Multiple sequence alignment - TraesCS3A01G466300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G466300 chr3A 100.000 2714 0 0 1 2714 700248557 700251270 0.000000e+00 5012.0
1 TraesCS3A01G466300 chr3A 76.364 880 153 29 1176 2011 699983064 699983932 3.230000e-114 422.0
2 TraesCS3A01G466300 chr3A 88.060 201 17 6 455 650 699533377 699533575 5.840000e-57 231.0
3 TraesCS3A01G466300 chr3A 86.567 201 24 3 451 650 701359338 701359536 4.550000e-53 219.0
4 TraesCS3A01G466300 chr3A 76.092 435 85 13 1404 1827 697584660 697584234 2.740000e-50 209.0
5 TraesCS3A01G466300 chr3A 85.500 200 22 5 455 649 699540248 699540445 4.580000e-48 202.0
6 TraesCS3A01G466300 chr3A 83.333 84 8 1 1900 1983 655921561 655921638 3.750000e-09 73.1
7 TraesCS3A01G466300 chr3A 83.333 84 8 1 1900 1983 658200173 658200096 3.750000e-09 73.1
8 TraesCS3A01G466300 chr3B 93.106 1233 73 5 791 2011 754308325 754309557 0.000000e+00 1796.0
9 TraesCS3A01G466300 chr3B 76.959 1072 183 28 794 1835 754330574 754331611 1.100000e-153 553.0
10 TraesCS3A01G466300 chr3B 90.647 417 26 6 243 650 754307873 754308285 2.380000e-150 542.0
11 TraesCS3A01G466300 chr3B 75.449 668 138 17 1181 1835 753995038 753995692 4.390000e-78 302.0
12 TraesCS3A01G466300 chr3B 87.864 206 19 6 447 650 752973259 752973058 1.260000e-58 237.0
13 TraesCS3A01G466300 chr3B 83.459 266 24 7 402 650 754330271 754330533 2.100000e-56 230.0
14 TraesCS3A01G466300 chr3B 73.958 576 131 14 1250 1816 763604842 763605407 5.890000e-52 215.0
15 TraesCS3A01G466300 chr3B 87.719 57 7 0 1253 1309 756252267 756252211 1.740000e-07 67.6
16 TraesCS3A01G466300 chr2A 92.441 635 35 4 2080 2714 735613888 735614509 0.000000e+00 894.0
17 TraesCS3A01G466300 chr2A 85.572 201 27 2 446 645 45080054 45080253 2.740000e-50 209.0
18 TraesCS3A01G466300 chr3D 74.972 895 196 24 951 1830 565642301 565643182 1.180000e-103 387.0
19 TraesCS3A01G466300 chr3D 85.714 259 19 5 409 650 565830681 565830938 9.640000e-65 257.0
20 TraesCS3A01G466300 chr3D 81.588 277 46 3 1556 1830 562418620 562418347 9.780000e-55 224.0
21 TraesCS3A01G466300 chr3D 86.802 197 24 2 455 650 565641914 565642109 4.550000e-53 219.0
22 TraesCS3A01G466300 chr3D 75.520 433 90 12 1404 1827 562465300 562464875 5.930000e-47 198.0
23 TraesCS3A01G466300 chr6B 92.275 233 18 0 2232 2464 346409684 346409452 5.600000e-87 331.0
24 TraesCS3A01G466300 chrUn 76.923 481 98 11 1328 1803 48293507 48293035 7.450000e-66 261.0
25 TraesCS3A01G466300 chr4D 90.210 143 13 1 652 794 353463884 353464025 4.610000e-43 185.0
26 TraesCS3A01G466300 chr6A 94.937 79 4 0 2636 2714 517897858 517897936 1.020000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G466300 chr3A 700248557 700251270 2713 False 5012.0 5012 100.0000 1 2714 1 chr3A.!!$F5 2713
1 TraesCS3A01G466300 chr3A 699983064 699983932 868 False 422.0 422 76.3640 1176 2011 1 chr3A.!!$F4 835
2 TraesCS3A01G466300 chr3B 754307873 754309557 1684 False 1169.0 1796 91.8765 243 2011 2 chr3B.!!$F3 1768
3 TraesCS3A01G466300 chr3B 754330271 754331611 1340 False 391.5 553 80.2090 402 1835 2 chr3B.!!$F4 1433
4 TraesCS3A01G466300 chr3B 753995038 753995692 654 False 302.0 302 75.4490 1181 1835 1 chr3B.!!$F1 654
5 TraesCS3A01G466300 chr3B 763604842 763605407 565 False 215.0 215 73.9580 1250 1816 1 chr3B.!!$F2 566
6 TraesCS3A01G466300 chr2A 735613888 735614509 621 False 894.0 894 92.4410 2080 2714 1 chr2A.!!$F2 634
7 TraesCS3A01G466300 chr3D 565641914 565643182 1268 False 303.0 387 80.8870 455 1830 2 chr3D.!!$F2 1375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 698 0.034337 TCAGTTACCAAGCCGTGACC 59.966 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2227 2337 0.02877 CAAGAAAAACGCCACGCTGA 59.971 50.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.708285 CCTGGTATCTGGTTATATGGTAACC 58.292 44.000 12.53 12.53 45.37 2.85
25 26 6.500751 CCTGGTATCTGGTTATATGGTAACCT 59.499 42.308 17.60 5.78 45.38 3.50
26 27 7.311092 TGGTATCTGGTTATATGGTAACCTG 57.689 40.000 17.60 16.86 45.38 4.00
27 28 6.171213 GGTATCTGGTTATATGGTAACCTGC 58.829 44.000 17.60 8.60 45.38 4.85
28 29 5.904984 ATCTGGTTATATGGTAACCTGCA 57.095 39.130 17.60 10.60 45.38 4.41
29 30 5.904984 TCTGGTTATATGGTAACCTGCAT 57.095 39.130 17.60 0.00 45.38 3.96
30 31 6.260700 TCTGGTTATATGGTAACCTGCATT 57.739 37.500 17.60 0.00 45.38 3.56
31 32 6.061441 TCTGGTTATATGGTAACCTGCATTG 58.939 40.000 17.60 0.00 45.38 2.82
32 33 4.582656 TGGTTATATGGTAACCTGCATTGC 59.417 41.667 17.60 0.46 45.38 3.56
33 34 4.582656 GGTTATATGGTAACCTGCATTGCA 59.417 41.667 11.50 11.50 42.68 4.08
34 35 5.507315 GGTTATATGGTAACCTGCATTGCAC 60.507 44.000 7.38 0.00 42.68 4.57
35 36 1.185315 ATGGTAACCTGCATTGCACC 58.815 50.000 7.38 7.74 33.79 5.01
36 37 0.112218 TGGTAACCTGCATTGCACCT 59.888 50.000 7.38 0.00 33.79 4.00
37 38 1.352687 TGGTAACCTGCATTGCACCTA 59.647 47.619 7.38 0.00 33.79 3.08
38 39 2.017049 GGTAACCTGCATTGCACCTAG 58.983 52.381 7.38 0.00 33.79 3.02
39 40 2.355716 GGTAACCTGCATTGCACCTAGA 60.356 50.000 7.38 0.00 33.79 2.43
40 41 2.119801 AACCTGCATTGCACCTAGAG 57.880 50.000 7.38 0.00 33.79 2.43
41 42 0.393537 ACCTGCATTGCACCTAGAGC 60.394 55.000 7.38 0.00 33.79 4.09
42 43 1.434622 CCTGCATTGCACCTAGAGCG 61.435 60.000 7.38 0.00 33.79 5.03
43 44 1.434622 CTGCATTGCACCTAGAGCGG 61.435 60.000 7.38 0.00 33.79 5.52
44 45 2.828128 GCATTGCACCTAGAGCGGC 61.828 63.158 3.15 0.00 33.85 6.53
45 46 1.450134 CATTGCACCTAGAGCGGCA 60.450 57.895 1.45 0.00 33.85 5.69
46 47 0.816825 CATTGCACCTAGAGCGGCAT 60.817 55.000 1.45 0.00 35.98 4.40
47 48 0.816825 ATTGCACCTAGAGCGGCATG 60.817 55.000 1.45 0.00 35.98 4.06
48 49 2.590007 GCACCTAGAGCGGCATGG 60.590 66.667 1.45 0.79 0.00 3.66
49 50 3.094062 GCACCTAGAGCGGCATGGA 62.094 63.158 1.45 0.00 0.00 3.41
50 51 1.750930 CACCTAGAGCGGCATGGAT 59.249 57.895 1.45 0.00 0.00 3.41
51 52 0.602106 CACCTAGAGCGGCATGGATG 60.602 60.000 1.45 0.00 0.00 3.51
60 61 4.575076 GCATGGATGCGCAAACAA 57.425 50.000 17.11 5.73 44.67 2.83
61 62 2.072490 GCATGGATGCGCAAACAAC 58.928 52.632 17.11 9.58 44.67 3.32
62 63 0.666880 GCATGGATGCGCAAACAACA 60.667 50.000 17.11 9.83 44.67 3.33
63 64 1.999048 CATGGATGCGCAAACAACAT 58.001 45.000 17.11 11.84 0.00 2.71
64 65 1.656594 CATGGATGCGCAAACAACATG 59.343 47.619 17.11 19.42 34.69 3.21
65 66 0.957362 TGGATGCGCAAACAACATGA 59.043 45.000 17.11 0.00 0.00 3.07
66 67 1.545136 TGGATGCGCAAACAACATGAT 59.455 42.857 17.11 0.00 0.00 2.45
