Multiple sequence alignment - TraesCS3A01G466200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G466200 chr3A 100.000 3354 0 0 1 3354 700216904 700213551 0.000000e+00 6194.0
1 TraesCS3A01G466200 chr3A 80.606 165 27 4 1021 1181 728320820 728320983 4.540000e-24 122.0
2 TraesCS3A01G466200 chr3A 81.667 120 20 2 2073 2191 509250699 509250581 7.660000e-17 99.0
3 TraesCS3A01G466200 chr3A 80.833 120 21 2 2073 2191 509376700 509376582 3.560000e-15 93.5
4 TraesCS3A01G466200 chr3B 94.540 2381 102 14 144 2512 754230222 754227858 0.000000e+00 3651.0
5 TraesCS3A01G466200 chr3B 85.879 694 66 18 2634 3327 754227326 754226665 0.000000e+00 710.0
6 TraesCS3A01G466200 chr3B 85.879 694 66 18 2634 3327 754281751 754282412 0.000000e+00 710.0
7 TraesCS3A01G466200 chr3B 85.185 108 16 0 1021 1128 805255604 805255711 9.840000e-21 111.0
8 TraesCS3A01G466200 chr3D 94.524 1735 69 11 941 2664 565819678 565821397 0.000000e+00 2654.0
9 TraesCS3A01G466200 chr3D 86.701 579 55 12 2779 3346 565821417 565821984 1.020000e-174 623.0
10 TraesCS3A01G466200 chr3D 92.933 283 18 2 387 668 565819204 565819485 8.660000e-111 411.0
11 TraesCS3A01G466200 chr3D 96.943 229 7 0 163 391 565818707 565818935 5.250000e-103 385.0
12 TraesCS3A01G466200 chr3D 86.590 261 31 3 606 865 21414391 21414648 5.480000e-73 285.0
13 TraesCS3A01G466200 chr3D 79.394 165 29 4 1021 1181 598161073 598161236 9.840000e-21 111.0
14 TraesCS3A01G466200 chr3D 85.047 107 14 2 1023 1128 598037283 598037388 1.270000e-19 108.0
15 TraesCS3A01G466200 chr3D 80.833 120 21 2 2073 2191 388312580 388312462 3.560000e-15 93.5
16 TraesCS3A01G466200 chr3D 80.000 120 22 2 2073 2191 388324825 388324707 1.660000e-13 87.9
17 TraesCS3A01G466200 chr1D 81.564 537 86 7 2818 3354 99816131 99815608 6.650000e-117 431.0
18 TraesCS3A01G466200 chr1D 87.739 261 29 2 606 865 100461845 100462103 5.440000e-78 302.0
19 TraesCS3A01G466200 chr4A 87.500 264 29 3 606 868 467684110 467683850 5.440000e-78 302.0
20 TraesCS3A01G466200 chr4A 86.415 265 31 4 608 871 286747588 286747848 5.480000e-73 285.0
21 TraesCS3A01G466200 chr6D 86.792 265 29 4 606 868 402325317 402325057 1.180000e-74 291.0
22 TraesCS3A01G466200 chr4D 87.500 248 29 2 606 852 428481818 428482064 5.480000e-73 285.0
23 TraesCS3A01G466200 chr4D 72.312 372 84 16 1847 2213 477912795 477913152 7.660000e-17 99.0
24 TraesCS3A01G466200 chr4D 96.875 32 0 1 79 109 450491910 450491879 6.000000e-03 52.8
25 TraesCS3A01G466200 chr2D 86.296 270 28 7 607 873 74147110 74146847 5.480000e-73 285.0
26 TraesCS3A01G466200 chr4B 85.502 269 35 3 600 867 71704679 71704414 9.170000e-71 278.0
27 TraesCS3A01G466200 chr4B 72.656 384 87 15 1834 2213 604140149 604140518 9.840000e-21 111.0
28 TraesCS3A01G466200 chr5D 84.138 145 19 4 1023 1165 34051855 34051713 1.620000e-28 137.0
29 TraesCS3A01G466200 chr5D 82.069 145 22 4 1023 1165 34061347 34061205 1.630000e-23 121.0
30 TraesCS3A01G466200 chr5A 81.333 150 21 7 1023 1169 22723977 22724122 7.600000e-22 115.0
31 TraesCS3A01G466200 chr6A 77.083 144 33 0 2079 2222 8867988 8867845 2.140000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G466200 chr3A 700213551 700216904 3353 True 6194.00 6194 100.00000 1 3354 1 chr3A.!!$R3 3353
1 TraesCS3A01G466200 chr3B 754226665 754230222 3557 True 2180.50 3651 90.20950 144 3327 2 chr3B.!!$R1 3183
2 TraesCS3A01G466200 chr3B 754281751 754282412 661 False 710.00 710 85.87900 2634 3327 1 chr3B.!!$F1 693
3 TraesCS3A01G466200 chr3D 565818707 565821984 3277 False 1018.25 2654 92.77525 163 3346 4 chr3D.!!$F4 3183
