Multiple sequence alignment - TraesCS3A01G467700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G467700 | chr3A | 100.000 | 4836 | 0 | 0 | 1 | 4836 | 700890251 | 700895086 | 0.000000e+00 | 8931.0 |
1 | TraesCS3A01G467700 | chr3A | 83.987 | 1249 | 101 | 38 | 2835 | 4063 | 700953341 | 700954510 | 0.000000e+00 | 1107.0 |
2 | TraesCS3A01G467700 | chr3A | 81.634 | 1187 | 120 | 33 | 3587 | 4713 | 700911358 | 700912506 | 0.000000e+00 | 894.0 |
3 | TraesCS3A01G467700 | chr3A | 87.134 | 785 | 67 | 21 | 3362 | 4138 | 701123797 | 701124555 | 0.000000e+00 | 859.0 |
4 | TraesCS3A01G467700 | chr3A | 81.905 | 945 | 125 | 22 | 3227 | 4168 | 700945397 | 700946298 | 0.000000e+00 | 756.0 |
5 | TraesCS3A01G467700 | chr3A | 86.880 | 686 | 52 | 18 | 2917 | 3598 | 700908741 | 700909392 | 0.000000e+00 | 734.0 |
6 | TraesCS3A01G467700 | chr3A | 87.692 | 390 | 16 | 16 | 848 | 1213 | 700952155 | 700952536 | 4.470000e-115 | 425.0 |
7 | TraesCS3A01G467700 | chr3A | 84.855 | 449 | 18 | 13 | 797 | 1215 | 701122091 | 701122519 | 1.620000e-109 | 407.0 |
8 | TraesCS3A01G467700 | chr3A | 88.438 | 320 | 27 | 5 | 2835 | 3148 | 701123458 | 701123773 | 1.270000e-100 | 377.0 |
9 | TraesCS3A01G467700 | chr3A | 78.450 | 645 | 80 | 29 | 2835 | 3471 | 701139884 | 701140477 | 2.750000e-97 | 366.0 |
10 | TraesCS3A01G467700 | chr3A | 90.526 | 285 | 9 | 6 | 855 | 1136 | 700959240 | 700959509 | 1.280000e-95 | 361.0 |
11 | TraesCS3A01G467700 | chr3A | 87.755 | 294 | 16 | 10 | 857 | 1136 | 700907642 | 700907929 | 4.670000e-85 | 326.0 |
12 | TraesCS3A01G467700 | chr3A | 80.000 | 415 | 45 | 23 | 2835 | 3242 | 700944925 | 700945308 | 6.170000e-69 | 272.0 |
13 | TraesCS3A01G467700 | chr3A | 82.313 | 294 | 35 | 5 | 4279 | 4566 | 701142010 | 701142292 | 6.260000e-59 | 239.0 |
14 | TraesCS3A01G467700 | chr3A | 80.317 | 315 | 51 | 4 | 2835 | 3143 | 697520982 | 697521291 | 1.350000e-55 | 228.0 |
15 | TraesCS3A01G467700 | chr3A | 88.199 | 161 | 19 | 0 | 1313 | 1473 | 700952653 | 700952813 | 4.940000e-45 | 193.0 |
16 | TraesCS3A01G467700 | chr3A | 90.370 | 135 | 8 | 5 | 791 | 920 | 700943325 | 700943459 | 6.430000e-39 | 172.0 |
17 | TraesCS3A01G467700 | chr3A | 81.768 | 181 | 22 | 1 | 4522 | 4691 | 701142305 | 701142485 | 1.810000e-29 | 141.0 |
18 | TraesCS3A01G467700 | chr3A | 97.872 | 47 | 1 | 0 | 797 | 843 | 700891000 | 700891046 | 1.120000e-11 | 82.4 |
19 | TraesCS3A01G467700 | chr3A | 97.872 | 47 | 1 | 0 | 750 | 796 | 700891047 | 700891093 | 1.120000e-11 | 82.4 |
20 | TraesCS3A01G467700 | chr3A | 91.379 | 58 | 3 | 2 | 740 | 797 | 700943324 | 700943379 | 1.440000e-10 | 78.7 |
21 | TraesCS3A01G467700 | chr3A | 84.848 | 66 | 3 | 2 | 739 | 797 | 701122080 | 701122145 | 5.230000e-05 | 60.2 |
22 | TraesCS3A01G467700 | chr3B | 95.140 | 1461 | 51 | 10 | 3392 | 4836 | 755575764 | 755577220 | 0.000000e+00 | 2287.0 |
23 | TraesCS3A01G467700 | chr3B | 91.377 | 893 | 43 | 14 | 620 | 1488 | 755573397 | 755574279 | 0.000000e+00 | 1192.0 |
24 | TraesCS3A01G467700 | chr3B | 92.561 | 578 | 32 | 4 | 3362 | 3929 | 755771282 | 755771858 | 0.000000e+00 | 819.0 |
25 | TraesCS3A01G467700 | chr3B | 80.829 | 1085 | 141 | 35 | 3527 | 4566 | 756082110 | 756081048 | 0.000000e+00 | 789.0 |
26 | TraesCS3A01G467700 | chr3B | 91.132 | 530 | 20 | 12 | 2836 | 3364 | 755575266 | 755575769 | 0.000000e+00 | 693.0 |
27 | TraesCS3A01G467700 | chr3B | 87.440 | 621 | 53 | 7 | 1 | 621 | 755563891 | 755564486 | 0.000000e+00 | 691.0 |
28 | TraesCS3A01G467700 | chr3B | 82.895 | 760 | 70 | 23 | 3386 | 4122 | 754722096 | 754722818 | 3.180000e-176 | 628.0 |
29 | TraesCS3A01G467700 | chr3B | 93.496 | 369 | 19 | 3 | 1671 | 2038 | 755574785 | 755575149 | 1.180000e-150 | 544.0 |
30 | TraesCS3A01G467700 | chr3B | 82.131 | 582 | 69 | 16 | 3230 | 3805 | 755710576 | 755711128 | 2.640000e-127 | 466.0 |
31 | TraesCS3A01G467700 | chr3B | 81.661 | 578 | 51 | 20 | 2835 | 3398 | 755605278 | 755605814 | 3.460000e-116 | 429.0 |
32 | TraesCS3A01G467700 | chr3B | 80.798 | 526 | 57 | 23 | 1549 | 2038 | 754719053 | 754719570 | 5.910000e-99 | 372.0 |
33 | TraesCS3A01G467700 | chr3B | 89.474 | 285 | 23 | 5 | 2870 | 3148 | 755770975 | 755771258 | 2.140000e-93 | 353.0 |
34 | TraesCS3A01G467700 | chr3B | 89.547 | 287 | 16 | 8 | 857 | 1136 | 754718150 | 754718429 | 7.700000e-93 | 351.0 |
35 | TraesCS3A01G467700 | chr3B | 89.510 | 286 | 18 | 5 | 857 | 1136 | 755604076 | 755604355 | 7.700000e-93 | 351.0 |
36 | TraesCS3A01G467700 | chr3B | 82.134 | 403 | 30 | 15 | 2835 | 3226 | 754771074 | 754771445 | 1.690000e-79 | 307.0 |
37 | TraesCS3A01G467700 | chr3B | 83.562 | 365 | 21 | 20 | 791 | 1137 | 755707927 | 755708270 | 6.080000e-79 | 305.0 |
38 | TraesCS3A01G467700 | chr3B | 94.330 | 194 | 7 | 1 | 1485 | 1678 | 755574518 | 755574707 | 1.320000e-75 | 294.0 |
39 | TraesCS3A01G467700 | chr3B | 78.606 | 416 | 40 | 16 | 2835 | 3242 | 755710110 | 755710484 | 3.760000e-56 | 230.0 |
40 | TraesCS3A01G467700 | chr3B | 83.613 | 238 | 25 | 9 | 3943 | 4174 | 755722132 | 755722361 | 1.360000e-50 | 211.0 |
41 | TraesCS3A01G467700 | chr3B | 87.861 | 173 | 18 | 2 | 1313 | 1482 | 755770278 | 755770450 | 2.950000e-47 | 200.0 |
42 | TraesCS3A01G467700 | chr3B | 86.932 | 176 | 23 | 0 | 1313 | 1488 | 755604592 | 755604767 | 1.060000e-46 | 198.0 |
43 | TraesCS3A01G467700 | chr3B | 84.722 | 144 | 11 | 6 | 857 | 995 | 754767495 | 754767632 | 3.040000e-27 | 134.0 |
44 | TraesCS3A01G467700 | chr3B | 94.203 | 69 | 4 | 0 | 2016 | 2084 | 755575151 | 755575219 | 6.620000e-19 | 106.0 |
45 | TraesCS3A01G467700 | chr3B | 96.970 | 33 | 1 | 0 | 1182 | 1214 | 761167045 | 761167077 | 6.760000e-04 | 56.5 |
46 | TraesCS3A01G467700 | chr3D | 91.371 | 1240 | 50 | 24 | 2835 | 4063 | 566423106 | 566421913 | 0.000000e+00 | 1644.0 |
47 | TraesCS3A01G467700 | chr3D | 93.137 | 918 | 32 | 10 | 636 | 1544 | 566424051 | 566423156 | 0.000000e+00 | 1317.0 |
48 | TraesCS3A01G467700 | chr3D | 84.852 | 845 | 67 | 20 | 3207 | 4032 | 566300265 | 566299463 | 0.000000e+00 | 795.0 |
49 | TraesCS3A01G467700 | chr3D | 83.160 | 576 | 42 | 22 | 2835 | 3398 | 566131810 | 566131278 | 4.380000e-130 | 475.0 |
50 | TraesCS3A01G467700 | chr3D | 88.924 | 316 | 24 | 5 | 2835 | 3143 | 566300592 | 566300281 | 3.530000e-101 | 379.0 |
51 | TraesCS3A01G467700 | chr3D | 88.889 | 288 | 16 | 10 | 857 | 1136 | 566138676 | 566138397 | 1.670000e-89 | 340.0 |
52 | TraesCS3A01G467700 | chr3D | 84.483 | 290 | 19 | 7 | 2937 | 3226 | 566393016 | 566392753 | 3.710000e-66 | 263.0 |
53 | TraesCS3A01G467700 | chr3D | 85.328 | 259 | 29 | 7 | 1783 | 2038 | 566132689 | 566132437 | 4.800000e-65 | 259.0 |
54 | TraesCS3A01G467700 | chr3D | 93.571 | 140 | 8 | 1 | 444 | 582 | 566424197 | 566424058 | 1.760000e-49 | 207.0 |
55 | TraesCS3A01G467700 | chr3D | 82.381 | 210 | 21 | 7 | 1549 | 1743 | 566137777 | 566137569 | 8.320000e-38 | 169.0 |
56 | TraesCS3A01G467700 | chr3D | 86.000 | 150 | 13 | 5 | 3910 | 4054 | 566129192 | 566129046 | 2.330000e-33 | 154.0 |
57 | TraesCS3A01G467700 | chr3D | 95.745 | 47 | 2 | 0 | 797 | 843 | 566423930 | 566423884 | 5.190000e-10 | 76.8 |
58 | TraesCS3A01G467700 | chr3D | 96.970 | 33 | 1 | 0 | 2096 | 2128 | 566423160 | 566423128 | 6.760000e-04 | 56.5 |
59 | TraesCS3A01G467700 | chr5A | 98.042 | 715 | 14 | 0 | 2128 | 2842 | 115617924 | 115617210 | 0.000000e+00 | 1243.0 |
60 | TraesCS3A01G467700 | chr5A | 80.449 | 312 | 50 | 4 | 2838 | 3143 | 609822985 | 609822679 | 1.350000e-55 | 228.0 |
61 | TraesCS3A01G467700 | chr5A | 100.000 | 30 | 0 | 0 | 313 | 342 | 457422690 | 457422719 | 6.760000e-04 | 56.5 |
62 | TraesCS3A01G467700 | chr4A | 98.034 | 712 | 14 | 0 | 2128 | 2839 | 600979463 | 600980174 | 0.000000e+00 | 1238.0 |
63 | TraesCS3A01G467700 | chr4A | 100.000 | 29 | 0 | 0 | 4384 | 4412 | 469109399 | 469109427 | 2.000000e-03 | 54.7 |
64 | TraesCS3A01G467700 | chr2A | 97.609 | 711 | 16 | 1 | 2129 | 2839 | 8565464 | 8566173 | 0.000000e+00 | 1218.0 |
65 | TraesCS3A01G467700 | chr2A | 97.465 | 710 | 18 | 0 | 2130 | 2839 | 445031990 | 445032699 | 0.000000e+00 | 1212.0 |
66 | TraesCS3A01G467700 | chr6A | 97.606 | 710 | 15 | 2 | 2131 | 2839 | 520808980 | 520809688 | 0.000000e+00 | 1216.0 |
67 | TraesCS3A01G467700 | chr6A | 97.320 | 709 | 17 | 2 | 2132 | 2839 | 520821546 | 520822253 | 0.000000e+00 | 1203.0 |
68 | TraesCS3A01G467700 | chr6A | 97.187 | 711 | 18 | 2 | 2130 | 2839 | 520775340 | 520776049 | 0.000000e+00 | 1201.0 |
69 | TraesCS3A01G467700 | chr6A | 96.906 | 711 | 20 | 2 | 2130 | 2839 | 520796410 | 520797119 | 0.000000e+00 | 1190.0 |
70 | TraesCS3A01G467700 | chr7A | 97.468 | 711 | 18 | 0 | 2129 | 2839 | 649096116 | 649096826 | 0.000000e+00 | 1214.0 |
71 | TraesCS3A01G467700 | chr7A | 80.573 | 314 | 51 | 5 | 2835 | 3143 | 113795802 | 113796110 | 2.910000e-57 | 233.0 |
72 | TraesCS3A01G467700 | chr7A | 80.769 | 312 | 49 | 4 | 2838 | 3143 | 674115758 | 674115452 | 2.910000e-57 | 233.0 |
73 | TraesCS3A01G467700 | chr7A | 80.449 | 312 | 50 | 4 | 2838 | 3143 | 672598597 | 672598291 | 1.350000e-55 | 228.0 |
74 | TraesCS3A01G467700 | chrUn | 80.829 | 1085 | 141 | 35 | 3527 | 4566 | 408040744 | 408041806 | 0.000000e+00 | 789.0 |
75 | TraesCS3A01G467700 | chrUn | 79.348 | 276 | 31 | 14 | 3198 | 3471 | 40792162 | 40792413 | 2.310000e-38 | 171.0 |
76 | TraesCS3A01G467700 | chrUn | 79.348 | 276 | 31 | 14 | 3198 | 3471 | 310420579 | 310420328 | 2.310000e-38 | 171.0 |
77 | TraesCS3A01G467700 | chr4D | 84.862 | 218 | 24 | 5 | 1004 | 1215 | 503639118 | 503639332 | 1.360000e-50 | 211.0 |
78 | TraesCS3A01G467700 | chr4D | 78.758 | 306 | 51 | 6 | 2844 | 3143 | 503639780 | 503640077 | 4.940000e-45 | 193.0 |
79 | TraesCS3A01G467700 | chr7B | 88.816 | 152 | 15 | 2 | 985 | 1136 | 435792319 | 435792170 | 8.270000e-43 | 185.0 |
80 | TraesCS3A01G467700 | chr7B | 84.615 | 104 | 15 | 1 | 274 | 376 | 62762891 | 62762994 | 8.560000e-18 | 102.0 |
81 | TraesCS3A01G467700 | chr6B | 75.684 | 329 | 68 | 7 | 281 | 605 | 560187400 | 560187720 | 2.330000e-33 | 154.0 |
82 | TraesCS3A01G467700 | chr1B | 79.739 | 153 | 20 | 4 | 2838 | 2984 | 117289799 | 117289652 | 3.080000e-17 | 100.0 |
83 | TraesCS3A01G467700 | chr2B | 95.745 | 47 | 1 | 1 | 1170 | 1215 | 704575390 | 704575436 | 1.870000e-09 | 75.0 |
84 | TraesCS3A01G467700 | chr2B | 100.000 | 29 | 0 | 0 | 1187 | 1215 | 754437392 | 754437364 | 2.000000e-03 | 54.7 |
85 | TraesCS3A01G467700 | chr2D | 92.857 | 42 | 3 | 0 | 1174 | 1215 | 584625018 | 584625059 | 1.450000e-05 | 62.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G467700 | chr3A | 700890251 | 700895086 | 4835 | False | 8931.000000 | 8931 | 100.000000 | 1 | 4836 | 1 | chr3A.!!$F2 | 4835 |
1 | TraesCS3A01G467700 | chr3A | 700907642 | 700912506 | 4864 | False | 651.333333 | 894 | 85.423000 | 857 | 4713 | 3 | chr3A.!!$F5 | 3856 |
2 | TraesCS3A01G467700 | chr3A | 700952155 | 700954510 | 2355 | False | 575.000000 | 1107 | 86.626000 | 848 | 4063 | 3 | chr3A.!!$F7 | 3215 |
3 | TraesCS3A01G467700 | chr3A | 701122080 | 701124555 | 2475 | False | 425.800000 | 859 | 86.318750 | 739 | 4138 | 4 | chr3A.!!$F8 | 3399 |
4 | TraesCS3A01G467700 | chr3A | 700943324 | 700946298 | 2974 | False | 319.675000 | 756 | 85.913500 | 740 | 4168 | 4 | chr3A.!!$F6 | 3428 |
5 | TraesCS3A01G467700 | chr3A | 701139884 | 701142485 | 2601 | False | 248.666667 | 366 | 80.843667 | 2835 | 4691 | 3 | chr3A.!!$F9 | 1856 |
6 | TraesCS3A01G467700 | chr3B | 755573397 | 755577220 | 3823 | False | 852.666667 | 2287 | 93.279667 | 620 | 4836 | 6 | chr3B.!!$F6 | 4216 |
7 | TraesCS3A01G467700 | chr3B | 756081048 | 756082110 | 1062 | True | 789.000000 | 789 | 80.829000 | 3527 | 4566 | 1 | chr3B.!!$R1 | 1039 |
8 | TraesCS3A01G467700 | chr3B | 755563891 | 755564486 | 595 | False | 691.000000 | 691 | 87.440000 | 1 | 621 | 1 | chr3B.!!$F1 | 620 |
9 | TraesCS3A01G467700 | chr3B | 755770278 | 755771858 | 1580 | False | 457.333333 | 819 | 89.965333 | 1313 | 3929 | 3 | chr3B.!!$F9 | 2616 |
10 | TraesCS3A01G467700 | chr3B | 754718150 | 754722818 | 4668 | False | 450.333333 | 628 | 84.413333 | 857 | 4122 | 3 | chr3B.!!$F4 | 3265 |
11 | TraesCS3A01G467700 | chr3B | 755707927 | 755711128 | 3201 | False | 333.666667 | 466 | 81.433000 | 791 | 3805 | 3 | chr3B.!!$F8 | 3014 |
12 | TraesCS3A01G467700 | chr3B | 755604076 | 755605814 | 1738 | False | 326.000000 | 429 | 86.034333 | 857 | 3398 | 3 | chr3B.!!$F7 | 2541 |
