATTACGGGCTAA 60.977 55.000 0.00 0.00 45.62 3.09
270 271 0.395312 CGGGACCATTACGGGCTAAT 59.605 55.000 0.00 0.00 45.62 1.73
271 272 1.607251 CGGGACCATTACGGGCTAATC 60.607 57.143 0.00 0.00 45.62 1.75
272 273 1.697982 GGGACCATTACGGGCTAATCT 59.302 52.381 0.00 0.00 45.62 2.40
273 274 2.105993 GGGACCATTACGGGCTAATCTT 59.894 50.000 0.00 0.00 45.62 2.40
274 275 3.139077 GGACCATTACGGGCTAATCTTG 58.861 50.000 0.00 0.00 45.62 3.02
275 276 3.181458 GGACCATTACGGGCTAATCTTGA 60.181 47.826 0.00 0.00 45.62 3.02
276 277 3.805207 ACCATTACGGGCTAATCTTGAC 58.195 45.455 0.00 0.00 40.22 3.18
277 278 3.199071 ACCATTACGGGCTAATCTTGACA 59.801 43.478 0.00 0.00 40.22 3.58
278 279 4.141482 ACCATTACGGGCTAATCTTGACAT 60.141 41.667 0.00 0.00 40.22 3.06
279 280 4.214119 CCATTACGGGCTAATCTTGACATG 59.786 45.833 0.00 0.00 0.00 3.21
280 281 2.332063 ACGGGCTAATCTTGACATGG 57.668 50.000 0.00 0.00 0.00 3.66
281 282 0.947244 CGGGCTAATCTTGACATGGC 59.053 55.000 0.00 0.00 0.00 4.40
282 283 1.746861 CGGGCTAATCTTGACATGGCA 60.747 52.381 0.00 0.00 0.00 4.92
283 284 1.952296 GGGCTAATCTTGACATGGCAG 59.048 52.381 0.00 0.00 0.00 4.85
284 285 2.648059 GGCTAATCTTGACATGGCAGT 58.352 47.619 0.00 0.00 0.00 4.40
285 286 3.019564 GGCTAATCTTGACATGGCAGTT 58.980 45.455 0.00 1.07 0.00 3.16
286 287 4.199310 GGCTAATCTTGACATGGCAGTTA 58.801 43.478 0.00 2.28 0.00 2.24
287 288 4.823989 GGCTAATCTTGACATGGCAGTTAT 59.176 41.667 0.00 0.00 0.00 1.89
288 289 5.049129 GGCTAATCTTGACATGGCAGTTATC 60.049 44.000 0.00 0.00 0.00 1.75
289 290 5.762218 GCTAATCTTGACATGGCAGTTATCT 59.238 40.000 0.00 0.00 0.00 1.98
290 291 6.931281 GCTAATCTTGACATGGCAGTTATCTA 59.069 38.462 0.00 0.00 0.00 1.98
291 292 7.605691 GCTAATCTTGACATGGCAGTTATCTAT 59.394 37.037 0.00 0.00 0.00 1.98
292 293 9.499479 CTAATCTTGACATGGCAGTTATCTATT 57.501 33.333 0.00 0.00 0.00 1.73
293 294 7.741027 ATCTTGACATGGCAGTTATCTATTG 57.259 36.000 0.00 0.00 0.00 1.90
294 295 6.057533 TCTTGACATGGCAGTTATCTATTGG 58.942 40.000 0.00 0.00 0.00 3.16
295 296 5.628797 TGACATGGCAGTTATCTATTGGA 57.371 39.130 0.00 0.00 0.00 3.53
296 297 6.191657 TGACATGGCAGTTATCTATTGGAT 57.808 37.500 0.00 0.00 38.38 3.41
297 298 6.604171 TGACATGGCAGTTATCTATTGGATT 58.396 36.000 0.00 0.00 35.98 3.01
298 299 7.744733 TGACATGGCAGTTATCTATTGGATTA 58.255 34.615 0.00 0.00 35.98 1.75
299 300 7.879677 TGACATGGCAGTTATCTATTGGATTAG 59.120 37.037 0.00 0.00 35.98 1.73
300 301 7.170965 ACATGGCAGTTATCTATTGGATTAGG 58.829 38.462 0.00 0.00 35.98 2.69
301 302 6.126863 TGGCAGTTATCTATTGGATTAGGG 57.873 41.667 0.00 0.00 35.98 3.53
302 303 5.014123 TGGCAGTTATCTATTGGATTAGGGG 59.986 44.000 0.00 0.00 35.98 4.79
303 304 5.501156 GCAGTTATCTATTGGATTAGGGGG 58.499 45.833 0.00 0.00 35.98 5.40
333 334 1.382629 ACCCGGGTGAAAATCAGGG 59.617 57.895 29.69 0.00 44.17 4.45
334 335 1.379843 CCCGGGTGAAAATCAGGGG 60.380 63.158 14.18 0.00 35.36 4.79
335 336 1.379843 CCGGGTGAAAATCAGGGGG 60.380 63.158 0.00 0.00 0.00 5.40
352 353 1.981495 GGGGGAGGAGAGATTGTATGG 59.019 57.143 0.00 0.00 0.00 2.74
353 354 2.427889 GGGGGAGGAGAGATTGTATGGA 60.428 54.545 0.00 0.00 0.00 3.41
354 355 3.318313 GGGGAGGAGAGATTGTATGGAA 58.682 50.000 0.00 0.00 0.00 3.53
355 356 3.716872 GGGGAGGAGAGATTGTATGGAAA 59.283 47.826 0.00 0.00 0.00 3.13
356 357 4.202409 GGGGAGGAGAGATTGTATGGAAAG 60.202 50.000 0.00 0.00 0.00 2.62
357 358 4.410555 GGGAGGAGAGATTGTATGGAAAGT 59.589 45.833 0.00 0.00 0.00 2.66
358 359 5.454045 GGGAGGAGAGATTGTATGGAAAGTC 60.454 48.000 0.00 0.00 0.00 3.01
359 360 5.269505 AGGAGAGATTGTATGGAAAGTCG 57.730 43.478 0.00 0.00 0.00 4.18
360 361 3.804873 GGAGAGATTGTATGGAAAGTCGC 59.195 47.826 0.00 0.00 0.00 5.19
361 362 3.448686 AGAGATTGTATGGAAAGTCGCG 58.551 45.455 0.00 0.00 0.00 5.87
362 363 3.119101 AGAGATTGTATGGAAAGTCGCGT 60.119 43.478 5.77 0.00 0.00 6.01
363 364 4.097437 AGAGATTGTATGGAAAGTCGCGTA 59.903 41.667 5.77 0.00 0.00 4.42
364 365 4.751060 AGATTGTATGGAAAGTCGCGTAA 58.249 39.130 5.77 0.00 0.00 3.18
365 366 5.357257 AGATTGTATGGAAAGTCGCGTAAT 58.643 37.500 5.77 0.00 0.00 1.89
366 367 4.850859 TTGTATGGAAAGTCGCGTAATG 57.149 40.909 5.77 0.00 0.00 1.90
367 368 3.191669 TGTATGGAAAGTCGCGTAATGG 58.808 45.455 5.77 0.00 0.00 3.16
368 369 2.396590 ATGGAAAGTCGCGTAATGGT 57.603 45.000 5.77 0.00 0.00 3.55
369 370 1.717194 TGGAAAGTCGCGTAATGGTC 58.283 50.000 5.77 0.00 0.00 4.02
370 371 1.004595 GGAAAGTCGCGTAATGGTCC 58.995 55.000 5.77 3.25 0.00 4.46
371 372 1.004595 GAAAGTCGCGTAATGGTCCC 58.995 55.000 5.77 0.00 0.00 4.46
372 373 0.738412 AAAGTCGCGTAATGGTCCCG 60.738 55.000 5.77 0.00 0.00 5.14
373 374 1.880819 AAGTCGCGTAATGGTCCCGT 61.881 55.000 5.77 0.00 0.00 5.28
374 375 2.162754 GTCGCGTAATGGTCCCGTG 61.163 63.158 5.77 0.00 0.00 4.94
375 376 2.125832 CGCGTAATGGTCCCGTGT 60.126 61.111 0.00 0.00 0.00 4.49
376 377 2.449525 CGCGTAATGGTCCCGTGTG 61.450 63.158 0.00 0.00 0.00 3.82
377 378 1.375013 GCGTAATGGTCCCGTGTGT 60.375 57.895 0.00 0.00 0.00 3.72
378 379 0.952010 GCGTAATGGTCCCGTGTGTT 60.952 55.000 0.00 0.00 0.00 3.32
379 380 1.515081 CGTAATGGTCCCGTGTGTTT 58.485 50.000 0.00 0.00 0.00 2.83
380 381 2.686235 CGTAATGGTCCCGTGTGTTTA 58.314 47.619 0.00 0.00 0.00 2.01
381 382 2.669434 CGTAATGGTCCCGTGTGTTTAG 59.331 50.000 0.00 0.00 0.00 1.85
382 383 1.530323 AATGGTCCCGTGTGTTTAGC 58.470 50.000 0.00 0.00 0.00 3.09
383 384 0.398696 ATGGTCCCGTGTGTTTAGCA 59.601 50.000 0.00 0.00 0.00 3.49
384 385 0.398696 TGGTCCCGTGTGTTTAGCAT 59.601 50.000 0.00 0.00 0.00 3.79
385 386 1.202830 TGGTCCCGTGTGTTTAGCATT 60.203 47.619 0.00 0.00 0.00 3.56
386 387 1.883926 GGTCCCGTGTGTTTAGCATTT 59.116 47.619 0.00 0.00 0.00 2.32