4 TraesCS3A01G466200 chr1D 99815608 99816131 523 True 431.00 431 81.56400 2818 3354 1 chr1D.!!$R1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.248990 CGGTTGCTTTGTGTGCATGT 60.249 50.0 0.0 0.0 40.34 3.21 F
470 747 0.321298 TCAAGGCCCGCTACTTCAAC 60.321 55.0 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1288 1598 0.666274 GTGTCGATGACAAGGCACGA 60.666 55.0 0.49 0.0 44.49 4.35 R
2452 2764 0.473755 AGACTGCACCATGTGAACCA 59.526 50.0 0.00 0.0 35.23 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.598759 TCTATCCCTTCTATACACAGAAACC 57.401 40.000 0.00 0.00 34.22 3.27
26 27 7.130099 TCTATCCCTTCTATACACAGAAACCA 58.870 38.462 0.00 0.00 34.22 3.67
27 28 5.677319 TCCCTTCTATACACAGAAACCAG 57.323 43.478 0.00 0.00 34.22 4.00
28 29 5.338632 TCCCTTCTATACACAGAAACCAGA 58.661 41.667 0.00 0.00 34.22 3.86
29 30 5.422331 TCCCTTCTATACACAGAAACCAGAG 59.578 44.000 0.00 0.00 34.22 3.35
30 31 5.187967 CCCTTCTATACACAGAAACCAGAGT 59.812 44.000 0.00 0.00 34.22 3.24
31 32 6.380274 CCCTTCTATACACAGAAACCAGAGTA 59.620 42.308 0.00 0.00 34.22 2.59
32 33 7.416890 CCCTTCTATACACAGAAACCAGAGTAG 60.417 44.444 0.00 0.00 34.22 2.57
33 34 7.122948 CCTTCTATACACAGAAACCAGAGTAGT 59.877 40.741 0.00 0.00 34.22 2.73
34 35 8.418597 TTCTATACACAGAAACCAGAGTAGTT 57.581 34.615 0.00 0.00 31.63 2.24
35 36 9.524496 TTCTATACACAGAAACCAGAGTAGTTA 57.476 33.333 0.00 0.00 31.63 2.24
36 37 8.954350 TCTATACACAGAAACCAGAGTAGTTAC 58.046 37.037 0.00 0.00 0.00 2.50
37 38 5.211174 ACACAGAAACCAGAGTAGTTACC 57.789 43.478 0.00 0.00 0.00 2.85
38 39 4.235360 CACAGAAACCAGAGTAGTTACCG 58.765 47.826 0.00 0.00 0.00 4.02
39 40 3.257624 ACAGAAACCAGAGTAGTTACCGG 59.742 47.826 0.00 0.00 0.00 5.28
40 41 3.257624 CAGAAACCAGAGTAGTTACCGGT 59.742 47.826 13.98 13.98 0.00 5.28
41 42 3.899980 AGAAACCAGAGTAGTTACCGGTT 59.100 43.478 15.04 0.00 38.35 4.44
42 43 3.672767 AACCAGAGTAGTTACCGGTTG 57.327 47.619 15.04 1.08 35.47 3.77
43 44 1.274447 ACCAGAGTAGTTACCGGTTGC 59.726 52.381 15.04 6.14 0.00 4.17
44 45 1.549170 CCAGAGTAGTTACCGGTTGCT 59.451 52.381 15.04 14.26 0.00 3.91
45 46 2.028385 CCAGAGTAGTTACCGGTTGCTT 60.028 50.000 15.04 0.00 0.00 3.91
46 47 3.556423 CCAGAGTAGTTACCGGTTGCTTT 60.556 47.826 15.04 0.00 0.00 3.51
47 48 3.432252 CAGAGTAGTTACCGGTTGCTTTG 59.568 47.826 15.04 5.65 0.00 2.77
48 49 3.070590 AGAGTAGTTACCGGTTGCTTTGT 59.929 43.478 15.04 0.00 0.00 2.83
49 50 3.135994 AGTAGTTACCGGTTGCTTTGTG 58.864 45.455 15.04 0.00 0.00 3.33
50 51 2.047002 AGTTACCGGTTGCTTTGTGT 57.953 45.000 15.04 0.00 0.00 3.72
51 52 1.673920 AGTTACCGGTTGCTTTGTGTG 59.326 47.619 15.04 0.00 0.00 3.82
52 53 0.382515 TTACCGGTTGCTTTGTGTGC 59.617 50.000 15.04 0.00 0.00 4.57
53 54 0.748367 TACCGGTTGCTTTGTGTGCA 60.748 50.000 15.04 0.00 38.80 4.57
54 55 1.363443 CCGGTTGCTTTGTGTGCAT 59.637 52.632 0.00 0.00 40.34 3.96
55 56 0.940519 CCGGTTGCTTTGTGTGCATG 60.941 55.000 0.00 0.00 40.34 4.06
56 57 0.248990 CGGTTGCTTTGTGTGCATGT 60.249 50.000 0.00 0.00 40.34 3.21
57 58 1.802136 CGGTTGCTTTGTGTGCATGTT 60.802 47.619 0.00 0.00 40.34 2.71
58 59 2.278854 GGTTGCTTTGTGTGCATGTTT 58.721 42.857 0.00 0.00 40.34 2.83
59 60 2.677337 GGTTGCTTTGTGTGCATGTTTT 59.323 40.909 0.00 0.00 40.34 2.43
60 61 3.126686 GGTTGCTTTGTGTGCATGTTTTT 59.873 39.130 0.00 0.00 40.34 1.94
61 62 4.331168 GGTTGCTTTGTGTGCATGTTTTTA 59.669 37.500 0.00 0.00 40.34 1.52
62 63 5.491973 GTTGCTTTGTGTGCATGTTTTTAG 58.508 37.500 0.00 0.00 40.34 1.85
63 64 4.753233 TGCTTTGTGTGCATGTTTTTAGT 58.247 34.783 0.00 0.00 35.31 2.24
64 65 5.174395 TGCTTTGTGTGCATGTTTTTAGTT 58.826 33.333 0.00 0.00 35.31 2.24
65 66 5.641209 TGCTTTGTGTGCATGTTTTTAGTTT 59.359 32.000 0.00 0.00 35.31 2.66