67 68 2.751806 TGGATGCGCAAACAACATGATA 59.248 40.909 17.11 0.00 0.00 2.15
68 69 3.192212 TGGATGCGCAAACAACATGATAA 59.808 39.130 17.11 0.00 0.00 1.75
69 70 4.142204 TGGATGCGCAAACAACATGATAAT 60.142 37.500 17.11 0.00 0.00 1.28
70 71 5.067023 TGGATGCGCAAACAACATGATAATA 59.933 36.000 17.11 0.00 0.00 0.98
71 72 5.976534 GGATGCGCAAACAACATGATAATAA 59.023 36.000 17.11 0.00 0.00 1.40
72 73 6.642131 GGATGCGCAAACAACATGATAATAAT 59.358 34.615 17.11 0.00 0.00 1.28
73 74 7.148918 GGATGCGCAAACAACATGATAATAATC 60.149 37.037 17.11 0.00 0.00 1.75
74 75 6.794374 TGCGCAAACAACATGATAATAATCT 58.206 32.000 8.16 0.00 32.93 2.40
75 76 7.257003 TGCGCAAACAACATGATAATAATCTT 58.743 30.769 8.16 0.00 32.93 2.40
76 77 7.431960 TGCGCAAACAACATGATAATAATCTTC 59.568 33.333 8.16 0.00 32.93 2.87
77 78 7.096477 GCGCAAACAACATGATAATAATCTTCC 60.096 37.037 0.30 0.00 32.93 3.46
78 79 7.914871 CGCAAACAACATGATAATAATCTTCCA 59.085 33.333 0.00 0.00 32.93 3.53
79 80 9.585099 GCAAACAACATGATAATAATCTTCCAA 57.415 29.630 0.00 0.00 32.93 3.53
83 84 9.685276 ACAACATGATAATAATCTTCCAAGTCA 57.315 29.630 0.00 0.00 32.93 3.41
89 90 9.565090 TGATAATAATCTTCCAAGTCATTCTGG 57.435 33.333 0.00 0.00 32.93 3.86
90 91 6.705863 AATAATCTTCCAAGTCATTCTGGC 57.294 37.500 0.00 0.00 0.00 4.85
91 92 3.726557 ATCTTCCAAGTCATTCTGGCA 57.273 42.857 0.00 0.00 0.00 4.92
92 93 3.063510 TCTTCCAAGTCATTCTGGCAG 57.936 47.619 8.58 8.58 0.00 4.85
93 94 2.639347 TCTTCCAAGTCATTCTGGCAGA 59.361 45.455 14.43 14.43 0.00 4.26
94 95 3.265221 TCTTCCAAGTCATTCTGGCAGAT 59.735 43.478 19.50 5.83 0.00 2.90
95 96 2.995283 TCCAAGTCATTCTGGCAGATG 58.005 47.619 19.50 17.41 0.00 2.90
96 97 1.404391 CCAAGTCATTCTGGCAGATGC 59.596 52.381 19.50 13.38 41.14 3.91
97 98 1.063616 CAAGTCATTCTGGCAGATGCG 59.936 52.381 19.50 9.86 43.26 4.73
98 99 1.094073 AGTCATTCTGGCAGATGCGC 61.094 55.000 19.50 0.00 43.26 6.09
99 100 2.175621 TCATTCTGGCAGATGCGCG 61.176 57.895 19.50 0.00 43.26 6.86
100 101 3.580193 ATTCTGGCAGATGCGCGC 61.580 61.111 27.26 27.26 43.26 6.86
101 102 4.765449 TTCTGGCAGATGCGCGCT 62.765 61.111 33.29 17.95 43.26 5.92
107 108 2.816958 CAGATGCGCGCTCTGGTT 60.817 61.111 33.78 16.19 37.15 3.67
108 109 2.816958 AGATGCGCGCTCTGGTTG 60.817 61.111 33.29 0.00 0.00 3.77
109 110 3.121030 GATGCGCGCTCTGGTTGT 61.121 61.111 33.29 7.55 0.00 3.32
110 111 2.669569 ATGCGCGCTCTGGTTGTT 60.670 55.556 33.29 2.56 0.00 2.83
111 112 2.568935 GATGCGCGCTCTGGTTGTTC 62.569 60.000 33.29 10.62 0.00 3.18
112 113 4.090057 GCGCGCTCTGGTTGTTCC 62.090 66.667 26.67 0.00 0.00 3.62
113 114 2.357517 CGCGCTCTGGTTGTTCCT 60.358 61.111 5.56 0.00 37.07 3.36
114 115 1.961277 CGCGCTCTGGTTGTTCCTT 60.961 57.895 5.56 0.00 37.07 3.36
115 116 1.576421 GCGCTCTGGTTGTTCCTTG 59.424 57.895 0.00 0.00 37.07 3.61
116 117 1.576421 CGCTCTGGTTGTTCCTTGC 59.424 57.895 0.00 0.00 37.07 4.01
117 118 1.576421 GCTCTGGTTGTTCCTTGCG 59.424 57.895 0.00 0.00 37.07 4.85
118 119 1.856265 GCTCTGGTTGTTCCTTGCGG 61.856 60.000 0.00 0.00 37.07 5.69
119 120 1.856265 CTCTGGTTGTTCCTTGCGGC 61.856 60.000 0.00 0.00 37.07 6.53
120 121 3.254014 CTGGTTGTTCCTTGCGGCG 62.254 63.158 0.51 0.51 37.07 6.46
121 122 4.038080 GGTTGTTCCTTGCGGCGG 62.038 66.667 9.78 0.00 0.00 6.13
122 123 3.284449 GTTGTTCCTTGCGGCGGT 61.284 61.111 9.78 0.00 0.00 5.68
123 124 3.283684 TTGTTCCTTGCGGCGGTG 61.284 61.111 9.78 0.00 0.00 4.94
124 125 3.758973 TTGTTCCTTGCGGCGGTGA 62.759 57.895 9.78 0.00 0.00 4.02
125 126 3.723348 GTTCCTTGCGGCGGTGAC 61.723 66.667 9.78 0.00 0.00 3.67
129 130 4.988598 CTTGCGGCGGTGACCTGT 62.989 66.667 9.78 0.00 0.00 4.00
130 131 4.555709 TTGCGGCGGTGACCTGTT 62.556 61.111 9.78 0.00 0.00 3.16
131 132 4.555709 TGCGGCGGTGACCTGTTT 62.556 61.111 9.78 0.00 0.00 2.83
132 133 4.025401 GCGGCGGTGACCTGTTTG 62.025 66.667 9.78 0.00 0.00 2.93
133 134 2.280524 CGGCGGTGACCTGTTTGA 60.281 61.111 0.00 0.00 0.00 2.69
134 135 2.317609 CGGCGGTGACCTGTTTGAG 61.318 63.158 0.00 0.00 0.00 3.02
135 136 1.070786 GGCGGTGACCTGTTTGAGA 59.929 57.895 0.00 0.00 0.00 3.27
136 137 0.321653 GGCGGTGACCTGTTTGAGAT 60.322 55.000 0.00 0.00 0.00 2.75
137 138 0.798776 GCGGTGACCTGTTTGAGATG 59.201 55.000 0.00 0.00 0.00 2.90
138 139 1.442769 CGGTGACCTGTTTGAGATGG 58.557 55.000 0.00 0.00 0.00 3.51
139 140 1.001974 CGGTGACCTGTTTGAGATGGA 59.998 52.381 0.00 0.00 0.00 3.41
140 141 2.355108 CGGTGACCTGTTTGAGATGGAT 60.355 50.000 0.00 0.00 0.00 3.41
141 142 3.012518 GGTGACCTGTTTGAGATGGATG 58.987 50.000 0.00 0.00 0.00 3.51
142 143 3.012518 GTGACCTGTTTGAGATGGATGG 58.987 50.000 0.00 0.00 0.00 3.51
143 144 2.912295 TGACCTGTTTGAGATGGATGGA 59.088 45.455 0.00 0.00 0.00 3.41
144 145 3.054875 TGACCTGTTTGAGATGGATGGAG 60.055 47.826 0.00 0.00 0.00 3.86
145 146 2.915604 ACCTGTTTGAGATGGATGGAGT 59.084 45.455 0.00 0.00 0.00 3.85
146 147 3.054802 ACCTGTTTGAGATGGATGGAGTC 60.055 47.826 0.00 0.00 0.00 3.36
147 148 3.193263 CTGTTTGAGATGGATGGAGTCG 58.807 50.000 0.00 0.00 0.00 4.18
148 149 1.936547 GTTTGAGATGGATGGAGTCGC 59.063 52.381 0.00 0.00 0.00 5.19
149 150 1.194218 TTGAGATGGATGGAGTCGCA 58.806 50.000 0.00 0.00 0.00 5.10
150 151 1.194218 TGAGATGGATGGAGTCGCAA 58.806 50.000 0.00 0.00 0.00 4.85
151 152 1.764723 TGAGATGGATGGAGTCGCAAT 59.235 47.619 0.00 0.00 0.00 3.56
152 153 2.965147 TGAGATGGATGGAGTCGCAATA 59.035 45.455 0.00 0.00 0.00 1.90
153 154 3.006217 TGAGATGGATGGAGTCGCAATAG 59.994 47.826 0.00 0.00 0.00 1.73
154 155 2.968574 AGATGGATGGAGTCGCAATAGT 59.031 45.455 0.00 0.00 0.00 2.12
155 156 4.152647 AGATGGATGGAGTCGCAATAGTA 58.847 43.478 0.00 0.00 0.00 1.82
156 157 3.728076 TGGATGGAGTCGCAATAGTAC 57.272 47.619 0.00 0.00 0.00 2.73
157 158 3.296854 TGGATGGAGTCGCAATAGTACT 58.703 45.455 0.00 0.00 0.00 2.73
158 159 3.704566 TGGATGGAGTCGCAATAGTACTT 59.295 43.478 0.00 0.00 0.00 2.24
159 160 4.891168 TGGATGGAGTCGCAATAGTACTTA 59.109 41.667 0.00 0.00 0.00 2.24
160 161 5.538813 TGGATGGAGTCGCAATAGTACTTAT 59.461 40.000 0.00 0.00 0.00 1.73
161 162 6.041637 TGGATGGAGTCGCAATAGTACTTATT 59.958 38.462 0.00 0.00 32.08 1.40
162 163 6.929606 GGATGGAGTCGCAATAGTACTTATTT 59.070 38.462 0.00 0.00 29.37 1.40
163 164 7.441458 GGATGGAGTCGCAATAGTACTTATTTT 59.559 37.037 0.00 0.00 29.37 1.82
164 165 7.766219 TGGAGTCGCAATAGTACTTATTTTC 57.234 36.000 0.00 0.00 29.37 2.29
165 166 6.759827 TGGAGTCGCAATAGTACTTATTTTCC 59.240 38.462 0.00 0.00 29.37 3.13
166 167 6.759827 GGAGTCGCAATAGTACTTATTTTCCA 59.240 38.462 0.00 0.00 29.37 3.53
