AutoCloner

Multiple sequence alignment - TraesCS3A01G467000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G467000	chr3A	100.000	2615	0	0	1	2615	700577594	700574980	0.000000e+00	4830.0
1	TraesCS3A01G467000	chr3A	89.583	864	64	12	912	1757	701864018	701863163	0.000000e+00	1074.0
2	TraesCS3A01G467000	chr3A	93.135	437	22	5	1780	2216	701863052	701862624	3.670000e-178	634.0
3	TraesCS3A01G467000	chr3A	92.892	408	11	1	2208	2615	701862442	701862053	6.280000e-161	577.0
4	TraesCS3A01G467000	chr3A	92.045	88	7	0	2375	2462	700570328	700570241	9.830000e-25	124.0
5	TraesCS3A01G467000	chr3A	90.909	88	8	0	2375	2462	701858753	701858666	4.570000e-23	119.0
6	TraesCS3A01G467000	chr3B	93.995	816	42	3	969	1784	755043412	755042604	0.000000e+00	1229.0
7	TraesCS3A01G467000	chr3B	93.492	630	26	3	994	1620	756181388	756182005	0.000000e+00	922.0
8	TraesCS3A01G467000	chr3B	89.725	691	51	11	1852	2535	755042474	755041797	0.000000e+00	865.0
9	TraesCS3A01G467000	chr3B	86.220	762	72	18	2	755	756135009	756135745	0.000000e+00	795.0
10	TraesCS3A01G467000	chr3B	91.413	559	37	9	1823	2379	756182231	756182780	0.000000e+00	756.0
11	TraesCS3A01G467000	chr3B	87.719	228	9	6	915	1126	756135757	756135981	5.590000e-62	248.0
12	TraesCS3A01G467000	chr3B	90.066	151	7	5	1634	1784	756181990	756182132	3.440000e-44	189.0
13	TraesCS3A01G467000	chr3B	82.990	194	29	2	563	756	756181117	756181306	3.460000e-39	172.0
14	TraesCS3A01G467000	chr3B	96.000	75	2	1	912	986	755043499	755043426	1.270000e-23	121.0
15	TraesCS3A01G467000	chr3B	77.586	232	29	19	2250	2462	754983987	754983760	4.570000e-23	119.0
16	TraesCS3A01G467000	chr3D	93.574	747	39	6	1870	2615	569546777	569546039	0.000000e+00	1105.0
17	TraesCS3A01G467000	chr3D	91.656	755	49	8	1867	2615	567216574	567217320	0.000000e+00	1033.0
18	TraesCS3A01G467000	chr3D	90.084	716	53	9	917	1621	567215586	567216294	0.000000e+00	913.0
19	TraesCS3A01G467000	chr3D	92.683	369	24	3	1	368	569550724	569550358	1.780000e-146	529.0
20	TraesCS3A01G467000	chr3D	91.169	385	17	6	906	1279	569549353	569548975	8.350000e-140	507.0
21	TraesCS3A01G467000	chr3D	91.467	375	22	5	372	745	569550199	569549834	8.350000e-140	507.0
22	TraesCS3A01G467000	chr3D	91.343	335	29	0	1287	1621	569547394	569547060	2.370000e-125	459.0
23	TraesCS3A01G467000	chrUn	91.746	630	37	3	994	1620	41100476	41101093	0.000000e+00	861.0
24	TraesCS3A01G467000	chrUn	94.086	558	29	3	1823	2379	41101323	41101877	0.000000e+00	845.0
25	TraesCS3A01G467000	chrUn	86.561	759	76	16	2	755	324345339	324346076	0.000000e+00	813.0
26	TraesCS3A01G467000	chrUn	90.816	294	12	3	994	1284	389810763	389810482	1.900000e-101	379.0