66 67 6.148480 TGCTTTGTGTGCATGTTTTTAGTTTT 59.852 30.769 0.00 0.00 35.31 2.43
67 68 7.331934 TGCTTTGTGTGCATGTTTTTAGTTTTA 59.668 29.630 0.00 0.00 35.31 1.52
68 69 8.171840 GCTTTGTGTGCATGTTTTTAGTTTTAA 58.828 29.630 0.00 0.00 0.00 1.52
71 72 8.764524 TGTGTGCATGTTTTTAGTTTTAAAGT 57.235 26.923 0.00 0.00 30.84 2.66
72 73 9.856488 TGTGTGCATGTTTTTAGTTTTAAAGTA 57.144 25.926 0.00 0.00 30.84 2.24
74 75 9.856488 TGTGCATGTTTTTAGTTTTAAAGTACA 57.144 25.926 0.00 0.00 33.54 2.90
76 77 9.856488 TGCATGTTTTTAGTTTTAAAGTACACA 57.144 25.926 0.00 0.00 32.67 3.72
122 123 9.995003 ATAGAAGAGAGCATAAGGATTTACAAG 57.005 33.333 0.00 0.00 0.00 3.16
123 124 8.083828 AGAAGAGAGCATAAGGATTTACAAGA 57.916 34.615 0.00 0.00 0.00 3.02
124 125 8.543774 AGAAGAGAGCATAAGGATTTACAAGAA 58.456 33.333 0.00 0.00 0.00 2.52
125 126 8.729805 AAGAGAGCATAAGGATTTACAAGAAG 57.270 34.615 0.00 0.00 0.00 2.85
126 127 6.765512 AGAGAGCATAAGGATTTACAAGAAGC 59.234 38.462 0.00 0.00 0.00 3.86
127 128 5.825151 AGAGCATAAGGATTTACAAGAAGCC 59.175 40.000 0.00 0.00 35.33 4.35
128 129 5.760131 AGCATAAGGATTTACAAGAAGCCT 58.240 37.500 0.00 0.00 46.80 4.58
129 130 6.900194 AGCATAAGGATTTACAAGAAGCCTA 58.100 36.000 0.00 0.00 44.22 3.93
130 131 6.995091 AGCATAAGGATTTACAAGAAGCCTAG 59.005 38.462 0.00 0.00 44.22 3.02
131 132 6.293680 GCATAAGGATTTACAAGAAGCCTAGC 60.294 42.308 0.00 0.00 44.22 3.42
132 133 3.798202 AGGATTTACAAGAAGCCTAGCG 58.202 45.455 0.00 0.00 43.24 4.26
133 134 3.451178 AGGATTTACAAGAAGCCTAGCGA 59.549 43.478 0.00 0.00 43.24 4.93
134 135 3.804873 GGATTTACAAGAAGCCTAGCGAG 59.195 47.826 0.00 0.00 32.42 5.03
135 136 3.955650 TTTACAAGAAGCCTAGCGAGT 57.044 42.857 0.00 0.00 0.00 4.18
136 137 3.955650 TTACAAGAAGCCTAGCGAGTT 57.044 42.857 0.00 0.00 0.00 3.01
137 138 2.086054 ACAAGAAGCCTAGCGAGTTG 57.914 50.000 0.00 0.00 0.00 3.16
138 139 0.723981 CAAGAAGCCTAGCGAGTTGC 59.276 55.000 0.00 0.00 46.98 4.17
316 320 1.435577 GTTTCAACTACGCCCGTCAT 58.564 50.000 0.00 0.00 0.00 3.06
369 373 1.544825 ATCAGACCACGTGACCCCTG 61.545 60.000 19.30 16.75 0.00 4.45
465 742 1.296715 CAAGTCAAGGCCCGCTACT 59.703 57.895 0.00 0.00 0.00 2.57
470 747 0.321298 TCAAGGCCCGCTACTTCAAC 60.321 55.000 0.00 0.00 0.00 3.18
483 760 1.228124 TTCAACCCTTGTCGCCCAG 60.228 57.895 0.00 0.00 0.00 4.45
598 875 7.967854 TCGAAATTTCCACATGTTGATGTAATC 59.032 33.333 12.54 0.00 41.12 1.75
622 901 4.457949 GCAAATCTCCCTTCGGTCTTTTTA 59.542 41.667 0.00 0.00 0.00 1.52
623 902 5.392057 GCAAATCTCCCTTCGGTCTTTTTAG 60.392 44.000 0.00 0.00 0.00 1.85
624 903 5.500546 AATCTCCCTTCGGTCTTTTTAGT 57.499 39.130 0.00 0.00 0.00 2.24
625 904 4.532314 TCTCCCTTCGGTCTTTTTAGTC 57.468 45.455 0.00 0.00 0.00 2.59
627 906 2.028748 TCCCTTCGGTCTTTTTAGTCCG 60.029 50.000 4.79 4.79 43.65 4.79
628 907 1.730612 CCTTCGGTCTTTTTAGTCCGC 59.269 52.381 6.06 0.00 42.28 5.54
629 908 1.389106 CTTCGGTCTTTTTAGTCCGCG 59.611 52.381 0.00 0.00 42.28 6.46
634 914 3.727723 CGGTCTTTTTAGTCCGCGTATAG 59.272 47.826 4.92 0.00 36.68 1.31
721 1001 8.929827 TCACAATGCCAAATCAATATTGTTAG 57.070 30.769 14.97 4.13 39.25 2.34
819 1099 6.876257 TGGTCAAACATTGCAAAGTTTAACTT 59.124 30.769 26.87 4.30 40.80 2.66
822 1102 7.897800 GTCAAACATTGCAAAGTTTAACTTGAC 59.102 33.333 26.87 24.61 38.66 3.18
854 1134 8.107095 TCTAATATGTGCAGTAAAAAGGACCTT 58.893 33.333 0.00 0.00 0.00 3.50
876 1160 6.183360 CCTTGGAGGGAGTATCTAACTTCTTC 60.183 46.154 0.00 0.00 38.77 2.87
877 1161 6.093617 TGGAGGGAGTATCTAACTTCTTCT 57.906 41.667 0.00 0.00 39.33 2.85
878 1162 6.503944 TGGAGGGAGTATCTAACTTCTTCTT 58.496 40.000 0.00 0.00 39.33 2.52
1006 1316 3.499737 GCTCCACAACGATGGCCG 61.500 66.667 0.00 0.00 39.85 6.13