167 168 7.042658 GGAGTCGCAATAGTACTTATTTTCCAG 60.043 40.741 0.00 0.00 29.37 3.86
168 169 6.761714 AGTCGCAATAGTACTTATTTTCCAGG 59.238 38.462 0.00 0.00 29.37 4.45
169 170 6.759827 GTCGCAATAGTACTTATTTTCCAGGA 59.240 38.462 0.00 0.00 29.37 3.86
170 171 7.441458 GTCGCAATAGTACTTATTTTCCAGGAT 59.559 37.037 0.00 0.00 29.37 3.24
171 172 7.990886 TCGCAATAGTACTTATTTTCCAGGATT 59.009 33.333 0.00 0.00 29.37 3.01
172 173 8.621286 CGCAATAGTACTTATTTTCCAGGATTT 58.379 33.333 0.00 0.00 29.37 2.17
207 208 8.996024 TTTTTCAAAATCTCGAAGGAAAGTTT 57.004 26.923 0.00 0.00 0.00 2.66
208 209 8.996024 TTTTCAAAATCTCGAAGGAAAGTTTT 57.004 26.923 0.00 0.00 0.00 2.43
209 210 8.996024 TTTCAAAATCTCGAAGGAAAGTTTTT 57.004 26.923 0.00 0.00 0.00 1.94
245 246 9.917129 AAATATTTTGTTTCTTTAGGGGTAACG 57.083 29.630 0.00 0.00 37.60 3.18
246 247 5.771153 TTTTGTTTCTTTAGGGGTAACGG 57.229 39.130 0.00 0.00 37.60 4.44
247 248 4.436113 TTGTTTCTTTAGGGGTAACGGT 57.564 40.909 0.00 0.00 37.60 4.83
248 249 5.559148 TTGTTTCTTTAGGGGTAACGGTA 57.441 39.130 0.00 0.00 37.60 4.02
249 250 5.151297 TGTTTCTTTAGGGGTAACGGTAG 57.849 43.478 0.00 0.00 37.60 3.18
262 263 7.047271 GGGGTAACGGTAGAATATTTTGTACA 58.953 38.462 5.74 0.00 34.19 2.90
282 283 6.917477 TGTACAATCAAAATTGAGTTGACAGC 59.083 34.615 17.37 0.00 44.25 4.40
288 289 4.935885 AAATTGAGTTGACAGCGATCTC 57.064 40.909 0.00 0.00 0.00 2.75
347 348 2.046285 CCGTTTCAGTGCCCATCCC 61.046 63.158 0.00 0.00 0.00 3.85
404 408 1.636519 ACGGTTAAACCCATCCCATCA 59.363 47.619 0.00 0.00 33.75 3.07
405 409 2.021457 CGGTTAAACCCATCCCATCAC 58.979 52.381 0.00 0.00 33.75 3.06
406 410 2.619332 CGGTTAAACCCATCCCATCACA 60.619 50.000 0.00 0.00 33.75 3.58
407 411 3.642141 GGTTAAACCCATCCCATCACAT 58.358 45.455 0.00 0.00 30.04 3.21
453 458 0.815734 GACGGATCGAGAAACCAGGA 59.184 55.000 0.00 0.00 0.00 3.86
653 673 3.399181 CGCCAGCCCACCCTTCTA 61.399 66.667 0.00 0.00 0.00 2.10
656 676 0.753111 GCCAGCCCACCCTTCTAATG 60.753 60.000 0.00 0.00 0.00 1.90
658 678 1.097547 CAGCCCACCCTTCTAATGCG 61.098 60.000 0.00 0.00 0.00 4.73
659 679 1.077716 GCCCACCCTTCTAATGCGT 60.078 57.895 0.00 0.00 0.00 5.24
660 680 1.095807 GCCCACCCTTCTAATGCGTC 61.096 60.000 0.00 0.00 0.00 5.19
662 682 1.656652 CCACCCTTCTAATGCGTCAG 58.343 55.000 0.00 0.00 0.00 3.51
664 684 2.615493 CCACCCTTCTAATGCGTCAGTT 60.615 50.000 0.00 0.00 0.00 3.16
665 685 3.369052 CCACCCTTCTAATGCGTCAGTTA 60.369 47.826 0.00 0.00 0.00 2.24
666 686 3.617263 CACCCTTCTAATGCGTCAGTTAC 59.383 47.826 0.00 0.00 0.00 2.50
668 688 3.369052 CCCTTCTAATGCGTCAGTTACCA 60.369 47.826 0.00 0.00 0.00 3.25
670 690 4.330074 CCTTCTAATGCGTCAGTTACCAAG 59.670 45.833 0.00 0.00 0.00 3.61
671 691 3.259064 TCTAATGCGTCAGTTACCAAGC 58.741 45.455 0.00 0.00 0.00 4.01
673 693 1.019278 ATGCGTCAGTTACCAAGCCG 61.019 55.000 0.00 0.00 0.00 5.52
675 695 1.897398 GCGTCAGTTACCAAGCCGTG 61.897 60.000 0.00 0.00 0.00 4.94
676 696 0.319211 CGTCAGTTACCAAGCCGTGA 60.319 55.000 0.00 0.00 0.00 4.35
678 698 0.034337 TCAGTTACCAAGCCGTGACC 59.966 55.000 0.00 0.00 0.00 4.02
680 700 0.690762 AGTTACCAAGCCGTGACCAT 59.309 50.000 0.00 0.00 0.00 3.55
682 702 2.093658 AGTTACCAAGCCGTGACCATAG 60.094 50.000 0.00 0.00 0.00 2.23
683 703 1.563924 TACCAAGCCGTGACCATAGT 58.436 50.000 0.00 0.00 0.00 2.12
684 704 0.690762 ACCAAGCCGTGACCATAGTT 59.309 50.000 0.00 0.00 0.00 2.24
685 705 1.086696 CCAAGCCGTGACCATAGTTG 58.913 55.000 0.00 0.00 0.00 3.16
687 707 2.422597 CAAGCCGTGACCATAGTTGAA 58.577 47.619 0.00 0.00 0.00 2.69
688 708 3.009723 CAAGCCGTGACCATAGTTGAAT 58.990 45.455 0.00 0.00 0.00 2.57
690 710 2.236146 AGCCGTGACCATAGTTGAATCA 59.764 45.455 0.00 0.00 0.00 2.57
691 711 2.351726 GCCGTGACCATAGTTGAATCAC 59.648 50.000 0.00 0.00 36.33 3.06
692 712 3.595173 CCGTGACCATAGTTGAATCACA 58.405 45.455 0.00 0.00 38.05 3.58
693 713 4.191544 CCGTGACCATAGTTGAATCACAT 58.808 43.478 0.00 0.00 38.05 3.21
694 714 5.356426 CCGTGACCATAGTTGAATCACATA 58.644 41.667 0.00 0.00 38.05 2.29
695 715 5.815222 CCGTGACCATAGTTGAATCACATAA 59.185 40.000 0.00 0.00 38.05 1.90
697 717 7.012327 CCGTGACCATAGTTGAATCACATAATT 59.988 37.037 0.00 0.00 38.05 1.40
698 718 8.397906 CGTGACCATAGTTGAATCACATAATTT 58.602 33.333 0.00 0.00 38.05 1.82
699 719 9.507280 GTGACCATAGTTGAATCACATAATTTG 57.493 33.333 0.00 0.00 38.06 2.32
700 720 9.241919 TGACCATAGTTGAATCACATAATTTGT 57.758 29.630 0.00 0.00 39.91 2.83
734 754 6.983474 AAAGAAAAACAATTGTTGAGGTGG 57.017 33.333 23.93 0.00 38.44 4.61
735 755 4.441792 AGAAAAACAATTGTTGAGGTGGC 58.558 39.130 23.93 9.76 38.44 5.01
736 756 3.902881 AAAACAATTGTTGAGGTGGCA 57.097 38.095 23.93 0.00 38.44 4.92
737 757 2.888834 AACAATTGTTGAGGTGGCAC 57.111 45.000 22.71 9.70 36.80 5.01
738 758 2.071778 ACAATTGTTGAGGTGGCACT 57.928 45.000 18.45 3.24 0.00 4.40
739 759 2.387757 ACAATTGTTGAGGTGGCACTT 58.612 42.857 18.45 10.43 0.00 3.16
740 760 2.101249 ACAATTGTTGAGGTGGCACTTG 59.899 45.455 18.45 13.26 0.00 3.16
741 761 0.675633 ATTGTTGAGGTGGCACTTGC 59.324 50.000 18.45 7.71 41.14 4.01
742 762 0.395586 TTGTTGAGGTGGCACTTGCT 60.396 50.000 18.45 6.05 41.70 3.91
743 763 1.102809 TGTTGAGGTGGCACTTGCTG 61.103 55.000 18.45 0.00 41.70 4.41
744 764 0.819259 GTTGAGGTGGCACTTGCTGA 60.819 55.000 18.45 0.00 41.70 4.26
745 765 0.535780 TTGAGGTGGCACTTGCTGAG 60.536 55.000 18.45 0.00 41.70 3.35
746 766 1.673665 GAGGTGGCACTTGCTGAGG 60.674 63.158 18.45 0.00 41.70 3.86
747 767 2.113986 GGTGGCACTTGCTGAGGT 59.886 61.111 18.45 0.00 41.70 3.85
748 768 2.263741 GGTGGCACTTGCTGAGGTG 61.264 63.158 18.45 0.00 41.70 4.00
749 769 1.227943 GTGGCACTTGCTGAGGTGA 60.228 57.895 11.13 0.00 41.70 4.02
750 770 0.819259 GTGGCACTTGCTGAGGTGAA 60.819 55.000 11.13 0.00 41.70 3.18
751 771 0.111061 TGGCACTTGCTGAGGTGAAT 59.889 50.000 0.38 0.00 41.70 2.57
752 772 1.350684 TGGCACTTGCTGAGGTGAATA 59.649 47.619 0.38 0.00 41.70 1.75
753 773 2.012673 GGCACTTGCTGAGGTGAATAG 58.987 52.381 0.38 0.00 41.70 1.73
754 774 2.355108 GGCACTTGCTGAGGTGAATAGA 60.355 50.000 0.38 0.00 41.70 1.98
755 775 2.675348 GCACTTGCTGAGGTGAATAGAC 59.325 50.000 0.00 0.00 38.21 2.59
756 776 3.618507 GCACTTGCTGAGGTGAATAGACT 60.619 47.826 0.00 0.00 38.21 3.24
757 777 3.931468 CACTTGCTGAGGTGAATAGACTG 59.069 47.826 0.00 0.00 35.69 3.51
758 778 2.680312 TGCTGAGGTGAATAGACTGC 57.320 50.000 0.00 0.00 0.00 4.40
759 779 1.901833 TGCTGAGGTGAATAGACTGCA 59.098 47.619 0.00 0.00 34.28 4.41
760 780 2.502947 TGCTGAGGTGAATAGACTGCAT 59.497 45.455 0.00 0.00 32.44 3.96