387 388 2.295070 GGTCCCGTGTGTTTAGCATTTT 59.705 45.455 0.00 0.00 0.00 1.82
388 389 3.561503 GTCCCGTGTGTTTAGCATTTTC 58.438 45.455 0.00 0.00 0.00 2.29
389 390 2.224549 TCCCGTGTGTTTAGCATTTTCG 59.775 45.455 0.00 0.00 0.00 3.46
390 391 2.224549 CCCGTGTGTTTAGCATTTTCGA 59.775 45.455 0.00 0.00 0.00 3.71
391 392 3.223157 CCGTGTGTTTAGCATTTTCGAC 58.777 45.455 0.00 0.00 0.00 4.20
397 398 2.817844 GTTTAGCATTTTCGACCCTGGT 59.182 45.455 0.00 0.00 0.00 4.00
418 419 5.820423 TGGTATTTCCCTATTGTCGACAATG 59.180 40.000 40.58 30.94 40.00 2.82
419 420 6.053005 GGTATTTCCCTATTGTCGACAATGA 58.947 40.000 40.58 30.21 45.34 2.57
444 446 5.305902 TCCTACATGTAACTGGTCAACTGAA 59.694 40.000 7.06 0.00 0.00 3.02
449 451 5.042463 TGTAACTGGTCAACTGAATTCCA 57.958 39.130 2.27 0.00 0.00 3.53
457 459 4.507756 GGTCAACTGAATTCCAGCAAAAAC 59.492 41.667 2.27 0.00 46.81 2.43
458 460 5.108517 GTCAACTGAATTCCAGCAAAAACA 58.891 37.500 2.27 0.00 46.81 2.83
459 461 5.580297 GTCAACTGAATTCCAGCAAAAACAA 59.420 36.000 2.27 0.00 46.81 2.83
460 462 5.580297 TCAACTGAATTCCAGCAAAAACAAC 59.420 36.000 2.27 0.00 46.81 3.32
461 463 5.343307 ACTGAATTCCAGCAAAAACAACT 57.657 34.783 2.27 0.00 46.81 3.16
462 464 5.351458 ACTGAATTCCAGCAAAAACAACTC 58.649 37.500 2.27 0.00 46.81 3.01
463 465 5.105392 ACTGAATTCCAGCAAAAACAACTCA 60.105 36.000 2.27 0.00 46.81 3.41
464 466 5.350633 TGAATTCCAGCAAAAACAACTCAG 58.649 37.500 2.27 0.00 0.00 3.35
465 467 5.105392 TGAATTCCAGCAAAAACAACTCAGT 60.105 36.000 2.27 0.00 0.00 3.41
466 468 6.096141 TGAATTCCAGCAAAAACAACTCAGTA 59.904 34.615 2.27 0.00 0.00 2.74
491 495 5.584913 ACTGAGAAATAGGAAGTCAGAGGA 58.415 41.667 4.72 0.00 38.41 3.71
497 501 1.638529 AGGAAGTCAGAGGAGTGTGG 58.361 55.000 0.00 0.00 0.00 4.17
500 504 2.368875 GGAAGTCAGAGGAGTGTGGAAA 59.631 50.000 0.00 0.00 0.00 3.13
501 505 3.008485 GGAAGTCAGAGGAGTGTGGAAAT 59.992 47.826 0.00 0.00 0.00 2.17
502 506 4.223032 GGAAGTCAGAGGAGTGTGGAAATA 59.777 45.833 0.00 0.00 0.00 1.40
504 508 5.350504 AGTCAGAGGAGTGTGGAAATATG 57.649 43.478 0.00 0.00 0.00 1.78
506 510 5.485353 AGTCAGAGGAGTGTGGAAATATGAA 59.515 40.000 0.00 0.00 0.00 2.57
507 511 5.814705 GTCAGAGGAGTGTGGAAATATGAAG 59.185 44.000 0.00 0.00 0.00 3.02
508 512 5.485353 TCAGAGGAGTGTGGAAATATGAAGT 59.515 40.000 0.00 0.00 0.00 3.01
509 513 5.583854 CAGAGGAGTGTGGAAATATGAAGTG 59.416 44.000 0.00 0.00 0.00 3.16
510 514 5.485353 AGAGGAGTGTGGAAATATGAAGTGA 59.515 40.000 0.00 0.00 0.00 3.41
511 515 6.013379 AGAGGAGTGTGGAAATATGAAGTGAA 60.013 38.462 0.00 0.00 0.00 3.18
512 516 6.542821 AGGAGTGTGGAAATATGAAGTGAAA 58.457 36.000 0.00 0.00 0.00 2.69
513 517 7.177878 AGGAGTGTGGAAATATGAAGTGAAAT 58.822 34.615 0.00 0.00 0.00 2.17
514 518 7.337942 AGGAGTGTGGAAATATGAAGTGAAATC 59.662 37.037 0.00 0.00 0.00 2.17
549 553 4.874528 GAGAGCTCCATGGGCTTC 57.125 61.111 23.41 18.52 40.40 3.86
575 579 4.416738 GCCCCTCGCTCAAAGCCT 62.417 66.667 0.00 0.00 38.18 4.58
578 582 2.437359 CCTCGCTCAAAGCCTGGG 60.437 66.667 0.00 0.00 38.18 4.45
606 2046 2.494530 TTTGGAGCCCACCGCAAAC 61.495 57.895 0.00 0.00 41.38 2.93
612 2052 2.902846 CCCACCGCAAACGTTCCA 60.903 61.111 0.00 0.00 37.70 3.53
618 2058 0.878523 CCGCAAACGTTCCAGACAGA 60.879 55.000 0.00 0.00 37.70 3.41
620 2060 1.332904 CGCAAACGTTCCAGACAGAAC 60.333 52.381 0.00 0.00 42.25 3.01
621 2061 1.002792 GCAAACGTTCCAGACAGAACC 60.003 52.381 0.00 0.00 42.63 3.62
623 2063 0.462789 AACGTTCCAGACAGAACCGT 59.537 50.000 0.00 0.00 42.63 4.83
624 2064 0.031721 ACGTTCCAGACAGAACCGTC 59.968 55.000 0.00 0.00 42.63 4.79
625 2065 0.666577 CGTTCCAGACAGAACCGTCC 60.667 60.000 0.00 0.00 42.63 4.79
626 2066 0.391597 GTTCCAGACAGAACCGTCCA 59.608 55.000 0.00 0.00 40.25 4.02
627 2067 1.002087 GTTCCAGACAGAACCGTCCAT 59.998 52.381 0.00 0.00 40.25 3.41
628 2068 0.608130 TCCAGACAGAACCGTCCATG 59.392 55.000 0.00 0.00 36.52 3.66
629 2069 0.391661 CCAGACAGAACCGTCCATGG 60.392 60.000 4.97 4.97 36.52 3.66
630 2070 1.021390 CAGACAGAACCGTCCATGGC 61.021 60.000 6.96 0.96 36.52 4.40
631 2071 2.047274 ACAGAACCGTCCATGGCG 60.047 61.111 18.11 18.11 0.00 5.69
637 2077 2.111043 CCGTCCATGGCGGCTATT 59.889 61.111 27.07 0.00 42.82 1.73
639 2079 1.101049 CCGTCCATGGCGGCTATTTT 61.101 55.000 27.07 0.00 42.82 1.82
640 2080 0.307760 CGTCCATGGCGGCTATTTTC 59.692 55.000 17.50 0.00 33.14 2.29
641 2081 1.680338 GTCCATGGCGGCTATTTTCT 58.320 50.000 11.43 0.00 33.14 2.52
642 2082 1.604278 GTCCATGGCGGCTATTTTCTC 59.396 52.381 11.43 0.00 33.14 2.87
644 2084 2.023673 CCATGGCGGCTATTTTCTCAA 58.976 47.619 11.43 0.00 0.00 3.02
645 2085 2.426738 CCATGGCGGCTATTTTCTCAAA 59.573 45.455 11.43 0.00 0.00 2.69
646 2086 3.119173 CCATGGCGGCTATTTTCTCAAAA 60.119 43.478 11.43 0.00 34.41 2.44
647 2087 4.493547 CATGGCGGCTATTTTCTCAAAAA 58.506 39.130 11.43 0.00 38.66 1.94
701 2192 2.907696 TGATTAGGACGGTCAAAAGGGA 59.092 45.455 10.76 0.00 0.00 4.20
728 2224 0.598562 CACACACGTAGCTCCTCAGT 59.401 55.000 0.00 0.00 0.00 3.41
736 2232 3.190953 ACGTAGCTCCTCAGTAAGTCAAC 59.809 47.826 0.00 0.00 0.00 3.18
737 2233 3.427773 CGTAGCTCCTCAGTAAGTCAACC 60.428 52.174 0.00 0.00 0.00 3.77
762 2258 0.668706 CTCCAAGTGCGGTCTCTGTG 60.669 60.000 0.00 0.00 0.00 3.66
763 2259 2.320587 CCAAGTGCGGTCTCTGTGC 61.321 63.158 0.00 0.00 0.00 4.57
764 2260 2.356313 AAGTGCGGTCTCTGTGCG 60.356 61.111 0.00 0.00 0.00 5.34
916 2415 4.510571 GGGGAAGAACGTCTGCTATAAAA 58.489 43.478 0.00 0.00 0.00 1.52
956 2455 1.279025 AACACCTCACCACCACCACT 61.279 55.000 0.00 0.00 0.00 4.00
965 2464 1.292223 CACCACCACTACAGGACGG 59.708 63.158 0.00 0.00 0.00 4.79
976 2475 3.474570 AGGACGGCCCATCTGAGC 61.475 66.667 1.76 0.00 37.41 4.26