13 | TraesCS3A01G467700 | chr3B | 754767495 | 754771445 | 3950 | False | 220.500000 | 307 | 83.428000 | 857 | 3226 | 2 | chr3B.!!$F5 | 2369 |
14 | TraesCS3A01G467700 | chr3D | 566421913 | 566424197 | 2284 | True | 660.260000 | 1644 | 94.158800 | 444 | 4063 | 5 | chr3D.!!$R5 | 3619 |
15 | TraesCS3A01G467700 | chr3D | 566299463 | 566300592 | 1129 | True | 587.000000 | 795 | 86.888000 | 2835 | 4032 | 2 | chr3D.!!$R4 | 1197 |
16 | TraesCS3A01G467700 | chr3D | 566129046 | 566132689 | 3643 | True | 296.000000 | 475 | 84.829333 | 1783 | 4054 | 3 | chr3D.!!$R2 | 2271 |
17 | TraesCS3A01G467700 | chr3D | 566137569 | 566138676 | 1107 | True | 254.500000 | 340 | 85.635000 | 857 | 1743 | 2 | chr3D.!!$R3 | 886 |
18 | TraesCS3A01G467700 | chr5A | 115617210 | 115617924 | 714 | True | 1243.000000 | 1243 | 98.042000 | 2128 | 2842 | 1 | chr5A.!!$R1 | 714 |
19 | TraesCS3A01G467700 | chr4A | 600979463 | 600980174 | 711 | False | 1238.000000 | 1238 | 98.034000 | 2128 | 2839 | 1 | chr4A.!!$F2 | 711 |
20 | TraesCS3A01G467700 | chr2A | 8565464 | 8566173 | 709 | False | 1218.000000 | 1218 | 97.609000 | 2129 | 2839 | 1 | chr2A.!!$F1 | 710 |
21 | TraesCS3A01G467700 | chr2A | 445031990 | 445032699 | 709 | False | 1212.000000 | 1212 | 97.465000 | 2130 | 2839 | 1 | chr2A.!!$F2 | 709 |
22 | TraesCS3A01G467700 | chr6A | 520808980 | 520809688 | 708 | False | 1216.000000 | 1216 | 97.606000 | 2131 | 2839 | 1 | chr6A.!!$F3 | 708 |
23 | TraesCS3A01G467700 | chr6A | 520821546 | 520822253 | 707 | False | 1203.000000 | 1203 | 97.320000 | 2132 | 2839 | 1 | chr6A.!!$F4 | 707 |
24 | TraesCS3A01G467700 | chr6A | 520775340 | 520776049 | 709 | False | 1201.000000 | 1201 | 97.187000 | 2130 | 2839 | 1 | chr6A.!!$F1 | 709 |
25 | TraesCS3A01G467700 | chr6A | 520796410 | 520797119 | 709 | False | 1190.000000 | 1190 | 96.906000 | 2130 | 2839 | 1 | chr6A.!!$F2 | 709 |
26 | TraesCS3A01G467700 | chr7A | 649096116 | 649096826 | 710 | False | 1214.000000 | 1214 | 97.468000 | 2129 | 2839 | 1 | chr7A.!!$F2 | 710 |
27 | TraesCS3A01G467700 | chrUn | 408040744 | 408041806 | 1062 | False | 789.000000 | 789 | 80.829000 | 3527 | 4566 | 1 | chrUn.!!$F2 | 1039 |
28 | TraesCS3A01G467700 | chr4D | 503639118 | 503640077 | 959 | False | 202.000000 | 211 | 81.810000 | 1004 | 3143 | 2 | chr4D.!!$F1 | 2139 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
62 | 63 | 0.032130 | ACGCTATACCAGTCCATGCG | 59.968 | 55.000 | 0.0 | 0.00 | 46.02 | 4.73 | F |
371 | 372 | 0.035820 | TTCGATTTCACTTCCCGGGG | 60.036 | 55.000 | 23.5 | 6.77 | 0.00 | 5.73 | F |
776 | 782 | 0.108804 | TTTCCCATCTCGTCTCACGC | 60.109 | 55.000 | 0.0 | 0.00 | 42.21 | 5.34 | F |
968 | 1022 | 0.758685 | CCATCGGCTTCTCCTCCTCT | 60.759 | 60.000 | 0.0 | 0.00 | 0.00 | 3.69 | F |
1830 | 5174 | 2.675317 | GCAGGAGTACAAGCTCGACATT | 60.675 | 50.000 | 0.0 | 0.00 | 36.41 | 2.71 | F |
2609 | 7116 | 3.242518 | CGAATGTGTCTCGCTAAGTCAA | 58.757 | 45.455 | 0.0 | 0.00 | 0.00 | 3.18 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1568 | 4788 | 2.664568 | TCGTACGTGCTAAGTCAAATGC | 59.335 | 45.455 | 16.05 | 0.0 | 0.00 | 3.56 | R |
1744 | 5063 | 3.259123 | ACAAGGAAATCACCCAATGAAGC | 59.741 | 43.478 | 0.00 | 0.0 | 41.93 | 3.86 | R |
2625 | 7132 | 2.733956 | ACGCATTATTTGGGACATGGT | 58.266 | 42.857 | 0.00 | 0.0 | 40.62 | 3.55 | R |
2909 | 7421 | 6.211184 | TCAACAAATCATACTTGAGCCCAAAT | 59.789 | 34.615 | 0.00 | 0.0 | 34.73 | 2.32 | R |
3742 | 12018 | 1.216941 | GGACGACCGAAAGCACGAAA | 61.217 | 55.000 | 0.00 | 0.0 | 35.09 | 3.46 | R |
3845 | 12121 | 1.006832 | GTGACGGCAAATATGAGCGT | 58.993 | 50.000 | 0.00 | 0.0 | 0.00 | 5.07 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
41 | 42 | 2.420628 | TGCTTTTTGGATGAGCAACG | 57.579 | 45.000 | 0.00 | 0.00 | 42.89 | 4.10 |
42 | 43 | 1.952990 | TGCTTTTTGGATGAGCAACGA | 59.047 | 42.857 | 0.00 | 0.00 | 42.89 | 3.85 |
43 | 44 | 2.360483 | TGCTTTTTGGATGAGCAACGAA | 59.640 | 40.909 | 0.00 | 0.00 | 42.89 | 3.85 |
44 | 45 | 2.726241 | GCTTTTTGGATGAGCAACGAAC | 59.274 | 45.455 | 0.00 | 0.00 | 36.45 | 3.95 |
45 | 46 | 2.679355 | TTTTGGATGAGCAACGAACG | 57.321 | 45.000 | 0.00 | 0.00 | 0.00 | 3.95 |
46 | 47 | 0.237235 | TTTGGATGAGCAACGAACGC | 59.763 | 50.000 | 0.00 | 0.00 | 0.00 | 4.84 |
47 | 48 | 0.602638 | TTGGATGAGCAACGAACGCT | 60.603 | 50.000 | 0.00 | 0.00 | 44.10 | 5.07 |
48 | 49 | 0.245266 | TGGATGAGCAACGAACGCTA | 59.755 | 50.000 | 0.00 | 0.00 | 40.63 | 4.26 |
49 | 50 | 1.134818 | TGGATGAGCAACGAACGCTAT | 60.135 | 47.619 | 0.00 | 0.00 | 40.63 | 2.97 |
50 | 51 | 2.100087 | TGGATGAGCAACGAACGCTATA | 59.900 | 45.455 | 0.00 | 0.00 | 40.63 | 1.31 |
51 | 52 | 2.471743 | GGATGAGCAACGAACGCTATAC | 59.528 | 50.000 | 0.00 | 0.00 | 40.63 | 1.47 |
52 | 53 | 1.917273 | TGAGCAACGAACGCTATACC | 58.083 | 50.000 | 0.00 | 0.00 | 40.63 | 2.73 |
53 | 54 | 1.202817 | TGAGCAACGAACGCTATACCA | 59.797 | 47.619 | 0.00 | 0.00 | 40.63 | 3.25 |
54 | 55 | 1.852895 | GAGCAACGAACGCTATACCAG | 59.147 | 52.381 | 0.00 | 0.00 | 40.63 | 4.00 |
55 | 56 | 1.203994 | AGCAACGAACGCTATACCAGT | 59.796 | 47.619 | 0.00 | 0.00 | 38.15 | 4.00 |
56 | 57 | 1.587034 | GCAACGAACGCTATACCAGTC | 59.413 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
57 | 58 | 2.190981 | CAACGAACGCTATACCAGTCC | 58.809 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
58 | 59 | 1.466856 | ACGAACGCTATACCAGTCCA | 58.533 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
59 | 60 | 2.029623 | ACGAACGCTATACCAGTCCAT | 58.970 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
60 | 61 | 2.223735 | ACGAACGCTATACCAGTCCATG | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
61 | 62 | 2.135933 | GAACGCTATACCAGTCCATGC | 58.864 | 52.381 | 0.00 | 0.00 | 0.00 | 4.06 |
62 | 63 | 0.032130 | ACGCTATACCAGTCCATGCG | 59.968 | 55.000 | 0.00 | 0.00 | 46.02 | 4.73 |
63 | 64 | 1.284982 | CGCTATACCAGTCCATGCGC | 61.285 | 60.000 | 0.00 | 0.00 | 35.77 | 6.09 |
64 | 65 | 0.249868 | GCTATACCAGTCCATGCGCA | 60.250 | 55.000 | 14.96 | 14.96 | 0.00 | 6.09 |
65 | 66 | 1.788258 | CTATACCAGTCCATGCGCAG | 58.212 | 55.000 | 18.32 | 8.11 | 0.00 | 5.18 |
78 | 79 | 3.075998 | CGCAGCACACACGAGATC | 58.924 | 61.111 | 0.00 | 0.00 | 0.00 | 2.75 |
79 | 80 | 1.445066 | CGCAGCACACACGAGATCT | 60.445 | 57.895 | 0.00 | 0.00 | 0.00 | 2.75 |
80 | 81 | 1.681025 | CGCAGCACACACGAGATCTG | 61.681 | 60.000 | 0.00 | 0.00 | 0.00 | 2.90 |
81 | 82 | 0.668706 | GCAGCACACACGAGATCTGT | 60.669 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
82 | 83 | 1.344458 | CAGCACACACGAGATCTGTC | 58.656 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
83 | 84 | 0.109551 | AGCACACACGAGATCTGTCG | 60.110 | 55.000 | 0.00 | 0.44 | 45.76 | 4.35 |
84 | 85 | 1.678269 | GCACACACGAGATCTGTCGC | 61.678 | 60.000 | 0.00 | 0.00 | 44.06 | 5.19 |
90 | 91 | 3.889044 | GAGATCTGTCGCGGGCGA | 61.889 | 66.667 | 12.26 | 12.26 | 46.87 | 5.54 |
120 | 121 | 4.767255 | GTGCTGCGGGTGGAGAGG | 62.767 | 72.222 | 0.00 | 0.00 | 35.14 | 3.69 |
123 | 124 | 3.775654 | CTGCGGGTGGAGAGGGAC | 61.776 | 72.222 | 0.00 | 0.00 | 35.14 | 4.46 |
128 | 129 | 3.003763 | GGTGGAGAGGGACGCCTT | 61.004 | 66.667 | 0.00 | 0.00 | 39.24 | 4.35 |
129 | 130 | 2.266055 | GTGGAGAGGGACGCCTTG | 59.734 | 66.667 | 0.00 | 0.00 | 39.24 | 3.61 |
130 | 131 | 2.203788 | TGGAGAGGGACGCCTTGT | 60.204 | 61.111 | 0.00 | 0.00 | 39.24 | 3.16 |
131 | 132 | 1.841556 | TGGAGAGGGACGCCTTGTT | 60.842 | 57.895 | 0.00 | 0.00 | 39.24 | 2.83 |
132 | 133 | 1.079057 | GGAGAGGGACGCCTTGTTC | 60.079 | 63.158 | 0.00 | 0.00 | 35.57 | 3.18 |
133 | 134 | 1.446272 | GAGAGGGACGCCTTGTTCG | 60.446 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
134 | 135 | 3.119096 | GAGGGACGCCTTGTTCGC | 61.119 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
140 | 141 | 2.509336 | CGCCTTGTTCGCGGAGAT | 60.509 | 61.111 | 6.13 | 0.00 | 45.80 | 2.75 |
141 | 142 | 2.100631 | CGCCTTGTTCGCGGAGATT | 61.101 | 57.895 | 6.13 | 0.00 | 45.80 | 2.40 |
142 | 143 | 1.425428 | GCCTTGTTCGCGGAGATTG | 59.575 | 57.895 | 6.13 | 0.00 | 0.00 | 2.67 |
143 | 144 | 1.019278 | GCCTTGTTCGCGGAGATTGA | 61.019 | 55.000 | 6.13 | 0.00 | 0.00 | 2.57 |
144 | 145 | 0.721718 | CCTTGTTCGCGGAGATTGAC | 59.278 | 55.000 | 6.13 | 0.00 | 0.00 | 3.18 |
145 | 146 | 0.366871 | CTTGTTCGCGGAGATTGACG | 59.633 | 55.000 | 6.13 | 0.00 | 0.00 | 4.35 |
150 | 151 | 2.956964 | GCGGAGATTGACGCGGAG | 60.957 | 66.667 | 12.47 | 0.00 | 46.58 | 4.63 |
151 | 152 | 2.278857 | CGGAGATTGACGCGGAGG | 60.279 | 66.667 | 12.47 | 0.00 | 0.00 | 4.30 |
152 | 153 | 2.893398 | GGAGATTGACGCGGAGGT | 59.107 | 61.111 | 12.47 | 0.00 | 0.00 | 3.85 |
153 | 154 | 1.519455 | GGAGATTGACGCGGAGGTG | 60.519 | 63.158 | 12.47 | 0.00 | 0.00 | 4.00 |
154 | 155 | 1.511305 | GAGATTGACGCGGAGGTGA | 59.489 | 57.895 | 12.47 | 0.00 | 0.00 | 4.02 |
155 | 156 | 0.802607 | GAGATTGACGCGGAGGTGAC | 60.803 | 60.000 | 12.47 | 0.00 | 0.00 | 3.67 |
156 | 157 | 1.810030 | GATTGACGCGGAGGTGACC | 60.810 | 63.158 | 12.47 | 0.00 | 0.00 | 4.02 |
164 | 165 | 4.436368 | GGAGGTGACCGAAGAGGA | 57.564 | 61.111 | 0.00 | 0.00 | 45.00 | 3.71 |
165 | 166 | 2.903404 | GGAGGTGACCGAAGAGGAT | 58.097 | 57.895 | 0.00 | 0.00 | 45.00 | 3.24 |
166 | 167 | 2.068834 | GGAGGTGACCGAAGAGGATA | 57.931 | 55.000 | 0.00 | 0.00 | 45.00 | 2.59 |
167 | 168 | 1.682323 | GGAGGTGACCGAAGAGGATAC | 59.318 | 57.143 | 0.00 | 0.00 | 45.00 | 2.24 |
168 | 169 | 2.376109 | GAGGTGACCGAAGAGGATACA | 58.624 | 52.381 | 0.00 | 0.00 | 45.00 | 2.29 |
169 | 170 | 2.099427 | GAGGTGACCGAAGAGGATACAC | 59.901 | 54.545 | 0.00 | 0.00 | 45.00 | 2.90 |
170 | 171 | 1.822990 | GGTGACCGAAGAGGATACACA | 59.177 | 52.381 | 0.00 | 0.00 | 45.00 | 3.72 |
171 | 172 | 2.159226 | GGTGACCGAAGAGGATACACAG | 60.159 | 54.545 | 0.00 | 0.00 | 45.00 | 3.66 |
172 | 173 | 2.100197 | TGACCGAAGAGGATACACAGG | 58.900 | 52.381 | 0.00 | 0.00 | 45.00 | 4.00 |
173 | 174 | 0.824759 | ACCGAAGAGGATACACAGGC | 59.175 | 55.000 | 0.00 | 0.00 | 45.00 | 4.85 |
174 | 175 | 0.249073 | CCGAAGAGGATACACAGGCG | 60.249 | 60.000 | 0.00 | 0.00 | 45.00 | 5.52 |
175 | 176 | 0.738975 | CGAAGAGGATACACAGGCGA | 59.261 | 55.000 | 0.00 | 0.00 | 41.41 | 5.54 |
176 | 177 | 1.534175 | CGAAGAGGATACACAGGCGAC | 60.534 | 57.143 | 0.00 | 0.00 | 41.41 | 5.19 |
177 | 178 | 0.824759 | AAGAGGATACACAGGCGACC | 59.175 | 55.000 | 0.00 | 0.00 | 41.41 | 4.79 |
178 | 179 | 1.065928 | GAGGATACACAGGCGACCG | 59.934 | 63.158 | 0.00 | 0.00 | 41.41 | 4.79 |
179 | 180 | 1.379443 | AGGATACACAGGCGACCGA | 60.379 | 57.895 | 0.00 | 0.00 | 41.41 | 4.69 |
180 | 181 | 1.226888 | GGATACACAGGCGACCGAC | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
181 | 182 | 1.226888 | GATACACAGGCGACCGACC | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
182 | 183 | 1.664321 | GATACACAGGCGACCGACCT | 61.664 | 60.000 | 0.00 | 0.00 | 38.35 | 3.85 |
183 | 184 | 0.394762 | ATACACAGGCGACCGACCTA | 60.395 | 55.000 | 5.39 | 0.00 | 35.10 | 3.08 |
184 | 185 | 0.394762 | TACACAGGCGACCGACCTAT | 60.395 | 55.000 | 5.39 | 0.00 | 35.10 | 2.57 |
185 | 186 | 1.065928 | CACAGGCGACCGACCTATC | 59.934 | 63.158 | 5.39 | 0.00 | 35.10 | 2.08 |
186 | 187 | 1.379443 | ACAGGCGACCGACCTATCA | 60.379 | 57.895 | 5.39 | 0.00 | 35.10 | 2.15 |
187 | 188 | 0.755698 | ACAGGCGACCGACCTATCAT | 60.756 | 55.000 | 5.39 | 0.00 | 35.10 | 2.45 |
188 | 189 | 0.319040 | CAGGCGACCGACCTATCATG | 60.319 | 60.000 | 5.39 | 0.00 | 35.10 | 3.07 |
189 | 190 | 1.006102 | GGCGACCGACCTATCATGG | 60.006 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
190 | 191 | 1.461091 | GGCGACCGACCTATCATGGA | 61.461 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
191 | 192 | 0.318784 | GCGACCGACCTATCATGGAC | 60.319 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
192 | 193 | 0.040336 | CGACCGACCTATCATGGACG | 60.040 | 60.000 | 0.00 | 0.00 | 42.91 | 4.79 |
195 | 196 | 3.569916 | CGACCTATCATGGACGGTG | 57.430 | 57.895 | 5.62 | 0.00 | 40.47 | 4.94 |
196 | 197 | 0.597637 | CGACCTATCATGGACGGTGC | 60.598 | 60.000 | 5.62 | 0.00 | 40.47 | 5.01 |
197 | 198 | 0.249911 | GACCTATCATGGACGGTGCC | 60.250 | 60.000 | 5.62 | 0.00 | 0.00 | 5.01 |
198 | 199 | 0.980754 | ACCTATCATGGACGGTGCCA | 60.981 | 55.000 | 0.00 | 0.00 | 43.23 | 4.92 |
199 | 200 | 0.180171 | CCTATCATGGACGGTGCCAA | 59.820 | 55.000 | 0.00 | 0.00 | 42.16 | 4.52 |
200 | 201 | 1.299541 | CTATCATGGACGGTGCCAAC | 58.700 | 55.000 | 0.00 | 0.00 | 42.16 | 3.77 |