761 781 3.054875 TGCTGAGGTGAATAGACTGCATT 60.055 43.478 0.00 0.00 32.44 3.56
762 782 3.944015 GCTGAGGTGAATAGACTGCATTT 59.056 43.478 0.00 0.00 0.00 2.32
763 783 4.034975 GCTGAGGTGAATAGACTGCATTTC 59.965 45.833 0.00 0.00 0.00 2.17
764 784 5.164620 TGAGGTGAATAGACTGCATTTCA 57.835 39.130 0.00 0.00 0.00 2.69
765 785 5.559770 TGAGGTGAATAGACTGCATTTCAA 58.440 37.500 0.00 0.00 30.51 2.69
766 786 5.645067 TGAGGTGAATAGACTGCATTTCAAG 59.355 40.000 0.00 0.00 30.51 3.02
767 787 5.809001 AGGTGAATAGACTGCATTTCAAGA 58.191 37.500 0.00 0.00 30.51 3.02
768 788 5.879223 AGGTGAATAGACTGCATTTCAAGAG 59.121 40.000 0.00 0.00 30.51 2.85
769 789 5.877012 GGTGAATAGACTGCATTTCAAGAGA 59.123 40.000 0.00 0.00 30.51 3.10
770 790 6.372659 GGTGAATAGACTGCATTTCAAGAGAA 59.627 38.462 0.00 0.00 30.51 2.87
771 791 7.094634 GGTGAATAGACTGCATTTCAAGAGAAA 60.095 37.037 0.00 0.00 46.90 2.52
785 805 8.609617 TTTCAAGAGAAATAGGATAGTGAGGA 57.390 34.615 0.00 0.00 38.76 3.71
786 806 8.789767 TTCAAGAGAAATAGGATAGTGAGGAT 57.210 34.615 0.00 0.00 0.00 3.24
787 807 8.415950 TCAAGAGAAATAGGATAGTGAGGATC 57.584 38.462 0.00 0.00 0.00 3.36
867 896 2.580326 GCGTGATTTGGCGGCATG 60.580 61.111 14.32 0.00 0.00 4.06
982 1014 0.601841 CTACAACCCGGCAACTCGTT 60.602 55.000 0.00 0.00 0.00 3.85
984 1016 0.179051 ACAACCCGGCAACTCGTTAA 60.179 50.000 0.00 0.00 0.00 2.01
996 1028 5.277058 GGCAACTCGTTAATATGCTTCTCTG 60.277 44.000 0.00 0.00 37.20 3.35
999 1031 6.208988 ACTCGTTAATATGCTTCTCTGTCA 57.791 37.500 0.00 0.00 0.00 3.58
1018 1050 0.893447 AATGCTTTCAGGCTTCAGGC 59.107 50.000 0.00 0.00 41.43 4.85
1034 1066 1.281867 CAGGCTCTTGGGAATGTACCA 59.718 52.381 0.00 0.00 35.88 3.25
1086 1118 2.639327 GCACCATTGCCAGTGGTCC 61.639 63.158 9.19 0.00 46.79 4.46
1129 1173 2.439507 TCCTATGTCTTCTCATTGGGCC 59.560 50.000 0.00 0.00 39.74 5.80
1231 1278 3.066291 TGCATTGGTACCGAATGAAGT 57.934 42.857 27.36 3.63 33.36 3.01
1234 1281 1.816074 TTGGTACCGAATGAAGTGCC 58.184 50.000 7.57 0.00 39.04 5.01
1246 1293 1.152546 AAGTGCCGGGGAAAAAGCT 60.153 52.632 2.18 0.00 0.00 3.74
1317 1364 1.247567 CTCCAAATGTTTCTGGCGGT 58.752 50.000 0.00 0.00 32.33 5.68
1332 1382 1.472728 GGCGGTGTCGACCTATTTGAT 60.473 52.381 14.12 0.00 40.58 2.57
1430 1483 1.270907 AGCGAGGTCTGGACTTTCAT 58.729 50.000 0.67 0.00 0.00 2.57
1433 1486 2.094182 GCGAGGTCTGGACTTTCATGTA 60.094 50.000 0.00 0.00 0.00 2.29
1505 1564 1.599542 GAGTGCCGATATTTGGAGTGC 59.400 52.381 0.00 0.00 0.00 4.40
1634 1694 4.141688 GGGAGTCGTTCCTATCCAATTTCT 60.142 45.833 8.28 0.00 45.98 2.52
1707 1780 8.145122 GGTTATGTTGTGAACCATTTTCCTTTA 58.855 33.333 0.00 0.00 43.91 1.85
1808 1885 8.316946 TGAATTGGATCTATTATGAGCCTAGTG 58.683 37.037 0.00 0.00 42.52 2.74
1856 1962 9.539825 TTGTAATAAAGAAATGCATGTTTGTGT 57.460 25.926 0.00 0.00 0.00 3.72
1857 1963 9.190858 TGTAATAAAGAAATGCATGTTTGTGTC 57.809 29.630 0.00 0.00 0.00 3.67
1894 2000 0.732571 AAGGGATTATTGTGCGCGTG 59.267 50.000 8.43 0.00 0.00 5.34
1944 2050 5.745294 GGCATGTGTTTGAAATATGTGCTAG 59.255 40.000 11.60 0.00 0.00 3.42
2011 2121 8.111545 TCACTTCGGTATATTTATCTAGGCCTA 58.888 37.037 13.09 13.09 0.00 3.93
2012 2122 8.746530 CACTTCGGTATATTTATCTAGGCCTAA 58.253 37.037 14.85 5.54 0.00 2.69
2013 2123 9.317827 ACTTCGGTATATTTATCTAGGCCTAAA 57.682 33.333 14.85 7.45 0.00 1.85
2027 2137 8.722622 TCTAGGCCTAAATATAAGTTAGCAGT 57.277 34.615 14.85 0.00 0.00 4.40
2028 2138 9.818270 TCTAGGCCTAAATATAAGTTAGCAGTA 57.182 33.333 14.85 0.00 0.00 2.74
2029 2139 9.857957 CTAGGCCTAAATATAAGTTAGCAGTAC 57.142 37.037 14.85 0.00 0.00 2.73
2030 2140 8.258850 AGGCCTAAATATAAGTTAGCAGTACA 57.741 34.615 1.29 0.00 0.00 2.90
2031 2141 8.148999 AGGCCTAAATATAAGTTAGCAGTACAC 58.851 37.037 1.29 0.00 0.00 2.90
2032 2142 8.148999 GGCCTAAATATAAGTTAGCAGTACACT 58.851 37.037 0.00 0.00 0.00 3.55
2033 2143 8.979574 GCCTAAATATAAGTTAGCAGTACACTG 58.020 37.037 4.96 4.96 46.40 3.66
2038 2148 4.813296 AAGTTAGCAGTACACTGTTTGC 57.187 40.909 10.87 9.29 45.45 3.68
2040 2150 4.058817 AGTTAGCAGTACACTGTTTGCTC 58.941 43.478 18.78 9.89 45.04 4.26
2041 2151 1.884235 AGCAGTACACTGTTTGCTCC 58.116 50.000 10.87 0.00 42.89 4.70
2042 2152 0.875059 GCAGTACACTGTTTGCTCCC 59.125 55.000 10.87 0.00 45.45 4.30
2043 2153 1.148310 CAGTACACTGTTTGCTCCCG 58.852 55.000 1.02 0.00 39.09 5.14
2044 2154 0.756903 AGTACACTGTTTGCTCCCGT 59.243 50.000 0.00 0.00 0.00 5.28
2045 2155 1.145803 GTACACTGTTTGCTCCCGTC 58.854 55.000 0.00 0.00 0.00 4.79
2046 2156 0.753867 TACACTGTTTGCTCCCGTCA 59.246 50.000 0.00 0.00 0.00 4.35
2047 2157 0.814010 ACACTGTTTGCTCCCGTCAC 60.814 55.000 0.00 0.00 0.00 3.67
2048 2158 0.532862 CACTGTTTGCTCCCGTCACT 60.533 55.000 0.00 0.00 0.00 3.41
2049 2159 1.045407 ACTGTTTGCTCCCGTCACTA 58.955 50.000 0.00 0.00 0.00 2.74
2050 2160 1.414919 ACTGTTTGCTCCCGTCACTAA 59.585 47.619 0.00 0.00 0.00 2.24
2051 2161 2.038557 ACTGTTTGCTCCCGTCACTAAT 59.961 45.455 0.00 0.00 0.00 1.73
2052 2162 3.074412 CTGTTTGCTCCCGTCACTAATT 58.926 45.455 0.00 0.00 0.00 1.40
2053 2163 4.250464 CTGTTTGCTCCCGTCACTAATTA 58.750 43.478 0.00 0.00 0.00 1.40
2054 2164 3.998341 TGTTTGCTCCCGTCACTAATTAC 59.002 43.478 0.00 0.00 0.00 1.89
2055 2165 2.973694 TGCTCCCGTCACTAATTACC 57.026 50.000 0.00 0.00 0.00 2.85
2056 2166 2.181125 TGCTCCCGTCACTAATTACCA 58.819 47.619 0.00 0.00 0.00 3.25
2057 2167 2.167693 TGCTCCCGTCACTAATTACCAG 59.832 50.000 0.00 0.00 0.00 4.00
2058 2168 2.429610 GCTCCCGTCACTAATTACCAGA 59.570 50.000 0.00 0.00 0.00 3.86
2059 2169 3.737355 GCTCCCGTCACTAATTACCAGAC 60.737 52.174 0.00 0.00 0.00 3.51
2065 2175 4.288531 GTCACTAATTACCAGACGATCCG 58.711 47.826 0.00 0.00 0.00 4.18
2066 2176 4.036027 GTCACTAATTACCAGACGATCCGA 59.964 45.833 0.00 0.00 0.00 4.55
2067 2177 4.641541 TCACTAATTACCAGACGATCCGAA 59.358 41.667 0.00 0.00 0.00 4.30
2068 2178 5.125900 TCACTAATTACCAGACGATCCGAAA 59.874 40.000 0.00 0.00 0.00 3.46
2069 2179 5.983720 CACTAATTACCAGACGATCCGAAAT 59.016 40.000 0.00 0.00 0.00 2.17
2070 2180 6.479001 CACTAATTACCAGACGATCCGAAATT 59.521 38.462 0.00 0.00 0.00 1.82
2071 2181 7.650504 CACTAATTACCAGACGATCCGAAATTA 59.349 37.037 0.00 0.00 0.00 1.40
2072 2182 7.866393 ACTAATTACCAGACGATCCGAAATTAG 59.134 37.037 14.46 14.46 39.68 1.73
2073 2183 2.822764 ACCAGACGATCCGAAATTAGC 58.177 47.619 0.00 0.00 0.00 3.09
2074 2184 1.787155 CCAGACGATCCGAAATTAGCG 59.213 52.381 0.00 0.00 0.00 4.26
2083 2193 1.083489 CGAAATTAGCGGAGTTGCCA 58.917 50.000 0.00 0.00 35.94 4.92
2119 2229 3.470888 CTCGGGCGGTGATCCCTT 61.471 66.667 0.00 0.00 41.69 3.95