986 2493 1.271934 CCCATCTGAGCAGATCTACCG 59.728 57.143 9.92 0.00 45.78 4.02
989 2496 1.974265 TCTGAGCAGATCTACCGAGG 58.026 55.000 0.00 0.00 31.41 4.63
994 2501 1.215673 AGCAGATCTACCGAGGAGGAA 59.784 52.381 0.00 0.00 45.00 3.36
997 2504 2.882137 CAGATCTACCGAGGAGGAAGAC 59.118 54.545 0.00 0.00 45.00 3.01
999 2506 0.107312 TCTACCGAGGAGGAAGACCG 60.107 60.000 0.00 0.00 45.00 4.79
1338 2987 6.426633 TGTGTATGTGGTGTCATTGACTTTAG 59.573 38.462 17.26 0.00 33.15 1.85
1341 2990 6.959639 ATGTGGTGTCATTGACTTTAGTTT 57.040 33.333 17.26 0.00 33.15 2.66
1342 2991 6.767524 TGTGGTGTCATTGACTTTAGTTTT 57.232 33.333 17.26 0.00 33.15 2.43
1343 2992 6.559810 TGTGGTGTCATTGACTTTAGTTTTG 58.440 36.000 17.26 0.00 33.15 2.44
1344 2993 5.458779 GTGGTGTCATTGACTTTAGTTTTGC 59.541 40.000 17.26 0.00 33.15 3.68
1345 2994 4.982295 GGTGTCATTGACTTTAGTTTTGCC 59.018 41.667 17.26 2.02 33.15 4.52
1346 2995 4.675114 GTGTCATTGACTTTAGTTTTGCCG 59.325 41.667 17.26 0.00 33.15 5.69
1347 2996 3.668656 GTCATTGACTTTAGTTTTGCCGC 59.331 43.478 9.59 0.00 0.00 6.53
1348 2997 2.392933 TTGACTTTAGTTTTGCCGCG 57.607 45.000 0.00 0.00 0.00 6.46
1349 2998 1.301423 TGACTTTAGTTTTGCCGCGT 58.699 45.000 4.92 0.00 0.00 6.01
1350 2999 1.262151 TGACTTTAGTTTTGCCGCGTC 59.738 47.619 4.92 0.00 0.00 5.19
1351 3000 1.529865 GACTTTAGTTTTGCCGCGTCT 59.470 47.619 4.92 0.00 0.00 4.18
1352 3001 1.263217 ACTTTAGTTTTGCCGCGTCTG 59.737 47.619 4.92 0.00 0.00 3.51
1886 3547 2.039746 TGACATCGGGTTCAAGTTCCAT 59.960 45.455 0.00 0.00 0.00 3.41
2003 3667 0.370273 GTGCGCCAAACTATGTCTCG 59.630 55.000 4.18 0.00 0.00 4.04
2076 3746 1.340405 GCATCTCCATGGTCACCAAGT 60.340 52.381 12.58 0.00 36.95 3.16
2090 3760 3.056821 TCACCAAGTCCGACTGAACTATG 60.057 47.826 0.65 0.00 0.00 2.23
2096 3767 5.339008 AGTCCGACTGAACTATGCAATAA 57.661 39.130 0.00 0.00 0.00 1.40
2097 3768 5.352284 AGTCCGACTGAACTATGCAATAAG 58.648 41.667 0.00 0.00 0.00 1.73
2119 3790 1.502163 GCAGACGTGAGCTTTGCAGT 61.502 55.000 0.00 0.00 35.78 4.40
2129 3800 1.518903 GCTTTGCAGTCACCTCCACC 61.519 60.000 0.00 0.00 0.00 4.61
2148 3819 1.112113 CGCACTACTACACCCCTGAT 58.888 55.000 0.00 0.00 0.00 2.90
2153 3824 3.513912 CACTACTACACCCCTGATCACAA 59.486 47.826 0.00 0.00 0.00 3.33
2162 3833 2.354003 CCCCTGATCACAAAATGGCAAC 60.354 50.000 0.00 0.00 0.00 4.17
2178 3849 2.126467 GCAACAAATTTCTGCTTCGCA 58.874 42.857 12.53 0.00 36.92 5.10
2232 3903 9.586435 GGATGGAAATAAAAATGTAACTGAAGG 57.414 33.333 0.00 0.00 0.00 3.46
2239 3910 6.783708 AAAAATGTAACTGAAGGTCAACCA 57.216 33.333 1.33 0.00 38.89 3.67
2240 3911 6.783708 AAAATGTAACTGAAGGTCAACCAA 57.216 33.333 1.33 0.00 38.89 3.67
2241 3912 6.783708 AAATGTAACTGAAGGTCAACCAAA 57.216 33.333 1.33 0.00 38.89 3.28
2242 3913 6.783708 AATGTAACTGAAGGTCAACCAAAA 57.216 33.333 1.33 0.00 38.89 2.44
2243 3914 6.976934 ATGTAACTGAAGGTCAACCAAAAT 57.023 33.333 1.33 0.00 38.89 1.82
2244 3915 6.783708 TGTAACTGAAGGTCAACCAAAATT 57.216 33.333 1.33 0.00 38.89 1.82
2246 3917 7.262048 TGTAACTGAAGGTCAACCAAAATTTC 58.738 34.615 1.33 0.00 38.89 2.17
2301 3979 4.040952 CCCTCTGGTCAGGTTTATAGGATG 59.959 50.000 0.00 0.00 0.00 3.51
2302 3980 4.656112 CCTCTGGTCAGGTTTATAGGATGT 59.344 45.833 0.00 0.00 0.00 3.06
2303 3981 5.221541 CCTCTGGTCAGGTTTATAGGATGTC 60.222 48.000 0.00 0.00 0.00 3.06
2304 3982 5.277250 TCTGGTCAGGTTTATAGGATGTCA 58.723 41.667 0.00 0.00 0.00 3.58
2305 3983 5.724370 TCTGGTCAGGTTTATAGGATGTCAA 59.276 40.000 0.00 0.00 0.00 3.18
2306 3984 5.741011 TGGTCAGGTTTATAGGATGTCAAC 58.259 41.667 0.00 0.00 0.00 3.18
2307 3985 5.123936 GGTCAGGTTTATAGGATGTCAACC 58.876 45.833 0.00 0.00 37.72 3.77
2308 3986 5.338871 GGTCAGGTTTATAGGATGTCAACCA 60.339 44.000 1.51 0.00 39.59 3.67
2309 3987 6.357367 GTCAGGTTTATAGGATGTCAACCAT 58.643 40.000 1.51 0.00 39.59 3.55
2310 3988 6.260936 GTCAGGTTTATAGGATGTCAACCATG 59.739 42.308 1.51 0.00 39.59 3.66
2311 3989 5.009010 CAGGTTTATAGGATGTCAACCATGC 59.991 44.000 1.51 0.00 41.88 4.06
2312 3990 4.887071 GGTTTATAGGATGTCAACCATGCA 59.113 41.667 1.51 0.00 43.84 3.96
2313 3991 5.221048 GGTTTATAGGATGTCAACCATGCAC 60.221 44.000 1.51 0.00 43.84 4.57
2314 3992 2.022764 TAGGATGTCAACCATGCACG 57.977 50.000 1.51 0.00 43.84 5.34
2315 3993 1.137404 GGATGTCAACCATGCACGC 59.863 57.895 0.00 0.00 41.26 5.34
2316 3994 1.308069 GGATGTCAACCATGCACGCT 61.308 55.000 0.00 0.00 41.26 5.07
2317 3995 0.523072 GATGTCAACCATGCACGCTT 59.477 50.000 0.00 0.00 32.56 4.68
2318 3996 0.241749 ATGTCAACCATGCACGCTTG 59.758 50.000 0.00 0.00 30.69 4.01
2329 4007 1.581934 GCACGCTTGCTGGTATATGA 58.418 50.000 8.12 0.00 46.17 2.15
2330 4008 1.261619 GCACGCTTGCTGGTATATGAC 59.738 52.381 8.12 0.00 46.17 3.06
2331 4009 2.549926 CACGCTTGCTGGTATATGACA 58.450 47.619 0.00 0.00 0.00 3.58
2332 4010 3.133691 CACGCTTGCTGGTATATGACAT 58.866 45.455 0.00 0.00 0.00 3.06
2333 4011 4.306600 CACGCTTGCTGGTATATGACATA 58.693 43.478 0.00 0.00 0.00 2.29
2334 4012 4.931601 CACGCTTGCTGGTATATGACATAT 59.068 41.667 12.51 12.51 0.00 1.78
2335 4013 6.099341 CACGCTTGCTGGTATATGACATATA 58.901 40.000 10.55 10.55 0.00 0.86
2336 4014 6.758416 CACGCTTGCTGGTATATGACATATAT 59.242 38.462 16.38 0.00 30.98 0.86
2337 4015 7.278646 CACGCTTGCTGGTATATGACATATATT 59.721 37.037 16.38 0.00 30.98 1.28
2338 4016 7.278646 ACGCTTGCTGGTATATGACATATATTG 59.721 37.037 16.38 11.21 30.98 1.90
2339 4017 7.492344 CGCTTGCTGGTATATGACATATATTGA 59.508 37.037 16.38 5.15 30.98 2.57
2340 4018 9.334947 GCTTGCTGGTATATGACATATATTGAT 57.665 33.333 16.38 0.00 30.98 2.57
2363 4041 9.307121 TGATTCTTTTATTTTTGCGAAAAGACA 57.693 25.926 16.68 3.44 38.66 3.41
