Multiple sequence alignment - TraesCS3A01G466100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G466100 chr3A 100.000 2557 0 0 1 2557 700013185 700015741 0.000000e+00 4723.0
1 TraesCS3A01G466100 chr5A 99.285 1958 13 1 601 2557 444707279 444709236 0.000000e+00 3537.0
2 TraesCS3A01G466100 chr2B 99.081 1958 16 2 601 2557 175530608 175528652 0.000000e+00 3515.0
3 TraesCS3A01G466100 chr2A 99.030 1959 17 2 601 2557 757901031 757902989 0.000000e+00 3511.0
4 TraesCS3A01G466100 chr7B 98.979 1958 17 3 601 2557 653637455 653639410 0.000000e+00 3502.0
5 TraesCS3A01G466100 chr7B 98.876 1958 20 2 601 2557 746072504 746070548 0.000000e+00 3493.0
6 TraesCS3A01G466100 chr7B 98.774 1958 23 1 601 2557 653557635 653559592 0.000000e+00 3482.0
7 TraesCS3A01G466100 chr7B 85.714 91 13 0 194 284 702200907 702200817 2.090000e-16 97.1
8 TraesCS3A01G466100 chr4B 98.927 1958 18 3 601 2557 671141871 671139916 0.000000e+00 3496.0
9 TraesCS3A01G466100 chr4B 86.364 88 12 0 197 284 371008110 371008197 2.090000e-16 97.1
10 TraesCS3A01G466100 chr1A 98.827 1960 21 2 600 2557 461340054 461342013 0.000000e+00 3491.0
11 TraesCS3A01G466100 chr1A 86.364 88 12 0 197 284 305009046 305008959 2.090000e-16 97.1
12 TraesCS3A01G466100 chr6A 98.723 1958 21 4 601 2557 596621497 596623451 0.000000e+00 3474.0
13 TraesCS3A01G466100 chr6B 87.500 88 11 0 197 284 606386487 606386574 4.500000e-18 102.0
14 TraesCS3A01G466100 chr6B 85.714 91 13 0 194 284 123729064 123729154 2.090000e-16 97.1
15 TraesCS3A01G466100 chr6B 81.905 105 19 0 180 284 17103922 17104026 3.500000e-14 89.8
16 TraesCS3A01G466100 chrUn 83.810 105 17 0 180 284 311112829 311112933 1.620000e-17 100.0
17 TraesCS3A01G466100 chrUn 83.810 105 17 0 180 284 311308104 311308208 1.620000e-17 100.0
18 TraesCS3A01G466100 chrUn 83.810 105 17 0 180 284 475912954 475913058 1.620000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G466100 chr3A 700013185 700015741 2556 False 4723 4723 100.000 1 2557 1 chr3A.!!$F1 2556
1 TraesCS3A01G466100 chr5A 444707279 444709236 1957 False 3537 3537 99.285 601 2557 1 chr5A.!!$F1 1956
2 TraesCS3A01G466100 chr2B 175528652 175530608 1956 True 3515 3515 99.081 601 2557 1 chr2B.!!$R1 1956
3 TraesCS3A01G466100 chr2A 757901031 757902989 1958 False 3511 3511 99.030 601 2557 1 chr2A.!!$F1 1956
4 TraesCS3A01G466100 chr7B 653637455 653639410 1955 False 3502 3502 98.979 601 2557 1 chr7B.!!$F2 1956
5 TraesCS3A01G466100 chr7B 746070548 746072504 1956 True 3493 3493 98.876 601 2557 1 chr7B.!!$R2 1956
6 TraesCS3A01G466100 chr7B 653557635 653559592 1957 False 3482 3482 98.774 601 2557 1 chr7B.!!$F1 1956
7 TraesCS3A01G466100 chr4B 671139916 671141871 1955 True 3496 3496 98.927 601 2557 1 chr4B.!!$R1 1956
8 TraesCS3A01G466100 chr1A 461340054 461342013 1959 False 3491 3491 98.827 600 2557 1 chr1A.!!$F1 1957
9 TraesCS3A01G466100 chr6A 596621497 596623451 1954 False 3474 3474 98.723 601 2557 1 chr6A.!!$F1 1956

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.032815 GTGAGAGAAGCCCGGATAGC 59.967 60.0 0.73 0.0 0.00 2.97 F
472 473 0.038251 CATGCATGCCCATCATCTGC 60.038 55.0 14.93 0.0 31.79 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1556 3.025978 CCATCAAATTGCCCTGCTTCTA 58.974 45.455 0.0 0.0 0.0 2.10 R
2245 2250 5.756347 TCATAGAAGTTGTTGTTAGCACGTT 59.244 36.000 0.0 0.0 0.0 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.461119 AGAGAACCATGCCGGAGA 57.539 55.556 5.05 0.00 38.63 3.71
18 19 1.901085 AGAGAACCATGCCGGAGAC 59.099 57.895 5.05 0.00 38.63 3.36
19 20 0.904865 AGAGAACCATGCCGGAGACA 60.905 55.000 5.05 0.00 38.63 3.41
20 21 0.460987 GAGAACCATGCCGGAGACAG 60.461 60.000 5.05 0.00 38.63 3.51
21 22 2.045926 AACCATGCCGGAGACAGC 60.046 61.111 5.05 0.00 38.63 4.40
22 23 3.958147 AACCATGCCGGAGACAGCG 62.958 63.158 5.05 0.00 38.63 5.18
23 24 4.457496 CCATGCCGGAGACAGCGT 62.457 66.667 5.05 0.00 36.56 5.07
24 25 2.887568 CATGCCGGAGACAGCGTC 60.888 66.667 5.05 1.15 0.00 5.19
25 26 4.498520 ATGCCGGAGACAGCGTCG 62.499 66.667 5.05 0.00 37.67 5.12
28 29 4.778415 CCGGAGACAGCGTCGGTG 62.778 72.222 22.10 22.10 37.67 4.94
29 30 3.733960 CGGAGACAGCGTCGGTGA 61.734 66.667 29.52 0.00 37.67 4.02
30 31 2.179517 GGAGACAGCGTCGGTGAG 59.820 66.667 29.52 5.81 37.67 3.51
31 32 2.333417 GGAGACAGCGTCGGTGAGA 61.333 63.158 29.52 0.00 37.67 3.27
32 33 1.135731 GAGACAGCGTCGGTGAGAG 59.864 63.158 29.52 4.66 37.67 3.20
33 34 1.299562 GAGACAGCGTCGGTGAGAGA 61.300 60.000 29.52 0.00 37.67 3.10
34 35 0.889638 AGACAGCGTCGGTGAGAGAA 60.890 55.000 29.52 0.00 37.67 2.87
35 36 0.455295 GACAGCGTCGGTGAGAGAAG 60.455 60.000 29.52 2.75 34.87 2.85
36 37 1.803519 CAGCGTCGGTGAGAGAAGC 60.804 63.158 19.37 0.00 42.06 3.86
37 38 2.507324 GCGTCGGTGAGAGAAGCC 60.507 66.667 0.00 0.00 37.18 4.35
38 39 2.182030 CGTCGGTGAGAGAAGCCC 59.818 66.667 0.00 0.00 0.00 5.19
39 40 2.182030 GTCGGTGAGAGAAGCCCG 59.818 66.667 0.00 0.00 41.75 6.13
40 41 3.068691 TCGGTGAGAGAAGCCCGG 61.069 66.667 0.00 0.00 40.78 5.73
41 42 3.068691 CGGTGAGAGAAGCCCGGA 61.069 66.667 0.73 0.00 36.84 5.14
42 43 2.427245 CGGTGAGAGAAGCCCGGAT 61.427 63.158 0.73 0.00 36.84 4.18
43 44 1.107538 CGGTGAGAGAAGCCCGGATA 61.108 60.000 0.73 0.00 36.84 2.59