2154 2264 2.660064 GCCACCTCCCGTCACATCT 61.660 63.158 0.00 0.00 0.00 2.90
2155 2265 1.517832 CCACCTCCCGTCACATCTC 59.482 63.158 0.00 0.00 0.00 2.75
2156 2266 0.972983 CCACCTCCCGTCACATCTCT 60.973 60.000 0.00 0.00 0.00 3.10
2157 2267 0.898320 CACCTCCCGTCACATCTCTT 59.102 55.000 0.00 0.00 0.00 2.85
2164 2274 0.171231 CGTCACATCTCTTCTCGCCA 59.829 55.000 0.00 0.00 0.00 5.69
2228 2338 4.840005 GGGGCGGTGCTACAGCTC 62.840 72.222 2.44 6.96 39.12 4.09
2235 2345 2.097038 GTGCTACAGCTCAGCGTGG 61.097 63.158 11.28 3.06 42.13 4.94
2262 2372 1.746727 CTTGATCTGAAGCGACGGCG 61.747 60.000 6.12 6.12 46.35 6.46
2273 2383 1.588932 CGACGGCGATACATGCAGT 60.589 57.895 16.62 0.00 43.40 4.40
2307 2417 0.893727 GGTTGGCCTTGGGTGTAGTG 60.894 60.000 3.32 0.00 0.00 2.74
2318 2428 0.796312 GGTGTAGTGGATGTTGTGCG 59.204 55.000 0.00 0.00 0.00 5.34
2345 2455 1.098050 GGATGGCTTTGTGCTACCTG 58.902 55.000 0.00 0.00 42.39 4.00
2462 2572 2.240612 GACATTGTGACGGCGGCTTC 62.241 60.000 16.45 8.65 0.00 3.86
2525 2635 0.179100 TGCGCTTCTGATCTACTGGC 60.179 55.000 9.73 0.00 0.00 4.85
2526 2636 0.878086 GCGCTTCTGATCTACTGGCC 60.878 60.000 0.00 0.00 0.00 5.36
2558 2668 2.359850 GCACTCCGGCCATGTCAA 60.360 61.111 2.24 0.00 0.00 3.18
2613 2723 0.953960 GATCGGTGGTGTTTTCCGCT 60.954 55.000 0.00 0.00 43.35 5.52
2616 2726 0.601841 CGGTGGTGTTTTCCGCTAGT 60.602 55.000 0.00 0.00 37.90 2.57
2663 2773 2.102553 GCCTACGACAGCGGACTC 59.897 66.667 0.00 0.00 43.17 3.36
2664 2774 2.697761 GCCTACGACAGCGGACTCA 61.698 63.158 0.00 0.00 43.17 3.41
2665 2775 1.136984 CCTACGACAGCGGACTCAC 59.863 63.158 0.00 0.00 43.17 3.51
2666 2776 1.583495 CCTACGACAGCGGACTCACA 61.583 60.000 0.00 0.00 43.17 3.58
2667 2777 0.452184 CTACGACAGCGGACTCACAT 59.548 55.000 0.00 0.00 43.17 3.21
2668 2778 0.450583 TACGACAGCGGACTCACATC 59.549 55.000 0.00 0.00 43.17 3.06
2669 2779 1.869574 CGACAGCGGACTCACATCG 60.870 63.158 0.00 0.00 0.00 3.84
2670 2780 1.517257 GACAGCGGACTCACATCGG 60.517 63.158 0.00 0.00 0.00 4.18
2671 2781 1.934220 GACAGCGGACTCACATCGGA 61.934 60.000 0.00 0.00 0.00 4.55
2672 2782 1.323271 ACAGCGGACTCACATCGGAT 61.323 55.000 0.00 0.00 0.00 4.18
2673 2783 0.179100 CAGCGGACTCACATCGGATT 60.179 55.000 0.00 0.00 0.00 3.01
2674 2784 0.179100 AGCGGACTCACATCGGATTG 60.179 55.000 0.00 0.00 0.00 2.67
2675 2785 0.460284 GCGGACTCACATCGGATTGT 60.460 55.000 0.00 0.00 0.00 2.71
2707 2817 0.832135 AAGGTCTTCGTGAGGGCTCA 60.832 55.000 0.00 0.00 37.24 4.26
2709 2819 0.179097 GGTCTTCGTGAGGGCTCATC 60.179 60.000 0.00 0.00 42.18 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.708285 GGTTACCATATAACCAGATACCAGG 58.292 44.000 10.34 0.00 44.72 4.45
10 11 4.582656 TGCAATGCAGGTTACCATATAACC 59.417 41.667 2.72 7.63 45.47 2.85
11 12 5.507315 GGTGCAATGCAGGTTACCATATAAC 60.507 44.000 8.73 0.00 40.08 1.89
12 13 4.582656 GGTGCAATGCAGGTTACCATATAA 59.417 41.667 8.73 0.00 40.08 0.98
13 14 4.141274 AGGTGCAATGCAGGTTACCATATA 60.141 41.667 8.73 0.00 40.08 0.86
14 15 2.958355 GGTGCAATGCAGGTTACCATAT 59.042 45.455 8.73 0.00 40.08 1.78
15 16 2.025416 AGGTGCAATGCAGGTTACCATA 60.025 45.455 8.73 0.00 40.08 2.74
16 17 1.185315 GGTGCAATGCAGGTTACCAT 58.815 50.000 8.73 0.00 40.08 3.55
17 18 0.112218 AGGTGCAATGCAGGTTACCA 59.888 50.000 8.73 0.00 40.08 3.25
18 19 2.017049 CTAGGTGCAATGCAGGTTACC 58.983 52.381 8.73 5.86 40.08 2.85
19 20 2.939103 CTCTAGGTGCAATGCAGGTTAC 59.061 50.000 8.73 0.00 40.08 2.50
20 21 2.680805 GCTCTAGGTGCAATGCAGGTTA 60.681 50.000 8.73 0.51 40.08 2.85
21 22 1.952367 GCTCTAGGTGCAATGCAGGTT 60.952 52.381 8.73 0.00 40.08 3.50
22 23 0.393537 GCTCTAGGTGCAATGCAGGT 60.394 55.000 8.73 0.60 40.08 4.00
23 24 1.434622 CGCTCTAGGTGCAATGCAGG 61.435 60.000 8.73 0.00 40.08 4.85
24 25 1.434622 CCGCTCTAGGTGCAATGCAG 61.435 60.000 8.73 0.00 40.08 4.41
25 26 1.450134 CCGCTCTAGGTGCAATGCA 60.450 57.895 2.72 2.72 35.60 3.96
26 27 2.828128 GCCGCTCTAGGTGCAATGC 61.828 63.158 0.00 0.00 0.00 3.56
27 28 0.816825 ATGCCGCTCTAGGTGCAATG 60.817 55.000 0.00 0.00 37.27 2.82
28 29 0.816825 CATGCCGCTCTAGGTGCAAT 60.817 55.000 0.00 0.00 37.27 3.56
29 30 1.450134 CATGCCGCTCTAGGTGCAA 60.450 57.895 0.00 0.00 37.27 4.08
30 31 2.187685 CATGCCGCTCTAGGTGCA 59.812 61.111 8.82 4.65 38.23 4.57
31 32 2.388890 ATCCATGCCGCTCTAGGTGC 62.389 60.000 0.00 0.00 0.00 5.01
32 33 0.602106 CATCCATGCCGCTCTAGGTG 60.602 60.000 0.00 0.00 0.00 4.00
33 34 1.750930 CATCCATGCCGCTCTAGGT 59.249 57.895 0.00 0.00 0.00 3.08
34 35 4.689484 CATCCATGCCGCTCTAGG 57.311 61.111 0.00 0.00 0.00 3.02
44 45 1.656594 CATGTTGTTTGCGCATCCATG 59.343 47.619 12.75 14.83 0.00 3.66
45 46 1.545136 TCATGTTGTTTGCGCATCCAT 59.455 42.857 12.75 6.44 0.00 3.41
46 47 0.957362 TCATGTTGTTTGCGCATCCA 59.043 45.000 12.75 8.37 0.00 3.41
47 48 2.282701 ATCATGTTGTTTGCGCATCC 57.717 45.000 12.75 5.22 0.00 3.51
48 49 7.592533 AGATTATTATCATGTTGTTTGCGCATC 59.407 33.333 12.75 8.68 32.95 3.91
49 50 7.428020 AGATTATTATCATGTTGTTTGCGCAT 58.572 30.769 12.75 0.00 32.95 4.73
50 51 6.794374 AGATTATTATCATGTTGTTTGCGCA 58.206 32.000 5.66 5.66 32.95 6.09
51 52 7.096477 GGAAGATTATTATCATGTTGTTTGCGC 60.096 37.037 0.00 0.00 32.95 6.09
52 53 7.914871 TGGAAGATTATTATCATGTTGTTTGCG 59.085 33.333 0.00 0.00 32.95 4.85
53 54 9.585099 TTGGAAGATTATTATCATGTTGTTTGC 57.415 29.630 0.00 0.00 32.95 3.68
57 58 9.685276 TGACTTGGAAGATTATTATCATGTTGT 57.315 29.630 0.00 0.00 32.95 3.32
63 64 9.565090 CCAGAATGACTTGGAAGATTATTATCA 57.435 33.333 0.00 0.00 39.69 2.15
64 65 8.510505 GCCAGAATGACTTGGAAGATTATTATC 58.489 37.037 0.00 0.00 39.69 1.75
65 66 8.000709 TGCCAGAATGACTTGGAAGATTATTAT 58.999 33.333 0.00 0.00 39.69 1.28
66 67 7.345691 TGCCAGAATGACTTGGAAGATTATTA 58.654 34.615 0.00 0.00 39.69 0.98
67 68 6.189859 TGCCAGAATGACTTGGAAGATTATT 58.810 36.000 0.00 0.00 39.69 1.40
68 69 5.759059 TGCCAGAATGACTTGGAAGATTAT 58.241 37.500 0.00 0.00 39.69 1.28
69 70 5.045651 TCTGCCAGAATGACTTGGAAGATTA 60.046 40.000 0.00 0.00 39.69 1.75
70 71 4.015084 CTGCCAGAATGACTTGGAAGATT 58.985 43.478 0.00 0.00 39.69 2.40
71 72 3.265221 TCTGCCAGAATGACTTGGAAGAT 59.735 43.478 0.00 0.00 39.69 2.40
72 73 2.639347 TCTGCCAGAATGACTTGGAAGA 59.361 45.455 0.00 0.00 39.69 2.87
73 74 3.063510 TCTGCCAGAATGACTTGGAAG 57.936 47.619 0.00 0.00 39.69 3.46
74 75 3.349927 CATCTGCCAGAATGACTTGGAA 58.650 45.455 0.00 0.00 39.69 3.53
75 76 2.942752 GCATCTGCCAGAATGACTTGGA 60.943 50.000 0.00 0.00 39.69 3.53
76 77 1.404391 GCATCTGCCAGAATGACTTGG 59.596 52.381 0.00 0.00 39.69 3.61