27	TraesCS3A01G467000	chrUn	89.377	273	19	7	2	273	330200342	330200079	4.170000e-88	335.0
28	TraesCS3A01G467000	chrUn	86.842	228	11	6	915	1126	324346088	324346312	1.210000e-58	237.0
29	TraesCS3A01G467000	chrUn	90.643	171	12	2	2443	2613	41101876	41102042	9.420000e-55	224.0
30	TraesCS3A01G467000	chrUn	88.742	151	9	5	1634	1784	41101078	41101220	7.440000e-41	178.0
31	TraesCS3A01G467000	chrUn	82.474	194	30	2	563	756	41100205	41100394	1.610000e-37	167.0
32	TraesCS3A01G467000	chrUn	82.474	194	30	2	563	756	389811034	389810845	1.610000e-37	167.0
33	TraesCS3A01G467000	chrUn	88.636	88	10	0	2375	2462	41108759	41108846	9.900000e-20	108.0
34	TraesCS3A01G467000	chr5B	88.554	498	27	13	1870	2366	619015047	619014579	6.280000e-161	577.0
35	TraesCS3A01G467000	chr7B	88.353	498	28	13	1870	2366	611462925	611462457	2.920000e-159	571.0
36	TraesCS3A01G467000	chr7B	89.202	426	35	7	1	419	58444134	58444555	2.980000e-144	521.0
37	TraesCS3A01G467000	chr7B	81.119	143	20	5	761	899	87456301	87456162	9.900000e-20	108.0
38	TraesCS3A01G467000	chr2B	88.224	501	29	13	1867	2366	726562203	726562674	2.920000e-159	571.0
39	TraesCS3A01G467000	chr2B	74.747	198	43	6	231	424	696360458	696360652	6.000000e-12	82.4
40	TraesCS3A01G467000	chr4A	77.622	429	63	17	10	419	28565403	28564989	2.020000e-56	230.0
41	TraesCS3A01G467000	chr4A	86.111	144	16	3	758	899	563224792	563224651	4.510000e-33	152.0
42	TraesCS3A01G467000	chr5A	76.903	381	59	17	48	425	454724758	454724404	3.440000e-44	189.0
43	TraesCS3A01G467000	chr5A	75.696	395	58	20	19	412	69534310	69533953	2.080000e-36	163.0
44	TraesCS3A01G467000	chr5A	86.014	143	13	6	760	899	23936644	23936506	2.100000e-31	147.0
45	TraesCS3A01G467000	chr5A	81.633	98	15	3	324	420	125083284	125083379	7.760000e-11	78.7
46	TraesCS3A01G467000	chr2D	86.429	140	18	1	758	897	589521922	589522060	4.510000e-33	152.0
47	TraesCS3A01G467000	chr7A	85.827	127	15	3	757	882	652877339	652877215	5.870000e-27	132.0
48	TraesCS3A01G467000	chr7A	95.890	73	3	0	760	832	32022683	32022755	4.570000e-23	119.0
49	TraesCS3A01G467000	chr7A	91.463	82	7	0	761	842	671525224	671525305	2.130000e-21	113.0
50	TraesCS3A01G467000	chr6D	82.857	140	18	4	761	899	466864259	466864125	1.270000e-23	121.0
51	TraesCS3A01G467000	chr7D	89.157	83	9	0	794	876	574704250	574704332	1.280000e-18	104.0
52	TraesCS3A01G467000	chr2A	76.142	197	38	7	231	424	716905181	716905371	7.700000e-16	95.3
53	TraesCS3A01G467000	chr1B	84.211	76	9	3	325	399	110971025	110971098	1.300000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G467000	chr3A	700574980	700577594	2614	True	4830.000000	4830	100.00000	1	2615	1	chr3A.!!$R2	2614