2373 4051 7.667043 TTTTGCGAAAAGACATATACTGAGT 57.333 32.000 0.00 0.00 0.00 3.41
2374 4052 7.667043 TTTGCGAAAAGACATATACTGAGTT 57.333 32.000 0.00 0.00 0.00 3.01
2375 4053 8.766000 TTTGCGAAAAGACATATACTGAGTTA 57.234 30.769 0.00 0.00 0.00 2.24
2376 4054 8.766000 TTGCGAAAAGACATATACTGAGTTAA 57.234 30.769 0.00 0.00 0.00 2.01
2377 4055 8.942338 TGCGAAAAGACATATACTGAGTTAAT 57.058 30.769 0.00 0.00 0.00 1.40
2411 4089 9.796120 TCTTTCAAATAAAGTTTCGAAACATGT 57.204 25.926 35.29 23.80 41.30 3.21
2472 4150 7.596248 ACACAATCTAGAAATTCAAACATGTGC 59.404 33.333 15.77 0.00 37.40 4.57
2473 4151 7.062605 CACAATCTAGAAATTCAAACATGTGCC 59.937 37.037 0.00 0.00 0.00 5.01
2474 4152 5.643379 TCTAGAAATTCAAACATGTGCCC 57.357 39.130 0.00 0.00 0.00 5.36
2475 4153 3.302365 AGAAATTCAAACATGTGCCCG 57.698 42.857 0.00 0.00 0.00 6.13
2476 4154 1.726248 GAAATTCAAACATGTGCCCGC 59.274 47.619 0.00 0.00 0.00 6.13
2477 4155 0.037419 AATTCAAACATGTGCCCGCC 60.037 50.000 0.00 0.00 0.00 6.13
2478 4156 2.211619 ATTCAAACATGTGCCCGCCG 62.212 55.000 0.00 0.00 0.00 6.46
2502 4180 3.693085 GTCGTTCCCATGTCACTACTAGA 59.307 47.826 0.00 0.00 0.00 2.43
2592 4270 1.453015 TGCTGGGCACAAAGAACGT 60.453 52.632 0.00 0.00 31.71 3.99
2614 4292 7.386851 ACGTTATTGGTATAGATTAGCAGCAT 58.613 34.615 0.00 0.00 0.00 3.79
2642 4320 2.088950 TTCTTTGGGCACGCTACTAC 57.911 50.000 0.00 0.00 0.00 2.73
2645 4323 2.165030 TCTTTGGGCACGCTACTACTAC 59.835 50.000 0.00 0.00 0.00 2.73
2651 4333 1.661341 CACGCTACTACTACCTCCGT 58.339 55.000 0.00 0.00 0.00 4.69
2653 4335 1.208052 ACGCTACTACTACCTCCGTCA 59.792 52.381 0.00 0.00 0.00 4.35
2658 4340 3.430042 ACTACTACCTCCGTCAGTTGA 57.570 47.619 0.00 0.00 0.00 3.18
2701 4383 1.005394 CGTGGGTTTGCTAGGACGT 60.005 57.895 0.00 0.00 0.00 4.34
2728 4410 3.724751 GCACTAGAAACATAGTCGTAGCG 59.275 47.826 0.00 0.00 33.68 4.26
2729 4411 4.730035 GCACTAGAAACATAGTCGTAGCGT 60.730 45.833 0.00 0.00 33.68 5.07
2730 4412 4.729086 CACTAGAAACATAGTCGTAGCGTG 59.271 45.833 0.00 0.00 33.68 5.34
2770 4456 2.303549 CTAACCCAGCCCAGCGAGAG 62.304 65.000 0.00 0.00 0.00 3.20
2836 4522 2.440430 TCCTCTTCCTCCCGCGAG 60.440 66.667 8.23 0.00 35.72 5.03
2962 4648 1.074926 GGCCAGATCCTCTCCTCCA 60.075 63.158 0.00 0.00 0.00 3.86
2966 4652 0.105555 CAGATCCTCTCCTCCAGGCT 60.106 60.000 0.00 0.00 34.44 4.58
3073 4759 3.765257 ATGCCCTCCTCTCTCCCCG 62.765 68.421 0.00 0.00 0.00 5.73
3084 4770 4.475444 CTCCCCGCCCCCTCACTA 62.475 72.222 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.860898 GGTATTAATCTGAGCAGAAAAACATTT 57.139 29.630 4.06 0.00 41.36 2.32
42 43 8.184192 CGGTATTAATCTGAGCAGAAAAACATT 58.816 33.333 4.06 0.00 41.36 2.71
43 44 7.201732 CCGGTATTAATCTGAGCAGAAAAACAT 60.202 37.037 4.06 0.00 41.36 2.71
44 45 6.093495 CCGGTATTAATCTGAGCAGAAAAACA 59.907 38.462 4.06 0.00 41.36 2.83
45 46 6.315393 TCCGGTATTAATCTGAGCAGAAAAAC 59.685 38.462 0.00 0.01 41.36 2.43
46 47 6.315393 GTCCGGTATTAATCTGAGCAGAAAAA 59.685 38.462 0.00 2.76 41.36 1.94
47 48 5.815740 GTCCGGTATTAATCTGAGCAGAAAA 59.184 40.000 0.00 3.10 41.36 2.29
48 49 5.128827 AGTCCGGTATTAATCTGAGCAGAAA 59.871 40.000 0.00 0.00 41.36 2.52
49 50 4.649674 AGTCCGGTATTAATCTGAGCAGAA 59.350 41.667 0.00 0.00 41.36 3.02
50 51 4.215908 AGTCCGGTATTAATCTGAGCAGA 58.784 43.478 0.00 2.23 42.37 4.26
51 52 4.592485 AGTCCGGTATTAATCTGAGCAG 57.408 45.455 0.00 0.00 0.00 4.24
52 53 5.353394 AAAGTCCGGTATTAATCTGAGCA 57.647 39.130 0.00 0.00 0.00 4.26
53 54 6.049790 AGAAAAGTCCGGTATTAATCTGAGC 58.950 40.000 0.00 0.00 0.00 4.26
54 55 7.549488 ACAAGAAAAGTCCGGTATTAATCTGAG 59.451 37.037 0.00 5.26 0.00 3.35
55 56 7.391620 ACAAGAAAAGTCCGGTATTAATCTGA 58.608 34.615 0.00 0.00 0.00 3.27
56 57 7.611213 ACAAGAAAAGTCCGGTATTAATCTG 57.389 36.000 0.00 0.00 0.00 2.90
57 58 7.664318 ACAACAAGAAAAGTCCGGTATTAATCT 59.336 33.333 0.00 2.96 0.00 2.40
58 59 7.813645 ACAACAAGAAAAGTCCGGTATTAATC 58.186 34.615 0.00 0.68 0.00 1.75
59 60 7.446013 TGACAACAAGAAAAGTCCGGTATTAAT 59.554 33.333 0.00 0.00 0.00 1.40
60 61 6.766944 TGACAACAAGAAAAGTCCGGTATTAA 59.233 34.615 0.00 0.00 0.00 1.40
61 62 6.289834 TGACAACAAGAAAAGTCCGGTATTA 58.710 36.000 0.00 0.00 0.00 0.98
62 63 5.127491 TGACAACAAGAAAAGTCCGGTATT 58.873 37.500 0.00 0.00 0.00 1.89
63 64 4.710324 TGACAACAAGAAAAGTCCGGTAT 58.290 39.130 0.00 0.00 0.00 2.73
64 65 4.139859 TGACAACAAGAAAAGTCCGGTA 57.860 40.909 0.00 0.00 0.00 4.02
65 66 2.993937 TGACAACAAGAAAAGTCCGGT 58.006 42.857 0.00 0.00 0.00 5.28
66 67 4.568152 ATTGACAACAAGAAAAGTCCGG 57.432 40.909 0.00 0.00 39.46 5.14
67 68 6.885735 AAAATTGACAACAAGAAAAGTCCG 57.114 33.333 0.00 0.00 39.46 4.79
105 106 5.902613 TTCAGAGAAACTTGCCATATTGG 57.097 39.130 0.00 0.00 41.55 3.16
106 107 7.869429 ACTTTTTCAGAGAAACTTGCCATATTG 59.131 33.333 0.00 0.00 0.00 1.90
107 108 7.869429 CACTTTTTCAGAGAAACTTGCCATATT 59.131 33.333 0.00 0.00 0.00 1.28
108 109 7.014615 ACACTTTTTCAGAGAAACTTGCCATAT 59.985 33.333 0.00 0.00 0.00 1.78
109 110 6.321181 ACACTTTTTCAGAGAAACTTGCCATA 59.679 34.615 0.00 0.00 0.00 2.74
110 111 5.127682 ACACTTTTTCAGAGAAACTTGCCAT 59.872 36.000 0.00 0.00 0.00 4.40
111 112 4.462483 ACACTTTTTCAGAGAAACTTGCCA 59.538 37.500 0.00 0.00 0.00 4.92
112 113 4.998788 ACACTTTTTCAGAGAAACTTGCC 58.001 39.130 0.00 0.00 0.00 4.52
113 114 5.640732 TGACACTTTTTCAGAGAAACTTGC 58.359 37.500 0.00 0.00 0.00 4.01
114 115 7.076842 TCTGACACTTTTTCAGAGAAACTTG 57.923 36.000 0.00 0.00 43.69 3.16
143 144 7.856145 TTAGCAATTCAAGAAAAGCCAAAAA 57.144 28.000 6.32 0.00 0.00 1.94
144 145 9.723601 ATATTAGCAATTCAAGAAAAGCCAAAA 57.276 25.926 6.32 1.61 0.00 2.44
145 146 9.723601 AATATTAGCAATTCAAGAAAAGCCAAA 57.276 25.926 6.32 3.41 0.00 3.28