201 | 202 | 0.908910 | TATCATGGACGGTGCCAACT | 59.091 | 50.000 | 0.00 | 0.00 | 42.16 | 3.16 |
202 | 203 | 0.392998 | ATCATGGACGGTGCCAACTC | 60.393 | 55.000 | 0.00 | 0.00 | 42.16 | 3.01 |
203 | 204 | 1.003355 | CATGGACGGTGCCAACTCT | 60.003 | 57.895 | 0.00 | 0.00 | 42.16 | 3.24 |
204 | 205 | 1.003355 | ATGGACGGTGCCAACTCTG | 60.003 | 57.895 | 0.00 | 0.00 | 42.16 | 3.35 |
205 | 206 | 1.768684 | ATGGACGGTGCCAACTCTGT | 61.769 | 55.000 | 0.00 | 0.00 | 42.16 | 3.41 |
206 | 207 | 1.961277 | GGACGGTGCCAACTCTGTG | 60.961 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
207 | 208 | 1.227556 | GACGGTGCCAACTCTGTGT | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.72 |
208 | 209 | 0.814010 | GACGGTGCCAACTCTGTGTT | 60.814 | 55.000 | 0.00 | 0.00 | 39.92 | 3.32 |
235 | 236 | 4.364409 | GCCACCGTTGTTCGCGTC | 62.364 | 66.667 | 5.77 | 1.06 | 38.35 | 5.19 |
236 | 237 | 3.708734 | CCACCGTTGTTCGCGTCC | 61.709 | 66.667 | 5.77 | 0.00 | 38.35 | 4.79 |
237 | 238 | 3.708734 | CACCGTTGTTCGCGTCCC | 61.709 | 66.667 | 5.77 | 0.00 | 38.35 | 4.46 |
238 | 239 | 4.224274 | ACCGTTGTTCGCGTCCCA | 62.224 | 61.111 | 5.77 | 0.00 | 38.35 | 4.37 |
239 | 240 | 3.708734 | CCGTTGTTCGCGTCCCAC | 61.709 | 66.667 | 5.77 | 0.00 | 38.35 | 4.61 |
240 | 241 | 3.708734 | CGTTGTTCGCGTCCCACC | 61.709 | 66.667 | 5.77 | 0.00 | 0.00 | 4.61 |
241 | 242 | 3.708734 | GTTGTTCGCGTCCCACCG | 61.709 | 66.667 | 5.77 | 0.00 | 0.00 | 4.94 |
242 | 243 | 3.914117 | TTGTTCGCGTCCCACCGA | 61.914 | 61.111 | 5.77 | 0.00 | 0.00 | 4.69 |
243 | 244 | 4.651008 | TGTTCGCGTCCCACCGAC | 62.651 | 66.667 | 5.77 | 0.00 | 38.21 | 4.79 |
244 | 245 | 4.651008 | GTTCGCGTCCCACCGACA | 62.651 | 66.667 | 5.77 | 0.00 | 42.07 | 4.35 |
245 | 246 | 4.651008 | TTCGCGTCCCACCGACAC | 62.651 | 66.667 | 5.77 | 0.00 | 42.07 | 3.67 |
249 | 250 | 4.712425 | CGTCCCACCGACACGACC | 62.712 | 72.222 | 0.00 | 0.00 | 42.07 | 4.79 |
250 | 251 | 3.608662 | GTCCCACCGACACGACCA | 61.609 | 66.667 | 0.00 | 0.00 | 41.54 | 4.02 |
251 | 252 | 2.838693 | TCCCACCGACACGACCAA | 60.839 | 61.111 | 0.00 | 0.00 | 0.00 | 3.67 |
252 | 253 | 2.357034 | CCCACCGACACGACCAAG | 60.357 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
253 | 254 | 2.732016 | CCACCGACACGACCAAGA | 59.268 | 61.111 | 0.00 | 0.00 | 0.00 | 3.02 |
254 | 255 | 1.292223 | CCACCGACACGACCAAGAT | 59.708 | 57.895 | 0.00 | 0.00 | 0.00 | 2.40 |
255 | 256 | 1.014044 | CCACCGACACGACCAAGATG | 61.014 | 60.000 | 0.00 | 0.00 | 0.00 | 2.90 |
256 | 257 | 1.374252 | ACCGACACGACCAAGATGC | 60.374 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 |
257 | 258 | 1.079819 | CCGACACGACCAAGATGCT | 60.080 | 57.895 | 0.00 | 0.00 | 0.00 | 3.79 |
258 | 259 | 1.354337 | CCGACACGACCAAGATGCTG | 61.354 | 60.000 | 0.00 | 0.00 | 0.00 | 4.41 |
259 | 260 | 1.354337 | CGACACGACCAAGATGCTGG | 61.354 | 60.000 | 0.00 | 0.00 | 42.68 | 4.85 |
260 | 261 | 0.037326 | GACACGACCAAGATGCTGGA | 60.037 | 55.000 | 0.00 | 0.00 | 38.96 | 3.86 |
261 | 262 | 0.320771 | ACACGACCAAGATGCTGGAC | 60.321 | 55.000 | 0.00 | 0.00 | 38.96 | 4.02 |
262 | 263 | 1.021390 | CACGACCAAGATGCTGGACC | 61.021 | 60.000 | 0.00 | 0.00 | 38.96 | 4.46 |
263 | 264 | 1.296392 | CGACCAAGATGCTGGACCA | 59.704 | 57.895 | 0.00 | 0.00 | 38.96 | 4.02 |
264 | 265 | 0.107508 | CGACCAAGATGCTGGACCAT | 60.108 | 55.000 | 0.00 | 0.00 | 38.96 | 3.55 |
265 | 266 | 1.673168 | GACCAAGATGCTGGACCATC | 58.327 | 55.000 | 0.00 | 0.00 | 41.47 | 3.51 |
266 | 267 | 0.257039 | ACCAAGATGCTGGACCATCC | 59.743 | 55.000 | 0.00 | 0.00 | 41.98 | 3.51 |
267 | 268 | 0.256752 | CCAAGATGCTGGACCATCCA | 59.743 | 55.000 | 0.00 | 0.00 | 45.98 | 3.41 |
268 | 269 | 1.386533 | CAAGATGCTGGACCATCCAC | 58.613 | 55.000 | 0.00 | 0.00 | 42.67 | 4.02 |
269 | 270 | 0.107508 | AAGATGCTGGACCATCCACG | 60.108 | 55.000 | 0.00 | 0.00 | 42.67 | 4.94 |
270 | 271 | 1.221840 | GATGCTGGACCATCCACGT | 59.778 | 57.895 | 0.00 | 0.00 | 42.67 | 4.49 |
271 | 272 | 1.078214 | ATGCTGGACCATCCACGTG | 60.078 | 57.895 | 9.08 | 9.08 | 42.67 | 4.49 |
272 | 273 | 1.552799 | ATGCTGGACCATCCACGTGA | 61.553 | 55.000 | 19.30 | 3.36 | 42.67 | 4.35 |
273 | 274 | 1.448540 | GCTGGACCATCCACGTGAG | 60.449 | 63.158 | 19.30 | 7.45 | 42.67 | 3.51 |
274 | 275 | 1.888436 | GCTGGACCATCCACGTGAGA | 61.888 | 60.000 | 19.30 | 13.16 | 42.67 | 3.27 |
275 | 276 | 0.108615 | CTGGACCATCCACGTGAGAC | 60.109 | 60.000 | 19.30 | 3.10 | 42.67 | 3.36 |
276 | 277 | 0.541998 | TGGACCATCCACGTGAGACT | 60.542 | 55.000 | 19.30 | 0.00 | 42.67 | 3.24 |
277 | 278 | 0.173708 | GGACCATCCACGTGAGACTC | 59.826 | 60.000 | 19.30 | 8.07 | 36.28 | 3.36 |
278 | 279 | 0.888619 | GACCATCCACGTGAGACTCA | 59.111 | 55.000 | 19.30 | 0.00 | 0.00 | 3.41 |
279 | 280 | 0.891373 | ACCATCCACGTGAGACTCAG | 59.109 | 55.000 | 19.30 | 3.02 | 0.00 | 3.35 |
280 | 281 | 0.174389 | CCATCCACGTGAGACTCAGG | 59.826 | 60.000 | 19.30 | 20.79 | 38.16 | 3.86 |
281 | 282 | 0.459237 | CATCCACGTGAGACTCAGGC | 60.459 | 60.000 | 21.99 | 4.23 | 35.83 | 4.85 |
282 | 283 | 1.938657 | ATCCACGTGAGACTCAGGCG | 61.939 | 60.000 | 21.99 | 17.15 | 35.83 | 5.52 |
283 | 284 | 2.626780 | CCACGTGAGACTCAGGCGA | 61.627 | 63.158 | 21.99 | 0.00 | 35.83 | 5.54 |
284 | 285 | 1.154131 | CACGTGAGACTCAGGCGAG | 60.154 | 63.158 | 21.99 | 10.88 | 45.49 | 5.03 |
285 | 286 | 2.336478 | ACGTGAGACTCAGGCGAGG | 61.336 | 63.158 | 21.99 | 2.03 | 44.17 | 4.63 |
286 | 287 | 2.041115 | CGTGAGACTCAGGCGAGGA | 61.041 | 63.158 | 11.93 | 0.00 | 44.17 | 3.71 |
287 | 288 | 1.587043 | CGTGAGACTCAGGCGAGGAA | 61.587 | 60.000 | 11.93 | 0.00 | 44.17 | 3.36 |
288 | 289 | 0.172352 | GTGAGACTCAGGCGAGGAAG | 59.828 | 60.000 | 5.10 | 0.00 | 44.17 | 3.46 |
289 | 290 | 0.038310 | TGAGACTCAGGCGAGGAAGA | 59.962 | 55.000 | 0.00 | 0.00 | 44.17 | 2.87 |
290 | 291 | 0.738389 | GAGACTCAGGCGAGGAAGAG | 59.262 | 60.000 | 10.29 | 0.00 | 44.17 | 2.85 |
291 | 292 | 0.039035 | AGACTCAGGCGAGGAAGAGT | 59.961 | 55.000 | 10.29 | 0.00 | 44.17 | 3.24 |
292 | 293 | 1.282447 | AGACTCAGGCGAGGAAGAGTA | 59.718 | 52.381 | 10.29 | 0.00 | 44.17 | 2.59 |
293 | 294 | 2.092103 | AGACTCAGGCGAGGAAGAGTAT | 60.092 | 50.000 | 10.29 | 0.00 | 44.17 | 2.12 |
294 | 295 | 2.292292 | GACTCAGGCGAGGAAGAGTATC | 59.708 | 54.545 | 10.29 | 0.00 | 44.17 | 2.24 |
295 | 296 | 2.302260 | CTCAGGCGAGGAAGAGTATCA | 58.698 | 52.381 | 0.00 | 0.00 | 34.41 | 2.15 |
296 | 297 | 2.025155 | TCAGGCGAGGAAGAGTATCAC | 58.975 | 52.381 | 0.00 | 0.00 | 37.82 | 3.06 |
297 | 298 | 1.751351 | CAGGCGAGGAAGAGTATCACA | 59.249 | 52.381 | 0.00 | 0.00 | 37.82 | 3.58 |
298 | 299 | 2.363680 | CAGGCGAGGAAGAGTATCACAT | 59.636 | 50.000 | 0.00 | 0.00 | 37.82 | 3.21 |
299 | 300 | 2.363680 | AGGCGAGGAAGAGTATCACATG | 59.636 | 50.000 | 0.00 | 0.00 | 37.82 | 3.21 |
300 | 301 | 2.546795 | GGCGAGGAAGAGTATCACATGG | 60.547 | 54.545 | 0.00 | 0.00 | 37.82 | 3.66 |
301 | 302 | 2.546795 | GCGAGGAAGAGTATCACATGGG | 60.547 | 54.545 | 0.00 | 0.00 | 37.82 | 4.00 |
302 | 303 | 2.959030 | CGAGGAAGAGTATCACATGGGA | 59.041 | 50.000 | 0.00 | 0.00 | 37.82 | 4.37 |
303 | 304 | 3.243569 | CGAGGAAGAGTATCACATGGGAC | 60.244 | 52.174 | 0.00 | 0.00 | 37.82 | 4.46 |
304 | 305 | 2.695666 | AGGAAGAGTATCACATGGGACG | 59.304 | 50.000 | 0.00 | 0.00 | 37.82 | 4.79 |
305 | 306 | 2.474816 | GAAGAGTATCACATGGGACGC | 58.525 | 52.381 | 0.00 | 0.00 | 37.82 | 5.19 |
306 | 307 | 0.753262 | AGAGTATCACATGGGACGCC | 59.247 | 55.000 | 0.00 | 0.00 | 37.82 | 5.68 |
307 | 308 | 0.464036 | GAGTATCACATGGGACGCCA | 59.536 | 55.000 | 0.00 | 0.00 | 33.17 | 5.69 |
308 | 309 | 0.178068 | AGTATCACATGGGACGCCAC | 59.822 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
309 | 310 | 0.178068 | GTATCACATGGGACGCCACT | 59.822 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
310 | 311 | 1.411246 | GTATCACATGGGACGCCACTA | 59.589 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
311 | 312 | 1.131638 | ATCACATGGGACGCCACTAT | 58.868 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
312 | 313 | 0.177836 | TCACATGGGACGCCACTATG | 59.822 | 55.000 | 0.00 | 0.00 | 0.00 | 2.23 |
313 | 314 | 0.815213 | CACATGGGACGCCACTATGG | 60.815 | 60.000 | 0.00 | 0.00 | 41.55 | 2.74 |
322 | 323 | 4.986467 | CCACTATGGCTTGGGTCC | 57.014 | 61.111 | 0.00 | 0.00 | 0.00 | 4.46 |
323 | 324 | 1.227383 | CCACTATGGCTTGGGTCCC | 59.773 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
324 | 325 | 1.570857 | CCACTATGGCTTGGGTCCCA | 61.571 | 60.000 | 6.47 | 6.47 | 35.21 | 4.37 |
325 | 326 | 0.107017 | CACTATGGCTTGGGTCCCAG | 60.107 | 60.000 | 11.40 | 6.84 | 33.81 | 4.45 |
326 | 327 | 1.281925 | ACTATGGCTTGGGTCCCAGG | 61.282 | 60.000 | 15.83 | 15.83 | 33.81 | 4.45 |
327 | 328 | 0.988145 | CTATGGCTTGGGTCCCAGGA | 60.988 | 60.000 | 23.95 | 3.93 | 31.89 | 3.86 |
328 | 329 | 0.551377 | TATGGCTTGGGTCCCAGGAA | 60.551 | 55.000 | 23.95 | 10.98 | 31.89 | 3.36 |
329 | 330 | 1.867595 | ATGGCTTGGGTCCCAGGAAG | 61.868 | 60.000 | 23.95 | 13.66 | 31.89 | 3.46 |
330 | 331 | 2.356667 | GCTTGGGTCCCAGGAAGG | 59.643 | 66.667 | 23.95 | 8.13 | 31.89 | 3.46 |
331 | 332 | 2.356667 | CTTGGGTCCCAGGAAGGC | 59.643 | 66.667 | 15.06 | 0.00 | 31.89 | 4.35 |
332 | 333 | 3.264845 | TTGGGTCCCAGGAAGGCC | 61.265 | 66.667 | 11.40 | 0.00 | 33.81 | 5.19 |
333 | 334 | 4.608514 | TGGGTCCCAGGAAGGCCA | 62.609 | 66.667 | 6.47 | 0.00 | 36.29 | 5.36 |
334 | 335 | 4.048470 | GGGTCCCAGGAAGGCCAC | 62.048 | 72.222 | 5.01 | 0.00 | 36.29 | 5.01 |
335 | 336 | 2.936032 | GGTCCCAGGAAGGCCACT | 60.936 | 66.667 | 5.01 | 0.00 | 36.29 | 4.00 |
336 | 337 | 2.671682 | GTCCCAGGAAGGCCACTC | 59.328 | 66.667 | 5.01 | 0.00 | 36.29 | 3.51 |
337 | 338 | 2.610859 | TCCCAGGAAGGCCACTCC | 60.611 | 66.667 | 14.69 | 14.69 | 36.29 | 3.85 |
339 | 340 | 1.306997 | CCCAGGAAGGCCACTCCTA | 60.307 | 63.158 | 22.49 | 0.00 | 46.94 | 2.94 |
340 | 341 | 0.695803 | CCCAGGAAGGCCACTCCTAT | 60.696 | 60.000 | 22.49 | 3.36 | 46.94 | 2.57 |
341 | 342 | 1.216990 | CCAGGAAGGCCACTCCTATT | 58.783 | 55.000 | 22.49 | 0.00 | 46.94 | 1.73 |
342 | 343 | 1.141858 | CCAGGAAGGCCACTCCTATTC | 59.858 | 57.143 | 22.49 | 7.95 | 46.94 | 1.75 |
343 | 344 | 2.122768 | CAGGAAGGCCACTCCTATTCT | 58.877 | 52.381 | 22.49 | 2.02 | 46.94 | 2.40 |
344 | 345 | 2.103941 | CAGGAAGGCCACTCCTATTCTC | 59.896 | 54.545 | 22.49 | 3.35 | 46.94 | 2.87 |
345 | 346 | 1.418264 | GGAAGGCCACTCCTATTCTCC | 59.582 | 57.143 | 15.12 | 0.00 | 46.94 | 3.71 |
346 | 347 | 2.403561 | GAAGGCCACTCCTATTCTCCT | 58.596 | 52.381 | 5.01 | 0.00 | 46.94 | 3.69 |
347 | 348 | 2.095604 | AGGCCACTCCTATTCTCCTC | 57.904 | 55.000 | 5.01 | 0.00 | 45.41 | 3.71 |
348 | 349 | 1.052617 | GGCCACTCCTATTCTCCTCC | 58.947 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
349 | 350 | 1.413808 | GGCCACTCCTATTCTCCTCCT | 60.414 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
350 | 351 | 1.967779 | GCCACTCCTATTCTCCTCCTC | 59.032 | 57.143 | 0.00 | 0.00 | 0.00 | 3.71 |
351 | 352 | 2.604139 | CCACTCCTATTCTCCTCCTCC | 58.396 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
352 | 353 | 2.178984 | CCACTCCTATTCTCCTCCTCCT | 59.821 | 54.545 | 0.00 | 0.00 | 0.00 | 3.69 |
353 | 354 | 3.374762 | CCACTCCTATTCTCCTCCTCCTT | 60.375 | 52.174 | 0.00 | 0.00 | 0.00 | 3.36 |
354 | 355 | 3.895041 | CACTCCTATTCTCCTCCTCCTTC | 59.105 | 52.174 | 0.00 | 0.00 | 0.00 | 3.46 |
355 | 356 | 3.153919 | CTCCTATTCTCCTCCTCCTTCG | 58.846 | 54.545 | 0.00 | 0.00 | 0.00 | 3.79 |
356 | 357 | 2.784095 | TCCTATTCTCCTCCTCCTTCGA | 59.216 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
357 | 358 | 3.399644 | TCCTATTCTCCTCCTCCTTCGAT | 59.600 | 47.826 | 0.00 | 0.00 | 0.00 | 3.59 |
358 | 359 | 4.140900 | TCCTATTCTCCTCCTCCTTCGATT | 60.141 | 45.833 | 0.00 | 0.00 | 0.00 | 3.34 |
359 | 360 | 4.591072 | CCTATTCTCCTCCTCCTTCGATTT | 59.409 | 45.833 | 0.00 | 0.00 | 0.00 | 2.17 |
360 | 361 | 4.681074 | ATTCTCCTCCTCCTTCGATTTC | 57.319 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
361 | 362 | 3.101643 | TCTCCTCCTCCTTCGATTTCA | 57.898 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
362 | 363 | 2.761208 | TCTCCTCCTCCTTCGATTTCAC | 59.239 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
363 | 364 | 2.763448 | CTCCTCCTCCTTCGATTTCACT | 59.237 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
364 | 365 | 3.173965 | TCCTCCTCCTTCGATTTCACTT | 58.826 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
365 | 366 | 3.195825 | TCCTCCTCCTTCGATTTCACTTC | 59.804 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