44 45 0.676736 GGTGAGAGAAGCCCGGATAG 59.323 60.000 0.73 0.00 0.00 2.08
45 46 0.032815 GTGAGAGAAGCCCGGATAGC 59.967 60.000 0.73 0.00 0.00 2.97
46 47 1.287503 GAGAGAAGCCCGGATAGCG 59.712 63.158 0.73 0.00 34.64 4.26
47 48 2.148558 GAGAGAAGCCCGGATAGCGG 62.149 65.000 0.73 0.00 34.64 5.52
48 49 2.123425 AGAAGCCCGGATAGCGGA 60.123 61.111 0.73 0.00 34.64 5.54
49 50 2.148558 GAGAAGCCCGGATAGCGGAG 62.149 65.000 0.73 0.00 34.64 4.63
50 51 2.123425 AAGCCCGGATAGCGGAGA 60.123 61.111 0.73 0.00 34.64 3.71
51 52 2.148558 GAAGCCCGGATAGCGGAGAG 62.149 65.000 0.73 0.00 34.64 3.20
52 53 2.597805 GCCCGGATAGCGGAGAGA 60.598 66.667 0.73 0.00 0.00 3.10
53 54 2.201022 GCCCGGATAGCGGAGAGAA 61.201 63.158 0.73 0.00 0.00 2.87
54 55 1.536943 GCCCGGATAGCGGAGAGAAT 61.537 60.000 0.73 0.00 0.00 2.40
55 56 0.528470 CCCGGATAGCGGAGAGAATC 59.472 60.000 0.73 0.00 0.00 2.52
56 57 0.169230 CCGGATAGCGGAGAGAATCG 59.831 60.000 0.00 0.00 42.67 3.34
64 65 1.777101 CGGAGAGAATCGCTTGATCC 58.223 55.000 0.00 0.00 42.67 3.36
65 66 1.339610 CGGAGAGAATCGCTTGATCCT 59.660 52.381 0.00 0.00 42.67 3.24
66 67 2.753296 GGAGAGAATCGCTTGATCCTG 58.247 52.381 0.00 0.00 42.67 3.86
67 68 2.363680 GGAGAGAATCGCTTGATCCTGA 59.636 50.000 0.00 0.00 42.67 3.86
68 69 3.552684 GGAGAGAATCGCTTGATCCTGAG 60.553 52.174 0.00 0.00 42.67 3.35
69 70 2.134346 GAGAATCGCTTGATCCTGAGC 58.866 52.381 0.00 0.00 35.58 4.26
73 74 4.116878 GCTTGATCCTGAGCGACC 57.883 61.111 0.00 0.00 0.00 4.79
74 75 1.522580 GCTTGATCCTGAGCGACCC 60.523 63.158 0.00 0.00 0.00 4.46
75 76 1.900351 CTTGATCCTGAGCGACCCA 59.100 57.895 0.00 0.00 0.00 4.51
76 77 0.179089 CTTGATCCTGAGCGACCCAG 60.179 60.000 0.00 0.00 0.00 4.45
77 78 0.614697 TTGATCCTGAGCGACCCAGA 60.615 55.000 0.00 0.00 33.65 3.86
78 79 1.323271 TGATCCTGAGCGACCCAGAC 61.323 60.000 0.00 0.00 33.65 3.51
79 80 1.305297 ATCCTGAGCGACCCAGACA 60.305 57.895 0.00 0.00 33.65 3.41
80 81 1.608717 ATCCTGAGCGACCCAGACAC 61.609 60.000 0.00 0.00 33.65 3.67
81 82 2.126307 CTGAGCGACCCAGACACG 60.126 66.667 0.00 0.00 33.65 4.49
82 83 3.633094 CTGAGCGACCCAGACACGG 62.633 68.421 0.00 0.00 33.65 4.94
83 84 3.681835 GAGCGACCCAGACACGGT 61.682 66.667 0.00 0.00 40.29 4.83
84 85 2.282674 AGCGACCCAGACACGGTA 60.283 61.111 0.00 0.00 36.06 4.02
85 86 2.126189 GCGACCCAGACACGGTAC 60.126 66.667 0.00 0.00 32.27 3.34
98 99 4.382320 GGTACGCCGGGTTGAGCA 62.382 66.667 2.18 0.00 0.00 4.26
99 100 3.116531 GTACGCCGGGTTGAGCAC 61.117 66.667 2.18 0.00 0.00 4.40
100 101 3.307906 TACGCCGGGTTGAGCACT 61.308 61.111 2.18 0.00 0.00 4.40
101 102 3.291101 TACGCCGGGTTGAGCACTC 62.291 63.158 2.18 0.00 0.00 3.51
102 103 4.379243 CGCCGGGTTGAGCACTCT 62.379 66.667 2.18 0.00 0.00 3.24
103 104 2.743928 GCCGGGTTGAGCACTCTG 60.744 66.667 2.18 0.00 0.00 3.35
104 105 3.059982 CCGGGTTGAGCACTCTGA 58.940 61.111 0.00 0.00 0.00 3.27
105 106 1.599047 CCGGGTTGAGCACTCTGAT 59.401 57.895 0.00 0.00 0.00 2.90
106 107 0.824109 CCGGGTTGAGCACTCTGATA 59.176 55.000 0.00 0.00 0.00 2.15
107 108 1.202463 CCGGGTTGAGCACTCTGATAG 60.202 57.143 0.00 0.00 0.00 2.08
108 109 1.202463 CGGGTTGAGCACTCTGATAGG 60.202 57.143 0.00 0.00 0.00 2.57
109 110 2.111384 GGGTTGAGCACTCTGATAGGA 58.889 52.381 0.00 0.00 0.00 2.94
110 111 2.102252 GGGTTGAGCACTCTGATAGGAG 59.898 54.545 0.00 0.00 39.09 3.69
111 112 2.482839 GGTTGAGCACTCTGATAGGAGC 60.483 54.545 0.00 0.00 36.87 4.70
112 113 1.028130 TGAGCACTCTGATAGGAGCG 58.972 55.000 0.00 0.00 36.87 5.03
113 114 0.318614 GAGCACTCTGATAGGAGCGC 60.319 60.000 0.00 0.00 40.45 5.92
114 115 1.300542 GCACTCTGATAGGAGCGCC 60.301 63.158 2.29 0.00 35.94 6.53
115 116 1.007964 CACTCTGATAGGAGCGCCG 60.008 63.158 2.29 0.00 39.96 6.46
116 117 2.196925 ACTCTGATAGGAGCGCCGG 61.197 63.158 2.29 0.00 39.96 6.13
117 118 3.565910 CTCTGATAGGAGCGCCGGC 62.566 68.421 19.07 19.07 39.96 6.13
134 135 2.664851 CGGCCGCTGTCTGTGAAA 60.665 61.111 14.67 0.00 0.00 2.69
135 136 2.671177 CGGCCGCTGTCTGTGAAAG 61.671 63.158 14.67 0.00 0.00 2.62
136 137 2.328099 GGCCGCTGTCTGTGAAAGG 61.328 63.158 0.00 0.00 0.00 3.11
137 138 1.301716 GCCGCTGTCTGTGAAAGGA 60.302 57.895 0.00 0.00 0.00 3.36
138 139 0.884704 GCCGCTGTCTGTGAAAGGAA 60.885 55.000 0.00 0.00 0.00 3.36
139 140 0.868406 CCGCTGTCTGTGAAAGGAAC 59.132 55.000 0.00 0.00 0.00 3.62
141 142 1.528586 CGCTGTCTGTGAAAGGAACTG 59.471 52.381 0.00 0.00 40.86 3.16
142 143 2.565841 GCTGTCTGTGAAAGGAACTGT 58.434 47.619 0.00 0.00 40.86 3.55
143 144 2.289002 GCTGTCTGTGAAAGGAACTGTG 59.711 50.000 0.00 0.00 40.86 3.66
144 145 2.288666 TGTCTGTGAAAGGAACTGTGC 58.711 47.619 0.00 0.00 40.86 4.57
145 146 1.261619 GTCTGTGAAAGGAACTGTGCG 59.738 52.381 0.00 0.00 40.86 5.34
146 147 0.588252 CTGTGAAAGGAACTGTGCGG 59.412 55.000 0.00 0.00 40.86 5.69
147 148 0.817634 TGTGAAAGGAACTGTGCGGG 60.818 55.000 0.00 0.00 40.86 6.13
148 149 1.228124 TGAAAGGAACTGTGCGGGG 60.228 57.895 0.00 0.00 40.86 5.73
149 150 2.597510 AAAGGAACTGTGCGGGGC 60.598 61.111 0.00 0.00 40.86 5.80
150 151 3.429372 AAAGGAACTGTGCGGGGCA 62.429 57.895 0.00 0.00 40.86 5.36
168 169 1.702886 CACGACAGTGTCTCATCCAC 58.297 55.000 20.64 0.00 43.15 4.02
169 170 0.241213 ACGACAGTGTCTCATCCACG 59.759 55.000 20.64 8.31 37.88 4.94