1	TraesCS3A01G467000	chr3A	701858666	701864018	5352	True	601.000000	1074	91.62975	912	2615	4	chr3A.!!$R3	1703
2	TraesCS3A01G467000	chr3B	755041797	755043499	1702	True	738.333333	1229	93.24000	912	2535	3	chr3B.!!$R2	1623
3	TraesCS3A01G467000	chr3B	756135009	756135981	972	False	521.500000	795	86.96950	2	1126	2	chr3B.!!$F1	1124
4	TraesCS3A01G467000	chr3B	756181117	756182780	1663	False	509.750000	922	89.49025	563	2379	4	chr3B.!!$F2	1816
5	TraesCS3A01G467000	chr3D	567215586	567217320	1734	False	973.000000	1033	90.87000	917	2615	2	chr3D.!!$F1	1698
6	TraesCS3A01G467000	chr3D	569546039	569550724	4685	True	621.400000	1105	92.04720	1	2615	5	chr3D.!!$R1	2614
7	TraesCS3A01G467000	chrUn	324345339	324346312	973	False	525.000000	813	86.70150	2	1126	2	chrUn.!!$F3	1124
8	TraesCS3A01G467000	chrUn	41100205	41102042	1837	False	455.000000	861	89.53820	563	2613	5	chrUn.!!$F2	2050
9	TraesCS3A01G467000	chrUn	389810482	389811034	552	True	273.000000	379	86.64500	563	1284	2	chrUn.!!$R2	721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
49	50	0.392998	ATGGACTCGTGTTGATGGGC	60.393	55.0	0.0	0.0	0.00	5.36	F
425	583	0.456653	CCAAACGCAGCCTTACATGC	60.457	55.0	0.0	0.0	39.09	4.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1063	1595	1.686052	GAGGGAGACGATGAAGCAGAT	59.314	52.381	0.0	0.0	0.00	2.90	R
2146	4398	1.415289	CTCATCTGCCATCACCTAGCA	59.585	52.381	0.0	0.0	34.79	3.49	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
49	50	0.392998	ATGGACTCGTGTTGATGGGC	60.393	55.000	0.00	0.00	0.00	5.36
142	144	1.605232	GATGCATGGATGAATCGCACA	59.395	47.619	2.46	0.00	33.41	4.57
146	148	3.251487	TGCATGGATGAATCGCACATAAG	59.749	43.478	0.00	0.00	0.00	1.73
175	177	2.517166	GAAGAAGATGGGCCCGCC	60.517	66.667	19.37	11.58	0.00	6.13
226	228	2.608546	CGATTGCGTTTCCCGGTTTATA	59.391	45.455	0.00	0.00	36.94	0.98
227	229	3.249080	CGATTGCGTTTCCCGGTTTATAT	59.751	43.478	0.00	0.00	36.94	0.86
269	271	8.357402	GGACTTCCTTTTCTAATACAGCAAAAA	58.643	33.333	0.00	0.00	0.00	1.94
303	305	7.255139	CCCGATTTCAAGAAAACTACAGTTTCT	60.255	37.037	7.76	4.86	46.47	2.52
368	371	6.538189	AAAACCATGGCTTTATTGAAAACG	57.462	33.333	13.04	0.00	0.00	3.60
378	536	6.583427	GGCTTTATTGAAAACGACGGTATTTT	59.417	34.615	0.00	0.00	0.00	1.82
425	583	0.456653	CCAAACGCAGCCTTACATGC	60.457	55.000	0.00	0.00	39.09	4.06
430	588	1.019673	CGCAGCCTTACATGCATTCT	58.980	50.000	0.00	0.00	42.68	2.40
451	609	5.606505	TCTTTTTGCATTTACCCAACTTCC	58.393	37.500	0.00	0.00	0.00	3.46
618	779	8.186821	CCCAAAATAGTGATCAGTCTGAAATTC	58.813	37.037	6.25	0.67	0.00	2.17
646	807	5.277974	CCCAATAGACAACAACAGTCACAAG	60.278	44.000	0.00	0.00	38.46	3.16
682	843	6.173339	ACATAAAGGAGCAGAAATCTCGAAA	58.827	36.000	0.00	0.00	0.00	3.46