1130 1440 2.113139 CACCACCTTCAACGCCCT 59.887 61.111 0.00 0.00 0.00 5.19
1221 1531 2.028190 ATCGGCAAGATCCTCGCG 59.972 61.111 0.00 0.00 33.45 5.87
1241 1551 0.839277 ATGAACGATGCCATGGAGGA 59.161 50.000 18.40 0.00 41.22 3.71
1624 1936 2.954318 CAGCAAATATCCCAACCCAGAG 59.046 50.000 0.00 0.00 0.00 3.35
1714 2026 4.856607 GAAGCGCTCGAGACCCCG 62.857 72.222 18.75 11.34 0.00 5.73
2314 2626 0.107654 CGAGGTTCATGGAAGGGGAC 60.108 60.000 0.00 0.00 0.00 4.46
2401 2713 2.431683 GGGTCAACTCAGCTGGCA 59.568 61.111 15.13 0.00 0.00 4.92
2441 2753 3.883489 TCACATACTGTCCCTATGAGTCG 59.117 47.826 0.00 0.00 0.00 4.18
2447 2759 4.597004 ACTGTCCCTATGAGTCGAAGTAA 58.403 43.478 0.00 0.00 0.00 2.24
2448 2760 5.202004 ACTGTCCCTATGAGTCGAAGTAAT 58.798 41.667 0.00 0.00 0.00 1.89
2449 2761 6.363065 ACTGTCCCTATGAGTCGAAGTAATA 58.637 40.000 0.00 0.00 0.00 0.98
2450 2762 6.262720 ACTGTCCCTATGAGTCGAAGTAATAC 59.737 42.308 0.00 0.00 0.00 1.89
2451 2763 6.124340 TGTCCCTATGAGTCGAAGTAATACA 58.876 40.000 0.00 0.00 0.00 2.29
2452 2764 6.776116 TGTCCCTATGAGTCGAAGTAATACAT 59.224 38.462 0.00 0.00 0.00 2.29
2453 2765 7.085116 GTCCCTATGAGTCGAAGTAATACATG 58.915 42.308 0.00 0.00 0.00 3.21
2454 2766 6.208797 TCCCTATGAGTCGAAGTAATACATGG 59.791 42.308 0.00 0.00 0.00 3.66
2455 2767 6.015350 CCCTATGAGTCGAAGTAATACATGGT 60.015 42.308 0.00 0.00 0.00 3.55
2456 2768 7.434492 CCTATGAGTCGAAGTAATACATGGTT 58.566 38.462 0.00 0.00 0.00 3.67
2457 2769 7.595502 CCTATGAGTCGAAGTAATACATGGTTC 59.404 40.741 0.00 0.00 0.00 3.62
2480 2792 0.249447 TGGTGCAGTCTGTCAGAACG 60.249 55.000 3.51 0.00 0.00 3.95
2481 2793 0.249489 GGTGCAGTCTGTCAGAACGT 60.249 55.000 3.51 0.00 0.00 3.99
2529 3093 8.826710 ACAATAATATTTGTACGTGATGGTCTG 58.173 33.333 0.00 0.00 38.04 3.51
2581 3148 7.840716 TCAAATTTGAATCACCTATTCTGGGAT 59.159 33.333 18.45 0.00 43.83 3.85
2595 3172 5.749422 TTCTGGGATGGAGGGAATAATTT 57.251 39.130 0.00 0.00 0.00 1.82
2596 3173 5.324832 TCTGGGATGGAGGGAATAATTTC 57.675 43.478 0.00 0.00 0.00 2.17
2597 3174 4.731416 TCTGGGATGGAGGGAATAATTTCA 59.269 41.667 0.00 0.00 33.23 2.69
2598 3175 5.376559 TCTGGGATGGAGGGAATAATTTCAT 59.623 40.000 0.00 0.00 33.23 2.57
2599 3176 6.566091 TCTGGGATGGAGGGAATAATTTCATA 59.434 38.462 0.00 0.00 33.23 2.15
2654 3424 9.303116 AGAGAGAGTACTTCTTTACTGATTTGA 57.697 33.333 0.00 0.00 35.87 2.69
2667 3437 9.334693 CTTTACTGATTTGACAAGCATAGTTTC 57.665 33.333 0.00 0.00 0.00 2.78
2677 3447 3.418684 AGCATAGTTTCGAAAGTGGGT 57.581 42.857 25.08 19.15 0.00 4.51
2694 3464 2.038426 TGGGTGTGGTGAGTGTTGATAG 59.962 50.000 0.00 0.00 0.00 2.08
2696 3466 3.244422 GGGTGTGGTGAGTGTTGATAGAA 60.244 47.826 0.00 0.00 0.00 2.10
2697 3467 3.746492 GGTGTGGTGAGTGTTGATAGAAC 59.254 47.826 0.00 0.00 0.00 3.01
2698 3468 4.377021 GTGTGGTGAGTGTTGATAGAACA 58.623 43.478 0.00 0.00 0.00 3.18
2699 3469 4.997395 GTGTGGTGAGTGTTGATAGAACAT 59.003 41.667 0.00 0.00 32.23 2.71
2700 3470 5.120830 GTGTGGTGAGTGTTGATAGAACATC 59.879 44.000 0.00 0.00 32.23 3.06
2701 3471 4.327357 GTGGTGAGTGTTGATAGAACATCG 59.673 45.833 0.00 0.00 32.23 3.84
2702 3472 4.021456 TGGTGAGTGTTGATAGAACATCGT 60.021 41.667 0.00 0.00 32.23 3.73
2728 3498 1.276421 ACTCATTCGTTGCTAGCACCT 59.724 47.619 19.17 0.00 0.00 4.00
2730 3500 1.275010 TCATTCGTTGCTAGCACCTGA 59.725 47.619 19.17 12.67 0.00 3.86
2736 3506 2.436417 GTTGCTAGCACCTGATCCAAA 58.564 47.619 19.17 0.00 0.00 3.28
2737 3507 2.408271 TGCTAGCACCTGATCCAAAG 57.592 50.000 14.93 0.00 0.00 2.77
2738 3508 1.630369 TGCTAGCACCTGATCCAAAGT 59.370 47.619 14.93 0.00 0.00 2.66
2739 3509 2.012673 GCTAGCACCTGATCCAAAGTG 58.987 52.381 10.63 0.00 0.00 3.16
2743 3513 1.901591 CACCTGATCCAAAGTGCACT 58.098 50.000 15.25 15.25 0.00 4.40