170 171 0.521735 CGACAGTGTCTCATCCACGA 59.478 55.000 20.64 0.00 37.88 4.35
171 172 1.068541 CGACAGTGTCTCATCCACGAA 60.069 52.381 20.64 0.00 37.88 3.85
172 173 2.607038 CGACAGTGTCTCATCCACGAAA 60.607 50.000 20.64 0.00 37.88 3.46
173 174 2.731976 GACAGTGTCTCATCCACGAAAC 59.268 50.000 16.26 0.00 37.88 2.78
174 175 2.069273 CAGTGTCTCATCCACGAAACC 58.931 52.381 0.00 0.00 37.88 3.27
175 176 1.002087 AGTGTCTCATCCACGAAACCC 59.998 52.381 0.00 0.00 37.88 4.11
176 177 1.002087 GTGTCTCATCCACGAAACCCT 59.998 52.381 0.00 0.00 0.00 4.34
177 178 1.275291 TGTCTCATCCACGAAACCCTC 59.725 52.381 0.00 0.00 0.00 4.30
189 190 3.477210 GAAACCCTCGAGATAATGGCT 57.523 47.619 15.71 0.00 0.00 4.75
190 191 2.918712 AACCCTCGAGATAATGGCTG 57.081 50.000 15.71 0.00 0.00 4.85
191 192 0.394565 ACCCTCGAGATAATGGCTGC 59.605 55.000 15.71 0.00 0.00 5.25
192 193 0.668706 CCCTCGAGATAATGGCTGCG 60.669 60.000 15.71 0.00 0.00 5.18
193 194 0.315251 CCTCGAGATAATGGCTGCGA 59.685 55.000 15.71 0.00 0.00 5.10
194 195 1.269778 CCTCGAGATAATGGCTGCGAA 60.270 52.381 15.71 0.00 0.00 4.70
195 196 2.057316 CTCGAGATAATGGCTGCGAAG 58.943 52.381 6.58 0.00 0.00 3.79
196 197 1.143305 CGAGATAATGGCTGCGAAGG 58.857 55.000 0.00 0.00 0.00 3.46
197 198 1.269778 CGAGATAATGGCTGCGAAGGA 60.270 52.381 0.00 0.00 0.00 3.36
225 226 2.882777 CTGCGCACGCCAGTAGAG 60.883 66.667 5.66 0.00 41.09 2.43
226 227 4.435436 TGCGCACGCCAGTAGAGG 62.435 66.667 5.66 0.00 41.09 3.69
227 228 4.436998 GCGCACGCCAGTAGAGGT 62.437 66.667 0.30 0.00 34.56 3.85
228 229 3.060020 GCGCACGCCAGTAGAGGTA 62.060 63.158 0.30 0.00 34.56 3.08
229 230 1.509463 CGCACGCCAGTAGAGGTAA 59.491 57.895 0.00 0.00 0.00 2.85
230 231 0.102481 CGCACGCCAGTAGAGGTAAT 59.898 55.000 0.00 0.00 0.00 1.89
231 232 1.470979 CGCACGCCAGTAGAGGTAATT 60.471 52.381 0.00 0.00 0.00 1.40
232 233 2.223641 CGCACGCCAGTAGAGGTAATTA 60.224 50.000 0.00 0.00 0.00 1.40
233 234 3.552273 CGCACGCCAGTAGAGGTAATTAT 60.552 47.826 0.00 0.00 0.00 1.28
234 235 3.988517 GCACGCCAGTAGAGGTAATTATC 59.011 47.826 0.00 0.00 0.00 1.75
235 236 4.500887 GCACGCCAGTAGAGGTAATTATCA 60.501 45.833 0.00 0.00 0.00 2.15
236 237 5.223382 CACGCCAGTAGAGGTAATTATCAG 58.777 45.833 0.00 0.00 0.00 2.90
237 238 4.238514 CGCCAGTAGAGGTAATTATCAGC 58.761 47.826 0.00 0.00 0.00 4.26
238 239 4.262036 CGCCAGTAGAGGTAATTATCAGCA 60.262 45.833 0.00 0.00 0.00 4.41
239 240 5.233988 GCCAGTAGAGGTAATTATCAGCAG 58.766 45.833 0.00 0.00 0.00 4.24
240 241 5.011125 GCCAGTAGAGGTAATTATCAGCAGA 59.989 44.000 0.00 0.00 0.00 4.26
241 242 6.451393 CCAGTAGAGGTAATTATCAGCAGAC 58.549 44.000 0.00 0.00 0.00 3.51
242 243 6.040955 CCAGTAGAGGTAATTATCAGCAGACA 59.959 42.308 0.00 0.00 0.00 3.41
243 244 7.417911 CCAGTAGAGGTAATTATCAGCAGACAA 60.418 40.741 0.00 0.00 0.00 3.18
244 245 7.436673 CAGTAGAGGTAATTATCAGCAGACAAC 59.563 40.741 0.00 0.00 0.00 3.32
245 246 6.552445 AGAGGTAATTATCAGCAGACAACT 57.448 37.500 0.00 0.00 0.00 3.16
246 247 6.951971 AGAGGTAATTATCAGCAGACAACTT 58.048 36.000 0.00 0.00 0.00 2.66
247 248 6.820656 AGAGGTAATTATCAGCAGACAACTTG 59.179 38.462 0.00 0.00 0.00 3.16
248 249 6.711277 AGGTAATTATCAGCAGACAACTTGA 58.289 36.000 0.00 0.00 0.00 3.02
249 250 6.595716 AGGTAATTATCAGCAGACAACTTGAC 59.404 38.462 0.00 0.00 0.00 3.18
250 251 5.536554 AATTATCAGCAGACAACTTGACG 57.463 39.130 0.00 0.00 0.00 4.35
251 252 1.800805 ATCAGCAGACAACTTGACGG 58.199 50.000 0.00 0.00 0.00 4.79
252 253 0.464036 TCAGCAGACAACTTGACGGT 59.536 50.000 0.00 0.00 0.00 4.83
253 254 0.583438 CAGCAGACAACTTGACGGTG 59.417 55.000 0.00 0.00 0.00 4.94
254 255 0.464036 AGCAGACAACTTGACGGTGA 59.536 50.000 0.00 0.00 0.00 4.02
255 256 0.861837 GCAGACAACTTGACGGTGAG 59.138 55.000 0.00 0.00 0.00 3.51
256 257 1.502231 CAGACAACTTGACGGTGAGG 58.498 55.000 0.00 0.00 0.00 3.86
257 258 1.068588 CAGACAACTTGACGGTGAGGA 59.931 52.381 0.00 0.00 0.00 3.71
258 259 1.341531 AGACAACTTGACGGTGAGGAG 59.658 52.381 0.00 0.00 0.00 3.69
259 260 1.340248 GACAACTTGACGGTGAGGAGA 59.660 52.381 0.00 0.00 0.00 3.71
260 261 1.971357 ACAACTTGACGGTGAGGAGAT 59.029 47.619 0.00 0.00 0.00 2.75
261 262 2.289072 ACAACTTGACGGTGAGGAGATG 60.289 50.000 0.00 0.00 0.00 2.90
262 263 1.924731 ACTTGACGGTGAGGAGATGA 58.075 50.000 0.00 0.00 0.00 2.92
263 264 1.546476 ACTTGACGGTGAGGAGATGAC 59.454 52.381 0.00 0.00 0.00 3.06
264 265 0.895530 TTGACGGTGAGGAGATGACC 59.104 55.000 0.00 0.00 0.00 4.02
269 270 1.187087 GGTGAGGAGATGACCGAAGT 58.813 55.000 0.00 0.00 34.73 3.01
270 271 1.134965 GGTGAGGAGATGACCGAAGTG 60.135 57.143 0.00 0.00 34.73 3.16
271 272 1.819288 GTGAGGAGATGACCGAAGTGA 59.181 52.381 0.00 0.00 34.73 3.41
272 273 2.231478 GTGAGGAGATGACCGAAGTGAA 59.769 50.000 0.00 0.00 34.73 3.18
273 274 2.897326 TGAGGAGATGACCGAAGTGAAA 59.103 45.455 0.00 0.00 34.73 2.69
274 275 3.254892 GAGGAGATGACCGAAGTGAAAC 58.745 50.000 0.00 0.00 34.73 2.78
275 276 1.993370 GGAGATGACCGAAGTGAAACG 59.007 52.381 0.00 0.00 45.86 3.60
281 282 4.424430 CGAAGTGAAACGGCGGCG 62.424 66.667 31.06 31.06 45.86 6.46
282 283 4.084888 GAAGTGAAACGGCGGCGG 62.085 66.667 35.05 17.25 45.86 6.13
308 309 4.007644 CCTCGACCACTGGCTGCA 62.008 66.667 0.50 0.00 0.00 4.41
309 310 2.267006 CTCGACCACTGGCTGCAT 59.733 61.111 0.50 0.00 0.00 3.96