146 147 9.723601 AAATATTAGCAATTCAAGAAAAGCCAA 57.276 25.926 6.32 1.39 0.00 4.52
147 148 9.723601 AAAATATTAGCAATTCAAGAAAAGCCA 57.276 25.926 6.32 0.00 0.00 4.75
154 155 8.906867 CCAGAGGAAAATATTAGCAATTCAAGA 58.093 33.333 0.00 0.00 0.00 3.02
155 156 8.906867 TCCAGAGGAAAATATTAGCAATTCAAG 58.093 33.333 0.00 0.00 0.00 3.02
156 157 8.821686 TCCAGAGGAAAATATTAGCAATTCAA 57.178 30.769 0.00 0.00 0.00 2.69
157 158 9.425248 AATCCAGAGGAAAATATTAGCAATTCA 57.575 29.630 0.00 0.00 34.34 2.57
184 185 7.393234 CCTGGTTGTAGATGAACCTGATAAAAA 59.607 37.037 0.00 0.00 43.00 1.94
185 186 6.884295 CCTGGTTGTAGATGAACCTGATAAAA 59.116 38.462 0.00 0.00 43.00 1.52
186 187 6.012858 ACCTGGTTGTAGATGAACCTGATAAA 60.013 38.462 0.00 0.00 43.00 1.40
187 188 5.487488 ACCTGGTTGTAGATGAACCTGATAA 59.513 40.000 0.00 0.00 43.00 1.75
188 189 5.030147 ACCTGGTTGTAGATGAACCTGATA 58.970 41.667 0.00 0.00 43.00 2.15
189 190 3.846588 ACCTGGTTGTAGATGAACCTGAT 59.153 43.478 0.00 0.00 43.00 2.90
190 191 3.007940 CACCTGGTTGTAGATGAACCTGA 59.992 47.826 0.00 0.00 43.00 3.86
191 192 3.244561 ACACCTGGTTGTAGATGAACCTG 60.245 47.826 0.00 0.00 43.00 4.00
192 193 2.979678 ACACCTGGTTGTAGATGAACCT 59.020 45.455 0.00 0.00 43.00 3.50
193 194 3.418684 ACACCTGGTTGTAGATGAACC 57.581 47.619 0.00 0.00 42.90 3.62
194 195 4.251268 GGTACACCTGGTTGTAGATGAAC 58.749 47.826 0.00 0.00 32.53 3.18
195 196 3.262405 GGGTACACCTGGTTGTAGATGAA 59.738 47.826 0.00 0.00 32.53 2.57
196 197 2.835764 GGGTACACCTGGTTGTAGATGA 59.164 50.000 0.00 0.00 32.53 2.92
197 198 3.261981 GGGTACACCTGGTTGTAGATG 57.738 52.381 0.00 0.00 32.53 2.90
209 210 1.200519 TGCTCATACCAGGGTACACC 58.799 55.000 0.00 0.00 40.67 4.16
210 211 3.206150 CATTGCTCATACCAGGGTACAC 58.794 50.000 0.00 0.00 33.01 2.90
211 212 2.421388 GCATTGCTCATACCAGGGTACA 60.421 50.000 0.16 0.00 33.01 2.90
212 213 2.158755 AGCATTGCTCATACCAGGGTAC 60.159 50.000 5.03 0.00 30.62 3.34
213 214 2.126882 AGCATTGCTCATACCAGGGTA 58.873 47.619 5.03 0.00 30.62 3.69
214 215 0.921896 AGCATTGCTCATACCAGGGT 59.078 50.000 5.03 0.00 30.62 4.34
215 216 2.158769 TGTAGCATTGCTCATACCAGGG 60.159 50.000 15.81 0.00 40.44 4.45
216 217 3.136763 CTGTAGCATTGCTCATACCAGG 58.863 50.000 15.81 0.00 40.44 4.45
217 218 2.547211 GCTGTAGCATTGCTCATACCAG 59.453 50.000 15.81 14.25 40.44 4.00
218 219 2.564771 GCTGTAGCATTGCTCATACCA 58.435 47.619 15.81 4.79 40.44 3.25
231 232 2.787680 CGTAATACTCCGTTGCTGTAGC 59.212 50.000 0.00 0.00 42.50 3.58
232 233 3.369385 CCGTAATACTCCGTTGCTGTAG 58.631 50.000 0.00 0.00 0.00 2.74
233 234 2.099592 CCCGTAATACTCCGTTGCTGTA 59.900 50.000 0.00 0.00 0.00 2.74
234 235 1.134907 CCCGTAATACTCCGTTGCTGT 60.135 52.381 0.00 0.00 0.00 4.40
235 236 1.135527 TCCCGTAATACTCCGTTGCTG 59.864 52.381 0.00 0.00 0.00 4.41
236 237 1.135721 GTCCCGTAATACTCCGTTGCT 59.864 52.381 0.00 0.00 0.00 3.91
237 238 1.564207 GTCCCGTAATACTCCGTTGC 58.436 55.000 0.00 0.00 0.00 4.17
238 239 1.477700 TGGTCCCGTAATACTCCGTTG 59.522 52.381 0.00 0.00 0.00 4.10
239 240 1.851304 TGGTCCCGTAATACTCCGTT 58.149 50.000 0.00 0.00 0.00 4.44
240 241 2.077687 ATGGTCCCGTAATACTCCGT 57.922 50.000 0.00 0.00 0.00 4.69
241 242 3.610114 CGTAATGGTCCCGTAATACTCCG 60.610 52.174 0.00 0.00 0.00 4.63
242 243 3.305608 CCGTAATGGTCCCGTAATACTCC 60.306 52.174 0.00 0.00 0.00 3.85
243 244 3.305608 CCCGTAATGGTCCCGTAATACTC 60.306 52.174 0.00 0.00 35.15 2.59
244 245 2.629617 CCCGTAATGGTCCCGTAATACT 59.370 50.000 0.00 0.00 35.15 2.12
245 246 2.867647 GCCCGTAATGGTCCCGTAATAC 60.868 54.545 0.00 0.00 35.15 1.89
246 247 1.344114 GCCCGTAATGGTCCCGTAATA 59.656 52.381 0.00 0.00 35.15 0.98
247 248 0.107268 GCCCGTAATGGTCCCGTAAT 59.893 55.000 0.00 0.00 35.15 1.89
248 249 0.977108 AGCCCGTAATGGTCCCGTAA 60.977 55.000 0.00 0.00 35.15 3.18
249 250 0.106268 TAGCCCGTAATGGTCCCGTA 60.106 55.000 0.00 0.00 35.15 4.02
250 251 0.977108 TTAGCCCGTAATGGTCCCGT 60.977 55.000 0.00 0.00 35.15 5.28
251 252 0.395312 ATTAGCCCGTAATGGTCCCG 59.605 55.000 0.00 0.00 35.15 5.14
252 253 1.697982 AGATTAGCCCGTAATGGTCCC 59.302 52.381 0.00 0.00 35.15 4.46
253 254 3.139077 CAAGATTAGCCCGTAATGGTCC 58.861 50.000 0.00 0.00 35.15 4.46
254 255 3.808174 GTCAAGATTAGCCCGTAATGGTC 59.192 47.826 0.00 0.00 35.15 4.02
255 256 3.199071 TGTCAAGATTAGCCCGTAATGGT 59.801 43.478 0.00 0.00 35.15 3.55
256 257 3.804036 TGTCAAGATTAGCCCGTAATGG 58.196 45.455 0.00 0.00 30.93 3.16
257 258 4.214119 CCATGTCAAGATTAGCCCGTAATG 59.786 45.833 0.00 0.00 30.93 1.90
258 259 4.389374 CCATGTCAAGATTAGCCCGTAAT 58.611 43.478 0.00 0.00 33.71 1.89
259 260 3.804036 CCATGTCAAGATTAGCCCGTAA 58.196 45.455 0.00 0.00 0.00 3.18
260 261 2.484770 GCCATGTCAAGATTAGCCCGTA 60.485 50.000 0.00 0.00 0.00 4.02
261 262 1.747206 GCCATGTCAAGATTAGCCCGT 60.747 52.381 0.00 0.00 0.00 5.28
262 263 0.947244 GCCATGTCAAGATTAGCCCG 59.053 55.000 0.00 0.00 0.00 6.13
263 264 1.952296 CTGCCATGTCAAGATTAGCCC 59.048 52.381 0.00 0.00 0.00 5.19
264 265 2.648059 ACTGCCATGTCAAGATTAGCC 58.352 47.619 0.00 0.00 0.00 3.93
265 266 5.762218 AGATAACTGCCATGTCAAGATTAGC 59.238 40.000 0.00 0.00 0.00 3.09
266 267 9.499479 AATAGATAACTGCCATGTCAAGATTAG 57.501 33.333 0.00 0.00 0.00 1.73
267 268 9.276590 CAATAGATAACTGCCATGTCAAGATTA 57.723 33.333 0.00 0.00 0.00 1.75
268 269 7.230108 CCAATAGATAACTGCCATGTCAAGATT 59.770 37.037 0.00 0.00 0.00 2.40
269 270 6.713903 CCAATAGATAACTGCCATGTCAAGAT 59.286 38.462 0.00 0.00 0.00 2.40
270 271 6.057533 CCAATAGATAACTGCCATGTCAAGA 58.942 40.000 0.00 0.00 0.00 3.02
271 272 6.057533 TCCAATAGATAACTGCCATGTCAAG 58.942 40.000 0.00 0.00 0.00 3.02