77 78 1.063616 CGCATCTGCCAGAATGACTTG 59.936 52.381 0.00 0.00 37.91 3.16
78 79 1.376543 CGCATCTGCCAGAATGACTT 58.623 50.000 0.00 0.00 37.91 3.01
79 80 1.094073 GCGCATCTGCCAGAATGACT 61.094 55.000 0.30 0.00 37.91 3.41
80 81 1.354506 GCGCATCTGCCAGAATGAC 59.645 57.895 0.30 0.00 37.91 3.06
81 82 2.175621 CGCGCATCTGCCAGAATGA 61.176 57.895 8.75 0.00 37.91 2.57
82 83 2.326897 CGCGCATCTGCCAGAATG 59.673 61.111 8.75 0.00 37.91 2.67
83 84 3.580193 GCGCGCATCTGCCAGAAT 61.580 61.111 29.10 0.00 37.91 2.40
84 85 4.765449 AGCGCGCATCTGCCAGAA 62.765 61.111 35.10 0.00 37.91 3.02
90 91 2.816958 AACCAGAGCGCGCATCTG 60.817 61.111 34.13 34.13 43.15 2.90
91 92 2.816958 CAACCAGAGCGCGCATCT 60.817 61.111 35.10 27.43 0.00 2.90
92 93 2.568935 GAACAACCAGAGCGCGCATC 62.569 60.000 35.10 25.67 0.00 3.91
93 94 2.669569 AACAACCAGAGCGCGCAT 60.670 55.556 35.10 19.25 0.00 4.73
94 95 3.345808 GAACAACCAGAGCGCGCA 61.346 61.111 35.10 0.00 0.00 6.09
95 96 4.090057 GGAACAACCAGAGCGCGC 62.090 66.667 26.66 26.66 38.79 6.86
96 97 1.961277 AAGGAACAACCAGAGCGCG 60.961 57.895 0.00 0.00 42.04 6.86
97 98 1.576421 CAAGGAACAACCAGAGCGC 59.424 57.895 0.00 0.00 42.04 5.92
98 99 1.576421 GCAAGGAACAACCAGAGCG 59.424 57.895 0.00 0.00 42.04 5.03
99 100 1.576421 CGCAAGGAACAACCAGAGC 59.424 57.895 0.00 0.00 42.04 4.09
112 113 4.988598 ACAGGTCACCGCCGCAAG 62.989 66.667 0.00 0.00 0.00 4.01
113 114 4.555709 AACAGGTCACCGCCGCAA 62.556 61.111 0.00 0.00 0.00 4.85
114 115 4.555709 AAACAGGTCACCGCCGCA 62.556 61.111 0.00 0.00 0.00 5.69
115 116 4.025401 CAAACAGGTCACCGCCGC 62.025 66.667 0.00 0.00 0.00 6.53
116 117 2.280524 TCAAACAGGTCACCGCCG 60.281 61.111 0.00 0.00 0.00 6.46
117 118 0.321653 ATCTCAAACAGGTCACCGCC 60.322 55.000 0.00 0.00 0.00 6.13
118 119 0.798776 CATCTCAAACAGGTCACCGC 59.201 55.000 0.00 0.00 0.00 5.68
119 120 1.001974 TCCATCTCAAACAGGTCACCG 59.998 52.381 0.00 0.00 0.00 4.94
120 121 2.859165 TCCATCTCAAACAGGTCACC 57.141 50.000 0.00 0.00 0.00 4.02
121 122 3.012518 CCATCCATCTCAAACAGGTCAC 58.987 50.000 0.00 0.00 0.00 3.67
122 123 2.912295 TCCATCCATCTCAAACAGGTCA 59.088 45.455 0.00 0.00 0.00 4.02
123 124 3.054802 ACTCCATCCATCTCAAACAGGTC 60.055 47.826 0.00 0.00 0.00 3.85
124 125 2.915604 ACTCCATCCATCTCAAACAGGT 59.084 45.455 0.00 0.00 0.00 4.00
125 126 3.539604 GACTCCATCCATCTCAAACAGG 58.460 50.000 0.00 0.00 0.00 4.00
126 127 3.193263 CGACTCCATCCATCTCAAACAG 58.807 50.000 0.00 0.00 0.00 3.16
127 128 2.677902 GCGACTCCATCCATCTCAAACA 60.678 50.000 0.00 0.00 0.00 2.83
128 129 1.936547 GCGACTCCATCCATCTCAAAC 59.063 52.381 0.00 0.00 0.00 2.93
129 130 1.554617 TGCGACTCCATCCATCTCAAA 59.445 47.619 0.00 0.00 0.00 2.69
130 131 1.194218 TGCGACTCCATCCATCTCAA 58.806 50.000 0.00 0.00 0.00 3.02
131 132 1.194218 TTGCGACTCCATCCATCTCA 58.806 50.000 0.00 0.00 0.00 3.27
132 133 2.540265 ATTGCGACTCCATCCATCTC 57.460 50.000 0.00 0.00 0.00 2.75
133 134 2.968574 ACTATTGCGACTCCATCCATCT 59.031 45.455 0.00 0.00 0.00 2.90
134 135 3.393089 ACTATTGCGACTCCATCCATC 57.607 47.619 0.00 0.00 0.00 3.51
135 136 3.898123 AGTACTATTGCGACTCCATCCAT 59.102 43.478 0.00 0.00 0.00 3.41
136 137 3.296854 AGTACTATTGCGACTCCATCCA 58.703 45.455 0.00 0.00 0.00 3.41
137 138 4.323553 AAGTACTATTGCGACTCCATCC 57.676 45.455 0.00 0.00 0.00 3.51
138 139 7.948278 AAATAAGTACTATTGCGACTCCATC 57.052 36.000 0.00 0.00 30.24 3.51
139 140 7.441458 GGAAAATAAGTACTATTGCGACTCCAT 59.559 37.037 0.00 0.00 30.24 3.41
140 141 6.759827 GGAAAATAAGTACTATTGCGACTCCA 59.240 38.462 0.00 0.00 30.24 3.86
141 142 6.759827 TGGAAAATAAGTACTATTGCGACTCC 59.240 38.462 0.00 0.00 30.24 3.85
142 143 7.042658 CCTGGAAAATAAGTACTATTGCGACTC 60.043 40.741 0.00 0.00 30.24 3.36
143 144 6.761714 CCTGGAAAATAAGTACTATTGCGACT 59.238 38.462 0.00 0.00 30.24 4.18
144 145 6.759827 TCCTGGAAAATAAGTACTATTGCGAC 59.240 38.462 0.00 0.00 30.24 5.19
145 146 6.880484 TCCTGGAAAATAAGTACTATTGCGA 58.120 36.000 0.00 0.00 30.24 5.10
146 147 7.730364 ATCCTGGAAAATAAGTACTATTGCG 57.270 36.000 0.00 0.00 30.24 4.85
182 183 8.996024 AAACTTTCCTTCGAGATTTTGAAAAA 57.004 26.923 0.00 0.00 0.00 1.94
183 184 8.996024 AAAACTTTCCTTCGAGATTTTGAAAA 57.004 26.923 0.00 0.00 0.00 2.29
184 185 8.996024 AAAAACTTTCCTTCGAGATTTTGAAA 57.004 26.923 0.00 0.00 30.06 2.69
219 220 9.917129 CGTTACCCCTAAAGAAACAAAATATTT 57.083 29.630 0.00 0.00 0.00 1.40
220 221 8.525316 CCGTTACCCCTAAAGAAACAAAATATT 58.475 33.333 0.00 0.00 0.00 1.28
221 222 7.670979 ACCGTTACCCCTAAAGAAACAAAATAT 59.329 33.333 0.00 0.00 0.00 1.28
222 223 7.003482 ACCGTTACCCCTAAAGAAACAAAATA 58.997 34.615 0.00 0.00 0.00 1.40
223 224 5.834742 ACCGTTACCCCTAAAGAAACAAAAT 59.165 36.000 0.00 0.00 0.00 1.82
224 225 5.199723 ACCGTTACCCCTAAAGAAACAAAA 58.800 37.500 0.00 0.00 0.00 2.44
225 226 4.790937 ACCGTTACCCCTAAAGAAACAAA 58.209 39.130 0.00 0.00 0.00 2.83
226 227 4.436113 ACCGTTACCCCTAAAGAAACAA 57.564 40.909 0.00 0.00 0.00 2.83
227 228 4.837860 TCTACCGTTACCCCTAAAGAAACA 59.162 41.667 0.00 0.00 0.00 2.83
228 229 5.405935 TCTACCGTTACCCCTAAAGAAAC 57.594 43.478 0.00 0.00 0.00 2.78
229 230 6.625532 ATTCTACCGTTACCCCTAAAGAAA 57.374 37.500 0.00 0.00 0.00 2.52
230 231 7.919385 ATATTCTACCGTTACCCCTAAAGAA 57.081 36.000 0.00 0.00 0.00 2.52
231 232 7.919385 AATATTCTACCGTTACCCCTAAAGA 57.081 36.000 0.00 0.00 0.00 2.52
232 233 8.833493 CAAAATATTCTACCGTTACCCCTAAAG 58.167 37.037 0.00 0.00 0.00 1.85
233 234 8.328014 ACAAAATATTCTACCGTTACCCCTAAA 58.672 33.333 0.00 0.00 0.00 1.85
234 235 7.860584 ACAAAATATTCTACCGTTACCCCTAA 58.139 34.615 0.00 0.00 0.00 2.69
235 236 7.436320 ACAAAATATTCTACCGTTACCCCTA 57.564 36.000 0.00 0.00 0.00 3.53
236 237 6.317663 ACAAAATATTCTACCGTTACCCCT 57.682 37.500 0.00 0.00 0.00 4.79
237 238 7.047271 TGTACAAAATATTCTACCGTTACCCC 58.953 38.462 0.00 0.00 0.00 4.95
238 239 8.491331 TTGTACAAAATATTCTACCGTTACCC 57.509 34.615 5.64 0.00 0.00 3.69
262 263 5.437289 TCGCTGTCAACTCAATTTTGATT 57.563 34.783 0.00 0.00 35.47 2.57
271 272 1.550327 AGGAGATCGCTGTCAACTCA 58.450 50.000 0.00 0.00 0.00 3.41
272 273 2.165437 AGAAGGAGATCGCTGTCAACTC 59.835 50.000 0.00 0.00 0.00 3.01
282 283 1.270041 GCTTAGCCCAGAAGGAGATCG 60.270 57.143 0.00 0.00 38.24 3.69
306 307 4.262420 GGTTGGCCTTATTTCTTTGCAAGA 60.262 41.667 3.32 0.00 35.26 3.02
309 310 2.301583 GGGTTGGCCTTATTTCTTTGCA 59.698 45.455 3.32 0.00 34.45 4.08
327 328 1.303317 GATGGGCACTGAAACGGGT 60.303 57.895 0.00 0.00 0.00 5.28
347 348 4.738998 TCGGTTGGGCTGGCCATG 62.739 66.667 24.56 16.29 37.98 3.66