310 311 2.046988 TCGACCACTGGCTGCATG 60.047 61.111 0.50 0.00 0.00 4.06
311 312 3.129502 CGACCACTGGCTGCATGG 61.130 66.667 13.40 13.40 39.57 3.66
312 313 2.352422 GACCACTGGCTGCATGGA 59.648 61.111 19.75 0.00 36.94 3.41
313 314 1.748122 GACCACTGGCTGCATGGAG 60.748 63.158 19.75 10.32 36.94 3.86
314 315 2.189191 GACCACTGGCTGCATGGAGA 62.189 60.000 19.59 0.00 36.94 3.71
315 316 1.748122 CCACTGGCTGCATGGAGAC 60.748 63.158 19.59 16.96 35.33 3.36
316 317 2.104859 CACTGGCTGCATGGAGACG 61.105 63.158 19.59 13.87 0.00 4.18
317 318 2.267006 CTGGCTGCATGGAGACGT 59.733 61.111 19.59 0.00 0.00 4.34
318 319 1.812922 CTGGCTGCATGGAGACGTC 60.813 63.158 19.59 7.70 0.00 4.34
319 320 2.265739 GGCTGCATGGAGACGTCA 59.734 61.111 19.59 0.00 0.00 4.35
320 321 1.375908 GGCTGCATGGAGACGTCAA 60.376 57.895 19.59 2.94 0.00 3.18
321 322 1.364626 GGCTGCATGGAGACGTCAAG 61.365 60.000 19.59 3.42 0.00 3.02
322 323 1.364626 GCTGCATGGAGACGTCAAGG 61.365 60.000 19.59 5.78 0.00 3.61
323 324 0.742281 CTGCATGGAGACGTCAAGGG 60.742 60.000 19.50 4.15 0.00 3.95
324 325 1.296715 GCATGGAGACGTCAAGGGT 59.703 57.895 19.50 0.00 0.00 4.34
325 326 0.535335 GCATGGAGACGTCAAGGGTA 59.465 55.000 19.50 0.00 0.00 3.69
326 327 1.471676 GCATGGAGACGTCAAGGGTAG 60.472 57.143 19.50 2.33 0.00 3.18
327 328 0.824759 ATGGAGACGTCAAGGGTAGC 59.175 55.000 19.50 0.00 0.00 3.58
328 329 1.255667 TGGAGACGTCAAGGGTAGCC 61.256 60.000 19.50 1.60 0.00 3.93
329 330 1.139095 GAGACGTCAAGGGTAGCCG 59.861 63.158 19.50 0.00 0.00 5.52
330 331 1.303888 AGACGTCAAGGGTAGCCGA 60.304 57.895 19.50 0.00 0.00 5.54
331 332 1.139095 GACGTCAAGGGTAGCCGAG 59.861 63.158 11.55 2.16 0.00 4.63
332 333 2.280823 GACGTCAAGGGTAGCCGAGG 62.281 65.000 11.55 6.19 0.00 4.63
333 334 2.187163 GTCAAGGGTAGCCGAGGC 59.813 66.667 5.89 5.89 42.33 4.70
334 335 2.284331 TCAAGGGTAGCCGAGGCA 60.284 61.111 17.18 0.00 44.88 4.75
335 336 2.187946 CAAGGGTAGCCGAGGCAG 59.812 66.667 17.18 0.00 44.88 4.85
336 337 2.284699 AAGGGTAGCCGAGGCAGT 60.285 61.111 17.18 0.00 44.88 4.40
337 338 1.001248 AAGGGTAGCCGAGGCAGTA 59.999 57.895 17.18 0.00 44.88 2.74
338 339 1.043673 AAGGGTAGCCGAGGCAGTAG 61.044 60.000 17.18 0.00 44.88 2.57
339 340 2.499827 GGGTAGCCGAGGCAGTAGG 61.500 68.421 17.18 0.00 44.88 3.18
340 341 1.455217 GGTAGCCGAGGCAGTAGGA 60.455 63.158 17.18 0.00 44.88 2.94
341 342 1.457009 GGTAGCCGAGGCAGTAGGAG 61.457 65.000 17.18 0.00 44.88 3.69
342 343 1.152735 TAGCCGAGGCAGTAGGAGG 60.153 63.158 17.18 0.00 44.88 4.30
343 344 1.934459 TAGCCGAGGCAGTAGGAGGT 61.934 60.000 17.18 0.00 44.88 3.85
344 345 1.455217 GCCGAGGCAGTAGGAGGTA 60.455 63.158 9.58 0.00 41.49 3.08
345 346 1.457009 GCCGAGGCAGTAGGAGGTAG 61.457 65.000 9.58 0.00 41.49 3.18
346 347 0.183014 CCGAGGCAGTAGGAGGTAGA 59.817 60.000 0.00 0.00 0.00 2.59
347 348 1.202952 CCGAGGCAGTAGGAGGTAGAT 60.203 57.143 0.00 0.00 0.00 1.98
348 349 1.883275 CGAGGCAGTAGGAGGTAGATG 59.117 57.143 0.00 0.00 0.00 2.90
349 350 2.243810 GAGGCAGTAGGAGGTAGATGG 58.756 57.143 0.00 0.00 0.00 3.51
350 351 1.133009 AGGCAGTAGGAGGTAGATGGG 60.133 57.143 0.00 0.00 0.00 4.00
351 352 1.133136 GGCAGTAGGAGGTAGATGGGA 60.133 57.143 0.00 0.00 0.00 4.37
352 353 2.679082 GCAGTAGGAGGTAGATGGGAA 58.321 52.381 0.00 0.00 0.00 3.97
353 354 3.039011 GCAGTAGGAGGTAGATGGGAAA 58.961 50.000 0.00 0.00 0.00 3.13
354 355 3.648545 GCAGTAGGAGGTAGATGGGAAAT 59.351 47.826 0.00 0.00 0.00 2.17
355 356 4.262678 GCAGTAGGAGGTAGATGGGAAATC 60.263 50.000 0.00 0.00 0.00 2.17
356 357 4.021894 CAGTAGGAGGTAGATGGGAAATCG 60.022 50.000 0.00 0.00 0.00 3.34
357 358 2.330216 AGGAGGTAGATGGGAAATCGG 58.670 52.381 0.00 0.00 0.00 4.18
358 359 1.348036 GGAGGTAGATGGGAAATCGGG 59.652 57.143 0.00 0.00 0.00 5.14
359 360 1.348036 GAGGTAGATGGGAAATCGGGG 59.652 57.143 0.00 0.00 0.00 5.73
360 361 1.061657 AGGTAGATGGGAAATCGGGGA 60.062 52.381 0.00 0.00 0.00 4.81
361 362 1.985895 GGTAGATGGGAAATCGGGGAT 59.014 52.381 0.00 0.00 0.00 3.85
362 363 2.027100 GGTAGATGGGAAATCGGGGATC 60.027 54.545 0.00 0.00 0.00 3.36
363 364 1.068121 AGATGGGAAATCGGGGATCC 58.932 55.000 1.92 1.92 0.00 3.36
373 374 4.899239 GGGGATCCGTCAGCTGCG 62.899 72.222 19.36 19.36 0.00 5.18
381 382 4.803426 GTCAGCTGCGGTCGAGGG 62.803 72.222 9.47 0.00 0.00 4.30
383 384 4.069232 CAGCTGCGGTCGAGGGAA 62.069 66.667 0.00 0.00 0.00 3.97
384 385 4.070552 AGCTGCGGTCGAGGGAAC 62.071 66.667 0.00 0.00 0.00 3.62
385 386 4.373116 GCTGCGGTCGAGGGAACA 62.373 66.667 0.00 0.00 0.00 3.18
386 387 2.342279 CTGCGGTCGAGGGAACAA 59.658 61.111 0.00 0.00 0.00 2.83
387 388 1.738099 CTGCGGTCGAGGGAACAAG 60.738 63.158 0.00 0.00 0.00 3.16
388 389 2.434359 GCGGTCGAGGGAACAAGG 60.434 66.667 0.00 0.00 0.00 3.61
389 390 2.264794 CGGTCGAGGGAACAAGGG 59.735 66.667 0.00 0.00 0.00 3.95
390 391 2.046217 GGTCGAGGGAACAAGGGC 60.046 66.667 0.00 0.00 0.00 5.19
391 392 2.046217 GTCGAGGGAACAAGGGCC 60.046 66.667 0.00 0.00 0.00 5.80
392 393 3.702048 TCGAGGGAACAAGGGCCG 61.702 66.667 0.00 0.00 0.00 6.13
393 394 3.702048 CGAGGGAACAAGGGCCGA 61.702 66.667 0.00 0.00 0.00 5.54
394 395 2.046217 GAGGGAACAAGGGCCGAC 60.046 66.667 0.00 0.00 0.00 4.79
395 396 3.952628 GAGGGAACAAGGGCCGACG 62.953 68.421 0.00 0.00 0.00 5.12