272 273 6.000246 TCCAATAGATAACTGCCATGTCAA 58.000 37.500 0.00 0.00 0.00 3.18
273 274 5.628797 TCCAATAGATAACTGCCATGTCA 57.371 39.130 0.00 0.00 0.00 3.58
274 275 7.335422 CCTAATCCAATAGATAACTGCCATGTC 59.665 40.741 0.00 0.00 33.66 3.06
275 276 7.170965 CCTAATCCAATAGATAACTGCCATGT 58.829 38.462 0.00 0.00 33.66 3.21
276 277 6.600822 CCCTAATCCAATAGATAACTGCCATG 59.399 42.308 0.00 0.00 33.66 3.66
277 278 6.297243 CCCCTAATCCAATAGATAACTGCCAT 60.297 42.308 0.00 0.00 33.66 4.40
278 279 5.014123 CCCCTAATCCAATAGATAACTGCCA 59.986 44.000 0.00 0.00 33.66 4.92
279 280 5.501156 CCCCTAATCCAATAGATAACTGCC 58.499 45.833 0.00 0.00 33.66 4.85
280 281 5.501156 CCCCCTAATCCAATAGATAACTGC 58.499 45.833 0.00 0.00 33.66 4.40
313 314 0.965363 CCTGATTTTCACCCGGGTGG 60.965 60.000 45.13 29.79 45.43 4.61
314 315 0.965363 CCCTGATTTTCACCCGGGTG 60.965 60.000 42.62 42.62 46.64 4.61
315 316 1.382629 CCCTGATTTTCACCCGGGT 59.617 57.895 24.16 24.16 27.96 5.28
316 317 1.379843 CCCCTGATTTTCACCCGGG 60.380 63.158 22.25 22.25 31.23 5.73
317 318 1.379843 CCCCCTGATTTTCACCCGG 60.380 63.158 0.00 0.00 0.00 5.73
318 319 4.337013 CCCCCTGATTTTCACCCG 57.663 61.111 0.00 0.00 0.00 5.28
332 333 1.981495 CCATACAATCTCTCCTCCCCC 59.019 57.143 0.00 0.00 0.00 5.40
333 334 2.977808 TCCATACAATCTCTCCTCCCC 58.022 52.381 0.00 0.00 0.00 4.81
334 335 4.410555 ACTTTCCATACAATCTCTCCTCCC 59.589 45.833 0.00 0.00 0.00 4.30
335 336 5.606505 GACTTTCCATACAATCTCTCCTCC 58.393 45.833 0.00 0.00 0.00 4.30
336 337 5.285651 CGACTTTCCATACAATCTCTCCTC 58.714 45.833 0.00 0.00 0.00 3.71
337 338 4.442192 GCGACTTTCCATACAATCTCTCCT 60.442 45.833 0.00 0.00 0.00 3.69
338 339 3.804873 GCGACTTTCCATACAATCTCTCC 59.195 47.826 0.00 0.00 0.00 3.71
339 340 3.487574 CGCGACTTTCCATACAATCTCTC 59.512 47.826 0.00 0.00 0.00 3.20
340 341 3.119101 ACGCGACTTTCCATACAATCTCT 60.119 43.478 15.93 0.00 0.00 3.10
341 342 3.187700 ACGCGACTTTCCATACAATCTC 58.812 45.455 15.93 0.00 0.00 2.75
342 343 3.247006 ACGCGACTTTCCATACAATCT 57.753 42.857 15.93 0.00 0.00 2.40
343 344 5.432157 CATTACGCGACTTTCCATACAATC 58.568 41.667 15.93 0.00 0.00 2.67
344 345 4.272504 CCATTACGCGACTTTCCATACAAT 59.727 41.667 15.93 0.00 0.00 2.71
345 346 3.619483 CCATTACGCGACTTTCCATACAA 59.381 43.478 15.93 0.00 0.00 2.41
346 347 3.191669 CCATTACGCGACTTTCCATACA 58.808 45.455 15.93 0.00 0.00 2.29
347 348 3.192466 ACCATTACGCGACTTTCCATAC 58.808 45.455 15.93 0.00 0.00 2.39
348 349 3.450578 GACCATTACGCGACTTTCCATA 58.549 45.455 15.93 0.00 0.00 2.74
349 350 2.277084 GACCATTACGCGACTTTCCAT 58.723 47.619 15.93 0.00 0.00 3.41
350 351 1.673626 GGACCATTACGCGACTTTCCA 60.674 52.381 15.93 0.00 0.00 3.53
351 352 1.004595 GGACCATTACGCGACTTTCC 58.995 55.000 15.93 6.80 0.00 3.13
352 353 1.004595 GGGACCATTACGCGACTTTC 58.995 55.000 15.93 0.47 0.00 2.62
353 354 0.738412 CGGGACCATTACGCGACTTT 60.738 55.000 15.93 0.00 44.21 2.66
354 355 1.153706 CGGGACCATTACGCGACTT 60.154 57.895 15.93 0.00 44.21 3.01
355 356 2.345760 ACGGGACCATTACGCGACT 61.346 57.895 15.93 0.00 44.21 4.18
356 357 2.162754 CACGGGACCATTACGCGAC 61.163 63.158 15.93 0.00 44.21 5.19
357 358 2.182284 CACGGGACCATTACGCGA 59.818 61.111 15.93 0.00 44.21 5.87
358 359 2.125832 ACACGGGACCATTACGCG 60.126 61.111 3.53 3.53 46.19 6.01
359 360 0.952010 AACACACGGGACCATTACGC 60.952 55.000 0.00 0.00 0.00 4.42
360 361 1.515081 AAACACACGGGACCATTACG 58.485 50.000 0.00 0.00 0.00 3.18
361 362 2.417586 GCTAAACACACGGGACCATTAC 59.582 50.000 0.00 0.00 0.00 1.89
362 363 2.038689 TGCTAAACACACGGGACCATTA 59.961 45.455 0.00 0.00 0.00 1.90
363 364 1.202830 TGCTAAACACACGGGACCATT 60.203 47.619 0.00 0.00 0.00 3.16
364 365 0.398696 TGCTAAACACACGGGACCAT 59.601 50.000 0.00 0.00 0.00 3.55
365 366 0.398696 ATGCTAAACACACGGGACCA 59.601 50.000 0.00 0.00 0.00 4.02
366 367 1.530323 AATGCTAAACACACGGGACC 58.470 50.000 0.00 0.00 0.00 4.46
367 368 3.561503 GAAAATGCTAAACACACGGGAC 58.438 45.455 0.00 0.00 0.00 4.46
368 369 2.224549 CGAAAATGCTAAACACACGGGA 59.775 45.455 0.00 0.00 0.00 5.14
369 370 2.224549 TCGAAAATGCTAAACACACGGG 59.775 45.455 0.00 0.00 0.00 5.28
370 371 3.223157 GTCGAAAATGCTAAACACACGG 58.777 45.455 0.00 0.00 0.00 4.94
371 372 3.223157 GGTCGAAAATGCTAAACACACG 58.777 45.455 0.00 0.00 0.00 4.49
372 373 3.252458 AGGGTCGAAAATGCTAAACACAC 59.748 43.478 0.00 0.00 0.00 3.82
373 374 3.252215 CAGGGTCGAAAATGCTAAACACA 59.748 43.478 0.00 0.00 0.00 3.72
374 375 3.365969 CCAGGGTCGAAAATGCTAAACAC 60.366 47.826 0.00 0.00 0.00 3.32
375 376 2.817258 CCAGGGTCGAAAATGCTAAACA 59.183 45.455 0.00 0.00 0.00 2.83
376 377 2.817844 ACCAGGGTCGAAAATGCTAAAC 59.182 45.455 0.00 0.00 0.00 2.01
377 378 3.149005 ACCAGGGTCGAAAATGCTAAA 57.851 42.857 0.00 0.00 0.00 1.85
378 379 2.871096 ACCAGGGTCGAAAATGCTAA 57.129 45.000 0.00 0.00 0.00 3.09
379 380 4.497291 AATACCAGGGTCGAAAATGCTA 57.503 40.909 0.00 0.00 0.00 3.49
380 381 3.366052 AATACCAGGGTCGAAAATGCT 57.634 42.857 0.00 0.00 0.00 3.79
381 382 3.181490 GGAAATACCAGGGTCGAAAATGC 60.181 47.826 0.00 0.00 38.79 3.56
382 383 3.380320 GGGAAATACCAGGGTCGAAAATG 59.620 47.826 0.00 0.00 41.20 2.32
383 384 3.268595 AGGGAAATACCAGGGTCGAAAAT 59.731 43.478 0.00 0.00 41.20 1.82
384 385 2.645797 AGGGAAATACCAGGGTCGAAAA 59.354 45.455 0.00 0.00 41.20 2.29
385 386 2.271777 AGGGAAATACCAGGGTCGAAA 58.728 47.619 0.00 0.00 41.20 3.46
386 387 1.961133 AGGGAAATACCAGGGTCGAA 58.039 50.000 0.00 0.00 41.20 3.71
387 388 2.852714 TAGGGAAATACCAGGGTCGA 57.147 50.000 0.00 0.00 41.20 4.20
388 389 3.135895 ACAATAGGGAAATACCAGGGTCG 59.864 47.826 0.00 0.00 41.20 4.79
389 390 4.715713 GACAATAGGGAAATACCAGGGTC 58.284 47.826 0.00 0.00 41.20 4.46