698	859	2.099263	TCGAAACAAAAATCAACGGCCA	59.901	40.909	2.24	0.00	0.00	5.36
775	1061	4.338118	TGGGAAACAGTTTTGCTAAGTCTG	59.662	41.667	0.00	11.25	33.68	3.51
777	1063	5.278022	GGGAAACAGTTTTGCTAAGTCTGAG	60.278	44.000	16.69	0.00	33.68	3.35
780	1066	4.051922	ACAGTTTTGCTAAGTCTGAGTCG	58.948	43.478	16.69	0.00	0.00	4.18
782	1068	4.926238	CAGTTTTGCTAAGTCTGAGTCGAT	59.074	41.667	8.55	0.00	0.00	3.59
840	1126	7.571089	TTCTTTGATTTTGCATGAAGATTCG	57.429	32.000	0.00	0.00	0.00	3.34
842	1128	7.815641	TCTTTGATTTTGCATGAAGATTCGTA	58.184	30.769	0.00	0.00	0.00	3.43
898	1184	9.926751	CTTTTTACATGCTATATCACTTGACTG	57.073	33.333	0.00	0.00	0.00	3.51
899	1185	8.437360	TTTTACATGCTATATCACTTGACTGG	57.563	34.615	0.00	0.00	0.00	4.00
900	1186	5.620738	ACATGCTATATCACTTGACTGGT	57.379	39.130	0.00	0.00	0.00	4.00
901	1187	5.363101	ACATGCTATATCACTTGACTGGTG	58.637	41.667	0.00	0.00	36.17	4.17
902	1188	5.129320	ACATGCTATATCACTTGACTGGTGA	59.871	40.000	0.00	0.00	45.84	4.02
903	1189	5.675684	TGCTATATCACTTGACTGGTGAA	57.324	39.130	0.72	0.00	45.09	3.18
904	1190	6.048732	TGCTATATCACTTGACTGGTGAAA	57.951	37.500	0.72	0.00	45.09	2.69
987	1472	2.086054	AGCTAGCAACACCTCTTTCG	57.914	50.000	18.83	0.00	0.00	3.46
988	1473	1.079503	GCTAGCAACACCTCTTTCGG	58.920	55.000	10.63	0.00	0.00	4.30
1012	1544	2.992689	CAAGCATGCCCACTGCCA	60.993	61.111	15.66	0.00	40.56	4.92
1013	1545	2.203669	AAGCATGCCCACTGCCAA	60.204	55.556	15.66	0.00	40.56	4.52
1020	1552	1.827789	GCCCACTGCCAACTGTGAA	60.828	57.895	4.85	0.00	45.73	3.18
1090	1622	2.185494	ATCGTCTCCCTCGCCGTAC	61.185	63.158	0.00	0.00	0.00	3.67
1091	1623	2.605854	ATCGTCTCCCTCGCCGTACT	62.606	60.000	0.00	0.00	0.00	2.73
1092	1624	2.821688	CGTCTCCCTCGCCGTACTC	61.822	68.421	0.00	0.00	0.00	2.59
1259	1794	4.431131	CATCCGCAACCCCAGCCT	62.431	66.667	0.00	0.00	0.00	4.58
1260	1795	4.431131	ATCCGCAACCCCAGCCTG	62.431	66.667	0.00	0.00	0.00	4.85
1319	3427	4.873129	CTACCATGGCGCGCTCGT	62.873	66.667	32.29	22.02	38.14	4.18
1426	3534	3.379445	CCGGGTACGCACCTCAGT	61.379	66.667	10.84	0.00	45.04	3.41
1471	3579	3.986006	GGGACGTGTCGCTCACCA	61.986	66.667	9.54	0.00	43.51	4.17
1548	3656	2.738521	GTGCTCACGGTGTGCGAT	60.739	61.111	24.70	0.00	39.51	4.58
1605	3713	2.598099	TCGTGCCAGTACCGGACA	60.598	61.111	9.46	0.00	0.00	4.02
1673	3781	7.330262	AGCAATATTTGGATTAGTTTTGGTGG	58.670	34.615	0.00	0.00	0.00	4.61
1683	3791	7.507616	TGGATTAGTTTTGGTGGTCATTTACTT	59.492	33.333	0.00	0.00	0.00	2.24
1689	3797	6.968263	TTTGGTGGTCATTTACTTGAATCA	57.032	33.333	0.00	0.00	0.00	2.57
1690	3798	7.537596	TTTGGTGGTCATTTACTTGAATCAT	57.462	32.000	0.00	0.00	0.00	2.45
1691	3799	7.537596	TTGGTGGTCATTTACTTGAATCATT	57.462	32.000	0.00	0.00	0.00	2.57