366 | 367 | 3.526534 | CTCCTCCTTCGATTTCACTTCC | 58.473 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
367 | 368 | 2.236395 | TCCTCCTTCGATTTCACTTCCC | 59.764 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
368 | 369 | 2.271800 | CTCCTTCGATTTCACTTCCCG | 58.728 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
369 | 370 | 1.066430 | TCCTTCGATTTCACTTCCCGG | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 5.73 |
370 | 371 | 1.369625 | CTTCGATTTCACTTCCCGGG | 58.630 | 55.000 | 16.85 | 16.85 | 0.00 | 5.73 |
371 | 372 | 0.035820 | TTCGATTTCACTTCCCGGGG | 60.036 | 55.000 | 23.50 | 6.77 | 0.00 | 5.73 |
372 | 373 | 2.112815 | CGATTTCACTTCCCGGGGC | 61.113 | 63.158 | 23.50 | 0.00 | 0.00 | 5.80 |
373 | 374 | 1.303282 | GATTTCACTTCCCGGGGCT | 59.697 | 57.895 | 23.50 | 0.00 | 0.00 | 5.19 |
374 | 375 | 0.748367 | GATTTCACTTCCCGGGGCTC | 60.748 | 60.000 | 23.50 | 2.31 | 0.00 | 4.70 |
375 | 376 | 1.497309 | ATTTCACTTCCCGGGGCTCA | 61.497 | 55.000 | 23.50 | 0.00 | 0.00 | 4.26 |
376 | 377 | 2.124507 | TTTCACTTCCCGGGGCTCAG | 62.125 | 60.000 | 23.50 | 14.17 | 0.00 | 3.35 |
377 | 378 | 4.101448 | CACTTCCCGGGGCTCAGG | 62.101 | 72.222 | 23.50 | 3.65 | 0.00 | 3.86 |
378 | 379 | 4.332543 | ACTTCCCGGGGCTCAGGA | 62.333 | 66.667 | 23.50 | 0.00 | 0.00 | 3.86 |
379 | 380 | 3.787001 | CTTCCCGGGGCTCAGGAC | 61.787 | 72.222 | 23.50 | 0.00 | 0.00 | 3.85 |
384 | 385 | 4.760047 | CGGGGCTCAGGACCGTTG | 62.760 | 72.222 | 0.00 | 0.00 | 43.03 | 4.10 |
385 | 386 | 4.410400 | GGGGCTCAGGACCGTTGG | 62.410 | 72.222 | 0.00 | 0.00 | 43.03 | 3.77 |
386 | 387 | 4.410400 | GGGCTCAGGACCGTTGGG | 62.410 | 72.222 | 0.00 | 0.00 | 40.11 | 4.12 |
388 | 389 | 4.021925 | GCTCAGGACCGTTGGGCT | 62.022 | 66.667 | 0.00 | 0.00 | 38.99 | 5.19 |
389 | 390 | 2.750350 | CTCAGGACCGTTGGGCTT | 59.250 | 61.111 | 0.00 | 0.00 | 36.48 | 4.35 |
390 | 391 | 1.672356 | CTCAGGACCGTTGGGCTTG | 60.672 | 63.158 | 0.00 | 0.00 | 39.36 | 4.01 |
391 | 392 | 3.365265 | CAGGACCGTTGGGCTTGC | 61.365 | 66.667 | 0.00 | 0.00 | 29.08 | 4.01 |
392 | 393 | 4.660938 | AGGACCGTTGGGCTTGCC | 62.661 | 66.667 | 2.49 | 2.49 | 36.48 | 4.52 |
395 | 396 | 3.887335 | GACCGTTGGGCTTGCCGTA | 62.887 | 63.158 | 5.49 | 0.00 | 36.48 | 4.02 |
396 | 397 | 2.437716 | CCGTTGGGCTTGCCGTAT | 60.438 | 61.111 | 5.49 | 0.00 | 0.00 | 3.06 |
397 | 398 | 1.153329 | CCGTTGGGCTTGCCGTATA | 60.153 | 57.895 | 5.49 | 0.00 | 0.00 | 1.47 |
398 | 399 | 1.433837 | CCGTTGGGCTTGCCGTATAC | 61.434 | 60.000 | 5.49 | 0.00 | 0.00 | 1.47 |
399 | 400 | 1.758319 | CGTTGGGCTTGCCGTATACG | 61.758 | 60.000 | 18.40 | 18.40 | 39.44 | 3.06 |
416 | 417 | 6.327934 | CGTATACGGGGAAGATATAAAGTGG | 58.672 | 44.000 | 17.61 | 0.00 | 35.37 | 4.00 |
417 | 418 | 5.757099 | ATACGGGGAAGATATAAAGTGGG | 57.243 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
418 | 419 | 3.660959 | ACGGGGAAGATATAAAGTGGGA | 58.339 | 45.455 | 0.00 | 0.00 | 0.00 | 4.37 |
419 | 420 | 4.240323 | ACGGGGAAGATATAAAGTGGGAT | 58.760 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
420 | 421 | 5.408824 | ACGGGGAAGATATAAAGTGGGATA | 58.591 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
421 | 422 | 6.030082 | ACGGGGAAGATATAAAGTGGGATAT | 58.970 | 40.000 | 0.00 | 0.00 | 0.00 | 1.63 |
422 | 423 | 6.070194 | ACGGGGAAGATATAAAGTGGGATATG | 60.070 | 42.308 | 0.00 | 0.00 | 0.00 | 1.78 |
423 | 424 | 6.632672 | CGGGGAAGATATAAAGTGGGATATGG | 60.633 | 46.154 | 0.00 | 0.00 | 0.00 | 2.74 |
424 | 425 | 6.447084 | GGGGAAGATATAAAGTGGGATATGGA | 59.553 | 42.308 | 0.00 | 0.00 | 0.00 | 3.41 |
425 | 426 | 7.339482 | GGGAAGATATAAAGTGGGATATGGAC | 58.661 | 42.308 | 0.00 | 0.00 | 0.00 | 4.02 |
426 | 427 | 7.182930 | GGGAAGATATAAAGTGGGATATGGACT | 59.817 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
427 | 428 | 8.261522 | GGAAGATATAAAGTGGGATATGGACTC | 58.738 | 40.741 | 0.00 | 0.00 | 0.00 | 3.36 |
428 | 429 | 7.741554 | AGATATAAAGTGGGATATGGACTCC | 57.258 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
429 | 430 | 4.891992 | ATAAAGTGGGATATGGACTCCG | 57.108 | 45.455 | 0.00 | 0.00 | 33.29 | 4.63 |
430 | 431 | 0.759346 | AAGTGGGATATGGACTCCGC | 59.241 | 55.000 | 0.00 | 0.00 | 33.29 | 5.54 |
431 | 432 | 1.122019 | AGTGGGATATGGACTCCGCC | 61.122 | 60.000 | 0.00 | 0.00 | 33.29 | 6.13 |
432 | 433 | 1.074850 | TGGGATATGGACTCCGCCA | 60.075 | 57.895 | 0.00 | 0.00 | 43.23 | 5.69 |
433 | 434 | 1.371558 | GGGATATGGACTCCGCCAC | 59.628 | 63.158 | 0.00 | 0.00 | 41.56 | 5.01 |
434 | 435 | 1.006102 | GGATATGGACTCCGCCACG | 60.006 | 63.158 | 0.00 | 0.00 | 41.56 | 4.94 |
435 | 436 | 1.461091 | GGATATGGACTCCGCCACGA | 61.461 | 60.000 | 0.00 | 0.00 | 41.56 | 4.35 |
436 | 437 | 0.318784 | GATATGGACTCCGCCACGAC | 60.319 | 60.000 | 0.00 | 0.00 | 41.56 | 4.34 |
437 | 438 | 1.745320 | ATATGGACTCCGCCACGACC | 61.745 | 60.000 | 0.00 | 0.00 | 41.56 | 4.79 |
458 | 459 | 3.441222 | CCGGCGGTCTTTTAAATTAGGTT | 59.559 | 43.478 | 19.97 | 0.00 | 0.00 | 3.50 |
497 | 499 | 7.485913 | TCCTCGTTTACGTAGTTGAAATATGTC | 59.514 | 37.037 | 0.34 | 0.00 | 37.78 | 3.06 |
553 | 555 | 8.211116 | TGAAATCATTCAGTTTGCACAAAATT | 57.789 | 26.923 | 0.00 | 0.00 | 40.59 | 1.82 |
560 | 562 | 5.531634 | TCAGTTTGCACAAAATTCATCCTC | 58.468 | 37.500 | 0.00 | 0.00 | 31.33 | 3.71 |
563 | 565 | 7.014134 | TCAGTTTGCACAAAATTCATCCTCTTA | 59.986 | 33.333 | 0.00 | 0.00 | 31.33 | 2.10 |
566 | 568 | 8.992073 | GTTTGCACAAAATTCATCCTCTTATTT | 58.008 | 29.630 | 0.00 | 0.00 | 31.33 | 1.40 |
589 | 591 | 5.685195 | AAATTTGCTTCGAAATACATGCG | 57.315 | 34.783 | 0.00 | 0.00 | 0.00 | 4.73 |
590 | 592 | 3.822594 | TTTGCTTCGAAATACATGCGT | 57.177 | 38.095 | 0.00 | 0.00 | 0.00 | 5.24 |
591 | 593 | 2.804421 | TGCTTCGAAATACATGCGTG | 57.196 | 45.000 | 3.82 | 3.82 | 0.00 | 5.34 |
592 | 594 | 2.342179 | TGCTTCGAAATACATGCGTGA | 58.658 | 42.857 | 14.17 | 0.00 | 0.00 | 4.35 |
593 | 595 | 2.739379 | TGCTTCGAAATACATGCGTGAA | 59.261 | 40.909 | 14.17 | 0.00 | 0.00 | 3.18 |
594 | 596 | 3.373748 | TGCTTCGAAATACATGCGTGAAT | 59.626 | 39.130 | 14.17 | 0.00 | 0.00 | 2.57 |
595 | 597 | 3.720818 | GCTTCGAAATACATGCGTGAATG | 59.279 | 43.478 | 14.17 | 0.00 | 0.00 | 2.67 |
596 | 598 | 3.942539 | TCGAAATACATGCGTGAATGG | 57.057 | 42.857 | 14.17 | 0.00 | 31.46 | 3.16 |
597 | 599 | 3.266636 | TCGAAATACATGCGTGAATGGT | 58.733 | 40.909 | 14.17 | 0.00 | 31.46 | 3.55 |
598 | 600 | 3.687212 | TCGAAATACATGCGTGAATGGTT | 59.313 | 39.130 | 14.17 | 0.00 | 31.46 | 3.67 |
599 | 601 | 3.785521 | CGAAATACATGCGTGAATGGTTG | 59.214 | 43.478 | 14.17 | 0.00 | 31.46 | 3.77 |
600 | 602 | 4.671508 | CGAAATACATGCGTGAATGGTTGT | 60.672 | 41.667 | 14.17 | 0.00 | 31.46 | 3.32 |
601 | 603 | 5.446607 | CGAAATACATGCGTGAATGGTTGTA | 60.447 | 40.000 | 14.17 | 0.00 | 31.46 | 2.41 |
602 | 604 | 6.449635 | AAATACATGCGTGAATGGTTGTAT | 57.550 | 33.333 | 14.17 | 0.00 | 33.06 | 2.29 |
603 | 605 | 3.763097 | ACATGCGTGAATGGTTGTATG | 57.237 | 42.857 | 14.17 | 0.00 | 31.46 | 2.39 |
604 | 606 | 2.423185 | ACATGCGTGAATGGTTGTATGG | 59.577 | 45.455 | 14.17 | 0.00 | 31.46 | 2.74 |
605 | 607 | 0.808125 | TGCGTGAATGGTTGTATGGC | 59.192 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
606 | 608 | 0.808125 | GCGTGAATGGTTGTATGGCA | 59.192 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
607 | 609 | 1.202177 | GCGTGAATGGTTGTATGGCAG | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
608 | 610 | 1.401552 | CGTGAATGGTTGTATGGCAGG | 59.598 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
609 | 611 | 1.134946 | GTGAATGGTTGTATGGCAGGC | 59.865 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
610 | 612 | 1.005805 | TGAATGGTTGTATGGCAGGCT | 59.994 | 47.619 | 0.00 | 0.00 | 0.00 | 4.58 |
611 | 613 | 2.102578 | GAATGGTTGTATGGCAGGCTT | 58.897 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
612 | 614 | 1.767759 | ATGGTTGTATGGCAGGCTTC | 58.232 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
613 | 615 | 0.323360 | TGGTTGTATGGCAGGCTTCC | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
614 | 616 | 0.323360 | GGTTGTATGGCAGGCTTCCA | 60.323 | 55.000 | 8.69 | 8.69 | 38.09 | 3.53 |
615 | 617 | 1.686115 | GGTTGTATGGCAGGCTTCCAT | 60.686 | 52.381 | 22.15 | 22.15 | 45.60 | 3.41 |
616 | 618 | 2.422803 | GGTTGTATGGCAGGCTTCCATA | 60.423 | 50.000 | 20.05 | 20.05 | 43.58 | 2.74 |
617 | 619 | 3.490348 | GTTGTATGGCAGGCTTCCATAT | 58.510 | 45.455 | 25.26 | 6.83 | 45.30 | 1.78 |
618 | 620 | 3.423539 | TGTATGGCAGGCTTCCATATC | 57.576 | 47.619 | 25.26 | 18.94 | 45.30 | 1.63 |
626 | 628 | 3.624861 | GCAGGCTTCCATATCATTATCCG | 59.375 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
627 | 629 | 3.624861 | CAGGCTTCCATATCATTATCCGC | 59.375 | 47.826 | 0.00 | 0.00 | 0.00 | 5.54 |
632 | 634 | 2.829120 | TCCATATCATTATCCGCGTCCA | 59.171 | 45.455 | 4.92 | 0.00 | 0.00 | 4.02 |
633 | 635 | 3.259625 | TCCATATCATTATCCGCGTCCAA | 59.740 | 43.478 | 4.92 | 0.00 | 0.00 | 3.53 |
648 | 650 | 3.859252 | GCGTCCAACATTTTTAGGGGTTG | 60.859 | 47.826 | 0.00 | 0.00 | 40.12 | 3.77 |
653 | 655 | 0.534873 | CATTTTTAGGGGTTGGCGGG | 59.465 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
688 | 692 | 1.661197 | CAAGCCGCGTGCACAAAAT | 60.661 | 52.632 | 18.64 | 0.00 | 44.83 | 1.82 |
692 | 696 | 1.875419 | GCCGCGTGCACAAAATTGTC | 61.875 | 55.000 | 18.64 | 0.00 | 39.91 | 3.18 |
744 | 750 | 1.359459 | CCTACCGCGAAGTTTCCTGC | 61.359 | 60.000 | 8.23 | 0.00 | 0.00 | 4.85 |
746 | 752 | 0.389426 | TACCGCGAAGTTTCCTGCTC | 60.389 | 55.000 | 8.23 | 0.00 | 0.00 | 4.26 |
747 | 753 | 1.667830 | CCGCGAAGTTTCCTGCTCA | 60.668 | 57.895 | 8.23 | 0.00 | 0.00 | 4.26 |
748 | 754 | 1.021390 | CCGCGAAGTTTCCTGCTCAT | 61.021 | 55.000 | 8.23 | 0.00 | 0.00 | 2.90 |
749 | 755 | 0.371645 | CGCGAAGTTTCCTGCTCATC | 59.628 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
750 | 756 | 0.729690 | GCGAAGTTTCCTGCTCATCC | 59.270 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
751 | 757 | 1.945819 | GCGAAGTTTCCTGCTCATCCA | 60.946 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
755 | 761 | 2.996631 | AGTTTCCTGCTCATCCATCAC | 58.003 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
757 | 763 | 1.588239 | TTCCTGCTCATCCATCACCT | 58.412 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
758 | 764 | 1.588239 | TCCTGCTCATCCATCACCTT | 58.412 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
761 | 767 | 2.295885 | CTGCTCATCCATCACCTTTCC | 58.704 | 52.381 | 0.00 | 0.00 | 0.00 | 3.13 |
763 | 769 | 1.064463 | GCTCATCCATCACCTTTCCCA | 60.064 | 52.381 | 0.00 | 0.00 | 0.00 | 4.37 |
765 | 771 | 3.484407 | CTCATCCATCACCTTTCCCATC | 58.516 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
768 | 774 | 1.486310 | TCCATCACCTTTCCCATCTCG | 59.514 | 52.381 | 0.00 | 0.00 | 0.00 | 4.04 |
769 | 775 | 1.210478 | CCATCACCTTTCCCATCTCGT | 59.790 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
770 | 776 | 2.555199 | CATCACCTTTCCCATCTCGTC | 58.445 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
773 | 779 | 1.550524 | CACCTTTCCCATCTCGTCTCA | 59.449 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
776 | 782 | 0.108804 | TTTCCCATCTCGTCTCACGC | 60.109 | 55.000 | 0.00 | 0.00 | 42.21 | 5.34 |
777 | 783 | 1.248101 | TTCCCATCTCGTCTCACGCA | 61.248 | 55.000 | 0.00 | 0.00 | 42.21 | 5.24 |
778 | 784 | 1.215382 | CCCATCTCGTCTCACGCAA | 59.785 | 57.895 | 0.00 | 0.00 | 42.21 | 4.85 |
779 | 785 | 0.803768 | CCCATCTCGTCTCACGCAAG | 60.804 | 60.000 | 0.00 | 0.00 | 42.21 | 4.01 |
780 | 786 | 1.416813 | CCATCTCGTCTCACGCAAGC | 61.417 | 60.000 | 0.00 | 0.00 | 42.21 | 4.01 |
783 | 789 | 2.049156 | TCGTCTCACGCAAGCCAG | 60.049 | 61.111 | 0.00 | 0.00 | 42.21 | 4.85 |
784 | 790 | 3.114616 | CGTCTCACGCAAGCCAGG | 61.115 | 66.667 | 0.00 | 0.00 | 45.62 | 4.45 |
785 | 791 | 3.426568 | GTCTCACGCAAGCCAGGC | 61.427 | 66.667 | 1.84 | 1.84 | 45.62 | 4.85 |
786 | 792 | 3.939939 | TCTCACGCAAGCCAGGCA | 61.940 | 61.111 | 15.80 | 0.00 | 45.62 | 4.75 |
822 | 843 | 1.469940 | CCTTTCCCATCTCGTCTCACG | 60.470 | 57.143 | 0.00 | 0.00 | 44.19 | 4.35 |
849 | 872 | 3.775654 | CACCACCTCTCGGGCTCC | 61.776 | 72.222 | 0.00 | 0.00 | 39.10 | 4.70 |
850 | 873 | 3.999285 | ACCACCTCTCGGGCTCCT | 61.999 | 66.667 | 0.00 | 0.00 | 39.10 | 3.69 |
851 | 874 | 3.465403 | CCACCTCTCGGGCTCCTG | 61.465 | 72.222 | 0.00 | 0.00 | 39.10 | 3.86 |
852 | 875 | 4.154347 | CACCTCTCGGGCTCCTGC | 62.154 | 72.222 | 0.00 | 0.00 | 39.10 | 4.85 |
853 | 876 | 4.390556 | ACCTCTCGGGCTCCTGCT | 62.391 | 66.667 | 0.00 | 0.00 | 39.10 | 4.24 |