390 391 3.135895 CGACAATAGGGAAATACCAGGGT 59.864 47.826 0.00 0.00 41.20 4.34
391 392 3.389983 TCGACAATAGGGAAATACCAGGG 59.610 47.826 0.00 0.00 41.20 4.45
397 398 6.934645 GGATCATTGTCGACAATAGGGAAATA 59.065 38.462 36.18 17.82 44.10 1.40
418 419 5.812642 CAGTTGACCAGTTACATGTAGGATC 59.187 44.000 14.76 9.61 0.00 3.36
419 420 5.483937 TCAGTTGACCAGTTACATGTAGGAT 59.516 40.000 14.76 0.00 0.00 3.24
444 446 6.463995 TTACTGAGTTGTTTTTGCTGGAAT 57.536 33.333 0.00 0.00 0.00 3.01
462 464 8.307483 TCTGACTTCCTATTTCTCAGTTTACTG 58.693 37.037 3.47 3.47 45.08 2.74
463 465 8.423906 TCTGACTTCCTATTTCTCAGTTTACT 57.576 34.615 0.00 0.00 31.94 2.24
464 466 7.762159 CCTCTGACTTCCTATTTCTCAGTTTAC 59.238 40.741 0.00 0.00 31.94 2.01
465 467 7.674348 TCCTCTGACTTCCTATTTCTCAGTTTA 59.326 37.037 0.00 0.00 31.94 2.01
466 468 6.498651 TCCTCTGACTTCCTATTTCTCAGTTT 59.501 38.462 0.00 0.00 31.94 2.66
478 480 1.148027 TCCACACTCCTCTGACTTCCT 59.852 52.381 0.00 0.00 0.00 3.36
480 482 3.753294 TTTCCACACTCCTCTGACTTC 57.247 47.619 0.00 0.00 0.00 3.01
483 487 5.344743 TCATATTTCCACACTCCTCTGAC 57.655 43.478 0.00 0.00 0.00 3.51
491 495 7.667219 ACAGATTTCACTTCATATTTCCACACT 59.333 33.333 0.00 0.00 0.00 3.55
511 515 8.518702 GCTCTCCTTAAGAAATGAAAACAGATT 58.481 33.333 3.36 0.00 32.23 2.40
512 516 7.887495 AGCTCTCCTTAAGAAATGAAAACAGAT 59.113 33.333 3.36 0.00 32.23 2.90
513 517 7.227156 AGCTCTCCTTAAGAAATGAAAACAGA 58.773 34.615 3.36 0.00 32.23 3.41
514 518 7.361628 GGAGCTCTCCTTAAGAAATGAAAACAG 60.362 40.741 14.64 0.00 46.16 3.16
559 563 2.437359 CAGGCTTTGAGCGAGGGG 60.437 66.667 0.00 0.00 43.62 4.79
586 590 4.966787 TGCGGTGGGCTCCAAACC 62.967 66.667 0.00 1.15 44.05 3.27
597 601 1.278637 GTCTGGAACGTTTGCGGTG 59.721 57.895 0.46 0.00 38.65 4.94
599 603 0.878523 TCTGTCTGGAACGTTTGCGG 60.879 55.000 0.46 0.00 43.45 5.69
606 2046 0.666577 GGACGGTTCTGTCTGGAACG 60.667 60.000 10.91 0.00 44.45 3.95
612 2052 1.296715 GCCATGGACGGTTCTGTCT 59.703 57.895 18.40 0.00 38.91 3.41
621 2061 0.307760 GAAAATAGCCGCCATGGACG 59.692 55.000 18.40 18.22 42.00 4.79
623 2063 1.211703 TGAGAAAATAGCCGCCATGGA 59.788 47.619 18.40 0.00 42.00 3.41
624 2064 1.679139 TGAGAAAATAGCCGCCATGG 58.321 50.000 7.63 7.63 42.50 3.66
625 2065 3.781079 TTTGAGAAAATAGCCGCCATG 57.219 42.857 0.00 0.00 0.00 3.66
626 2066 4.799564 TTTTTGAGAAAATAGCCGCCAT 57.200 36.364 0.00 0.00 30.07 4.40
648 2088 1.099689 CCGCCATGGACGGTATTTTT 58.900 50.000 28.77 0.00 45.70 1.94
650 2090 4.551729 CCGCCATGGACGGTATTT 57.448 55.556 28.77 0.00 45.70 1.40
675 2166 5.648092 CCTTTTGACCGTCCTAATCAATTCT 59.352 40.000 0.00 0.00 32.61 2.40
677 2168 4.705023 CCCTTTTGACCGTCCTAATCAATT 59.295 41.667 0.00 0.00 32.61 2.32
691 2182 1.068588 GTGCCCAAAGTCCCTTTTGAC 59.931 52.381 0.37 0.00 39.79 3.18
701 2192 1.164041 GCTACGTGTGTGCCCAAAGT 61.164 55.000 0.00 0.00 0.00 2.66
707 2198 1.446272 GAGGAGCTACGTGTGTGCC 60.446 63.158 0.00 0.00 0.00 5.01
728 2224 3.901844 ACTTGGAGTAGCTGGTTGACTTA 59.098 43.478 0.00 0.00 0.00 2.24
736 2232 1.448540 CCGCACTTGGAGTAGCTGG 60.449 63.158 0.00 0.00 0.00 4.85
737 2233 0.737715 GACCGCACTTGGAGTAGCTG 60.738 60.000 0.00 0.00 0.00 4.24
762 2258 3.482783 GACTGTCTTCGCCAGCGC 61.483 66.667 7.27 0.00 39.59 5.92
763 2259 2.049156 TGACTGTCTTCGCCAGCG 60.049 61.111 5.50 5.50 41.35 5.18
764 2260 1.739562 CCTGACTGTCTTCGCCAGC 60.740 63.158 9.51 0.00 33.09 4.85
765 2261 0.534412 ATCCTGACTGTCTTCGCCAG 59.466 55.000 9.51 0.00 36.01 4.85
779 2276 1.371022 CGTCCTCGATCGCATCCTG 60.371 63.158 11.09 0.00 39.71 3.86
900 2399 2.669434 TGGCGTTTTATAGCAGACGTTC 59.331 45.455 0.00 0.00 37.78 3.95
904 2403 1.997606 ACGTGGCGTTTTATAGCAGAC 59.002 47.619 0.00 0.00 36.35 3.51
916 2415 3.711842 CGCATGTGAACGTGGCGT 61.712 61.111 0.00 0.00 43.97 5.68
956 2455 1.001120 TCAGATGGGCCGTCCTGTA 59.999 57.895 22.06 2.58 36.20 2.74
976 2475 2.882137 GTCTTCCTCCTCGGTAGATCTG 59.118 54.545 5.18 0.00 40.72 2.90
986 2493 1.443828 GCCATCGGTCTTCCTCCTC 59.556 63.158 0.00 0.00 0.00 3.71
989 2496 2.586357 GCGCCATCGGTCTTCCTC 60.586 66.667 0.00 0.00 35.95 3.71
1286 2796 6.954487 AGAGAAAAGATATCATGCATTGCA 57.046 33.333 14.72 14.72 44.86 4.08
1287 2797 7.705325 ACAAAGAGAAAAGATATCATGCATTGC 59.295 33.333 5.32 0.46 0.00 3.56
1308 2818 5.008514 TCAATGACACCACATACACACAAAG 59.991 40.000 0.00 0.00 0.00 2.77
1338 2987 2.051345 CCACAGACGCGGCAAAAC 60.051 61.111 17.71 0.00 0.00 2.43
1341 2990 4.555709 AACCCACAGACGCGGCAA 62.556 61.111 17.71 0.00 0.00 4.52
1342 2991 4.980805 GAACCCACAGACGCGGCA 62.981 66.667 17.71 0.00 0.00 5.69
1344 2993 4.308458 TGGAACCCACAGACGCGG 62.308 66.667 12.47 0.00 0.00 6.46
1345 2994 2.738521 CTGGAACCCACAGACGCG 60.739 66.667 3.53 3.53 38.20 6.01
1346 2995 1.961277 CACTGGAACCCACAGACGC 60.961 63.158 0.00 0.00 39.24 5.19
1347 2996 0.880278 CACACTGGAACCCACAGACG 60.880 60.000 0.00 0.00 39.24 4.18
1348 2997 1.166531 GCACACTGGAACCCACAGAC 61.167 60.000 0.00 0.00 39.24 3.51
1349 2998 1.148273 GCACACTGGAACCCACAGA 59.852 57.895 0.00 0.00 39.24 3.41
1350 2999 2.253758 CGCACACTGGAACCCACAG 61.254 63.158 0.00 0.00 41.64 3.66
1351 3000 2.203139 CGCACACTGGAACCCACA 60.203 61.111 0.00 0.00 0.00 4.17
1352 3001 2.110213 TCGCACACTGGAACCCAC 59.890 61.111 0.00 0.00 0.00 4.61
1719 3380 4.803426 GGCCGCAGTCCTCGTGAG 62.803 72.222 0.00 0.00 0.00 3.51
1865 3526 1.418264 TGGAACTTGAACCCGATGTCA 59.582 47.619 0.00 0.00 0.00 3.58
1886 3547 2.592574 ACGTCGTCGGTGAGGTCA 60.593 61.111 7.05 0.00 41.85 4.02
2076 3746 5.339008 ACTTATTGCATAGTTCAGTCGGA 57.661 39.130 0.00 0.00 0.00 4.55
2096 3767 0.940126 CAAAGCTCACGTCTGCAACT 59.060 50.000 11.22 0.00 0.00 3.16