396 397 4.011517 GGGAACAAGGGCCGACGA 62.012 66.667 0.00 0.00 0.00 4.20
397 398 2.267961 GGAACAAGGGCCGACGAT 59.732 61.111 0.00 0.00 0.00 3.73
398 399 2.106683 GGAACAAGGGCCGACGATG 61.107 63.158 0.00 0.00 0.00 3.84
399 400 2.746277 AACAAGGGCCGACGATGC 60.746 61.111 0.00 0.00 0.00 3.91
405 406 4.875713 GGCCGACGATGCCCCATT 62.876 66.667 3.95 0.00 43.33 3.16
406 407 3.585990 GCCGACGATGCCCCATTG 61.586 66.667 0.00 0.00 0.00 2.82
407 408 2.124736 CCGACGATGCCCCATTGT 60.125 61.111 0.00 0.00 40.74 2.71
408 409 1.748879 CCGACGATGCCCCATTGTT 60.749 57.895 0.00 0.00 38.45 2.83
409 410 1.429021 CGACGATGCCCCATTGTTG 59.571 57.895 0.00 0.00 38.45 3.33
410 411 1.024046 CGACGATGCCCCATTGTTGA 61.024 55.000 6.91 0.00 40.39 3.18
411 412 1.392589 GACGATGCCCCATTGTTGAT 58.607 50.000 0.00 0.00 38.45 2.57
412 413 1.066002 GACGATGCCCCATTGTTGATG 59.934 52.381 0.00 0.00 38.45 3.07
413 414 1.105457 CGATGCCCCATTGTTGATGT 58.895 50.000 0.00 0.00 33.71 3.06
414 415 2.296792 CGATGCCCCATTGTTGATGTA 58.703 47.619 0.00 0.00 33.71 2.29
415 416 2.291465 CGATGCCCCATTGTTGATGTAG 59.709 50.000 0.00 0.00 33.71 2.74
416 417 2.142356 TGCCCCATTGTTGATGTAGG 57.858 50.000 0.00 0.00 33.71 3.18
417 418 1.357420 TGCCCCATTGTTGATGTAGGT 59.643 47.619 0.00 0.00 33.71 3.08
418 419 2.024414 GCCCCATTGTTGATGTAGGTC 58.976 52.381 0.00 0.00 33.71 3.85
419 420 2.288666 CCCCATTGTTGATGTAGGTCG 58.711 52.381 0.00 0.00 33.71 4.79
420 421 2.093181 CCCCATTGTTGATGTAGGTCGA 60.093 50.000 0.00 0.00 33.71 4.20
421 422 3.605634 CCCATTGTTGATGTAGGTCGAA 58.394 45.455 0.00 0.00 33.71 3.71
422 423 3.623060 CCCATTGTTGATGTAGGTCGAAG 59.377 47.826 0.00 0.00 33.71 3.79
423 424 4.253685 CCATTGTTGATGTAGGTCGAAGT 58.746 43.478 0.00 0.00 33.71 3.01
424 425 5.416083 CCATTGTTGATGTAGGTCGAAGTA 58.584 41.667 0.00 0.00 33.71 2.24
425 426 5.520288 CCATTGTTGATGTAGGTCGAAGTAG 59.480 44.000 0.00 0.00 33.71 2.57
426 427 4.106029 TGTTGATGTAGGTCGAAGTAGC 57.894 45.455 0.00 0.00 0.00 3.58
427 428 3.508402 TGTTGATGTAGGTCGAAGTAGCA 59.492 43.478 0.00 0.00 0.00 3.49
428 429 4.106197 GTTGATGTAGGTCGAAGTAGCAG 58.894 47.826 0.00 0.00 0.00 4.24
429 430 2.688446 TGATGTAGGTCGAAGTAGCAGG 59.312 50.000 0.00 0.00 0.00 4.85
430 431 2.502142 TGTAGGTCGAAGTAGCAGGA 57.498 50.000 0.00 0.00 0.00 3.86
431 432 2.366533 TGTAGGTCGAAGTAGCAGGAG 58.633 52.381 0.00 0.00 0.00 3.69
432 433 1.065851 GTAGGTCGAAGTAGCAGGAGC 59.934 57.143 0.00 0.00 42.56 4.70
433 434 0.612174 AGGTCGAAGTAGCAGGAGCA 60.612 55.000 0.00 0.00 45.49 4.26
434 435 0.179124 GGTCGAAGTAGCAGGAGCAG 60.179 60.000 0.00 0.00 45.49 4.24
435 436 0.528470 GTCGAAGTAGCAGGAGCAGT 59.472 55.000 0.00 0.00 45.49 4.40
436 437 1.067495 GTCGAAGTAGCAGGAGCAGTT 60.067 52.381 0.00 0.00 45.49 3.16
437 438 1.067565 TCGAAGTAGCAGGAGCAGTTG 60.068 52.381 0.00 0.00 45.49 3.16
438 439 1.337260 CGAAGTAGCAGGAGCAGTTGT 60.337 52.381 0.00 0.00 45.49 3.32
439 440 2.072298 GAAGTAGCAGGAGCAGTTGTG 58.928 52.381 0.00 0.00 45.49 3.33
440 441 1.051812 AGTAGCAGGAGCAGTTGTGT 58.948 50.000 0.00 0.00 45.49 3.72
441 442 1.417890 AGTAGCAGGAGCAGTTGTGTT 59.582 47.619 0.00 0.00 45.49 3.32
442 443 1.532868 GTAGCAGGAGCAGTTGTGTTG 59.467 52.381 0.00 0.00 45.49 3.33
443 444 0.820891 AGCAGGAGCAGTTGTGTTGG 60.821 55.000 0.00 0.00 45.49 3.77
444 445 0.819259 GCAGGAGCAGTTGTGTTGGA 60.819 55.000 0.00 0.00 41.58 3.53
445 446 1.233019 CAGGAGCAGTTGTGTTGGAG 58.767 55.000 0.00 0.00 0.00 3.86
446 447 0.839946 AGGAGCAGTTGTGTTGGAGT 59.160 50.000 0.00 0.00 0.00 3.85
447 448 2.047061 AGGAGCAGTTGTGTTGGAGTA 58.953 47.619 0.00 0.00 0.00 2.59
448 449 2.037772 AGGAGCAGTTGTGTTGGAGTAG 59.962 50.000 0.00 0.00 0.00 2.57
449 450 2.037251 GGAGCAGTTGTGTTGGAGTAGA 59.963 50.000 0.00 0.00 0.00 2.59
450 451 3.060602 GAGCAGTTGTGTTGGAGTAGAC 58.939 50.000 0.00 0.00 0.00 2.59
451 452 1.792949 GCAGTTGTGTTGGAGTAGACG 59.207 52.381 0.00 0.00 0.00 4.18
452 453 1.792949 CAGTTGTGTTGGAGTAGACGC 59.207 52.381 0.00 0.00 0.00 5.19
453 454 1.145803 GTTGTGTTGGAGTAGACGCC 58.854 55.000 0.00 0.00 36.28 5.68
454 455 0.753867 TTGTGTTGGAGTAGACGCCA 59.246 50.000 0.45 0.45 44.12 5.69
455 456 0.973632 TGTGTTGGAGTAGACGCCAT 59.026 50.000 5.94 0.00 45.12 4.40
456 457 1.337728 TGTGTTGGAGTAGACGCCATG 60.338 52.381 5.94 0.00 45.12 3.66
457 458 0.391130 TGTTGGAGTAGACGCCATGC 60.391 55.000 5.94 3.74 45.12 4.06
458 459 0.391130 GTTGGAGTAGACGCCATGCA 60.391 55.000 5.94 0.00 45.12 3.96
459 460 0.541392 TTGGAGTAGACGCCATGCAT 59.459 50.000 5.94 0.00 45.12 3.96
460 461 0.179076 TGGAGTAGACGCCATGCATG 60.179 55.000 20.19 20.19 40.94 4.06
461 462 1.502163 GGAGTAGACGCCATGCATGC 61.502 60.000 21.69 11.82 35.76 4.06
462 463 1.502163 GAGTAGACGCCATGCATGCC 61.502 60.000 21.69 9.72 0.00 4.40
463 464 2.203195 TAGACGCCATGCATGCCC 60.203 61.111 21.69 12.71 0.00 5.36
464 465 3.041469 TAGACGCCATGCATGCCCA 62.041 57.895 21.69 0.00 0.00 5.36
465 466 2.342073 TAGACGCCATGCATGCCCAT 62.342 55.000 21.69 5.94 0.00 4.00
466 467 3.203546 GACGCCATGCATGCCCATC 62.204 63.158 21.69 11.29 0.00 3.51
467 468 3.220658 CGCCATGCATGCCCATCA 61.221 61.111 21.69 0.00 0.00 3.07
468 469 2.570284 CGCCATGCATGCCCATCAT 61.570 57.895 21.69 0.00 35.31 2.45
469 470 1.292223 GCCATGCATGCCCATCATC 59.708 57.895 21.69 0.00 31.79 2.92