925 | 969 | 4.408821 | TGCCACAGATCCGTGCCC | 62.409 | 66.667 | 3.36 | 0.00 | 35.47 | 5.36 |
968 | 1022 | 0.758685 | CCATCGGCTTCTCCTCCTCT | 60.759 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1011 | 1086 | 2.892425 | CAGGGGATGAAGCGCGTC | 60.892 | 66.667 | 16.84 | 16.84 | 0.00 | 5.19 |
1414 | 4355 | 4.275689 | TGGTGATTACTTCTTTGTGTGCAG | 59.724 | 41.667 | 0.00 | 0.00 | 0.00 | 4.41 |
1568 | 4788 | 9.548208 | CATCGTACATACACAAGTATCTATCTG | 57.452 | 37.037 | 0.00 | 0.00 | 38.88 | 2.90 |
1663 | 4901 | 5.297776 | CGGAATACCTTCAATGCTCTCAAAT | 59.702 | 40.000 | 0.00 | 0.00 | 32.70 | 2.32 |
1665 | 4903 | 7.012327 | CGGAATACCTTCAATGCTCTCAAATTA | 59.988 | 37.037 | 0.00 | 0.00 | 32.70 | 1.40 |
1669 | 4907 | 7.530426 | ACCTTCAATGCTCTCAAATTAAGTT | 57.470 | 32.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1744 | 5063 | 6.097356 | CCTCACAGGAACAAATGAAATGATG | 58.903 | 40.000 | 0.00 | 0.00 | 37.67 | 3.07 |
1765 | 5084 | 3.258872 | TGCTTCATTGGGTGATTTCCTTG | 59.741 | 43.478 | 0.00 | 0.00 | 36.54 | 3.61 |
1781 | 5100 | 7.773224 | TGATTTCCTTGTTCAAGTTCTAAGACA | 59.227 | 33.333 | 10.93 | 0.00 | 0.00 | 3.41 |
1830 | 5174 | 2.675317 | GCAGGAGTACAAGCTCGACATT | 60.675 | 50.000 | 0.00 | 0.00 | 36.41 | 2.71 |
1842 | 5186 | 7.906160 | ACAAGCTCGACATTGTACATATTTAC | 58.094 | 34.615 | 8.38 | 0.00 | 37.85 | 2.01 |
1910 | 5576 | 6.858478 | GCTCTTTTTCATAACAAGAACTGGAC | 59.142 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
1911 | 5577 | 7.468631 | GCTCTTTTTCATAACAAGAACTGGACA | 60.469 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
1912 | 5578 | 8.463930 | TCTTTTTCATAACAAGAACTGGACAT | 57.536 | 30.769 | 0.00 | 0.00 | 0.00 | 3.06 |
1913 | 5579 | 8.912988 | TCTTTTTCATAACAAGAACTGGACATT | 58.087 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
1914 | 5580 | 9.533253 | CTTTTTCATAACAAGAACTGGACATTT | 57.467 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
1929 | 5595 | 9.533831 | AACTGGACATTTATTTCTGTTATCCTT | 57.466 | 29.630 | 0.00 | 0.00 | 0.00 | 3.36 |
1990 | 5662 | 4.459606 | TGTTTAAAATGCTAGTTGCGACG | 58.540 | 39.130 | 0.00 | 0.00 | 46.63 | 5.12 |
2073 | 6441 | 9.824534 | CCAATAACACTGGAAAAATTAAAATGC | 57.175 | 29.630 | 0.00 | 0.00 | 35.85 | 3.56 |
2236 | 6623 | 3.390175 | TGGTTCCAAGGTCTCCAAAAA | 57.610 | 42.857 | 0.00 | 0.00 | 0.00 | 1.94 |
2609 | 7116 | 3.242518 | CGAATGTGTCTCGCTAAGTCAA | 58.757 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
2625 | 7132 | 6.095440 | GCTAAGTCAAGCTCAATCCCATTAAA | 59.905 | 38.462 | 0.00 | 0.00 | 39.50 | 1.52 |
2651 | 7158 | 5.707242 | TGTCCCAAATAATGCGTTAACAA | 57.293 | 34.783 | 6.39 | 0.00 | 0.00 | 2.83 |
2658 | 7165 | 7.062371 | CCCAAATAATGCGTTAACAAAATTCGA | 59.938 | 33.333 | 6.39 | 0.00 | 0.00 | 3.71 |
3089 | 7676 | 7.392766 | TCACACCCCAGATAATCTATTCATT | 57.607 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3130 | 7717 | 7.391620 | TGGGTAAGTCGTTCAATTTATCTCTT | 58.608 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
3131 | 7718 | 7.548075 | TGGGTAAGTCGTTCAATTTATCTCTTC | 59.452 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
3132 | 7719 | 7.764901 | GGGTAAGTCGTTCAATTTATCTCTTCT | 59.235 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
3133 | 7720 | 9.798994 | GGTAAGTCGTTCAATTTATCTCTTCTA | 57.201 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
3137 | 7724 | 9.877178 | AGTCGTTCAATTTATCTCTTCTATTGT | 57.123 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
3139 | 7726 | 9.314321 | TCGTTCAATTTATCTCTTCTATTGTCC | 57.686 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
3140 | 7727 | 9.098355 | CGTTCAATTTATCTCTTCTATTGTCCA | 57.902 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
3145 | 7732 | 8.824159 | ATTTATCTCTTCTATTGTCCATGACG | 57.176 | 34.615 | 0.00 | 0.00 | 34.95 | 4.35 |
3146 | 7733 | 5.860941 | ATCTCTTCTATTGTCCATGACGT | 57.139 | 39.130 | 0.00 | 0.00 | 34.95 | 4.34 |
3147 | 7734 | 6.961360 | ATCTCTTCTATTGTCCATGACGTA | 57.039 | 37.500 | 0.00 | 0.00 | 34.95 | 3.57 |
3148 | 7735 | 6.961360 | TCTCTTCTATTGTCCATGACGTAT | 57.039 | 37.500 | 0.00 | 0.00 | 34.95 | 3.06 |
3149 | 7736 | 7.348080 | TCTCTTCTATTGTCCATGACGTATT | 57.652 | 36.000 | 0.00 | 0.00 | 34.95 | 1.89 |
3150 | 7737 | 8.459911 | TCTCTTCTATTGTCCATGACGTATTA | 57.540 | 34.615 | 0.00 | 0.00 | 34.95 | 0.98 |
3151 | 7738 | 9.078990 | TCTCTTCTATTGTCCATGACGTATTAT | 57.921 | 33.333 | 0.00 | 0.00 | 34.95 | 1.28 |
3152 | 7739 | 9.347934 | CTCTTCTATTGTCCATGACGTATTATC | 57.652 | 37.037 | 0.00 | 0.00 | 34.95 | 1.75 |
3153 | 7740 | 9.078990 | TCTTCTATTGTCCATGACGTATTATCT | 57.921 | 33.333 | 0.00 | 0.00 | 34.95 | 1.98 |
3154 | 7741 | 9.347934 | CTTCTATTGTCCATGACGTATTATCTC | 57.652 | 37.037 | 0.00 | 0.00 | 34.95 | 2.75 |
3155 | 7742 | 8.637196 | TCTATTGTCCATGACGTATTATCTCT | 57.363 | 34.615 | 0.00 | 0.00 | 34.95 | 3.10 |
3184 | 7772 | 3.553511 | GTCCATGAGCTACGTCTGAATTG | 59.446 | 47.826 | 0.00 | 0.00 | 0.00 | 2.32 |
3280 | 7979 | 5.530519 | TGTGCAACTCGTGATTTTCTATC | 57.469 | 39.130 | 0.00 | 0.00 | 38.04 | 2.08 |
3281 | 7980 | 4.994217 | TGTGCAACTCGTGATTTTCTATCA | 59.006 | 37.500 | 0.00 | 0.00 | 38.04 | 2.15 |
3283 | 7982 | 5.120830 | GTGCAACTCGTGATTTTCTATCAGT | 59.879 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3289 | 7989 | 7.827701 | ACTCGTGATTTTCTATCAGTCAAGTA | 58.172 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
3525 | 9812 | 6.441274 | CAAAGTTGTTACATCTCACAAGCAT | 58.559 | 36.000 | 0.00 | 0.00 | 33.55 | 3.79 |
3887 | 12179 | 2.024941 | TCATGCTAGTCAGTCAGGAGGA | 60.025 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3937 | 12271 | 5.882557 | CACTTGCTAGATTTCAGTTATGGGT | 59.117 | 40.000 | 1.04 | 0.00 | 0.00 | 4.51 |
4084 | 12445 | 4.527509 | ATGGAGATAAGTTGCGATCGAT | 57.472 | 40.909 | 21.57 | 0.00 | 0.00 | 3.59 |
4100 | 12461 | 5.615544 | GCGATCGATGATACCTGAAAAATGG | 60.616 | 44.000 | 21.57 | 0.00 | 0.00 | 3.16 |
4117 | 12480 | 8.807118 | TGAAAAATGGCTGGTTATTGTACAATA | 58.193 | 29.630 | 21.73 | 21.73 | 32.50 | 1.90 |
4342 | 13495 | 3.532542 | GTCTATTAAGTCTGCCACCCAC | 58.467 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
4346 | 13499 | 1.541310 | TAAGTCTGCCACCCACCGAG | 61.541 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
4428 | 13587 | 2.796483 | ATAAGCGAACAGTGCGGCCA | 62.796 | 55.000 | 2.24 | 0.00 | 37.44 | 5.36 |
4450 | 13609 | 5.392487 | CCATCACAAATACGCCATACAAACA | 60.392 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4494 | 13653 | 1.279558 | TGCATGATGCCTTGCCATTTT | 59.720 | 42.857 | 15.70 | 0.00 | 44.23 | 1.82 |
4730 | 13964 | 8.164070 | ACCTCACTCTGGTTTAGTTATTTCATT | 58.836 | 33.333 | 0.00 | 0.00 | 33.34 | 2.57 |
4781 | 14015 | 0.606401 | TCTGCAAGTGGTAGCAAGGC | 60.606 | 55.000 | 0.00 | 1.28 | 40.73 | 4.35 |
4803 | 14037 | 4.836825 | CTTTTCCACTGCTCATCTTCCTA | 58.163 | 43.478 | 0.00 | 0.00 | 0.00 | 2.94 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 2.997986 | GTTGCTCATCCAAAAAGCATGG | 59.002 | 45.455 | 0.00 | 0.00 | 44.84 | 3.66 |
20 | 21 | 2.664568 | CGTTGCTCATCCAAAAAGCATG | 59.335 | 45.455 | 0.00 | 0.00 | 44.84 | 4.06 |
21 | 22 | 2.557924 | TCGTTGCTCATCCAAAAAGCAT | 59.442 | 40.909 | 0.00 | 0.00 | 44.84 | 3.79 |
22 | 23 | 1.952990 | TCGTTGCTCATCCAAAAAGCA | 59.047 | 42.857 | 0.00 | 0.00 | 43.89 | 3.91 |
23 | 24 | 2.704725 | TCGTTGCTCATCCAAAAAGC | 57.295 | 45.000 | 0.00 | 0.00 | 36.56 | 3.51 |
24 | 25 | 2.973224 | CGTTCGTTGCTCATCCAAAAAG | 59.027 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
25 | 26 | 2.856720 | GCGTTCGTTGCTCATCCAAAAA | 60.857 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
26 | 27 | 1.334599 | GCGTTCGTTGCTCATCCAAAA | 60.335 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
27 | 28 | 0.237235 | GCGTTCGTTGCTCATCCAAA | 59.763 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
28 | 29 | 0.602638 | AGCGTTCGTTGCTCATCCAA | 60.603 | 50.000 | 0.00 | 0.00 | 38.62 | 3.53 |
29 | 30 | 0.245266 | TAGCGTTCGTTGCTCATCCA | 59.755 | 50.000 | 2.31 | 0.00 | 42.85 | 3.41 |
30 | 31 | 1.571919 | ATAGCGTTCGTTGCTCATCC | 58.428 | 50.000 | 2.31 | 0.00 | 42.85 | 3.51 |
31 | 32 | 2.471743 | GGTATAGCGTTCGTTGCTCATC | 59.528 | 50.000 | 2.31 | 0.00 | 42.85 | 2.92 |
32 | 33 | 2.159156 | TGGTATAGCGTTCGTTGCTCAT | 60.159 | 45.455 | 2.31 | 0.10 | 42.85 | 2.90 |
33 | 34 | 1.202817 | TGGTATAGCGTTCGTTGCTCA | 59.797 | 47.619 | 2.31 | 0.00 | 42.85 | 4.26 |
34 | 35 | 1.852895 | CTGGTATAGCGTTCGTTGCTC | 59.147 | 52.381 | 2.31 | 0.00 | 42.85 | 4.26 |
35 | 36 | 1.203994 | ACTGGTATAGCGTTCGTTGCT | 59.796 | 47.619 | 0.00 | 4.43 | 46.29 | 3.91 |
36 | 37 | 1.587034 | GACTGGTATAGCGTTCGTTGC | 59.413 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
37 | 38 | 2.190981 | GGACTGGTATAGCGTTCGTTG | 58.809 | 52.381 | 0.00 | 0.00 | 0.00 | 4.10 |
38 | 39 | 1.820519 | TGGACTGGTATAGCGTTCGTT | 59.179 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
39 | 40 | 1.466856 | TGGACTGGTATAGCGTTCGT | 58.533 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
40 | 41 | 2.394708 | CATGGACTGGTATAGCGTTCG | 58.605 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
41 | 42 | 2.135933 | GCATGGACTGGTATAGCGTTC | 58.864 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
42 | 43 | 1.538204 | CGCATGGACTGGTATAGCGTT | 60.538 | 52.381 | 0.00 | 0.00 | 38.98 | 4.84 |
43 | 44 | 0.032130 | CGCATGGACTGGTATAGCGT | 59.968 | 55.000 | 0.00 | 0.00 | 38.98 | 5.07 |
44 | 45 | 1.284982 | GCGCATGGACTGGTATAGCG | 61.285 | 60.000 | 0.30 | 0.00 | 45.68 | 4.26 |
45 | 46 | 0.249868 | TGCGCATGGACTGGTATAGC | 60.250 | 55.000 | 5.66 | 0.00 | 0.00 | 2.97 |
46 | 47 | 1.788258 | CTGCGCATGGACTGGTATAG | 58.212 | 55.000 | 12.24 | 0.00 | 0.00 | 1.31 |
47 | 48 | 0.249868 | GCTGCGCATGGACTGGTATA | 60.250 | 55.000 | 12.24 | 0.00 | 0.00 | 1.47 |
48 | 49 | 1.524621 | GCTGCGCATGGACTGGTAT | 60.525 | 57.895 | 12.24 | 0.00 | 0.00 | 2.73 |
49 | 50 | 2.125147 | GCTGCGCATGGACTGGTA | 60.125 | 61.111 | 12.24 | 0.00 | 0.00 | 3.25 |
50 | 51 | 4.334118 | TGCTGCGCATGGACTGGT | 62.334 | 61.111 | 12.24 | 0.00 | 31.71 | 4.00 |
51 | 52 | 3.807538 | GTGCTGCGCATGGACTGG | 61.808 | 66.667 | 12.24 | 0.00 | 41.91 | 4.00 |
52 | 53 | 3.051479 | TGTGCTGCGCATGGACTG | 61.051 | 61.111 | 23.70 | 9.73 | 41.91 | 3.51 |
53 | 54 | 3.052082 | GTGTGCTGCGCATGGACT | 61.052 | 61.111 | 19.76 | 0.00 | 41.91 | 3.85 |
54 | 55 | 3.356267 | TGTGTGCTGCGCATGGAC | 61.356 | 61.111 | 19.76 | 16.93 | 41.91 | 4.02 |
55 | 56 | 3.356267 | GTGTGTGCTGCGCATGGA | 61.356 | 61.111 | 19.76 | 3.35 | 41.91 | 3.41 |
56 | 57 | 4.746951 | CGTGTGTGCTGCGCATGG | 62.747 | 66.667 | 19.76 | 0.00 | 41.91 | 3.66 |
57 | 58 | 3.640436 | CTCGTGTGTGCTGCGCATG | 62.640 | 63.158 | 19.76 | 12.22 | 41.91 | 4.06 |
58 | 59 | 3.417224 | CTCGTGTGTGCTGCGCAT | 61.417 | 61.111 | 19.76 | 0.00 | 41.91 | 4.73 |
59 | 60 | 3.864160 | ATCTCGTGTGTGCTGCGCA | 62.864 | 57.895 | 12.53 | 12.53 | 35.60 | 6.09 |
60 | 61 | 3.076296 | GATCTCGTGTGTGCTGCGC | 62.076 | 63.158 | 6.19 | 6.19 | 0.00 | 6.09 |
61 | 62 | 1.445066 | AGATCTCGTGTGTGCTGCG | 60.445 | 57.895 | 0.00 | 0.00 | 0.00 | 5.18 |
62 | 63 | 0.668706 | ACAGATCTCGTGTGTGCTGC | 60.669 | 55.000 | 0.00 | 0.00 | 32.28 | 5.25 |
63 | 64 | 1.344458 | GACAGATCTCGTGTGTGCTG | 58.656 | 55.000 | 0.00 | 0.00 | 33.92 | 4.41 |
64 | 65 | 0.109551 | CGACAGATCTCGTGTGTGCT | 60.110 | 55.000 | 0.00 | 0.00 | 33.92 | 4.40 |
65 | 66 | 1.678269 | GCGACAGATCTCGTGTGTGC | 61.678 | 60.000 | 6.28 | 0.33 | 33.92 | 4.57 |
66 | 67 | 1.398762 | CGCGACAGATCTCGTGTGTG | 61.399 | 60.000 | 0.00 | 2.97 | 38.96 | 3.82 |
67 | 68 | 1.154207 | CGCGACAGATCTCGTGTGT | 60.154 | 57.895 | 0.00 | 0.00 | 38.96 | 3.72 |
68 | 69 | 1.869574 | CCGCGACAGATCTCGTGTG | 60.870 | 63.158 | 8.23 | 4.68 | 41.59 | 3.82 |
69 | 70 | 2.485582 | CCGCGACAGATCTCGTGT | 59.514 | 61.111 | 8.23 | 1.91 | 41.59 | 4.49 |
70 | 71 | 2.278206 | CCCGCGACAGATCTCGTG | 60.278 | 66.667 | 8.23 | 10.12 | 42.57 | 4.35 |
71 | 72 | 4.194720 | GCCCGCGACAGATCTCGT | 62.195 | 66.667 | 8.23 | 2.39 | 35.99 | 4.18 |
73 | 74 | 3.889044 | TCGCCCGCGACAGATCTC | 61.889 | 66.667 | 8.23 | 0.00 | 44.01 | 2.75 |
103 | 104 | 4.767255 | CCTCTCCACCCGCAGCAC | 62.767 | 72.222 | 0.00 | 0.00 | 0.00 | 4.40 |
106 | 107 | 3.775654 | GTCCCTCTCCACCCGCAG | 61.776 | 72.222 | 0.00 | 0.00 | 0.00 | 5.18 |
111 | 112 | 3.003763 | AAGGCGTCCCTCTCCACC | 61.004 | 66.667 | 0.00 | 0.00 | 41.90 | 4.61 |
112 | 113 | 2.113243 | AACAAGGCGTCCCTCTCCAC | 62.113 | 60.000 | 0.00 | 0.00 | 41.90 | 4.02 |