2744 3514 2.233271 CACCTGATCCAAAGTGCACTT 58.767 47.619 26.36 26.36 37.91 3.16
2745 3515 2.624838 CACCTGATCCAAAGTGCACTTT 59.375 45.455 33.85 33.85 46.23 2.66
2758 3528 3.936902 TGCACTTTCGTGTACTGTTTC 57.063 42.857 0.00 0.00 43.16 2.78
2913 3683 0.537188 ACCCCAAGAGCTACATGACG 59.463 55.000 0.00 0.00 0.00 4.35
2940 3710 0.179056 CCTGAATTACCCGCGGTGAT 60.179 55.000 26.12 11.86 36.19 3.06
2967 3737 3.100671 CACTACTAACCCCTCAAGAGCT 58.899 50.000 0.00 0.00 0.00 4.09
3026 3800 2.604914 CGTTGTCAATCCTTCGGATGAG 59.395 50.000 0.00 0.00 42.27 2.90
3034 3808 0.745845 CCTTCGGATGAGTTGGGCTG 60.746 60.000 0.00 0.00 0.00 4.85
3059 3833 2.430921 AGACGCGCCGTTGAAGAG 60.431 61.111 5.73 0.00 41.37 2.85
3079 3853 4.003648 GAGGATGTCATTTCGGTGTTTCT 58.996 43.478 0.00 0.00 0.00 2.52
3143 3922 2.698797 TCTTGTTCTCGTCCCTCAGTTT 59.301 45.455 0.00 0.00 0.00 2.66
3144 3923 3.134081 TCTTGTTCTCGTCCCTCAGTTTT 59.866 43.478 0.00 0.00 0.00 2.43
3159 3938 3.689161 TCAGTTTTTGTCTGACACACCAG 59.311 43.478 10.56 4.33 37.07 4.00
3174 3953 0.827925 ACCAGTCGAGCAAGGTCTCA 60.828 55.000 0.00 0.00 33.41 3.27
3179 3958 2.300152 AGTCGAGCAAGGTCTCATTGAA 59.700 45.455 0.00 0.00 33.41 2.69
3183 3962 3.416156 GAGCAAGGTCTCATTGAACCTT 58.584 45.455 19.20 19.20 42.72 3.50
3250 4029 1.140052 TCTCCTTCGCCAAGACACAAA 59.860 47.619 0.00 0.00 0.00 2.83
3283 4062 2.501723 TGGCTAATGGTCTCTTCACTCC 59.498 50.000 0.00 0.00 0.00 3.85
3348 4127 1.475034 GCAAGCCTATCGGATGTCCAA 60.475 52.381 0.00 0.00 35.14 3.53
3351 4130 1.837439 AGCCTATCGGATGTCCAACAA 59.163 47.619 0.00 0.00 35.14 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.789831 TGGTTTCTGTGTATAGAAGGGATAGAT 59.210 37.037 0.00 0.00 37.91 1.98
1 2 7.130099 TGGTTTCTGTGTATAGAAGGGATAGA 58.870 38.462 0.00 0.00 37.91 1.98
2 3 7.287927 TCTGGTTTCTGTGTATAGAAGGGATAG 59.712 40.741 0.00 0.00 37.91 2.08
3 4 7.130099 TCTGGTTTCTGTGTATAGAAGGGATA 58.870 38.462 0.00 0.00 37.91 2.59
4 5 5.964477 TCTGGTTTCTGTGTATAGAAGGGAT 59.036 40.000 0.00 0.00 37.91 3.85
5 6 5.338632 TCTGGTTTCTGTGTATAGAAGGGA 58.661 41.667 0.00 0.00 37.91 4.20
6 7 5.187967 ACTCTGGTTTCTGTGTATAGAAGGG 59.812 44.000 0.00 0.00 37.91 3.95
7 8 6.287589 ACTCTGGTTTCTGTGTATAGAAGG 57.712 41.667 0.00 0.00 37.91 3.46
8 9 8.057536 ACTACTCTGGTTTCTGTGTATAGAAG 57.942 38.462 0.00 0.00 37.91 2.85
9 10 8.418597 AACTACTCTGGTTTCTGTGTATAGAA 57.581 34.615 0.00 0.00 35.02 2.10
10 11 8.954350 GTAACTACTCTGGTTTCTGTGTATAGA 58.046 37.037 0.00 0.00 0.00 1.98
11 12 8.189460 GGTAACTACTCTGGTTTCTGTGTATAG 58.811 40.741 0.00 0.00 0.00 1.31
12 13 7.148188 CGGTAACTACTCTGGTTTCTGTGTATA 60.148 40.741 0.00 0.00 0.00 1.47
13 14 6.349944 CGGTAACTACTCTGGTTTCTGTGTAT 60.350 42.308 0.00 0.00 0.00 2.29
14 15 5.048504 CGGTAACTACTCTGGTTTCTGTGTA 60.049 44.000 0.00 0.00 0.00 2.90
15 16 4.261909 CGGTAACTACTCTGGTTTCTGTGT 60.262 45.833 0.00 0.00 0.00 3.72
16 17 4.235360 CGGTAACTACTCTGGTTTCTGTG 58.765 47.826 0.00 0.00 0.00 3.66
17 18 3.257624 CCGGTAACTACTCTGGTTTCTGT 59.742 47.826 0.00 0.00 0.00 3.41
18 19 3.257624 ACCGGTAACTACTCTGGTTTCTG 59.742 47.826 4.49 0.00 0.00 3.02
19 20 3.504375 ACCGGTAACTACTCTGGTTTCT 58.496 45.455 4.49 0.00 0.00 2.52
20 21 3.949842 ACCGGTAACTACTCTGGTTTC 57.050 47.619 4.49 0.00 0.00 2.78
21 22 3.804759 GCAACCGGTAACTACTCTGGTTT 60.805 47.826 8.00 0.00 35.55 3.27
22 23 2.289257 GCAACCGGTAACTACTCTGGTT 60.289 50.000 8.00 3.00 36.96 3.67
23 24 1.274447 GCAACCGGTAACTACTCTGGT 59.726 52.381 8.00 0.00 0.00 4.00
24 25 1.549170 AGCAACCGGTAACTACTCTGG 59.451 52.381 8.00 0.00 0.00 3.86
25 26 3.314541 AAGCAACCGGTAACTACTCTG 57.685 47.619 8.00 0.00 0.00 3.35