2097 3768 0.658536 GCAAAGCTCACGTCTGCAAC 60.659 55.000 11.22 0.00 33.19 4.17
2119 3790 0.038599 TAGTAGTGCGGTGGAGGTGA 59.961 55.000 0.00 0.00 0.00 4.02
2129 3800 1.067212 GATCAGGGGTGTAGTAGTGCG 59.933 57.143 0.00 0.00 0.00 5.34
2148 3819 5.220815 GCAGAAATTTGTTGCCATTTTGTGA 60.221 36.000 11.43 0.00 31.79 3.58
2153 3824 4.211794 CGAAGCAGAAATTTGTTGCCATTT 59.788 37.500 16.57 8.14 38.58 2.32
2209 3880 9.137459 TGACCTTCAGTTACATTTTTATTTCCA 57.863 29.630 0.00 0.00 0.00 3.53
2227 3898 4.405358 AGCAGAAATTTTGGTTGACCTTCA 59.595 37.500 1.34 0.00 36.82 3.02
2228 3899 4.948847 AGCAGAAATTTTGGTTGACCTTC 58.051 39.130 1.34 0.00 36.82 3.46
2232 3903 4.359706 ACGAAGCAGAAATTTTGGTTGAC 58.640 39.130 16.85 7.60 36.49 3.18
2265 3943 8.239478 ACCTGACCAGAGGGAGTAATAATATTA 58.761 37.037 0.00 0.00 37.45 0.98
2271 3949 4.348020 AACCTGACCAGAGGGAGTAATA 57.652 45.455 0.00 0.00 37.45 0.98
2272 3950 2.950990 ACCTGACCAGAGGGAGTAAT 57.049 50.000 0.00 0.00 37.45 1.89
2273 3951 2.715763 AACCTGACCAGAGGGAGTAA 57.284 50.000 0.00 0.00 37.45 2.24
2283 3961 5.338871 GGTTGACATCCTATAAACCTGACCA 60.339 44.000 0.00 0.00 37.81 4.02
2284 3962 5.123936 GGTTGACATCCTATAAACCTGACC 58.876 45.833 0.00 0.00 37.81 4.02
2286 3964 6.356556 CATGGTTGACATCCTATAAACCTGA 58.643 40.000 4.22 0.00 40.76 3.86
2310 3988 8.584384 ATATATGTCATATACCAGCAAGCGTGC 61.584 40.741 17.43 17.43 39.49 5.34
2311 3989 2.549926 TGTCATATACCAGCAAGCGTG 58.450 47.619 0.00 0.00 0.00 5.34
2312 3990 2.979814 TGTCATATACCAGCAAGCGT 57.020 45.000 0.00 0.00 0.00 5.07
2313 3991 7.492344 TCAATATATGTCATATACCAGCAAGCG 59.508 37.037 13.63 0.00 31.02 4.68
2314 3992 8.722480 TCAATATATGTCATATACCAGCAAGC 57.278 34.615 13.63 0.00 31.02 4.01
2337 4015 9.307121 TGTCTTTTCGCAAAAATAAAAGAATCA 57.693 25.926 10.16 4.31 45.66 2.57
2347 4025 8.730680 ACTCAGTATATGTCTTTTCGCAAAAAT 58.269 29.630 0.00 0.00 34.00 1.82
2348 4026 8.094798 ACTCAGTATATGTCTTTTCGCAAAAA 57.905 30.769 0.00 0.00 33.42 1.94
2349 4027 7.667043 ACTCAGTATATGTCTTTTCGCAAAA 57.333 32.000 0.00 0.00 0.00 2.44
2350 4028 7.667043 AACTCAGTATATGTCTTTTCGCAAA 57.333 32.000 0.00 0.00 0.00 3.68
2351 4029 8.766000 TTAACTCAGTATATGTCTTTTCGCAA 57.234 30.769 0.00 0.00 0.00 4.85
2352 4030 8.942338 ATTAACTCAGTATATGTCTTTTCGCA 57.058 30.769 0.00 0.00 0.00 5.10
2385 4063 9.796120 ACATGTTTCGAAACTTTATTTGAAAGA 57.204 25.926 33.94 15.00 41.20 2.52
2446 4124 7.596248 GCACATGTTTGAATTTCTAGATTGTGT 59.404 33.333 0.00 5.24 0.00 3.72
2447 4125 7.062605 GGCACATGTTTGAATTTCTAGATTGTG 59.937 37.037 0.00 13.28 0.00 3.33
2448 4126 7.092716 GGCACATGTTTGAATTTCTAGATTGT 58.907 34.615 0.00 0.00 0.00 2.71
2449 4127 6.532657 GGGCACATGTTTGAATTTCTAGATTG 59.467 38.462 0.00 0.00 0.00 2.67
2450 4128 6.625740 CGGGCACATGTTTGAATTTCTAGATT 60.626 38.462 0.00 0.00 0.00 2.40
2451 4129 5.163622 CGGGCACATGTTTGAATTTCTAGAT 60.164 40.000 0.00 0.00 0.00 1.98
2452 4130 4.155826 CGGGCACATGTTTGAATTTCTAGA 59.844 41.667 0.00 0.00 0.00 2.43
2453 4131 4.414852 CGGGCACATGTTTGAATTTCTAG 58.585 43.478 0.00 0.00 0.00 2.43
2454 4132 3.366883 GCGGGCACATGTTTGAATTTCTA 60.367 43.478 0.00 0.00 0.00 2.10
2455 4133 2.610232 GCGGGCACATGTTTGAATTTCT 60.610 45.455 0.00 0.00 0.00 2.52
2456 4134 1.726248 GCGGGCACATGTTTGAATTTC 59.274 47.619 0.00 0.00 0.00 2.17
2457 4135 1.607767 GGCGGGCACATGTTTGAATTT 60.608 47.619 0.00 0.00 0.00 1.82
2458 4136 0.037419 GGCGGGCACATGTTTGAATT 60.037 50.000 0.00 0.00 0.00 2.17
2459 4137 1.591183 GGCGGGCACATGTTTGAAT 59.409 52.632 0.00 0.00 0.00 2.57
2460 4138 2.913765 CGGCGGGCACATGTTTGAA 61.914 57.895 0.00 0.00 0.00 2.69
2461 4139 3.361158 CGGCGGGCACATGTTTGA 61.361 61.111 0.00 0.00 0.00 2.69
2476 4154 3.186047 GACATGGGAACGACGCGG 61.186 66.667 12.47 0.00 0.00 6.46
2477 4155 2.431771 TGACATGGGAACGACGCG 60.432 61.111 3.53 3.53 0.00 6.01
2478 4156 0.108992 TAGTGACATGGGAACGACGC 60.109 55.000 0.00 0.00 0.00 5.19
2479 4157 1.201647 AGTAGTGACATGGGAACGACG 59.798 52.381 0.00 0.00 0.00 5.12
2480 4158 3.693085 TCTAGTAGTGACATGGGAACGAC 59.307 47.826 0.00 0.00 0.00 4.34
2481 4159 3.959293 TCTAGTAGTGACATGGGAACGA 58.041 45.455 0.00 0.00 0.00 3.85
2482 4160 4.713824 TTCTAGTAGTGACATGGGAACG 57.286 45.455 0.00 0.00 0.00 3.95
2483 4161 7.626452 GCATTTTTCTAGTAGTGACATGGGAAC 60.626 40.741 0.00 0.00 0.00 3.62
2484 4162 6.374333 GCATTTTTCTAGTAGTGACATGGGAA 59.626 38.462 0.00 0.00 0.00 3.97
2485 4163 5.880332 GCATTTTTCTAGTAGTGACATGGGA 59.120 40.000 0.00 0.00 0.00 4.37
2486 4164 5.882557 AGCATTTTTCTAGTAGTGACATGGG 59.117 40.000 0.00 0.00 0.00 4.00
2487 4165 6.992063 AGCATTTTTCTAGTAGTGACATGG 57.008 37.500 0.00 0.00 0.00 3.66
2530 4208 0.601057 GGGGCACAAACAAACGCTAT 59.399 50.000 0.00 0.00 0.00 2.97
2574 4252 1.034838 AACGTTCTTTGTGCCCAGCA 61.035 50.000 0.00 0.00 35.60 4.41
2592 4270 6.535150 GCGATGCTGCTAATCTATACCAATAA 59.465 38.462 0.00 0.00 0.00 1.40
2614 4292 1.107114 TGCCCAAAGAAAACAAGCGA 58.893 45.000 0.00 0.00 0.00 4.93
2642 4320 0.531200 GGGTCAACTGACGGAGGTAG 59.469 60.000 3.85 0.00 45.65 3.18
2645 4323 2.261671 CGGGTCAACTGACGGAGG 59.738 66.667 3.85 0.00 45.65 4.30
2651 4333 3.220999 CTGTCCGCGGGTCAACTGA 62.221 63.158 27.83 0.00 0.00 3.41
2653 4335 4.003788 CCTGTCCGCGGGTCAACT 62.004 66.667 27.83 0.00 36.39 3.16
2701 4383 4.398358 ACGACTATGTTTCTAGTGCTAGCA 59.602 41.667 14.93 14.93 32.11 3.49
2770 4456 3.376918 GCTGGGCTGGGTTGCTTC 61.377 66.667 0.00 0.00 0.00 3.86
2852 4538 2.433664 GGATTCGCCCGTCGTTGT 60.434 61.111 0.00 0.00 39.67 3.32
2897 4583 2.866762 GAGAACTCGTGAGTGTGCTTTT 59.133 45.455 2.78 0.00 43.22 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.