1831	4078	6.609237	AATGAATACAGATCAATGTGGTCG	57.391	37.500	0.00	0.00	31.44	4.79
1888	4135	5.627499	TTGATGAACACCTAAAGCATGAC	57.373	39.130	0.00	0.00	0.00	3.06
1905	4152	8.807948	AAGCATGACCAACAAATAACTATAGT	57.192	30.769	0.00	0.00	0.00	2.12
1906	4153	8.213518	AGCATGACCAACAAATAACTATAGTG	57.786	34.615	6.06	0.00	0.00	2.74
1907	4154	6.912591	GCATGACCAACAAATAACTATAGTGC	59.087	38.462	6.06	0.00	0.00	4.40
1941	4192	2.357009	CACAGAATGGGCATGAAGTAGC	59.643	50.000	0.00	0.00	43.62	3.58
2071	4322	2.123589	TGACCTTCAACTGAACTCCCA	58.876	47.619	0.00	0.00	0.00	4.37
2169	4421	1.817087	AGGTGATGGCAGATGAGGAT	58.183	50.000	0.00	0.00	0.00	3.24
2177	4429	3.900971	TGGCAGATGAGGATGCAAAATA	58.099	40.909	0.00	0.00	44.37	1.40
2201	4453	5.316167	AGACTATTTTGGTGATGTGCTGAA	58.684	37.500	0.00	0.00	0.00	3.02
2259	4701	1.538075	CACCGGTTAGTTTTGGCGATT	59.462	47.619	2.97	0.00	0.00	3.34
2341	4783	3.248363	CAGTGCTGTTTCTTGTCGATCAA	59.752	43.478	0.00	0.00	34.61	2.57
2343	4785	4.024556	AGTGCTGTTTCTTGTCGATCAAAG	60.025	41.667	0.00	0.00	35.48	2.77
2466	4917	6.214191	TCACAAGTTAATGTTGCAAAAGGA	57.786	33.333	0.00	0.00	0.00	3.36
2516	4967	5.991933	TTATTTGCAAGGGCTTTGTATCA	57.008	34.783	11.21	0.00	41.91	2.15

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
49	50	1.227089	CCCTGCTCGACCGATTGAG	60.227	63.158	0.00	0.00	39.17	3.02
142	144	1.968050	CTTCCGGCCGTCCACCTTAT	61.968	60.000	26.12	0.00	0.00	1.73
146	148	3.952628	CTTCTTCCGGCCGTCCACC	62.953	68.421	26.12	0.00	0.00	4.61
175	177	3.181522	GCTCTCTTCTGCGATTGTTTCTG	60.182	47.826	0.00	0.00	0.00	3.02
240	242	5.586643	GCTGTATTAGAAAAGGAAGTCCCAG	59.413	44.000	0.00	0.00	37.41	4.45
276	278	4.760204	ACTGTAGTTTTCTTGAAATCGGGG	59.240	41.667	0.00	0.00	0.00	5.73
303	305	7.517614	TGGCATGAACAGATACAAAAGTTTA	57.482	32.000	0.00	0.00	0.00	2.01
309	312	5.068329	TGTGTTTGGCATGAACAGATACAAA	59.932	36.000	5.04	0.00	37.65	2.83
378	536	6.508721	GCGCTGTATTTTTGCAGTTTTACAAA	60.509	34.615	0.00	0.00	35.33	2.83
425	583	7.307930	GGAAGTTGGGTAAATGCAAAAAGAATG	60.308	37.037	0.00	0.00	0.00	2.67
430	588	5.129485	TCTGGAAGTTGGGTAAATGCAAAAA	59.871	36.000	0.00	0.00	33.76	1.94
451	609	7.153217	AGTCGGTTTTTATGGGTATTTTCTG	57.847	36.000	0.00	0.00	0.00	3.02
618	779	0.808755	GTTGTTGTCTATTGGGCCCG	59.191	55.000	19.37	1.86	0.00	6.13
659	820	6.092670	TGTTTCGAGATTTCTGCTCCTTTATG	59.907	38.462	0.00	0.00	0.00	1.90
682	843	5.237561	GGTTATTTTGGCCGTTGATTTTTGT	59.762	36.000	0.00	0.00	0.00	2.83
698	859	3.603965	TGTGGGTCACTGGGTTATTTT	57.396	42.857	0.00	0.00	35.11	1.82
775	1061	6.809196	AGACATAACAAAGTCTCAATCGACTC	59.191	38.462	0.00	0.00	43.14	3.36
777	1063	6.952935	AGACATAACAAAGTCTCAATCGAC	57.047	37.500	0.00	0.00	40.96	4.20