470 471 1.185618 GCCATGCATGCCCATCATCT 61.186 55.000 21.69 0.00 31.79 2.90
471 472 0.603065 CCATGCATGCCCATCATCTG 59.397 55.000 21.69 0.00 31.79 2.90
472 473 0.038251 CATGCATGCCCATCATCTGC 60.038 55.000 14.93 0.00 31.79 4.26
473 474 0.178961 ATGCATGCCCATCATCTGCT 60.179 50.000 16.68 0.00 33.12 4.24
474 475 1.106944 TGCATGCCCATCATCTGCTG 61.107 55.000 16.68 0.00 33.12 4.41
475 476 0.822121 GCATGCCCATCATCTGCTGA 60.822 55.000 6.36 0.00 38.53 4.26
476 477 1.911057 CATGCCCATCATCTGCTGAT 58.089 50.000 0.00 0.00 45.78 2.90
488 489 3.548745 TCTGCTGATGGAAGTATGTGG 57.451 47.619 0.00 0.00 0.00 4.17
489 490 2.171237 TCTGCTGATGGAAGTATGTGGG 59.829 50.000 0.00 0.00 0.00 4.61
490 491 1.915489 TGCTGATGGAAGTATGTGGGT 59.085 47.619 0.00 0.00 0.00 4.51
491 492 2.292267 GCTGATGGAAGTATGTGGGTG 58.708 52.381 0.00 0.00 0.00 4.61
492 493 2.292267 CTGATGGAAGTATGTGGGTGC 58.708 52.381 0.00 0.00 0.00 5.01
493 494 1.632920 TGATGGAAGTATGTGGGTGCA 59.367 47.619 0.00 0.00 0.00 4.57
494 495 2.292267 GATGGAAGTATGTGGGTGCAG 58.708 52.381 0.00 0.00 0.00 4.41
495 496 0.322456 TGGAAGTATGTGGGTGCAGC 60.322 55.000 7.55 7.55 0.00 5.25
496 497 1.032114 GGAAGTATGTGGGTGCAGCC 61.032 60.000 28.15 28.15 0.00 4.85
497 498 0.322456 GAAGTATGTGGGTGCAGCCA 60.322 55.000 33.13 33.13 39.65 4.75
498 499 0.332632 AAGTATGTGGGTGCAGCCAT 59.667 50.000 37.93 26.17 39.65 4.40
499 500 0.107017 AGTATGTGGGTGCAGCCATC 60.107 55.000 37.93 29.10 39.65 3.51
500 501 1.153188 TATGTGGGTGCAGCCATCG 60.153 57.895 37.93 0.00 39.65 3.84
501 502 2.607411 TATGTGGGTGCAGCCATCGG 62.607 60.000 37.93 0.00 39.65 4.18
502 503 4.722700 GTGGGTGCAGCCATCGGT 62.723 66.667 37.93 0.00 39.65 4.69
503 504 4.720902 TGGGTGCAGCCATCGGTG 62.721 66.667 33.13 0.00 39.65 4.94
513 514 4.552365 CATCGGTGCCTGGGCGAT 62.552 66.667 7.14 1.31 45.51 4.58
514 515 2.842462 ATCGGTGCCTGGGCGATA 60.842 61.111 7.14 0.00 45.51 2.92
515 516 2.217038 ATCGGTGCCTGGGCGATAT 61.217 57.895 7.14 0.00 45.51 1.63
516 517 0.902984 ATCGGTGCCTGGGCGATATA 60.903 55.000 7.14 0.00 45.51 0.86
517 518 1.079819 CGGTGCCTGGGCGATATAG 60.080 63.158 7.14 0.00 45.51 1.31
518 519 1.376037 GGTGCCTGGGCGATATAGC 60.376 63.158 7.14 0.00 45.51 2.97
528 529 1.359848 GCGATATAGCCCGACAATGG 58.640 55.000 0.00 0.00 0.00 3.16
534 535 4.740822 GCCCGACAATGGCTGGGT 62.741 66.667 15.45 0.00 45.70 4.51
535 536 2.751436 CCCGACAATGGCTGGGTG 60.751 66.667 7.68 0.00 36.86 4.61
536 537 2.350895 CCGACAATGGCTGGGTGA 59.649 61.111 0.00 0.00 0.00 4.02
537 538 1.303236 CCGACAATGGCTGGGTGAA 60.303 57.895 0.00 0.00 0.00 3.18
538 539 1.308069 CCGACAATGGCTGGGTGAAG 61.308 60.000 0.00 0.00 0.00 3.02
539 540 0.606401 CGACAATGGCTGGGTGAAGT 60.606 55.000 0.00 0.00 0.00 3.01
540 541 1.338674 CGACAATGGCTGGGTGAAGTA 60.339 52.381 0.00 0.00 0.00 2.24
541 542 2.359900 GACAATGGCTGGGTGAAGTAG 58.640 52.381 0.00 0.00 0.00 2.57
542 543 1.098050 CAATGGCTGGGTGAAGTAGC 58.902 55.000 0.00 0.00 36.74 3.58
548 549 4.832608 GGGTGAAGTAGCCCGGCG 62.833 72.222 3.05 0.00 41.22 6.46
549 550 4.832608 GGTGAAGTAGCCCGGCGG 62.833 72.222 21.46 21.46 0.00 6.13
550 551 4.078516 GTGAAGTAGCCCGGCGGT 62.079 66.667 26.32 10.07 0.00 5.68
551 552 3.766691 TGAAGTAGCCCGGCGGTC 61.767 66.667 26.32 13.39 0.00 4.79
552 553 4.525949 GAAGTAGCCCGGCGGTCC 62.526 72.222 26.32 15.42 0.00 4.46
575 576 4.821589 GCACGCCGGGGAAGAGAG 62.822 72.222 27.23 8.30 0.00 3.20
576 577 4.821589 CACGCCGGGGAAGAGAGC 62.822 72.222 27.23 0.00 0.00 4.09
581 582 4.148825 CGGGGAAGAGAGCCGGTG 62.149 72.222 1.90 0.00 0.00 4.94
582 583 4.475135 GGGGAAGAGAGCCGGTGC 62.475 72.222 1.90 0.00 37.95 5.01
583 584 4.821589 GGGAAGAGAGCCGGTGCG 62.822 72.222 1.90 0.00 44.33 5.34
1461 1463 2.441901 GCAATTCCATCGGGGGCA 60.442 61.111 0.00 0.00 37.22 5.36
1677 1679 8.481492 AATAGATTGGGCATCATTTGTAATCA 57.519 30.769 0.00 0.00 33.75 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.904865 TGTCTCCGGCATGGTTCTCT 60.905 55.000 0.00 0.00 39.52 3.10
1 2 0.460987 CTGTCTCCGGCATGGTTCTC 60.461 60.000 0.00 0.00 39.52 2.87
2 3 1.599047 CTGTCTCCGGCATGGTTCT 59.401 57.895 0.00 0.00 39.52 3.01
3 4 2.109126 GCTGTCTCCGGCATGGTTC 61.109 63.158 0.00 0.00 42.86 3.62
4 5 2.045926 GCTGTCTCCGGCATGGTT 60.046 61.111 0.00 0.00 42.86 3.67
5 6 4.457496 CGCTGTCTCCGGCATGGT 62.457 66.667 0.00 0.00 43.56 3.55
6 7 4.457496 ACGCTGTCTCCGGCATGG 62.457 66.667 0.00 0.00 43.56 3.66
7 8 2.887568 GACGCTGTCTCCGGCATG 60.888 66.667 0.00 0.00 43.56 4.06
8 9 4.498520 CGACGCTGTCTCCGGCAT 62.499 66.667 0.00 0.00 43.56 4.40
11 12 4.778415 CACCGACGCTGTCTCCGG 62.778 72.222 0.00 0.00 46.65 5.14
12 13 3.669036 CTCACCGACGCTGTCTCCG 62.669 68.421 7.03 0.00 0.00 4.63
13 14 2.179517 CTCACCGACGCTGTCTCC 59.820 66.667 7.03 0.00 0.00 3.71
14 15 1.135731 CTCTCACCGACGCTGTCTC 59.864 63.158 7.03 0.00 0.00 3.36
15 16 0.889638 TTCTCTCACCGACGCTGTCT 60.890 55.000 7.03 0.00 0.00 3.41
16 17 0.455295 CTTCTCTCACCGACGCTGTC 60.455 60.000 0.00 0.00 0.00 3.51
17 18 1.581954 CTTCTCTCACCGACGCTGT 59.418 57.895 0.00 0.00 0.00 4.40
18 19 1.803519 GCTTCTCTCACCGACGCTG 60.804 63.158 0.00 0.00 0.00 5.18
19 20 2.569134 GCTTCTCTCACCGACGCT 59.431 61.111 0.00 0.00 0.00 5.07