113 | 114 | 1.827399 | GAACAAGGCGTCCCTCTCCA | 61.827 | 60.000 | 0.00 | 0.00 | 41.90 | 3.86 |
114 | 115 | 1.079057 | GAACAAGGCGTCCCTCTCC | 60.079 | 63.158 | 0.00 | 0.00 | 41.90 | 3.71 |
115 | 116 | 1.446272 | CGAACAAGGCGTCCCTCTC | 60.446 | 63.158 | 0.00 | 0.00 | 41.90 | 3.20 |
116 | 117 | 2.657237 | CGAACAAGGCGTCCCTCT | 59.343 | 61.111 | 0.00 | 0.00 | 41.90 | 3.69 |
117 | 118 | 3.119096 | GCGAACAAGGCGTCCCTC | 61.119 | 66.667 | 0.00 | 0.00 | 41.90 | 4.30 |
124 | 125 | 1.019278 | TCAATCTCCGCGAACAAGGC | 61.019 | 55.000 | 8.23 | 0.00 | 0.00 | 4.35 |
125 | 126 | 0.721718 | GTCAATCTCCGCGAACAAGG | 59.278 | 55.000 | 8.23 | 0.00 | 0.00 | 3.61 |
126 | 127 | 0.366871 | CGTCAATCTCCGCGAACAAG | 59.633 | 55.000 | 8.23 | 0.00 | 0.00 | 3.16 |
127 | 128 | 1.623081 | GCGTCAATCTCCGCGAACAA | 61.623 | 55.000 | 8.23 | 0.00 | 40.56 | 2.83 |
128 | 129 | 2.092291 | GCGTCAATCTCCGCGAACA | 61.092 | 57.895 | 8.23 | 0.00 | 40.56 | 3.18 |
129 | 130 | 2.695646 | GCGTCAATCTCCGCGAAC | 59.304 | 61.111 | 8.23 | 0.00 | 40.56 | 3.95 |
133 | 134 | 2.956964 | CTCCGCGTCAATCTCCGC | 60.957 | 66.667 | 4.92 | 0.00 | 46.10 | 5.54 |
134 | 135 | 2.278857 | CCTCCGCGTCAATCTCCG | 60.279 | 66.667 | 4.92 | 0.00 | 0.00 | 4.63 |
135 | 136 | 1.519455 | CACCTCCGCGTCAATCTCC | 60.519 | 63.158 | 4.92 | 0.00 | 0.00 | 3.71 |
136 | 137 | 0.802607 | GTCACCTCCGCGTCAATCTC | 60.803 | 60.000 | 4.92 | 0.00 | 0.00 | 2.75 |
137 | 138 | 1.215647 | GTCACCTCCGCGTCAATCT | 59.784 | 57.895 | 4.92 | 0.00 | 0.00 | 2.40 |
138 | 139 | 1.810030 | GGTCACCTCCGCGTCAATC | 60.810 | 63.158 | 4.92 | 0.00 | 0.00 | 2.67 |
139 | 140 | 2.264794 | GGTCACCTCCGCGTCAAT | 59.735 | 61.111 | 4.92 | 0.00 | 0.00 | 2.57 |
140 | 141 | 4.351938 | CGGTCACCTCCGCGTCAA | 62.352 | 66.667 | 4.92 | 0.00 | 43.96 | 3.18 |
147 | 148 | 1.682323 | GTATCCTCTTCGGTCACCTCC | 59.318 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
148 | 149 | 2.099427 | GTGTATCCTCTTCGGTCACCTC | 59.901 | 54.545 | 0.00 | 0.00 | 0.00 | 3.85 |
149 | 150 | 2.100989 | GTGTATCCTCTTCGGTCACCT | 58.899 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
150 | 151 | 1.822990 | TGTGTATCCTCTTCGGTCACC | 59.177 | 52.381 | 0.00 | 0.00 | 33.06 | 4.02 |
151 | 152 | 2.159226 | CCTGTGTATCCTCTTCGGTCAC | 60.159 | 54.545 | 0.00 | 0.00 | 33.87 | 3.67 |
152 | 153 | 2.100197 | CCTGTGTATCCTCTTCGGTCA | 58.900 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
153 | 154 | 1.202428 | GCCTGTGTATCCTCTTCGGTC | 60.202 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
154 | 155 | 0.824759 | GCCTGTGTATCCTCTTCGGT | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
155 | 156 | 0.249073 | CGCCTGTGTATCCTCTTCGG | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
156 | 157 | 0.738975 | TCGCCTGTGTATCCTCTTCG | 59.261 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
157 | 158 | 1.202428 | GGTCGCCTGTGTATCCTCTTC | 60.202 | 57.143 | 0.00 | 0.00 | 0.00 | 2.87 |
158 | 159 | 0.824759 | GGTCGCCTGTGTATCCTCTT | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
159 | 160 | 1.384989 | CGGTCGCCTGTGTATCCTCT | 61.385 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
160 | 161 | 1.065928 | CGGTCGCCTGTGTATCCTC | 59.934 | 63.158 | 0.00 | 0.00 | 0.00 | 3.71 |
161 | 162 | 1.379443 | TCGGTCGCCTGTGTATCCT | 60.379 | 57.895 | 0.00 | 0.00 | 0.00 | 3.24 |
162 | 163 | 1.226888 | GTCGGTCGCCTGTGTATCC | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 2.59 |
163 | 164 | 1.226888 | GGTCGGTCGCCTGTGTATC | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 2.24 |
164 | 165 | 0.394762 | TAGGTCGGTCGCCTGTGTAT | 60.395 | 55.000 | 13.64 | 0.00 | 37.54 | 2.29 |
165 | 166 | 0.394762 | ATAGGTCGGTCGCCTGTGTA | 60.395 | 55.000 | 13.64 | 0.00 | 37.54 | 2.90 |
166 | 167 | 1.664321 | GATAGGTCGGTCGCCTGTGT | 61.664 | 60.000 | 13.64 | 3.66 | 37.54 | 3.72 |
167 | 168 | 1.065928 | GATAGGTCGGTCGCCTGTG | 59.934 | 63.158 | 13.64 | 0.00 | 37.54 | 3.66 |
168 | 169 | 0.755698 | ATGATAGGTCGGTCGCCTGT | 60.756 | 55.000 | 13.64 | 8.86 | 37.54 | 4.00 |
169 | 170 | 0.319040 | CATGATAGGTCGGTCGCCTG | 60.319 | 60.000 | 13.64 | 0.00 | 37.54 | 4.85 |
170 | 171 | 1.464376 | CCATGATAGGTCGGTCGCCT | 61.464 | 60.000 | 0.00 | 10.19 | 40.00 | 5.52 |
171 | 172 | 1.006102 | CCATGATAGGTCGGTCGCC | 60.006 | 63.158 | 0.00 | 0.00 | 0.00 | 5.54 |
172 | 173 | 0.318784 | GTCCATGATAGGTCGGTCGC | 60.319 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
173 | 174 | 0.040336 | CGTCCATGATAGGTCGGTCG | 60.040 | 60.000 | 0.00 | 0.00 | 36.72 | 4.79 |
174 | 175 | 3.867723 | CGTCCATGATAGGTCGGTC | 57.132 | 57.895 | 0.00 | 0.00 | 36.72 | 4.79 |
177 | 178 | 0.597637 | GCACCGTCCATGATAGGTCG | 60.598 | 60.000 | 0.00 | 0.00 | 39.41 | 4.79 |
178 | 179 | 0.249911 | GGCACCGTCCATGATAGGTC | 60.250 | 60.000 | 0.00 | 0.00 | 34.25 | 3.85 |
179 | 180 | 0.980754 | TGGCACCGTCCATGATAGGT | 60.981 | 55.000 | 0.00 | 0.00 | 37.49 | 3.08 |
180 | 181 | 0.180171 | TTGGCACCGTCCATGATAGG | 59.820 | 55.000 | 0.00 | 0.00 | 35.77 | 2.57 |
181 | 182 | 1.134401 | AGTTGGCACCGTCCATGATAG | 60.134 | 52.381 | 0.00 | 0.00 | 35.77 | 2.08 |
182 | 183 | 0.908910 | AGTTGGCACCGTCCATGATA | 59.091 | 50.000 | 0.00 | 0.00 | 35.77 | 2.15 |
183 | 184 | 0.392998 | GAGTTGGCACCGTCCATGAT | 60.393 | 55.000 | 0.00 | 0.00 | 35.77 | 2.45 |
184 | 185 | 1.003839 | GAGTTGGCACCGTCCATGA | 60.004 | 57.895 | 0.00 | 0.00 | 35.77 | 3.07 |
185 | 186 | 1.003355 | AGAGTTGGCACCGTCCATG | 60.003 | 57.895 | 0.00 | 0.00 | 35.77 | 3.66 |
186 | 187 | 1.003355 | CAGAGTTGGCACCGTCCAT | 60.003 | 57.895 | 0.00 | 0.00 | 35.77 | 3.41 |
187 | 188 | 2.425592 | CAGAGTTGGCACCGTCCA | 59.574 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
188 | 189 | 1.961277 | CACAGAGTTGGCACCGTCC | 60.961 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
189 | 190 | 0.814010 | AACACAGAGTTGGCACCGTC | 60.814 | 55.000 | 0.00 | 0.00 | 39.49 | 4.79 |
190 | 191 | 1.223487 | AACACAGAGTTGGCACCGT | 59.777 | 52.632 | 0.00 | 0.00 | 39.49 | 4.83 |
191 | 192 | 4.141144 | AACACAGAGTTGGCACCG | 57.859 | 55.556 | 0.00 | 0.00 | 39.49 | 4.94 |
218 | 219 | 4.364409 | GACGCGAACAACGGTGGC | 62.364 | 66.667 | 15.93 | 0.00 | 42.83 | 5.01 |
219 | 220 | 3.708734 | GGACGCGAACAACGGTGG | 61.709 | 66.667 | 15.93 | 0.00 | 42.83 | 4.61 |
220 | 221 | 3.708734 | GGGACGCGAACAACGGTG | 61.709 | 66.667 | 15.93 | 0.00 | 42.83 | 4.94 |
221 | 222 | 4.224274 | TGGGACGCGAACAACGGT | 62.224 | 61.111 | 15.93 | 0.00 | 42.83 | 4.83 |
222 | 223 | 3.708734 | GTGGGACGCGAACAACGG | 61.709 | 66.667 | 15.93 | 0.00 | 42.83 | 4.44 |
223 | 224 | 3.708734 | GGTGGGACGCGAACAACG | 61.709 | 66.667 | 15.93 | 0.00 | 41.51 | 4.10 |
224 | 225 | 3.708734 | CGGTGGGACGCGAACAAC | 61.709 | 66.667 | 15.93 | 10.41 | 41.51 | 3.32 |
225 | 226 | 3.914117 | TCGGTGGGACGCGAACAA | 61.914 | 61.111 | 15.93 | 0.00 | 41.51 | 2.83 |
226 | 227 | 4.651008 | GTCGGTGGGACGCGAACA | 62.651 | 66.667 | 15.93 | 5.44 | 41.51 | 3.18 |
233 | 234 | 3.154584 | TTGGTCGTGTCGGTGGGAC | 62.155 | 63.158 | 0.00 | 0.00 | 46.27 | 4.46 |
234 | 235 | 2.838693 | TTGGTCGTGTCGGTGGGA | 60.839 | 61.111 | 0.00 | 0.00 | 0.00 | 4.37 |
235 | 236 | 2.167398 | ATCTTGGTCGTGTCGGTGGG | 62.167 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
236 | 237 | 1.014044 | CATCTTGGTCGTGTCGGTGG | 61.014 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
237 | 238 | 1.626654 | GCATCTTGGTCGTGTCGGTG | 61.627 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
238 | 239 | 1.374252 | GCATCTTGGTCGTGTCGGT | 60.374 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
239 | 240 | 1.079819 | AGCATCTTGGTCGTGTCGG | 60.080 | 57.895 | 0.00 | 0.00 | 0.00 | 4.79 |
240 | 241 | 1.354337 | CCAGCATCTTGGTCGTGTCG | 61.354 | 60.000 | 0.00 | 0.00 | 33.38 | 4.35 |
241 | 242 | 0.037326 | TCCAGCATCTTGGTCGTGTC | 60.037 | 55.000 | 0.00 | 0.00 | 39.35 | 3.67 |
242 | 243 | 0.320771 | GTCCAGCATCTTGGTCGTGT | 60.321 | 55.000 | 0.00 | 0.00 | 39.35 | 4.49 |
243 | 244 | 1.021390 | GGTCCAGCATCTTGGTCGTG | 61.021 | 60.000 | 0.00 | 0.00 | 39.35 | 4.35 |
244 | 245 | 1.296715 | GGTCCAGCATCTTGGTCGT | 59.703 | 57.895 | 0.00 | 0.00 | 39.35 | 4.34 |
245 | 246 | 0.107508 | ATGGTCCAGCATCTTGGTCG | 60.108 | 55.000 | 0.00 | 0.00 | 39.35 | 4.79 |
246 | 247 | 1.673168 | GATGGTCCAGCATCTTGGTC | 58.327 | 55.000 | 10.84 | 0.00 | 39.35 | 4.02 |
247 | 248 | 0.257039 | GGATGGTCCAGCATCTTGGT | 59.743 | 55.000 | 16.29 | 0.00 | 39.35 | 3.67 |
248 | 249 | 0.256752 | TGGATGGTCCAGCATCTTGG | 59.743 | 55.000 | 16.29 | 0.00 | 42.67 | 3.61 |
249 | 250 | 3.888424 | TGGATGGTCCAGCATCTTG | 57.112 | 52.632 | 16.29 | 0.00 | 42.67 | 3.02 |
257 | 258 | 0.541998 | AGTCTCACGTGGATGGTCCA | 60.542 | 55.000 | 17.00 | 0.00 | 45.98 | 4.02 |
258 | 259 | 0.173708 | GAGTCTCACGTGGATGGTCC | 59.826 | 60.000 | 17.00 | 0.13 | 36.96 | 4.46 |
259 | 260 | 0.888619 | TGAGTCTCACGTGGATGGTC | 59.111 | 55.000 | 17.00 | 7.25 | 0.00 | 4.02 |
260 | 261 | 0.891373 | CTGAGTCTCACGTGGATGGT | 59.109 | 55.000 | 17.00 | 0.00 | 0.00 | 3.55 |
261 | 262 | 0.174389 | CCTGAGTCTCACGTGGATGG | 59.826 | 60.000 | 17.00 | 9.10 | 0.00 | 3.51 |
262 | 263 | 0.459237 | GCCTGAGTCTCACGTGGATG | 60.459 | 60.000 | 17.00 | 6.75 | 0.00 | 3.51 |
263 | 264 | 1.893786 | GCCTGAGTCTCACGTGGAT | 59.106 | 57.895 | 17.00 | 0.00 | 0.00 | 3.41 |
264 | 265 | 2.626780 | CGCCTGAGTCTCACGTGGA | 61.627 | 63.158 | 17.00 | 9.19 | 0.00 | 4.02 |
265 | 266 | 2.126307 | CGCCTGAGTCTCACGTGG | 60.126 | 66.667 | 17.00 | 6.71 | 0.00 | 4.94 |
266 | 267 | 1.154131 | CTCGCCTGAGTCTCACGTG | 60.154 | 63.158 | 9.94 | 9.94 | 37.46 | 4.49 |
267 | 268 | 2.336478 | CCTCGCCTGAGTCTCACGT | 61.336 | 63.158 | 11.36 | 0.00 | 40.85 | 4.49 |
268 | 269 | 1.587043 | TTCCTCGCCTGAGTCTCACG | 61.587 | 60.000 | 0.00 | 2.38 | 40.85 | 4.35 |
269 | 270 | 0.172352 | CTTCCTCGCCTGAGTCTCAC | 59.828 | 60.000 | 0.00 | 0.00 | 40.85 | 3.51 |
270 | 271 | 0.038310 | TCTTCCTCGCCTGAGTCTCA | 59.962 | 55.000 | 1.78 | 1.78 | 40.85 | 3.27 |
271 | 272 | 0.738389 | CTCTTCCTCGCCTGAGTCTC | 59.262 | 60.000 | 0.00 | 0.00 | 40.85 | 3.36 |
272 | 273 | 0.039035 | ACTCTTCCTCGCCTGAGTCT | 59.961 | 55.000 | 0.00 | 0.00 | 40.85 | 3.24 |
273 | 274 | 1.752683 | TACTCTTCCTCGCCTGAGTC | 58.247 | 55.000 | 0.00 | 0.00 | 40.85 | 3.36 |
274 | 275 | 2.303175 | GATACTCTTCCTCGCCTGAGT | 58.697 | 52.381 | 0.00 | 0.00 | 40.85 | 3.41 |
275 | 276 | 2.034053 | GTGATACTCTTCCTCGCCTGAG | 59.966 | 54.545 | 0.00 | 0.00 | 42.18 | 3.35 |
276 | 277 | 2.025155 | GTGATACTCTTCCTCGCCTGA | 58.975 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
277 | 278 | 1.751351 | TGTGATACTCTTCCTCGCCTG | 59.249 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
278 | 279 | 2.145397 | TGTGATACTCTTCCTCGCCT | 57.855 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
279 | 280 | 2.546795 | CCATGTGATACTCTTCCTCGCC | 60.547 | 54.545 | 0.00 | 0.00 | 0.00 | 5.54 |
280 | 281 | 2.546795 | CCCATGTGATACTCTTCCTCGC | 60.547 | 54.545 | 0.00 | 0.00 | 0.00 | 5.03 |
281 | 282 | 2.959030 | TCCCATGTGATACTCTTCCTCG | 59.041 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
282 | 283 | 3.243569 | CGTCCCATGTGATACTCTTCCTC | 60.244 | 52.174 | 0.00 | 0.00 | 0.00 | 3.71 |
283 | 284 | 2.695666 | CGTCCCATGTGATACTCTTCCT | 59.304 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
284 | 285 | 2.803492 | GCGTCCCATGTGATACTCTTCC | 60.803 | 54.545 | 0.00 | 0.00 | 0.00 | 3.46 |
285 | 286 | 2.474816 | GCGTCCCATGTGATACTCTTC | 58.525 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
286 | 287 | 1.139058 | GGCGTCCCATGTGATACTCTT | 59.861 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
287 | 288 | 0.753262 | GGCGTCCCATGTGATACTCT | 59.247 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
288 | 289 | 0.464036 | TGGCGTCCCATGTGATACTC | 59.536 | 55.000 | 0.00 | 0.00 | 35.79 | 2.59 |
289 | 290 | 0.178068 | GTGGCGTCCCATGTGATACT | 59.822 | 55.000 | 0.00 | 0.00 | 44.51 | 2.12 |
290 | 291 | 0.178068 | AGTGGCGTCCCATGTGATAC | 59.822 | 55.000 | 0.00 | 0.00 | 44.51 | 2.24 |
291 | 292 | 1.783071 | TAGTGGCGTCCCATGTGATA | 58.217 | 50.000 | 0.00 | 0.00 | 44.51 | 2.15 |
292 | 293 | 1.131638 | ATAGTGGCGTCCCATGTGAT | 58.868 | 50.000 | 0.00 | 0.00 | 44.51 | 3.06 |
293 | 294 | 0.177836 | CATAGTGGCGTCCCATGTGA | 59.822 | 55.000 | 0.00 | 0.00 | 44.51 | 3.58 |
294 | 295 | 0.815213 | CCATAGTGGCGTCCCATGTG | 60.815 | 60.000 | 0.00 | 0.00 | 44.51 | 3.21 |
295 | 296 | 1.526887 | CCATAGTGGCGTCCCATGT | 59.473 | 57.895 | 0.00 | 0.00 | 44.51 | 3.21 |