363 364 3.058914 GTGCACACAACATGTAGACCTTC 60.059 47.826 13.17 0.00 40.64 3.46
377 379 0.393944 TGGGTTTAACCGTGCACACA 60.394 50.000 18.64 0.00 39.83 3.72
503 523 1.824329 GGCGATCTCGTCTGGGAGA 60.824 63.158 1.14 0.00 46.37 3.71
509 529 1.459455 CCCAGATGGCGATCTCGTCT 61.459 60.000 8.44 0.00 45.41 4.18
650 670 3.259064 GCTTGGTAACTGACGCATTAGA 58.741 45.455 0.00 0.00 37.61 2.10
652 672 2.352388 GGCTTGGTAACTGACGCATTA 58.648 47.619 0.00 0.00 37.61 1.90
653 673 1.165270 GGCTTGGTAACTGACGCATT 58.835 50.000 0.00 0.00 37.61 3.56
656 676 1.666872 ACGGCTTGGTAACTGACGC 60.667 57.895 0.00 0.00 43.97 5.19
658 678 1.145803 GTCACGGCTTGGTAACTGAC 58.854 55.000 0.00 0.00 37.61 3.51
659 679 0.034337 GGTCACGGCTTGGTAACTGA 59.966 55.000 0.00 0.00 37.61 3.41
660 680 0.250124 TGGTCACGGCTTGGTAACTG 60.250 55.000 0.00 0.00 37.61 3.16
662 682 2.277084 CTATGGTCACGGCTTGGTAAC 58.723 52.381 0.00 0.00 0.00 2.50
664 684 1.563924 ACTATGGTCACGGCTTGGTA 58.436 50.000 0.00 0.00 0.00 3.25
665 685 0.690762 AACTATGGTCACGGCTTGGT 59.309 50.000 0.00 0.00 0.00 3.67
666 686 1.086696 CAACTATGGTCACGGCTTGG 58.913 55.000 0.00 0.00 0.00 3.61
668 688 2.851263 TTCAACTATGGTCACGGCTT 57.149 45.000 0.00 0.00 0.00 4.35
670 690 2.351726 GTGATTCAACTATGGTCACGGC 59.648 50.000 0.00 0.00 34.93 5.68
671 691 3.595173 TGTGATTCAACTATGGTCACGG 58.405 45.455 0.00 0.00 41.44 4.94
673 693 9.507280 CAAATTATGTGATTCAACTATGGTCAC 57.493 33.333 0.00 0.00 40.20 3.67
709 729 7.574779 GCCACCTCAACAATTGTTTTTCTTTTT 60.575 33.333 21.10 0.00 35.83 1.94
710 730 6.128035 GCCACCTCAACAATTGTTTTTCTTTT 60.128 34.615 21.10 0.00 35.83 2.27
711 731 5.353956 GCCACCTCAACAATTGTTTTTCTTT 59.646 36.000 21.10 1.52 35.83 2.52
712 732 4.875536 GCCACCTCAACAATTGTTTTTCTT 59.124 37.500 21.10 2.56 35.83 2.52
713 733 4.081198 TGCCACCTCAACAATTGTTTTTCT 60.081 37.500 21.10 0.00 35.83 2.52
714 734 4.033932 GTGCCACCTCAACAATTGTTTTTC 59.966 41.667 21.10 7.17 35.83 2.29
715 735 3.938334 GTGCCACCTCAACAATTGTTTTT 59.062 39.130 21.10 0.00 35.83 1.94
716 736 3.197549 AGTGCCACCTCAACAATTGTTTT 59.802 39.130 21.10 0.00 35.83 2.43
717 737 2.765699 AGTGCCACCTCAACAATTGTTT 59.234 40.909 21.10 4.21 35.83 2.83
718 738 2.387757 AGTGCCACCTCAACAATTGTT 58.612 42.857 18.13 18.13 39.12 2.83
719 739 2.071778 AGTGCCACCTCAACAATTGT 57.928 45.000 4.92 4.92 0.00 2.71
720 740 2.746269 CAAGTGCCACCTCAACAATTG 58.254 47.619 3.24 3.24 33.75 2.32
721 741 1.069049 GCAAGTGCCACCTCAACAATT 59.931 47.619 0.00 0.00 34.31 2.32
722 742 0.675633 GCAAGTGCCACCTCAACAAT 59.324 50.000 0.00 0.00 34.31 2.71
723 743 0.395586 AGCAAGTGCCACCTCAACAA 60.396 50.000 0.00 0.00 43.38 2.83
724 744 1.102809 CAGCAAGTGCCACCTCAACA 61.103 55.000 0.00 0.00 43.38 3.33
725 745 0.819259 TCAGCAAGTGCCACCTCAAC 60.819 55.000 0.00 0.00 43.38 3.18
726 746 0.535780 CTCAGCAAGTGCCACCTCAA 60.536 55.000 0.00 0.00 43.38 3.02
727 747 1.071987 CTCAGCAAGTGCCACCTCA 59.928 57.895 0.00 0.00 43.38 3.86
728 748 1.673665 CCTCAGCAAGTGCCACCTC 60.674 63.158 0.00 0.00 43.38 3.85
729 749 2.433446 CCTCAGCAAGTGCCACCT 59.567 61.111 0.00 0.00 43.38 4.00
730 750 2.113986 ACCTCAGCAAGTGCCACC 59.886 61.111 0.00 0.00 43.38 4.61
731 751 0.819259 TTCACCTCAGCAAGTGCCAC 60.819 55.000 0.00 0.00 43.38 5.01
732 752 0.111061 ATTCACCTCAGCAAGTGCCA 59.889 50.000 0.00 0.00 43.38 4.92
733 753 2.012673 CTATTCACCTCAGCAAGTGCC 58.987 52.381 0.00 0.00 43.38 5.01
734 754 2.675348 GTCTATTCACCTCAGCAAGTGC 59.325 50.000 0.00 0.00 42.49 4.40
735 755 3.931468 CAGTCTATTCACCTCAGCAAGTG 59.069 47.826 0.00 0.00 35.24 3.16
736 756 3.618507 GCAGTCTATTCACCTCAGCAAGT 60.619 47.826 0.00 0.00 0.00 3.16
737 757 2.935201 GCAGTCTATTCACCTCAGCAAG 59.065 50.000 0.00 0.00 0.00 4.01
738 758 2.302733 TGCAGTCTATTCACCTCAGCAA 59.697 45.455 0.00 0.00 0.00 3.91
739 759 1.901833 TGCAGTCTATTCACCTCAGCA 59.098 47.619 0.00 0.00 0.00 4.41
740 760 2.680312 TGCAGTCTATTCACCTCAGC 57.320 50.000 0.00 0.00 0.00 4.26
741 761 5.181009 TGAAATGCAGTCTATTCACCTCAG 58.819 41.667 0.00 0.00 0.00 3.35
742 762 5.164620 TGAAATGCAGTCTATTCACCTCA 57.835 39.130 0.00 0.00 0.00 3.86
743 763 5.877012 TCTTGAAATGCAGTCTATTCACCTC 59.123 40.000 0.00 0.00 31.96 3.85
744 764 5.809001 TCTTGAAATGCAGTCTATTCACCT 58.191 37.500 0.00 0.00 31.96 4.00
745 765 5.877012 TCTCTTGAAATGCAGTCTATTCACC 59.123 40.000 0.00 0.00 31.96 4.02
746 766 6.974932 TCTCTTGAAATGCAGTCTATTCAC 57.025 37.500 0.00 0.00 31.96 3.18
747 767 7.984422 TTTCTCTTGAAATGCAGTCTATTCA 57.016 32.000 0.00 0.00 37.27 2.57
760 780 8.609617 TCCTCACTATCCTATTTCTCTTGAAA 57.390 34.615 0.00 0.00 44.99 2.69
761 781 8.789767 ATCCTCACTATCCTATTTCTCTTGAA 57.210 34.615 0.00 0.00 0.00 2.69
762 782 8.007153 TGATCCTCACTATCCTATTTCTCTTGA 58.993 37.037 0.00 0.00 0.00 3.02
763 783 8.187913 TGATCCTCACTATCCTATTTCTCTTG 57.812 38.462 0.00 0.00 0.00 3.02
764 784 8.646900 GTTGATCCTCACTATCCTATTTCTCTT 58.353 37.037 0.00 0.00 0.00 2.85
765 785 8.010105 AGTTGATCCTCACTATCCTATTTCTCT 58.990 37.037 0.00 0.00 0.00 3.10
766 786 8.189119 AGTTGATCCTCACTATCCTATTTCTC 57.811 38.462 0.00 0.00 0.00 2.87
767 787 9.836179 ATAGTTGATCCTCACTATCCTATTTCT 57.164 33.333 4.29 0.00 0.00 2.52
782 802 7.479002 AGATGATGTCTAGGGATAGTTGATCCT 60.479 40.741 3.70 0.00 43.96 3.24
783 803 6.667414 AGATGATGTCTAGGGATAGTTGATCC 59.333 42.308 0.00 0.00 43.86 3.36
784 804 7.147915 GGAGATGATGTCTAGGGATAGTTGATC 60.148 44.444 0.00 0.00 37.29 2.92
785 805 6.667414 GGAGATGATGTCTAGGGATAGTTGAT 59.333 42.308 0.00 0.00 37.29 2.57
786 806 6.013379 GGAGATGATGTCTAGGGATAGTTGA 58.987 44.000 0.00 0.00 37.29 3.18
787 807 6.015918 AGGAGATGATGTCTAGGGATAGTTG 58.984 44.000 0.00 0.00 37.29 3.16
788 808 6.226272 AGGAGATGATGTCTAGGGATAGTT 57.774 41.667 0.00 0.00 37.29 2.24
789 809 5.876691 AGGAGATGATGTCTAGGGATAGT 57.123 43.478 0.00 0.00 37.29 2.12
790 810 5.356751 CGAAGGAGATGATGTCTAGGGATAG 59.643 48.000 0.00 0.00 37.29 2.08
791 811 5.014228 TCGAAGGAGATGATGTCTAGGGATA 59.986 44.000 0.00 0.00 37.29 2.59
792 812 4.085733 CGAAGGAGATGATGTCTAGGGAT 58.914 47.826 0.00 0.00 37.29 3.85
853 882 0.254462 TAGGACATGCCGCCAAATCA 59.746 50.000 0.00 0.00 43.43 2.57
867 896 0.977395 AAGCCACCAGACTGTAGGAC 59.023 55.000 13.10 5.92 0.00 3.85
982 1014 7.553760 TGAAAGCATTGACAGAGAAGCATATTA 59.446 33.333 0.00 0.00 0.00 0.98
984 1016 5.884232 TGAAAGCATTGACAGAGAAGCATAT 59.116 36.000 0.00 0.00 0.00 1.78
996 1028 2.094854 CCTGAAGCCTGAAAGCATTGAC 60.095 50.000 0.00 0.00 34.23 3.18