20 21 2.507324 GGCTTCTCTCACCGACGC 60.507 66.667 0.00 0.00 0.00 5.19
21 22 2.182030 GGGCTTCTCTCACCGACG 59.818 66.667 0.00 0.00 0.00 5.12
24 25 1.107538 TATCCGGGCTTCTCTCACCG 61.108 60.000 0.00 0.00 45.57 4.94
25 26 0.676736 CTATCCGGGCTTCTCTCACC 59.323 60.000 0.00 0.00 0.00 4.02
26 27 0.032815 GCTATCCGGGCTTCTCTCAC 59.967 60.000 0.00 0.00 0.00 3.51
27 28 1.456196 CGCTATCCGGGCTTCTCTCA 61.456 60.000 0.00 0.00 0.00 3.27
28 29 1.287503 CGCTATCCGGGCTTCTCTC 59.712 63.158 0.00 0.00 0.00 3.20
29 30 3.449349 CGCTATCCGGGCTTCTCT 58.551 61.111 0.00 0.00 0.00 3.10
38 39 0.455295 GCGATTCTCTCCGCTATCCG 60.455 60.000 0.00 0.00 46.96 4.18
39 40 3.410098 GCGATTCTCTCCGCTATCC 57.590 57.895 0.00 0.00 46.96 2.59
45 46 1.339610 AGGATCAAGCGATTCTCTCCG 59.660 52.381 0.00 0.00 31.05 4.63
46 47 2.363680 TCAGGATCAAGCGATTCTCTCC 59.636 50.000 0.00 0.00 35.03 3.71
47 48 3.641648 CTCAGGATCAAGCGATTCTCTC 58.358 50.000 0.00 0.00 35.03 3.20
48 49 2.224018 GCTCAGGATCAAGCGATTCTCT 60.224 50.000 0.00 0.00 35.03 3.10
49 50 2.134346 GCTCAGGATCAAGCGATTCTC 58.866 52.381 0.00 0.00 35.03 2.87
50 51 2.237393 GCTCAGGATCAAGCGATTCT 57.763 50.000 0.00 0.00 38.07 2.40
56 57 1.522580 GGGTCGCTCAGGATCAAGC 60.523 63.158 0.00 0.00 35.13 4.01
57 58 0.179089 CTGGGTCGCTCAGGATCAAG 60.179 60.000 0.00 0.00 0.00 3.02
58 59 0.614697 TCTGGGTCGCTCAGGATCAA 60.615 55.000 6.85 0.00 33.36 2.57
59 60 1.000359 TCTGGGTCGCTCAGGATCA 60.000 57.895 6.85 0.00 33.36 2.92
60 61 1.323271 TGTCTGGGTCGCTCAGGATC 61.323 60.000 6.85 0.00 33.36 3.36
61 62 1.305297 TGTCTGGGTCGCTCAGGAT 60.305 57.895 6.85 0.00 33.36 3.24
62 63 2.117423 TGTCTGGGTCGCTCAGGA 59.883 61.111 6.85 0.00 33.36 3.86
63 64 2.262915 GTGTCTGGGTCGCTCAGG 59.737 66.667 6.85 0.00 33.36 3.86
64 65 2.126307 CGTGTCTGGGTCGCTCAG 60.126 66.667 0.83 0.83 0.00 3.35
65 66 3.680786 CCGTGTCTGGGTCGCTCA 61.681 66.667 0.00 0.00 0.00 4.26
66 67 2.338015 TACCGTGTCTGGGTCGCTC 61.338 63.158 0.00 0.00 38.99 5.03
67 68 2.282674 TACCGTGTCTGGGTCGCT 60.283 61.111 0.00 0.00 38.99 4.93
68 69 2.126189 GTACCGTGTCTGGGTCGC 60.126 66.667 0.00 0.00 38.99 5.19
69 70 2.177531 CGTACCGTGTCTGGGTCG 59.822 66.667 0.00 0.00 38.99 4.79
70 71 2.126189 GCGTACCGTGTCTGGGTC 60.126 66.667 0.00 0.00 38.99 4.46
71 72 3.688159 GGCGTACCGTGTCTGGGT 61.688 66.667 0.00 0.00 41.62 4.51
81 82 4.382320 TGCTCAACCCGGCGTACC 62.382 66.667 6.01 0.00 0.00 3.34
82 83 3.116531 GTGCTCAACCCGGCGTAC 61.117 66.667 6.01 0.00 0.00 3.67
83 84 3.291101 GAGTGCTCAACCCGGCGTA 62.291 63.158 6.01 0.00 0.00 4.42
84 85 4.681978 GAGTGCTCAACCCGGCGT 62.682 66.667 6.01 0.00 0.00 5.68
85 86 4.379243 AGAGTGCTCAACCCGGCG 62.379 66.667 0.00 0.00 0.00 6.46
86 87 2.527951 ATCAGAGTGCTCAACCCGGC 62.528 60.000 0.00 0.00 0.00 6.13
87 88 0.824109 TATCAGAGTGCTCAACCCGG 59.176 55.000 0.00 0.00 0.00 5.73
88 89 1.202463 CCTATCAGAGTGCTCAACCCG 60.202 57.143 1.82 0.00 0.00 5.28
89 90 2.102252 CTCCTATCAGAGTGCTCAACCC 59.898 54.545 1.82 0.00 0.00 4.11
90 91 2.482839 GCTCCTATCAGAGTGCTCAACC 60.483 54.545 1.82 0.00 36.20 3.77
91 92 2.797792 CGCTCCTATCAGAGTGCTCAAC 60.798 54.545 1.82 0.00 37.55 3.18
92 93 1.406898 CGCTCCTATCAGAGTGCTCAA 59.593 52.381 1.82 0.00 37.55 3.02
93 94 1.028130 CGCTCCTATCAGAGTGCTCA 58.972 55.000 1.82 0.00 37.55 4.26
94 95 3.863681 CGCTCCTATCAGAGTGCTC 57.136 57.895 0.00 0.00 37.55 4.26
97 98 1.007964 CGGCGCTCCTATCAGAGTG 60.008 63.158 7.64 0.00 45.32 3.51
98 99 2.196925 CCGGCGCTCCTATCAGAGT 61.197 63.158 7.64 0.00 36.20 3.24
99 100 2.647875 CCGGCGCTCCTATCAGAG 59.352 66.667 7.64 0.00 36.92 3.35
100 101 3.606662 GCCGGCGCTCCTATCAGA 61.607 66.667 12.58 0.00 0.00 3.27
117 118 2.664851 TTTCACAGACAGCGGCCG 60.665 61.111 24.05 24.05 0.00 6.13
118 119 2.328099 CCTTTCACAGACAGCGGCC 61.328 63.158 0.00 0.00 0.00 6.13
119 120 0.884704 TTCCTTTCACAGACAGCGGC 60.885 55.000 0.00 0.00 0.00 6.53
120 121 0.868406 GTTCCTTTCACAGACAGCGG 59.132 55.000 0.00 0.00 0.00 5.52
121 122 1.528586 CAGTTCCTTTCACAGACAGCG 59.471 52.381 0.00 0.00 0.00 5.18
122 123 2.289002 CACAGTTCCTTTCACAGACAGC 59.711 50.000 0.00 0.00 0.00 4.40
123 124 2.289002 GCACAGTTCCTTTCACAGACAG 59.711 50.000 0.00 0.00 0.00 3.51
124 125 2.288666 GCACAGTTCCTTTCACAGACA 58.711 47.619 0.00 0.00 0.00 3.41
125 126 1.261619 CGCACAGTTCCTTTCACAGAC 59.738 52.381 0.00 0.00 0.00 3.51
126 127 1.581934 CGCACAGTTCCTTTCACAGA 58.418 50.000 0.00 0.00 0.00 3.41
127 128 0.588252 CCGCACAGTTCCTTTCACAG 59.412 55.000 0.00 0.00 0.00 3.66
128 129 0.817634 CCCGCACAGTTCCTTTCACA 60.818 55.000 0.00 0.00 0.00 3.58
129 130 1.515521 CCCCGCACAGTTCCTTTCAC 61.516 60.000 0.00 0.00 0.00 3.18
130 131 1.228124 CCCCGCACAGTTCCTTTCA 60.228 57.895 0.00 0.00 0.00 2.69
131 132 2.626780 GCCCCGCACAGTTCCTTTC 61.627 63.158 0.00 0.00 0.00 2.62
132 133 2.597510 GCCCCGCACAGTTCCTTT 60.598 61.111 0.00 0.00 0.00 3.11
133 134 3.884774 TGCCCCGCACAGTTCCTT 61.885 61.111 0.00 0.00 31.71 3.36
144 145 3.916392 GAGACACTGTCGTGCCCCG 62.916 68.421 3.46 0.00 45.10 5.73
145 146 2.048127 GAGACACTGTCGTGCCCC 60.048 66.667 3.46 0.00 45.10 5.80
146 147 0.737715 GATGAGACACTGTCGTGCCC 60.738 60.000 3.46 0.00 45.10 5.36
147 148 0.737715 GGATGAGACACTGTCGTGCC 60.738 60.000 3.46 1.43 45.10 5.01