296 | 297 | 4.462394 | CCATAGTGGCGTCCCATG | 57.538 | 61.111 | 0.00 | 0.00 | 44.51 | 3.66 |
305 | 306 | 1.227383 | GGGACCCAAGCCATAGTGG | 59.773 | 63.158 | 5.33 | 0.00 | 41.55 | 4.00 |
306 | 307 | 0.107017 | CTGGGACCCAAGCCATAGTG | 60.107 | 60.000 | 15.87 | 0.00 | 30.80 | 2.74 |
307 | 308 | 1.281925 | CCTGGGACCCAAGCCATAGT | 61.282 | 60.000 | 15.87 | 0.00 | 30.80 | 2.12 |
308 | 309 | 0.988145 | TCCTGGGACCCAAGCCATAG | 60.988 | 60.000 | 15.87 | 0.16 | 30.80 | 2.23 |
309 | 310 | 0.551377 | TTCCTGGGACCCAAGCCATA | 60.551 | 55.000 | 15.87 | 0.00 | 30.80 | 2.74 |
310 | 311 | 1.856873 | TTCCTGGGACCCAAGCCAT | 60.857 | 57.895 | 15.87 | 0.00 | 30.80 | 4.40 |
311 | 312 | 2.451493 | TTCCTGGGACCCAAGCCA | 60.451 | 61.111 | 15.87 | 0.00 | 30.80 | 4.75 |
312 | 313 | 2.356667 | CTTCCTGGGACCCAAGCC | 59.643 | 66.667 | 15.87 | 0.00 | 30.80 | 4.35 |
313 | 314 | 2.356667 | CCTTCCTGGGACCCAAGC | 59.643 | 66.667 | 15.87 | 0.00 | 30.80 | 4.01 |
314 | 315 | 2.356667 | GCCTTCCTGGGACCCAAG | 59.643 | 66.667 | 15.87 | 9.04 | 36.00 | 3.61 |
315 | 316 | 3.264845 | GGCCTTCCTGGGACCCAA | 61.265 | 66.667 | 15.87 | 0.00 | 36.00 | 4.12 |
316 | 317 | 4.608514 | TGGCCTTCCTGGGACCCA | 62.609 | 66.667 | 14.08 | 14.08 | 36.00 | 4.51 |
317 | 318 | 4.048470 | GTGGCCTTCCTGGGACCC | 62.048 | 72.222 | 2.45 | 2.45 | 36.00 | 4.46 |
318 | 319 | 2.936032 | AGTGGCCTTCCTGGGACC | 60.936 | 66.667 | 3.32 | 0.00 | 36.00 | 4.46 |
319 | 320 | 2.671682 | GAGTGGCCTTCCTGGGAC | 59.328 | 66.667 | 3.32 | 0.00 | 36.00 | 4.46 |
320 | 321 | 2.610859 | GGAGTGGCCTTCCTGGGA | 60.611 | 66.667 | 16.84 | 0.00 | 36.00 | 4.37 |
329 | 330 | 1.052617 | GGAGGAGAATAGGAGTGGCC | 58.947 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
330 | 331 | 1.967779 | GAGGAGGAGAATAGGAGTGGC | 59.032 | 57.143 | 0.00 | 0.00 | 0.00 | 5.01 |
331 | 332 | 2.178984 | AGGAGGAGGAGAATAGGAGTGG | 59.821 | 54.545 | 0.00 | 0.00 | 0.00 | 4.00 |
332 | 333 | 3.611025 | AGGAGGAGGAGAATAGGAGTG | 57.389 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
333 | 334 | 3.435890 | CGAAGGAGGAGGAGAATAGGAGT | 60.436 | 52.174 | 0.00 | 0.00 | 0.00 | 3.85 |
334 | 335 | 3.153919 | CGAAGGAGGAGGAGAATAGGAG | 58.846 | 54.545 | 0.00 | 0.00 | 0.00 | 3.69 |
335 | 336 | 2.784095 | TCGAAGGAGGAGGAGAATAGGA | 59.216 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
336 | 337 | 3.231207 | TCGAAGGAGGAGGAGAATAGG | 57.769 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
337 | 338 | 5.303078 | TGAAATCGAAGGAGGAGGAGAATAG | 59.697 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
338 | 339 | 5.069251 | GTGAAATCGAAGGAGGAGGAGAATA | 59.931 | 44.000 | 0.00 | 0.00 | 0.00 | 1.75 |
339 | 340 | 4.033709 | TGAAATCGAAGGAGGAGGAGAAT | 58.966 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
340 | 341 | 3.195825 | GTGAAATCGAAGGAGGAGGAGAA | 59.804 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
341 | 342 | 2.761208 | GTGAAATCGAAGGAGGAGGAGA | 59.239 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
342 | 343 | 2.763448 | AGTGAAATCGAAGGAGGAGGAG | 59.237 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
343 | 344 | 2.821437 | AGTGAAATCGAAGGAGGAGGA | 58.179 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
344 | 345 | 3.526534 | GAAGTGAAATCGAAGGAGGAGG | 58.473 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
345 | 346 | 3.526534 | GGAAGTGAAATCGAAGGAGGAG | 58.473 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
346 | 347 | 2.236395 | GGGAAGTGAAATCGAAGGAGGA | 59.764 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
347 | 348 | 2.633488 | GGGAAGTGAAATCGAAGGAGG | 58.367 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
348 | 349 | 2.271800 | CGGGAAGTGAAATCGAAGGAG | 58.728 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
349 | 350 | 1.066430 | CCGGGAAGTGAAATCGAAGGA | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
350 | 351 | 1.369625 | CCGGGAAGTGAAATCGAAGG | 58.630 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
351 | 352 | 1.369625 | CCCGGGAAGTGAAATCGAAG | 58.630 | 55.000 | 18.48 | 0.00 | 0.00 | 3.79 |
352 | 353 | 0.035820 | CCCCGGGAAGTGAAATCGAA | 60.036 | 55.000 | 26.32 | 0.00 | 0.00 | 3.71 |
353 | 354 | 1.600107 | CCCCGGGAAGTGAAATCGA | 59.400 | 57.895 | 26.32 | 0.00 | 0.00 | 3.59 |
354 | 355 | 2.112815 | GCCCCGGGAAGTGAAATCG | 61.113 | 63.158 | 26.32 | 0.94 | 0.00 | 3.34 |
355 | 356 | 0.748367 | GAGCCCCGGGAAGTGAAATC | 60.748 | 60.000 | 26.32 | 3.73 | 0.00 | 2.17 |
356 | 357 | 1.303282 | GAGCCCCGGGAAGTGAAAT | 59.697 | 57.895 | 26.32 | 0.00 | 0.00 | 2.17 |
357 | 358 | 2.124507 | CTGAGCCCCGGGAAGTGAAA | 62.125 | 60.000 | 26.32 | 0.00 | 0.00 | 2.69 |
358 | 359 | 2.528127 | TGAGCCCCGGGAAGTGAA | 60.528 | 61.111 | 26.32 | 0.00 | 0.00 | 3.18 |
359 | 360 | 3.003173 | CTGAGCCCCGGGAAGTGA | 61.003 | 66.667 | 26.32 | 0.00 | 0.00 | 3.41 |
360 | 361 | 4.101448 | CCTGAGCCCCGGGAAGTG | 62.101 | 72.222 | 26.32 | 5.97 | 44.44 | 3.16 |
367 | 368 | 4.760047 | CAACGGTCCTGAGCCCCG | 62.760 | 72.222 | 6.50 | 6.50 | 46.93 | 5.73 |
368 | 369 | 4.410400 | CCAACGGTCCTGAGCCCC | 62.410 | 72.222 | 0.00 | 0.00 | 0.00 | 5.80 |
369 | 370 | 4.410400 | CCCAACGGTCCTGAGCCC | 62.410 | 72.222 | 0.00 | 0.00 | 0.00 | 5.19 |
371 | 372 | 3.553095 | AAGCCCAACGGTCCTGAGC | 62.553 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
372 | 373 | 1.672356 | CAAGCCCAACGGTCCTGAG | 60.672 | 63.158 | 0.00 | 0.00 | 0.00 | 3.35 |
373 | 374 | 2.429930 | CAAGCCCAACGGTCCTGA | 59.570 | 61.111 | 0.00 | 0.00 | 0.00 | 3.86 |
374 | 375 | 3.365265 | GCAAGCCCAACGGTCCTG | 61.365 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
375 | 376 | 4.660938 | GGCAAGCCCAACGGTCCT | 62.661 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
377 | 378 | 3.765660 | TATACGGCAAGCCCAACGGTC | 62.766 | 57.143 | 5.34 | 0.00 | 0.00 | 4.79 |
378 | 379 | 1.901654 | TATACGGCAAGCCCAACGGT | 61.902 | 55.000 | 5.34 | 0.00 | 0.00 | 4.83 |
379 | 380 | 1.153329 | TATACGGCAAGCCCAACGG | 60.153 | 57.895 | 5.34 | 0.00 | 0.00 | 4.44 |
380 | 381 | 1.758319 | CGTATACGGCAAGCCCAACG | 61.758 | 60.000 | 17.61 | 6.64 | 35.37 | 4.10 |
381 | 382 | 2.011453 | CGTATACGGCAAGCCCAAC | 58.989 | 57.895 | 17.61 | 0.00 | 35.37 | 3.77 |
382 | 383 | 4.524869 | CGTATACGGCAAGCCCAA | 57.475 | 55.556 | 17.61 | 0.00 | 35.37 | 4.12 |
392 | 393 | 6.327934 | CCACTTTATATCTTCCCCGTATACG | 58.672 | 44.000 | 18.40 | 18.40 | 39.44 | 3.06 |
393 | 394 | 6.438425 | TCCCACTTTATATCTTCCCCGTATAC | 59.562 | 42.308 | 0.00 | 0.00 | 0.00 | 1.47 |
394 | 395 | 6.564099 | TCCCACTTTATATCTTCCCCGTATA | 58.436 | 40.000 | 0.00 | 0.00 | 0.00 | 1.47 |
395 | 396 | 5.408824 | TCCCACTTTATATCTTCCCCGTAT | 58.591 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
396 | 397 | 4.818447 | TCCCACTTTATATCTTCCCCGTA | 58.182 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
397 | 398 | 3.660959 | TCCCACTTTATATCTTCCCCGT | 58.339 | 45.455 | 0.00 | 0.00 | 0.00 | 5.28 |
398 | 399 | 4.910458 | ATCCCACTTTATATCTTCCCCG | 57.090 | 45.455 | 0.00 | 0.00 | 0.00 | 5.73 |
399 | 400 | 6.447084 | TCCATATCCCACTTTATATCTTCCCC | 59.553 | 42.308 | 0.00 | 0.00 | 0.00 | 4.81 |
400 | 401 | 7.182930 | AGTCCATATCCCACTTTATATCTTCCC | 59.817 | 40.741 | 0.00 | 0.00 | 0.00 | 3.97 |
401 | 402 | 8.152023 | AGTCCATATCCCACTTTATATCTTCC | 57.848 | 38.462 | 0.00 | 0.00 | 0.00 | 3.46 |
402 | 403 | 8.261522 | GGAGTCCATATCCCACTTTATATCTTC | 58.738 | 40.741 | 3.60 | 0.00 | 0.00 | 2.87 |
403 | 404 | 7.093289 | CGGAGTCCATATCCCACTTTATATCTT | 60.093 | 40.741 | 10.49 | 0.00 | 32.86 | 2.40 |
404 | 405 | 6.381420 | CGGAGTCCATATCCCACTTTATATCT | 59.619 | 42.308 | 10.49 | 0.00 | 32.86 | 1.98 |
405 | 406 | 6.574350 | CGGAGTCCATATCCCACTTTATATC | 58.426 | 44.000 | 10.49 | 0.00 | 32.86 | 1.63 |
406 | 407 | 5.104900 | GCGGAGTCCATATCCCACTTTATAT | 60.105 | 44.000 | 10.49 | 0.00 | 32.86 | 0.86 |
407 | 408 | 4.222145 | GCGGAGTCCATATCCCACTTTATA | 59.778 | 45.833 | 10.49 | 0.00 | 32.86 | 0.98 |
408 | 409 | 3.008049 | GCGGAGTCCATATCCCACTTTAT | 59.992 | 47.826 | 10.49 | 0.00 | 32.86 | 1.40 |
409 | 410 | 2.367567 | GCGGAGTCCATATCCCACTTTA | 59.632 | 50.000 | 10.49 | 0.00 | 32.86 | 1.85 |
410 | 411 | 1.141053 | GCGGAGTCCATATCCCACTTT | 59.859 | 52.381 | 10.49 | 0.00 | 32.86 | 2.66 |
411 | 412 | 0.759346 | GCGGAGTCCATATCCCACTT | 59.241 | 55.000 | 10.49 | 0.00 | 32.86 | 3.16 |
412 | 413 | 1.122019 | GGCGGAGTCCATATCCCACT | 61.122 | 60.000 | 10.49 | 0.00 | 32.86 | 4.00 |
413 | 414 | 1.371558 | GGCGGAGTCCATATCCCAC | 59.628 | 63.158 | 10.49 | 0.00 | 32.86 | 4.61 |
414 | 415 | 1.074850 | TGGCGGAGTCCATATCCCA | 60.075 | 57.895 | 10.49 | 4.32 | 32.86 | 4.37 |
415 | 416 | 1.371558 | GTGGCGGAGTCCATATCCC | 59.628 | 63.158 | 10.49 | 1.64 | 36.26 | 3.85 |
416 | 417 | 1.006102 | CGTGGCGGAGTCCATATCC | 60.006 | 63.158 | 10.49 | 4.97 | 36.26 | 2.59 |
417 | 418 | 0.318784 | GTCGTGGCGGAGTCCATATC | 60.319 | 60.000 | 10.49 | 0.00 | 36.26 | 1.63 |
418 | 419 | 1.740285 | GTCGTGGCGGAGTCCATAT | 59.260 | 57.895 | 10.49 | 0.00 | 36.26 | 1.78 |
419 | 420 | 2.420568 | GGTCGTGGCGGAGTCCATA | 61.421 | 63.158 | 10.49 | 0.00 | 36.26 | 2.74 |
420 | 421 | 3.771160 | GGTCGTGGCGGAGTCCAT | 61.771 | 66.667 | 10.49 | 0.00 | 36.26 | 3.41 |
435 | 436 | 3.011818 | CCTAATTTAAAAGACCGCCGGT | 58.988 | 45.455 | 9.43 | 9.43 | 39.44 | 5.28 |
436 | 437 | 3.011818 | ACCTAATTTAAAAGACCGCCGG | 58.988 | 45.455 | 0.00 | 0.00 | 0.00 | 6.13 |
437 | 438 | 4.690184 | AACCTAATTTAAAAGACCGCCG | 57.310 | 40.909 | 0.00 | 0.00 | 0.00 | 6.46 |
438 | 439 | 8.815141 | TTTTTAACCTAATTTAAAAGACCGCC | 57.185 | 30.769 | 0.00 | 0.00 | 40.37 | 6.13 |
539 | 541 | 5.796424 | AGAGGATGAATTTTGTGCAAACT | 57.204 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
553 | 555 | 9.173021 | TCGAAGCAAATTTAAATAAGAGGATGA | 57.827 | 29.630 | 0.01 | 0.00 | 0.00 | 2.92 |
563 | 565 | 8.320295 | CGCATGTATTTCGAAGCAAATTTAAAT | 58.680 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
566 | 568 | 6.250315 | CACGCATGTATTTCGAAGCAAATTTA | 59.750 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
582 | 584 | 3.625313 | CCATACAACCATTCACGCATGTA | 59.375 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
583 | 585 | 2.423185 | CCATACAACCATTCACGCATGT | 59.577 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
584 | 586 | 2.795681 | GCCATACAACCATTCACGCATG | 60.796 | 50.000 | 0.00 | 0.00 | 0.00 | 4.06 |
585 | 587 | 1.405105 | GCCATACAACCATTCACGCAT | 59.595 | 47.619 | 0.00 | 0.00 | 0.00 | 4.73 |
586 | 588 | 0.808125 | GCCATACAACCATTCACGCA | 59.192 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
587 | 589 | 0.808125 | TGCCATACAACCATTCACGC | 59.192 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
588 | 590 | 1.401552 | CCTGCCATACAACCATTCACG | 59.598 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
589 | 591 | 1.134946 | GCCTGCCATACAACCATTCAC | 59.865 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
590 | 592 | 1.005805 | AGCCTGCCATACAACCATTCA | 59.994 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
591 | 593 | 1.767759 | AGCCTGCCATACAACCATTC | 58.232 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
592 | 594 | 2.102578 | GAAGCCTGCCATACAACCATT | 58.897 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
593 | 595 | 1.686115 | GGAAGCCTGCCATACAACCAT | 60.686 | 52.381 | 0.00 | 0.00 | 0.00 | 3.55 |
594 | 596 | 0.323360 | GGAAGCCTGCCATACAACCA | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
595 | 597 | 0.323360 | TGGAAGCCTGCCATACAACC | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
596 | 598 | 1.767759 | ATGGAAGCCTGCCATACAAC | 58.232 | 50.000 | 0.96 | 0.00 | 44.07 | 3.32 |
602 | 604 | 4.568380 | GGATAATGATATGGAAGCCTGCCA | 60.568 | 45.833 | 0.00 | 0.00 | 40.24 | 4.92 |
603 | 605 | 3.950395 | GGATAATGATATGGAAGCCTGCC | 59.050 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
604 | 606 | 3.624861 | CGGATAATGATATGGAAGCCTGC | 59.375 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
605 | 607 | 3.624861 | GCGGATAATGATATGGAAGCCTG | 59.375 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
606 | 608 | 3.679917 | CGCGGATAATGATATGGAAGCCT | 60.680 | 47.826 | 0.00 | 0.00 | 0.00 | 4.58 |
607 | 609 | 2.609459 | CGCGGATAATGATATGGAAGCC | 59.391 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
608 | 610 | 3.262420 | ACGCGGATAATGATATGGAAGC | 58.738 | 45.455 | 12.47 | 0.00 | 0.00 | 3.86 |