26 27 3.070590 ACAAAGCAACCGGTAACTACTCT 59.929 43.478 8.00 0.00 0.00 3.24
27 28 3.185797 CACAAAGCAACCGGTAACTACTC 59.814 47.826 8.00 0.00 0.00 2.59
28 29 3.135994 CACAAAGCAACCGGTAACTACT 58.864 45.455 8.00 0.00 0.00 2.57
29 30 2.874086 ACACAAAGCAACCGGTAACTAC 59.126 45.455 8.00 0.00 0.00 2.73
30 31 2.873472 CACACAAAGCAACCGGTAACTA 59.127 45.455 8.00 0.00 0.00 2.24
31 32 1.673920 CACACAAAGCAACCGGTAACT 59.326 47.619 8.00 5.27 0.00 2.24
32 33 1.862411 GCACACAAAGCAACCGGTAAC 60.862 52.381 8.00 2.29 0.00 2.50
33 34 0.382515 GCACACAAAGCAACCGGTAA 59.617 50.000 8.00 0.00 0.00 2.85
34 35 0.748367 TGCACACAAAGCAACCGGTA 60.748 50.000 8.00 0.00 39.39 4.02
35 36 1.391157 ATGCACACAAAGCAACCGGT 61.391 50.000 0.00 0.00 46.27 5.28
36 37 0.940519 CATGCACACAAAGCAACCGG 60.941 55.000 0.00 0.00 46.27 5.28
37 38 0.248990 ACATGCACACAAAGCAACCG 60.249 50.000 0.00 0.00 46.27 4.44
38 39 1.938625 AACATGCACACAAAGCAACC 58.061 45.000 0.00 0.00 46.27 3.77
39 40 4.339439 AAAAACATGCACACAAAGCAAC 57.661 36.364 0.00 0.00 46.27 4.17
40 41 5.174395 ACTAAAAACATGCACACAAAGCAA 58.826 33.333 0.00 0.00 46.27 3.91
42 43 5.717038 AACTAAAAACATGCACACAAAGC 57.283 34.783 0.00 0.00 0.00 3.51
45 46 9.209175 ACTTTAAAACTAAAAACATGCACACAA 57.791 25.926 0.00 0.00 0.00 3.33
46 47 8.764524 ACTTTAAAACTAAAAACATGCACACA 57.235 26.923 0.00 0.00 0.00 3.72
48 49 9.856488 TGTACTTTAAAACTAAAAACATGCACA 57.144 25.926 0.00 0.00 0.00 4.57
50 51 9.856488 TGTGTACTTTAAAACTAAAAACATGCA 57.144 25.926 0.00 0.00 0.00 3.96
96 97 9.995003 CTTGTAAATCCTTATGCTCTCTTCTAT 57.005 33.333 0.00 0.00 0.00 1.98
97 98 9.201989 TCTTGTAAATCCTTATGCTCTCTTCTA 57.798 33.333 0.00 0.00 0.00 2.10
98 99 8.083828 TCTTGTAAATCCTTATGCTCTCTTCT 57.916 34.615 0.00 0.00 0.00 2.85
99 100 8.723942 TTCTTGTAAATCCTTATGCTCTCTTC 57.276 34.615 0.00 0.00 0.00 2.87
100 101 7.281999 GCTTCTTGTAAATCCTTATGCTCTCTT 59.718 37.037 0.00 0.00 0.00 2.85
101 102 6.765512 GCTTCTTGTAAATCCTTATGCTCTCT 59.234 38.462 0.00 0.00 0.00 3.10
102 103 6.017523 GGCTTCTTGTAAATCCTTATGCTCTC 60.018 42.308 0.00 0.00 0.00 3.20
103 104 5.825151 GGCTTCTTGTAAATCCTTATGCTCT 59.175 40.000 0.00 0.00 0.00 4.09
104 105 5.825151 AGGCTTCTTGTAAATCCTTATGCTC 59.175 40.000 0.00 0.00 0.00 4.26
105 106 5.760131 AGGCTTCTTGTAAATCCTTATGCT 58.240 37.500 0.00 0.00 0.00 3.79
106 107 6.293680 GCTAGGCTTCTTGTAAATCCTTATGC 60.294 42.308 0.00 0.00 0.00 3.14
107 108 6.073548 CGCTAGGCTTCTTGTAAATCCTTATG 60.074 42.308 0.00 0.00 0.00 1.90
108 109 5.992217 CGCTAGGCTTCTTGTAAATCCTTAT 59.008 40.000 0.00 0.00 0.00 1.73
109 110 5.128171 TCGCTAGGCTTCTTGTAAATCCTTA 59.872 40.000 0.00 0.00 0.00 2.69
110 111 4.081087 TCGCTAGGCTTCTTGTAAATCCTT 60.081 41.667 0.00 0.00 0.00 3.36
111 112 3.451178 TCGCTAGGCTTCTTGTAAATCCT 59.549 43.478 0.00 0.00 0.00 3.24
112 113 3.793559 TCGCTAGGCTTCTTGTAAATCC 58.206 45.455 0.00 0.00 0.00 3.01
113 114 4.434520 ACTCGCTAGGCTTCTTGTAAATC 58.565 43.478 0.00 0.00 0.00 2.17
114 115 4.473477 ACTCGCTAGGCTTCTTGTAAAT 57.527 40.909 0.00 0.00 0.00 1.40
115 116 3.955650 ACTCGCTAGGCTTCTTGTAAA 57.044 42.857 0.00 0.00 0.00 2.01
116 117 3.585862 CAACTCGCTAGGCTTCTTGTAA 58.414 45.455 0.00 0.00 0.00 2.41
117 118 2.674177 GCAACTCGCTAGGCTTCTTGTA 60.674 50.000 0.00 0.00 37.77 2.41
118 119 1.941668 GCAACTCGCTAGGCTTCTTGT 60.942 52.381 0.00 0.00 37.77 3.16
119 120 0.723981 GCAACTCGCTAGGCTTCTTG 59.276 55.000 0.00 0.00 37.77 3.02
120 121 0.737715 CGCAACTCGCTAGGCTTCTT 60.738 55.000 0.00 0.00 39.08 2.52
121 122 1.153745 CGCAACTCGCTAGGCTTCT 60.154 57.895 0.00 0.00 39.08 2.85
122 123 0.736325 TTCGCAACTCGCTAGGCTTC 60.736 55.000 0.00 0.00 39.08 3.86