814	1100	8.653338	CGAATCTTCATGCAAAATCAAAGAAAT	58.347	29.630	0.00	0.00	0.00	2.17
817	1103	6.680810	ACGAATCTTCATGCAAAATCAAAGA	58.319	32.000	0.00	0.00	0.00	2.52
875	1161	7.495606	CACCAGTCAAGTGATATAGCATGTAAA	59.504	37.037	0.00	0.00	37.42	2.01
987	1472	1.823041	GGGCATGCTTGCTCTCTCC	60.823	63.158	22.27	11.90	46.44	3.71
988	1473	3.824810	GGGCATGCTTGCTCTCTC	58.175	61.111	22.27	6.85	46.44	3.20
1063	1595	1.686052	GAGGGAGACGATGAAGCAGAT	59.314	52.381	0.00	0.00	0.00	2.90
1090	1622	1.827789	CAGCGAGGAGGAGGAGGAG	60.828	68.421	0.00	0.00	0.00	3.69
1091	1623	2.277072	CAGCGAGGAGGAGGAGGA	59.723	66.667	0.00	0.00	0.00	3.71
1092	1624	2.043450	ACAGCGAGGAGGAGGAGG	60.043	66.667	0.00	0.00	0.00	4.30
1548	3656	1.938125	CCGCATGTTGACAACGACA	59.062	52.632	13.46	0.00	43.46	4.35
1605	3713	4.081031	GGGTGGTAAGCTAGCTAGAACTTT	60.081	45.833	25.15	13.66	0.00	2.66
1646	3754	9.868277	CACCAAAACTAATCCAAATATTGCTAA	57.132	29.630	0.00	0.00	0.00	3.09
1651	3759	8.429237	TGACCACCAAAACTAATCCAAATATT	57.571	30.769	0.00	0.00	0.00	1.28
1689	3797	9.762381	TTCACCAACCTTAGGTTTGATAATAAT	57.238	29.630	20.12	0.00	44.33	1.28
1690	3798	9.589461	TTTCACCAACCTTAGGTTTGATAATAA	57.411	29.630	20.12	8.78	44.33	1.40
1691	3799	9.762381	ATTTCACCAACCTTAGGTTTGATAATA	57.238	29.630	20.12	3.59	44.33	0.98
1803	4049	9.685276	ACCACATTGATCTGTATTCATTTTCTA	57.315	29.630	0.00	0.00	0.00	2.10
1811	4057	6.851222	AATCGACCACATTGATCTGTATTC	57.149	37.500	0.00	0.00	30.25	1.75
1815	4062	4.572389	GCTTAATCGACCACATTGATCTGT	59.428	41.667	0.00	0.00	30.25	3.41
1831	4078	5.415701	TGGAACTTGGAACATCAGCTTAATC	59.584	40.000	0.00	0.00	39.30	1.75
1888	4135	6.473131	TCGTACGCACTATAGTTATTTGTTGG	59.527	38.462	11.24	0.00	0.00	3.77
1904	4151	2.050168	TGACCCGTTCGTACGCAC	60.050	61.111	11.24	9.52	46.27	5.34
1905	4152	2.050168	GTGACCCGTTCGTACGCA	60.050	61.111	11.24	0.00	46.27	5.24
1906	4153	2.050168	TGTGACCCGTTCGTACGC	60.050	61.111	11.24	0.00	46.27	4.42
2071	4322	7.396540	AATTTGAGTTTCGAAGCCATAGAAT	57.603	32.000	8.51	1.87	0.00	2.40
2146	4398	1.415289	CTCATCTGCCATCACCTAGCA	59.585	52.381	0.00	0.00	34.79	3.49
2177	4429	5.316167	TCAGCACATCACCAAAATAGTCTT	58.684	37.500	0.00	0.00	0.00	3.01
2201	4453	4.141620	ACCCTCTACATTTTCATCTGCGAT	60.142	41.667	0.00	0.00	0.00	4.58
2259	4701	4.038282	ACATTTTCATCTGCAACTCAGCAA	59.962	37.500	0.00	0.00	45.13	3.91
2341	4783	6.548993	TCTGATACTGATAGTCTGCATGTCTT	59.451	38.462	0.00	0.00	0.00	3.01
2343	4785	6.148948	GTCTGATACTGATAGTCTGCATGTC	58.851	44.000	0.00	0.00	0.00	3.06
2466	4917	3.834231	AGCTGCCCACATTCTTTGTTAAT	59.166	39.130	0.00	0.00	36.00	1.40
2516	4967	2.928801	TGTATATGGTGAATGCCGCT	57.071	45.000	0.00	0.00	0.00	5.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.