609 | 611 | 3.865745 | GGACGCGGATAATGATATGGAAG | 59.134 | 47.826 | 12.47 | 0.00 | 0.00 | 3.46 |
610 | 612 | 3.259625 | TGGACGCGGATAATGATATGGAA | 59.740 | 43.478 | 12.47 | 0.00 | 0.00 | 3.53 |
611 | 613 | 2.829120 | TGGACGCGGATAATGATATGGA | 59.171 | 45.455 | 12.47 | 0.00 | 0.00 | 3.41 |
612 | 614 | 3.245518 | TGGACGCGGATAATGATATGG | 57.754 | 47.619 | 12.47 | 0.00 | 0.00 | 2.74 |
613 | 615 | 3.993736 | TGTTGGACGCGGATAATGATATG | 59.006 | 43.478 | 12.47 | 0.00 | 0.00 | 1.78 |
614 | 616 | 4.265904 | TGTTGGACGCGGATAATGATAT | 57.734 | 40.909 | 12.47 | 0.00 | 0.00 | 1.63 |
615 | 617 | 3.737032 | TGTTGGACGCGGATAATGATA | 57.263 | 42.857 | 12.47 | 0.00 | 0.00 | 2.15 |
616 | 618 | 2.613026 | TGTTGGACGCGGATAATGAT | 57.387 | 45.000 | 12.47 | 0.00 | 0.00 | 2.45 |
617 | 619 | 2.613026 | ATGTTGGACGCGGATAATGA | 57.387 | 45.000 | 12.47 | 0.00 | 0.00 | 2.57 |
618 | 620 | 3.691049 | AAATGTTGGACGCGGATAATG | 57.309 | 42.857 | 12.47 | 0.00 | 0.00 | 1.90 |
626 | 628 | 1.890489 | ACCCCTAAAAATGTTGGACGC | 59.110 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
627 | 629 | 3.908213 | CAACCCCTAAAAATGTTGGACG | 58.092 | 45.455 | 0.00 | 0.00 | 35.58 | 4.79 |
632 | 634 | 1.621317 | CCGCCAACCCCTAAAAATGTT | 59.379 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
633 | 635 | 1.262417 | CCGCCAACCCCTAAAAATGT | 58.738 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
653 | 655 | 1.815003 | CTTGTCACTTTCAGGGCATCC | 59.185 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
744 | 750 | 3.137913 | AGATGGGAAAGGTGATGGATGAG | 59.862 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
746 | 752 | 3.484407 | GAGATGGGAAAGGTGATGGATG | 58.516 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
747 | 753 | 2.105477 | CGAGATGGGAAAGGTGATGGAT | 59.895 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
748 | 754 | 1.486310 | CGAGATGGGAAAGGTGATGGA | 59.514 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
749 | 755 | 1.210478 | ACGAGATGGGAAAGGTGATGG | 59.790 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
750 | 756 | 2.169352 | AGACGAGATGGGAAAGGTGATG | 59.831 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
751 | 757 | 2.432510 | GAGACGAGATGGGAAAGGTGAT | 59.567 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
755 | 761 | 1.469940 | CGTGAGACGAGATGGGAAAGG | 60.470 | 57.143 | 0.00 | 0.00 | 46.05 | 3.11 |
757 | 763 | 0.108804 | GCGTGAGACGAGATGGGAAA | 60.109 | 55.000 | 0.00 | 0.00 | 46.05 | 3.13 |
758 | 764 | 1.248101 | TGCGTGAGACGAGATGGGAA | 61.248 | 55.000 | 0.00 | 0.00 | 46.05 | 3.97 |
761 | 767 | 1.416813 | GCTTGCGTGAGACGAGATGG | 61.417 | 60.000 | 0.00 | 0.00 | 46.05 | 3.51 |
763 | 769 | 1.153745 | GGCTTGCGTGAGACGAGAT | 60.154 | 57.895 | 0.00 | 0.00 | 46.05 | 2.75 |
765 | 771 | 2.049156 | TGGCTTGCGTGAGACGAG | 60.049 | 61.111 | 0.00 | 0.00 | 46.05 | 4.18 |
768 | 774 | 3.426568 | GCCTGGCTTGCGTGAGAC | 61.427 | 66.667 | 12.43 | 0.00 | 0.00 | 3.36 |
769 | 775 | 3.939939 | TGCCTGGCTTGCGTGAGA | 61.940 | 61.111 | 21.03 | 0.00 | 0.00 | 3.27 |
770 | 776 | 3.730761 | GTGCCTGGCTTGCGTGAG | 61.731 | 66.667 | 21.03 | 0.00 | 0.00 | 3.51 |
783 | 789 | 2.300967 | TGATGGGAGAGGTGGTGCC | 61.301 | 63.158 | 0.00 | 0.00 | 37.58 | 5.01 |
784 | 790 | 1.078143 | GTGATGGGAGAGGTGGTGC | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
785 | 791 | 0.911525 | AGGTGATGGGAGAGGTGGTG | 60.912 | 60.000 | 0.00 | 0.00 | 0.00 | 4.17 |
786 | 792 | 0.178861 | AAGGTGATGGGAGAGGTGGT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
790 | 796 | 0.548510 | GGGAAAGGTGATGGGAGAGG | 59.451 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
791 | 797 | 1.289160 | TGGGAAAGGTGATGGGAGAG | 58.711 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
792 | 798 | 1.846439 | GATGGGAAAGGTGATGGGAGA | 59.154 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
793 | 799 | 1.849039 | AGATGGGAAAGGTGATGGGAG | 59.151 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
794 | 800 | 1.846439 | GAGATGGGAAAGGTGATGGGA | 59.154 | 52.381 | 0.00 | 0.00 | 0.00 | 4.37 |
849 | 872 | 1.070289 | TGATGGCTATGAGCAGAGCAG | 59.930 | 52.381 | 17.58 | 0.00 | 46.70 | 4.24 |
850 | 873 | 1.125633 | TGATGGCTATGAGCAGAGCA | 58.874 | 50.000 | 17.58 | 5.75 | 46.70 | 4.26 |
851 | 874 | 1.510776 | GTGATGGCTATGAGCAGAGC | 58.489 | 55.000 | 8.50 | 8.50 | 44.75 | 4.09 |
852 | 875 | 1.693062 | AGGTGATGGCTATGAGCAGAG | 59.307 | 52.381 | 1.15 | 0.00 | 44.75 | 3.35 |
853 | 876 | 1.798626 | AGGTGATGGCTATGAGCAGA | 58.201 | 50.000 | 1.15 | 0.00 | 44.75 | 4.26 |
927 | 971 | 1.522580 | CCTTCCTGGCTTAGCTCGC | 60.523 | 63.158 | 3.59 | 0.00 | 0.00 | 5.03 |
930 | 974 | 1.199615 | GAGTCCTTCCTGGCTTAGCT | 58.800 | 55.000 | 3.59 | 0.00 | 35.26 | 3.32 |
931 | 975 | 0.179234 | GGAGTCCTTCCTGGCTTAGC | 59.821 | 60.000 | 0.41 | 0.00 | 43.16 | 3.09 |
932 | 976 | 1.573108 | TGGAGTCCTTCCTGGCTTAG | 58.427 | 55.000 | 11.33 | 0.00 | 46.92 | 2.18 |
933 | 977 | 2.119495 | GATGGAGTCCTTCCTGGCTTA | 58.881 | 52.381 | 11.33 | 0.00 | 46.92 | 3.09 |
934 | 978 | 0.915364 | GATGGAGTCCTTCCTGGCTT | 59.085 | 55.000 | 11.33 | 0.00 | 46.92 | 4.35 |
935 | 979 | 1.333636 | CGATGGAGTCCTTCCTGGCT | 61.334 | 60.000 | 17.19 | 0.00 | 46.92 | 4.75 |
1568 | 4788 | 2.664568 | TCGTACGTGCTAAGTCAAATGC | 59.335 | 45.455 | 16.05 | 0.00 | 0.00 | 3.56 |
1665 | 4903 | 9.924650 | CACCAGACAAATACTAGTTACTAACTT | 57.075 | 33.333 | 0.00 | 0.00 | 42.81 | 2.66 |
1669 | 4907 | 7.123247 | GGGTCACCAGACAAATACTAGTTACTA | 59.877 | 40.741 | 0.00 | 0.00 | 46.80 | 1.82 |
1744 | 5063 | 3.259123 | ACAAGGAAATCACCCAATGAAGC | 59.741 | 43.478 | 0.00 | 0.00 | 41.93 | 3.86 |
1765 | 5084 | 7.497925 | AATGGAACTGTCTTAGAACTTGAAC | 57.502 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1781 | 5100 | 4.910195 | TGCATGAACTCTGTAATGGAACT | 58.090 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
1830 | 5174 | 8.463456 | TCGACAAATGAACGTAAATATGTACA | 57.537 | 30.769 | 0.00 | 0.00 | 0.00 | 2.90 |
1842 | 5186 | 5.293324 | TCCCAAGATTATCGACAAATGAACG | 59.707 | 40.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1966 | 5632 | 5.058008 | CGTCGCAACTAGCATTTTAAACAAG | 59.942 | 40.000 | 0.00 | 0.00 | 46.13 | 3.16 |
1990 | 5662 | 5.105756 | CCCAATACCACTGGAAGATTGAAAC | 60.106 | 44.000 | 16.95 | 0.00 | 37.43 | 2.78 |
2085 | 6460 | 5.840715 | ACATGCATGTTGACACATAAAACA | 58.159 | 33.333 | 26.61 | 0.00 | 42.14 | 2.83 |
2609 | 7116 | 4.613437 | ACATGGTTTAATGGGATTGAGCT | 58.387 | 39.130 | 0.00 | 0.00 | 31.46 | 4.09 |
2625 | 7132 | 2.733956 | ACGCATTATTTGGGACATGGT | 58.266 | 42.857 | 0.00 | 0.00 | 40.62 | 3.55 |
2658 | 7165 | 8.926374 | TCCACATTGCTTTTAATATCAATCCAT | 58.074 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
2777 | 7284 | 7.391148 | ACAACTTGATAAAGCGTAATTGGAT | 57.609 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2909 | 7421 | 6.211184 | TCAACAAATCATACTTGAGCCCAAAT | 59.789 | 34.615 | 0.00 | 0.00 | 34.73 | 2.32 |
3089 | 7676 | 7.023171 | ACTTACCCAGTCAACCATAACAATA | 57.977 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3130 | 7717 | 8.637196 | AGAGATAATACGTCATGGACAATAGA | 57.363 | 34.615 | 0.00 | 0.00 | 32.09 | 1.98 |
3131 | 7718 | 9.347934 | GAAGAGATAATACGTCATGGACAATAG | 57.652 | 37.037 | 0.00 | 0.00 | 32.09 | 1.73 |
3132 | 7719 | 9.078990 | AGAAGAGATAATACGTCATGGACAATA | 57.921 | 33.333 | 0.00 | 0.00 | 32.09 | 1.90 |
3133 | 7720 | 7.957002 | AGAAGAGATAATACGTCATGGACAAT | 58.043 | 34.615 | 0.00 | 0.00 | 32.09 | 2.71 |
3134 | 7721 | 7.348080 | AGAAGAGATAATACGTCATGGACAA | 57.652 | 36.000 | 0.00 | 0.00 | 32.09 | 3.18 |
3135 | 7722 | 6.961360 | AGAAGAGATAATACGTCATGGACA | 57.039 | 37.500 | 0.00 | 0.00 | 32.09 | 4.02 |
3136 | 7723 | 9.347934 | CAATAGAAGAGATAATACGTCATGGAC | 57.652 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
3137 | 7724 | 9.078990 | ACAATAGAAGAGATAATACGTCATGGA | 57.921 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
3138 | 7725 | 9.347934 | GACAATAGAAGAGATAATACGTCATGG | 57.652 | 37.037 | 0.00 | 0.00 | 0.00 | 3.66 |
3139 | 7726 | 9.347934 | GGACAATAGAAGAGATAATACGTCATG | 57.652 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
3140 | 7727 | 9.078990 | TGGACAATAGAAGAGATAATACGTCAT | 57.921 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
3141 | 7728 | 8.459911 | TGGACAATAGAAGAGATAATACGTCA | 57.540 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
3142 | 7729 | 9.347934 | CATGGACAATAGAAGAGATAATACGTC | 57.652 | 37.037 | 0.00 | 0.00 | 0.00 | 4.34 |
3143 | 7730 | 9.078990 | TCATGGACAATAGAAGAGATAATACGT | 57.921 | 33.333 | 0.00 | 0.00 | 0.00 | 3.57 |
3144 | 7731 | 9.566530 | CTCATGGACAATAGAAGAGATAATACG | 57.433 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
3145 | 7732 | 9.364989 | GCTCATGGACAATAGAAGAGATAATAC | 57.635 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
3146 | 7733 | 9.319060 | AGCTCATGGACAATAGAAGAGATAATA | 57.681 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
3147 | 7734 | 8.204903 | AGCTCATGGACAATAGAAGAGATAAT | 57.795 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
3148 | 7735 | 7.609097 | AGCTCATGGACAATAGAAGAGATAA | 57.391 | 36.000 | 0.00 | 0.00 | 0.00 | 1.75 |
3149 | 7736 | 7.094592 | CGTAGCTCATGGACAATAGAAGAGATA | 60.095 | 40.741 | 0.00 | 0.00 | 0.00 | 1.98 |
3150 | 7737 | 6.294453 | CGTAGCTCATGGACAATAGAAGAGAT | 60.294 | 42.308 | 0.00 | 0.00 | 0.00 | 2.75 |
3151 | 7738 | 5.009110 | CGTAGCTCATGGACAATAGAAGAGA | 59.991 | 44.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3152 | 7739 | 5.218885 | CGTAGCTCATGGACAATAGAAGAG | 58.781 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
3153 | 7740 | 4.645136 | ACGTAGCTCATGGACAATAGAAGA | 59.355 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
3154 | 7741 | 4.938080 | ACGTAGCTCATGGACAATAGAAG | 58.062 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
3155 | 7742 | 4.645136 | AGACGTAGCTCATGGACAATAGAA | 59.355 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
3184 | 7772 | 1.467734 | CTTCAGTGCATGCCTTCAGTC | 59.532 | 52.381 | 16.68 | 0.00 | 0.00 | 3.51 |
3244 | 7939 | 5.343058 | CGAGTTGCACATAACCTGAATTTTG | 59.657 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
3280 | 7979 | 3.733337 | AGGCAGAACAAGTACTTGACTG | 58.267 | 45.455 | 34.57 | 34.57 | 42.93 | 3.51 |
3281 | 7980 | 3.244249 | GGAGGCAGAACAAGTACTTGACT | 60.244 | 47.826 | 36.14 | 28.80 | 42.93 | 3.41 |
3283 | 7982 | 2.972713 | AGGAGGCAGAACAAGTACTTGA | 59.027 | 45.455 | 36.14 | 0.00 | 42.93 | 3.02 |
3289 | 7989 | 2.334023 | AGAGAAGGAGGCAGAACAAGT | 58.666 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
3349 | 8052 | 2.839486 | TCAGCAAAGTTCGATGGAGT | 57.161 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3677 | 11953 | 6.041865 | ACATCCCACATGAAGAAAATTGTCAA | 59.958 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
3742 | 12018 | 1.216941 | GGACGACCGAAAGCACGAAA | 61.217 | 55.000 | 0.00 | 0.00 | 35.09 | 3.46 |
3747 | 12023 | 2.342279 | CCAGGACGACCGAAAGCA | 59.658 | 61.111 | 0.00 | 0.00 | 41.83 | 3.91 |
3845 | 12121 | 1.006832 | GTGACGGCAAATATGAGCGT | 58.993 | 50.000 | 0.00 | 0.00 | 0.00 | 5.07 |
3937 | 12271 | 4.038271 | TCTAACAAGGGACGAAGGACTA | 57.962 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
4075 | 12436 | 3.726291 | TTTCAGGTATCATCGATCGCA | 57.274 | 42.857 | 11.09 | 0.00 | 0.00 | 5.10 |
4084 | 12445 | 4.046286 | ACCAGCCATTTTTCAGGTATCA | 57.954 | 40.909 | 0.00 | 0.00 | 0.00 | 2.15 |
4100 | 12461 | 8.438676 | ACTCATTCTATTGTACAATAACCAGC | 57.561 | 34.615 | 24.65 | 0.00 | 33.34 | 4.85 |
4117 | 12480 | 6.977502 | CACACGAAGAGATATGAACTCATTCT | 59.022 | 38.462 | 0.00 | 1.62 | 37.76 | 2.40 |
4342 | 13495 | 1.131883 | CCCTACAACACTCGTACTCGG | 59.868 | 57.143 | 0.00 | 0.00 | 37.69 | 4.63 |
4346 | 13499 | 2.738013 | AAGCCCTACAACACTCGTAC | 57.262 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4428 | 13587 | 5.414454 | AGTGTTTGTATGGCGTATTTGTGAT | 59.586 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4450 | 13609 | 3.381590 | GGTTTGGAGTTGCTCAAGAAAGT | 59.618 | 43.478 | 0.00 | 0.00 | 31.08 | 2.66 |
4520 | 13679 | 3.532232 | TCCTGGGGTTGATCTACTAGACT | 59.468 | 47.826 | 7.24 | 0.00 | 0.00 | 3.24 |
4730 | 13964 | 8.865590 | TTTCTATGAATGAAATATCGACACGA | 57.134 | 30.769 | 0.00 | 0.00 | 41.13 | 4.35 |
4747 | 13981 | 5.981915 | CACTTGCAGATCGATCTTTCTATGA | 59.018 | 40.000 | 25.25 | 6.69 | 34.22 | 2.15 |
4781 | 14015 | 3.683802 | AGGAAGATGAGCAGTGGAAAAG | 58.316 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.