123 124 1.014564 GTTCGCAACTCGCTAGGCTT 61.015 55.000 0.00 0.00 39.08 4.35
124 125 1.446272 GTTCGCAACTCGCTAGGCT 60.446 57.895 0.00 0.00 39.08 4.58
125 126 1.289109 TTGTTCGCAACTCGCTAGGC 61.289 55.000 0.00 0.00 39.08 3.93
126 127 2.822306 TTGTTCGCAACTCGCTAGG 58.178 52.632 0.00 0.00 39.08 3.02
135 136 4.081642 AGAGAATAGCCTAGTTGTTCGCAA 60.082 41.667 7.18 0.00 34.21 4.85
136 137 3.447586 AGAGAATAGCCTAGTTGTTCGCA 59.552 43.478 7.18 0.00 0.00 5.10
137 138 4.045783 GAGAGAATAGCCTAGTTGTTCGC 58.954 47.826 0.00 0.00 0.00 4.70
138 139 5.038033 GTGAGAGAATAGCCTAGTTGTTCG 58.962 45.833 0.00 0.00 0.00 3.95
139 140 5.967088 TGTGAGAGAATAGCCTAGTTGTTC 58.033 41.667 0.00 0.00 0.00 3.18
140 141 6.360370 TTGTGAGAGAATAGCCTAGTTGTT 57.640 37.500 0.00 0.00 0.00 2.83
141 142 6.360370 TTTGTGAGAGAATAGCCTAGTTGT 57.640 37.500 0.00 0.00 0.00 3.32
142 143 6.183360 CGTTTTGTGAGAGAATAGCCTAGTTG 60.183 42.308 0.00 0.00 0.00 3.16
316 320 0.098200 GATCGTCGACGGTGATGTGA 59.902 55.000 35.05 15.74 40.29 3.58
465 742 1.228124 CTGGGCGACAAGGGTTGAA 60.228 57.895 0.00 0.00 0.00 2.69
470 747 1.971695 GTTTCCTGGGCGACAAGGG 60.972 63.158 13.25 0.00 0.00 3.95
483 760 5.441709 TTACAAGATTGGGTTTCGTTTCC 57.558 39.130 0.00 0.00 0.00 3.13
515 792 1.998315 CAAGGCTCTTGACTGACATCG 59.002 52.381 8.72 0.00 0.00 3.84
516 793 2.354259 CCAAGGCTCTTGACTGACATC 58.646 52.381 14.33 0.00 0.00 3.06
583 860 6.441093 AGATTTGCGATTACATCAACATGT 57.559 33.333 0.00 0.00 45.73 3.21
622 901 2.101415 GGGTAAAACCTATACGCGGACT 59.899 50.000 12.47 0.00 38.64 3.85
623 902 2.473816 GGGTAAAACCTATACGCGGAC 58.526 52.381 12.47 0.00 38.64 4.79
624 903 2.888834 GGGTAAAACCTATACGCGGA 57.111 50.000 12.47 0.00 38.64 5.54
681 961 5.856126 CATTGTGAATGCTGATGCTTTTT 57.144 34.783 0.00 0.00 40.48 1.94
795 1075 6.902224 AGTTAAACTTTGCAATGTTTGACC 57.098 33.333 35.93 27.21 40.35 4.02
837 1117 3.486383 CTCCAAGGTCCTTTTTACTGCA 58.514 45.455 0.00 0.00 0.00 4.41
848 1128 2.480642 AGATACTCCCTCCAAGGTCC 57.519 55.000 0.00 0.00 31.93 4.46
854 1134 6.093617 AGAAGAAGTTAGATACTCCCTCCA 57.906 41.667 0.00 0.00 35.54 3.86
876 1160 4.875561 TTTCGGGGTTTTTATTCCCAAG 57.124 40.909 2.64 0.00 45.06 3.61
877 1161 5.827326 AATTTCGGGGTTTTTATTCCCAA 57.173 34.783 2.64 0.00 45.06 4.12
878 1162 5.280062 GGAAATTTCGGGGTTTTTATTCCCA 60.280 40.000 11.95 0.00 45.06 4.37
969 1279 1.206831 GCTGAGTTTTTCGCCGGTC 59.793 57.895 1.90 0.00 0.00 4.79
1221 1531 1.202687 TCCTCCATGGCATCGTTCATC 60.203 52.381 6.96 0.00 35.26 2.92
1288 1598 0.666274 GTGTCGATGACAAGGCACGA 60.666 55.000 0.49 0.00 44.49 4.35
1296 1606 1.591703 GAGGCTGGTGTCGATGACA 59.408 57.895 0.00 0.00 40.50 3.58
1624 1936 1.817099 CAGGAGCCTGTTCGCCATC 60.817 63.158 8.38 0.00 39.10 3.51
1663 1975 2.606826 ACCCCCGAGGAGTTGTCC 60.607 66.667 0.00 0.00 44.33 4.02
1714 2026 4.292178 CGGATCGCCTCCAGCTCC 62.292 72.222 4.95 0.00 45.24 4.70
1822 2134 4.504916 CAGCTCCGGTCTGCCTCG 62.505 72.222 0.00 0.00 0.00 4.63
1828 2140 2.755876 TCGATGCAGCTCCGGTCT 60.756 61.111 0.00 0.00 0.00 3.85
2015 2327 3.541713 CCCCTCCGGCAGCTCTAC 61.542 72.222 0.00 0.00 0.00 2.59
2016 2328 3.618855 AACCCCTCCGGCAGCTCTA 62.619 63.158 0.00 0.00 33.26 2.43
2110 2422 4.351938 TGCGTCCAGAACCCGTCG 62.352 66.667 0.00 0.00 0.00 5.12
2112 2424 3.515316 CTGTGCGTCCAGAACCCGT 62.515 63.158 0.00 0.00 34.23 5.28
2351 2663 3.939740 AGCCTCCATTGCTTTGATCTA 57.060 42.857 0.00 0.00 34.87 1.98
2383 2695 2.360475 GCCAGCTGAGTTGACCCC 60.360 66.667 17.39 0.00 0.00 4.95
2401 2713 9.415008 AGTATGTGATCTATCAACTTGTCTACT 57.585 33.333 0.00 0.00 38.75 2.57
2451 2763 1.074405 AGACTGCACCATGTGAACCAT 59.926 47.619 0.00 0.00 35.23 3.55