999 1031 0.893447 GCCTGAAGCCTGAAAGCATT 59.107 50.000 0.00 0.00 34.35 3.56
1086 1118 0.588252 CAACTTGTCTGCCAGGTTCG 59.412 55.000 0.00 0.00 41.03 3.95
1231 1278 3.302344 GCAGCTTTTTCCCCGGCA 61.302 61.111 0.00 0.00 0.00 5.69
1234 1281 0.819582 ATCATGCAGCTTTTTCCCCG 59.180 50.000 0.00 0.00 0.00 5.73
1246 1293 2.507339 TCGAGCACGATTATCATGCA 57.493 45.000 15.58 0.00 43.81 3.96
1261 1308 1.745653 TGACTCAGCTATGGTGTCGAG 59.254 52.381 0.00 0.00 34.94 4.04
1317 1364 5.793817 CCATCCATATCAAATAGGTCGACA 58.206 41.667 18.91 0.00 0.00 4.35
1332 1382 1.302752 GCCGAGCATGCCATCCATA 60.303 57.895 15.66 0.00 31.47 2.74
1430 1483 3.066291 ACGGCAATTCAATCTGGTACA 57.934 42.857 0.00 0.00 0.00 2.90
1433 1486 3.119990 CGTAAACGGCAATTCAATCTGGT 60.120 43.478 0.00 0.00 35.37 4.00
1505 1564 1.133790 CTTCCTTAGGTACGACCACCG 59.866 57.143 0.00 0.00 43.84 4.94
1707 1780 3.070018 CTCGCTCAACAACCTTCAGATT 58.930 45.455 0.00 0.00 0.00 2.40
1765 1840 2.509052 TCATACATACCGCAGCTCAC 57.491 50.000 0.00 0.00 0.00 3.51
1808 1885 6.369615 ACAATTTTATGCATCAACAAGAAGCC 59.630 34.615 0.19 0.00 40.14 4.35
1856 1962 4.507710 CCTTCATTCTGAAAGGTCATCGA 58.492 43.478 0.00 0.00 35.73 3.59
1857 1963 3.624861 CCCTTCATTCTGAAAGGTCATCG 59.375 47.826 6.02 0.00 35.73 3.84
1894 2000 6.484818 AATGACTTTGTAATTTTGGCATGC 57.515 33.333 9.90 9.90 0.00 4.06
1923 2029 6.764308 AGCTAGCACATATTTCAAACACAT 57.236 33.333 18.83 0.00 0.00 3.21
1944 2050 1.419387 AGAGACATGGGCCAGATTAGC 59.581 52.381 13.78 0.00 0.00 3.09
2025 2135 0.756903 ACGGGAGCAAACAGTGTACT 59.243 50.000 0.00 0.00 0.00 2.73
2026 2136 1.145803 GACGGGAGCAAACAGTGTAC 58.854 55.000 0.00 0.00 0.00 2.90
2027 2137 0.753867 TGACGGGAGCAAACAGTGTA 59.246 50.000 0.00 0.00 0.00 2.90
2028 2138 0.814010 GTGACGGGAGCAAACAGTGT 60.814 55.000 0.00 0.00 0.00 3.55
2029 2139 0.532862 AGTGACGGGAGCAAACAGTG 60.533 55.000 0.00 0.00 0.00 3.66
2030 2140 1.045407 TAGTGACGGGAGCAAACAGT 58.955 50.000 0.00 0.00 0.00 3.55
2031 2141 2.163818 TTAGTGACGGGAGCAAACAG 57.836 50.000 0.00 0.00 0.00 3.16
2032 2142 2.851263 ATTAGTGACGGGAGCAAACA 57.149 45.000 0.00 0.00 0.00 2.83
2033 2143 3.373130 GGTAATTAGTGACGGGAGCAAAC 59.627 47.826 0.00 0.00 0.00 2.93
2034 2144 3.008157 TGGTAATTAGTGACGGGAGCAAA 59.992 43.478 0.00 0.00 0.00 3.68
2035 2145 2.568062 TGGTAATTAGTGACGGGAGCAA 59.432 45.455 0.00 0.00 0.00 3.91
2036 2146 2.167693 CTGGTAATTAGTGACGGGAGCA 59.832 50.000 0.00 0.00 0.00 4.26
2037 2147 2.429610 TCTGGTAATTAGTGACGGGAGC 59.570 50.000 0.00 0.00 0.00 4.70
2038 2148 3.488721 CGTCTGGTAATTAGTGACGGGAG 60.489 52.174 18.92 1.51 44.29 4.30
2039 2149 2.424601 CGTCTGGTAATTAGTGACGGGA 59.575 50.000 18.92 0.00 44.29 5.14
2040 2150 2.424601 TCGTCTGGTAATTAGTGACGGG 59.575 50.000 22.89 7.46 46.82 5.28
2041 2151 3.770263 TCGTCTGGTAATTAGTGACGG 57.230 47.619 22.89 12.24 46.82 4.79
2043 2153 4.036027 TCGGATCGTCTGGTAATTAGTGAC 59.964 45.833 0.00 0.00 0.00 3.67
2044 2154 4.201657 TCGGATCGTCTGGTAATTAGTGA 58.798 43.478 0.00 0.00 0.00 3.41
2045 2155 4.563337 TCGGATCGTCTGGTAATTAGTG 57.437 45.455 0.00 0.00 0.00 2.74
2046 2156 5.587388 TTTCGGATCGTCTGGTAATTAGT 57.413 39.130 0.00 0.00 0.00 2.24
2047 2157 7.148787 GCTAATTTCGGATCGTCTGGTAATTAG 60.149 40.741 20.07 20.07 38.69 1.73
2048 2158 6.643770 GCTAATTTCGGATCGTCTGGTAATTA 59.356 38.462 0.00 0.00 0.00 1.40
2049 2159 5.465724 GCTAATTTCGGATCGTCTGGTAATT 59.534 40.000 0.00 0.00 0.00 1.40
2050 2160 4.989168 GCTAATTTCGGATCGTCTGGTAAT 59.011 41.667 0.00 0.00 0.00 1.89
2051 2161 4.365723 GCTAATTTCGGATCGTCTGGTAA 58.634 43.478 0.00 0.00 0.00 2.85
2052 2162 3.549423 CGCTAATTTCGGATCGTCTGGTA 60.549 47.826 0.00 0.00 0.00 3.25
2053 2163 2.798499 CGCTAATTTCGGATCGTCTGGT 60.798 50.000 0.00 0.00 0.00 4.00
2054 2164 1.787155 CGCTAATTTCGGATCGTCTGG 59.213 52.381 0.00 0.00 0.00 3.86
2064 2174 1.083489 TGGCAACTCCGCTAATTTCG 58.917 50.000 0.00 0.00 37.80 3.46
2065 2175 1.132453 GGTGGCAACTCCGCTAATTTC 59.868 52.381 0.00 0.00 44.77 2.17
2066 2176 1.173913 GGTGGCAACTCCGCTAATTT 58.826 50.000 0.00 0.00 44.77 1.82
2067 2177 2.868253 GGTGGCAACTCCGCTAATT 58.132 52.632 0.00 0.00 44.77 1.40
2068 2178 4.637771 GGTGGCAACTCCGCTAAT 57.362 55.556 0.00 0.00 44.77 1.73
2111 2221 0.690192 TTCTGGCGAACAAGGGATCA 59.310 50.000 0.00 0.00 0.00 2.92
2154 2264 4.373116 GTGGCGGTGGCGAGAAGA 62.373 66.667 0.00 0.00 41.24 2.87
2227 2337 0.028770 CAAGAAAAACGCCACGCTGA 59.971 50.000 0.00 0.00 0.00 4.26
2228 2338 0.028770 TCAAGAAAAACGCCACGCTG 59.971 50.000 0.00 0.00 0.00 5.18
2235 2345 2.904932 CGCTTCAGATCAAGAAAAACGC 59.095 45.455 0.00 0.00 0.00 4.84
2262 2372 2.609427 TCTGCCTGACTGCATGTATC 57.391 50.000 0.00 0.00 41.16 2.24
2273 2383 2.217038 AACCCGCTCTTCTGCCTGA 61.217 57.895 0.00 0.00 0.00 3.86
2307 2417 0.095245 CATGACGACGCACAACATCC 59.905 55.000 0.00 0.00 0.00 3.51
2318 2428 1.131126 CACAAAGCCATCCATGACGAC 59.869 52.381 0.00 0.00 0.00 4.34
2345 2455 0.106708 TGGATGAATACTGAGCCGGC 59.893 55.000 21.89 21.89 0.00 6.13
2391 2501 2.890766 ATGTCCACCGTCACCACCC 61.891 63.158 0.00 0.00 0.00 4.61
2392 2502 1.671054 CATGTCCACCGTCACCACC 60.671 63.158 0.00 0.00 0.00 4.61
2423 2533 3.959991 GAACTGGGCCGGAGCAGAC 62.960 68.421 21.81 4.02 42.56 3.51
2462 2572 4.292178 GGAGCAGATCCGCCTCCG 62.292 72.222 0.00 0.00 38.67 4.63
2507 2617 0.878086 GGCCAGTAGATCAGAAGCGC 60.878 60.000 0.00 0.00 0.00 5.92
2613 2723 3.389925 CGTAAGGACCAAACACCACTA 57.610 47.619 0.00 0.00 0.00 2.74
2639 2749 1.883084 GCTGTCGTAGGCCGGATTG 60.883 63.158 5.05 0.00 37.11 2.67
2664 2774 0.690192 TGACCACCACAATCCGATGT 59.310 50.000 0.00 0.00 0.00 3.06
2665 2775 1.086696 GTGACCACCACAATCCGATG 58.913 55.000 0.00 0.00 45.03 3.84
2666 2776 0.391130 CGTGACCACCACAATCCGAT 60.391 55.000 0.00 0.00 45.98 4.18
2667 2777 1.005512 CGTGACCACCACAATCCGA 60.006 57.895 0.00 0.00 45.98 4.55
2668 2778 2.032634 CCGTGACCACCACAATCCG 61.033 63.158 0.00 0.00 45.98 4.18
2669 2779 0.250553 TTCCGTGACCACCACAATCC 60.251 55.000 0.00 0.00 45.98 3.01
2670 2780 1.535462 CTTTCCGTGACCACCACAATC 59.465 52.381 0.00 0.00 45.98 2.67
2671 2781 1.604604 CTTTCCGTGACCACCACAAT 58.395 50.000 0.00 0.00 45.98 2.71
2672 2782 0.464735 CCTTTCCGTGACCACCACAA 60.465 55.000 0.00 0.00 45.98 3.33
2673 2783 1.147376 CCTTTCCGTGACCACCACA 59.853 57.895 0.00 0.00 45.98 4.17
2674 2784 0.883370 GACCTTTCCGTGACCACCAC 60.883 60.000 0.00 0.00 42.30 4.16
2675 2785 1.052124 AGACCTTTCCGTGACCACCA 61.052 55.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.