2452 2764 0.473755 AGACTGCACCATGTGAACCA 59.526 50.000 0.00 0.00 35.23 3.67
2453 2765 0.877071 CAGACTGCACCATGTGAACC 59.123 55.000 0.00 0.00 35.23 3.62
2454 2766 1.532868 GACAGACTGCACCATGTGAAC 59.467 52.381 1.25 0.00 35.23 3.18
2455 2767 1.140652 TGACAGACTGCACCATGTGAA 59.859 47.619 1.25 0.00 35.23 3.18
2456 2768 0.758123 TGACAGACTGCACCATGTGA 59.242 50.000 1.25 0.00 35.23 3.58
2457 2769 1.154197 CTGACAGACTGCACCATGTG 58.846 55.000 1.25 0.00 36.51 3.21
2480 2792 1.671054 ATGCCGTAGCCACACACAC 60.671 57.895 0.00 0.00 38.69 3.82
2481 2793 1.670730 CATGCCGTAGCCACACACA 60.671 57.895 0.00 0.00 38.69 3.72
2529 3093 7.625481 CTAGTGAGGGACTAGCAGTCTTTGC 62.625 52.000 13.59 0.00 46.10 3.68
2542 3106 6.877611 TTCAAATTTGAACTAGTGAGGGAC 57.122 37.500 26.01 0.00 41.88 4.46
2555 3119 7.181361 TCCCAGAATAGGTGATTCAAATTTGA 58.819 34.615 16.91 16.91 45.69 2.69
2560 3127 5.193527 TCCATCCCAGAATAGGTGATTCAAA 59.806 40.000 0.53 0.00 45.69 2.69
2570 3137 6.649041 ATTATTCCCTCCATCCCAGAATAG 57.351 41.667 0.00 0.00 32.61 1.73
2578 3145 8.555729 AGATCTATGAAATTATTCCCTCCATCC 58.444 37.037 0.00 0.00 34.49 3.51
2654 3424 3.502211 CCCACTTTCGAAACTATGCTTGT 59.498 43.478 6.47 0.00 0.00 3.16
2667 3437 0.179056 ACTCACCACACCCACTTTCG 60.179 55.000 0.00 0.00 0.00 3.46
2677 3447 4.681074 TGTTCTATCAACACTCACCACA 57.319 40.909 0.00 0.00 0.00 4.17
2694 3464 3.304559 CGAATGAGTGGAGAACGATGTTC 59.695 47.826 1.49 1.49 0.00 3.18
2696 3466 2.231478 ACGAATGAGTGGAGAACGATGT 59.769 45.455 0.00 0.00 0.00 3.06
2697 3467 2.881074 ACGAATGAGTGGAGAACGATG 58.119 47.619 0.00 0.00 0.00 3.84
2698 3468 3.254060 CAACGAATGAGTGGAGAACGAT 58.746 45.455 0.00 0.00 0.00 3.73
2699 3469 2.672714 CAACGAATGAGTGGAGAACGA 58.327 47.619 0.00 0.00 0.00 3.85
2700 3470 1.126846 GCAACGAATGAGTGGAGAACG 59.873 52.381 0.00 0.00 0.00 3.95
2701 3471 2.417719 AGCAACGAATGAGTGGAGAAC 58.582 47.619 0.00 0.00 0.00 3.01
2702 3472 2.839486 AGCAACGAATGAGTGGAGAA 57.161 45.000 0.00 0.00 0.00 2.87
2728 3498 2.571212 ACGAAAGTGCACTTTGGATCA 58.429 42.857 42.36 0.00 45.37 2.92
2742 3512 4.573201 TGAAAGGGAAACAGTACACGAAAG 59.427 41.667 0.00 0.00 0.00 2.62
2743 3513 4.333372 GTGAAAGGGAAACAGTACACGAAA 59.667 41.667 0.00 0.00 0.00 3.46
2744 3514 3.872771 GTGAAAGGGAAACAGTACACGAA 59.127 43.478 0.00 0.00 0.00 3.85
2745 3515 3.133362 AGTGAAAGGGAAACAGTACACGA 59.867 43.478 0.00 0.00 33.18 4.35
2795 3565 9.479278 CTATAATGAATGATACGTACTCTCGTG 57.521 37.037 0.00 0.00 43.93 4.35
2913 3683 2.223994 GCGGGTAATTCAGGAGTAGTCC 60.224 54.545 8.73 8.73 44.33 3.85
2940 3710 0.416231 AGGGGTTAGTAGTGGAGGCA 59.584 55.000 0.00 0.00 0.00 4.75
2989 3763 0.253020 AACGAGGGAAGGGTATGGGT 60.253 55.000 0.00 0.00 0.00 4.51
3026 3800 0.107459 GTCTCCATCTCCAGCCCAAC 60.107 60.000 0.00 0.00 0.00 3.77
3034 3808 4.933064 CGGCGCGTCTCCATCTCC 62.933 72.222 9.90 0.00 0.00 3.71
3059 3833 5.175859 TCTAGAAACACCGAAATGACATCC 58.824 41.667 0.00 0.00 0.00 3.51
3079 3853 4.103153 CCTTCTAGGCATGTGGGAAATCTA 59.897 45.833 0.00 0.00 0.00 1.98
3113 3887 3.243336 GACGAGAACAAGAAGTACGCAT 58.757 45.455 0.00 0.00 0.00 4.73
3143 3922 1.478916 TCGACTGGTGTGTCAGACAAA 59.521 47.619 4.32 0.00 35.91 2.83
3144 3923 1.067060 CTCGACTGGTGTGTCAGACAA 59.933 52.381 4.32 0.00 35.91 3.18
3159 3938 2.370281 TCAATGAGACCTTGCTCGAC 57.630 50.000 0.00 0.00 37.73 4.20
3179 3958 3.708451 AGACCAAAGTTTGAACCAAGGT 58.292 40.909 17.33 4.21 31.83 3.50
3183 3962 3.702792 TGGAAGACCAAAGTTTGAACCA 58.297 40.909 17.33 13.91 43.91 3.67
3250 4029 6.787170 AGACCATTAGCCACATAATGATCAT 58.213 36.000 1.18 1.18 43.06 2.45
3283 4062 1.669115 CCTGCCTGTTCTGTGACCG 60.669 63.158 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.