148 149 0.038251 TGGATGAGACACTGTCGTGC 60.038 55.000 3.46 1.11 45.10 5.34
149 150 1.702886 GTGGATGAGACACTGTCGTG 58.297 55.000 3.46 0.00 46.63 4.35
150 151 0.241213 CGTGGATGAGACACTGTCGT 59.759 55.000 3.46 0.00 37.67 4.34
151 152 0.521735 TCGTGGATGAGACACTGTCG 59.478 55.000 3.46 0.00 37.67 4.35
152 153 2.724977 TTCGTGGATGAGACACTGTC 57.275 50.000 0.38 0.38 36.71 3.51
153 154 2.548067 GGTTTCGTGGATGAGACACTGT 60.548 50.000 0.00 0.00 36.71 3.55
154 155 2.069273 GGTTTCGTGGATGAGACACTG 58.931 52.381 0.00 0.00 36.71 3.66
155 156 1.002087 GGGTTTCGTGGATGAGACACT 59.998 52.381 0.00 0.00 36.71 3.55
156 157 1.002087 AGGGTTTCGTGGATGAGACAC 59.998 52.381 0.00 0.00 35.55 3.67
157 158 1.275291 GAGGGTTTCGTGGATGAGACA 59.725 52.381 0.00 0.00 0.00 3.41
158 159 1.736032 CGAGGGTTTCGTGGATGAGAC 60.736 57.143 0.00 0.00 44.27 3.36
159 160 0.530744 CGAGGGTTTCGTGGATGAGA 59.469 55.000 0.00 0.00 44.27 3.27
160 161 3.050703 CGAGGGTTTCGTGGATGAG 57.949 57.895 0.00 0.00 44.27 2.90
169 170 3.134458 CAGCCATTATCTCGAGGGTTTC 58.866 50.000 13.56 0.00 0.00 2.78
170 171 2.746472 GCAGCCATTATCTCGAGGGTTT 60.746 50.000 13.56 0.00 0.00 3.27
171 172 1.202698 GCAGCCATTATCTCGAGGGTT 60.203 52.381 13.56 0.00 0.00 4.11
172 173 0.394565 GCAGCCATTATCTCGAGGGT 59.605 55.000 13.56 4.49 0.00 4.34
173 174 0.668706 CGCAGCCATTATCTCGAGGG 60.669 60.000 13.56 6.44 0.00 4.30
174 175 0.315251 TCGCAGCCATTATCTCGAGG 59.685 55.000 13.56 0.00 0.00 4.63
175 176 2.057316 CTTCGCAGCCATTATCTCGAG 58.943 52.381 5.93 5.93 0.00 4.04
176 177 1.269778 CCTTCGCAGCCATTATCTCGA 60.270 52.381 0.00 0.00 0.00 4.04
177 178 1.143305 CCTTCGCAGCCATTATCTCG 58.857 55.000 0.00 0.00 0.00 4.04
178 179 2.411904 CTCCTTCGCAGCCATTATCTC 58.588 52.381 0.00 0.00 0.00 2.75
179 180 1.542108 GCTCCTTCGCAGCCATTATCT 60.542 52.381 0.00 0.00 0.00 1.98
180 181 0.871057 GCTCCTTCGCAGCCATTATC 59.129 55.000 0.00 0.00 0.00 1.75
181 182 0.882042 CGCTCCTTCGCAGCCATTAT 60.882 55.000 0.00 0.00 32.83 1.28
182 183 1.521457 CGCTCCTTCGCAGCCATTA 60.521 57.895 0.00 0.00 32.83 1.90
183 184 2.821366 CGCTCCTTCGCAGCCATT 60.821 61.111 0.00 0.00 32.83 3.16
184 185 4.845580 CCGCTCCTTCGCAGCCAT 62.846 66.667 0.00 0.00 32.83 4.40
192 193 3.780173 AGCTCCTGCCGCTCCTTC 61.780 66.667 0.00 0.00 40.80 3.46
193 194 4.093291 CAGCTCCTGCCGCTCCTT 62.093 66.667 0.00 0.00 40.80 3.36
208 209 2.882777 CTCTACTGGCGTGCGCAG 60.883 66.667 12.22 14.69 44.11 5.18
209 210 4.435436 CCTCTACTGGCGTGCGCA 62.435 66.667 18.36 5.66 44.11 6.09
210 211 2.552585 TTACCTCTACTGGCGTGCGC 62.553 60.000 8.17 8.17 41.06 6.09
211 212 0.102481 ATTACCTCTACTGGCGTGCG 59.898 55.000 0.00 0.00 0.00 5.34
212 213 2.311124 AATTACCTCTACTGGCGTGC 57.689 50.000 0.00 0.00 0.00 5.34
213 214 5.196341 TGATAATTACCTCTACTGGCGTG 57.804 43.478 0.00 0.00 0.00 5.34
214 215 4.262079 GCTGATAATTACCTCTACTGGCGT 60.262 45.833 0.00 0.00 0.00 5.68
215 216 4.238514 GCTGATAATTACCTCTACTGGCG 58.761 47.826 0.00 0.00 0.00 5.69
216 217 5.011125 TCTGCTGATAATTACCTCTACTGGC 59.989 44.000 0.00 0.00 0.00 4.85
217 218 6.040955 TGTCTGCTGATAATTACCTCTACTGG 59.959 42.308 0.00 0.00 0.00 4.00
218 219 7.043961 TGTCTGCTGATAATTACCTCTACTG 57.956 40.000 0.00 0.00 0.00 2.74
219 220 7.343316 AGTTGTCTGCTGATAATTACCTCTACT 59.657 37.037 6.08 0.00 0.00 2.57
220 221 7.493367 AGTTGTCTGCTGATAATTACCTCTAC 58.507 38.462 6.08 0.00 0.00 2.59
221 222 7.661536 AGTTGTCTGCTGATAATTACCTCTA 57.338 36.000 6.08 0.00 0.00 2.43
222 223 6.552445 AGTTGTCTGCTGATAATTACCTCT 57.448 37.500 6.08 0.00 0.00 3.69
223 224 6.818644 TCAAGTTGTCTGCTGATAATTACCTC 59.181 38.462 6.08 0.00 0.00 3.85
224 225 6.595716 GTCAAGTTGTCTGCTGATAATTACCT 59.404 38.462 6.08 0.00 0.00 3.08
225 226 6.455646 CGTCAAGTTGTCTGCTGATAATTACC 60.456 42.308 6.08 0.00 0.00 2.85
226 227 6.455646 CCGTCAAGTTGTCTGCTGATAATTAC 60.456 42.308 6.08 0.00 0.00 1.89
227 228 5.580691 CCGTCAAGTTGTCTGCTGATAATTA 59.419 40.000 6.08 0.00 0.00 1.40
228 229 4.393062 CCGTCAAGTTGTCTGCTGATAATT 59.607 41.667 6.08 0.00 0.00 1.40
229 230 3.935203 CCGTCAAGTTGTCTGCTGATAAT 59.065 43.478 6.08 0.00 0.00 1.28
230 231 3.244078 ACCGTCAAGTTGTCTGCTGATAA 60.244 43.478 2.11 0.00 0.00 1.75
231 232 2.299013 ACCGTCAAGTTGTCTGCTGATA 59.701 45.455 2.11 0.00 0.00 2.15
232 233 1.070758 ACCGTCAAGTTGTCTGCTGAT 59.929 47.619 2.11 0.00 0.00 2.90
233 234 0.464036 ACCGTCAAGTTGTCTGCTGA 59.536 50.000 2.11 0.00 0.00 4.26
234 235 0.583438 CACCGTCAAGTTGTCTGCTG 59.417 55.000 2.11 0.00 0.00 4.41
235 236 0.464036 TCACCGTCAAGTTGTCTGCT 59.536 50.000 2.11 0.00 0.00 4.24
236 237 0.861837 CTCACCGTCAAGTTGTCTGC 59.138 55.000 2.11 0.00 0.00 4.26
237 238 1.068588 TCCTCACCGTCAAGTTGTCTG 59.931 52.381 2.11 0.00 0.00 3.51
238 239 1.341531 CTCCTCACCGTCAAGTTGTCT 59.658 52.381 2.11 0.00 0.00 3.41
239 240 1.340248 TCTCCTCACCGTCAAGTTGTC 59.660 52.381 2.11 0.00 0.00 3.18
240 241 1.410004 TCTCCTCACCGTCAAGTTGT 58.590 50.000 2.11 0.00 0.00 3.32
241 242 2.029020 TCATCTCCTCACCGTCAAGTTG 60.029 50.000 0.00 0.00 0.00 3.16
242 243 2.028930 GTCATCTCCTCACCGTCAAGTT 60.029 50.000 0.00 0.00 0.00 2.66
243 244 1.546476 GTCATCTCCTCACCGTCAAGT 59.454 52.381 0.00 0.00 0.00 3.16
244 245 1.134965 GGTCATCTCCTCACCGTCAAG 60.135 57.143 0.00 0.00 0.00 3.02
245 246 0.895530 GGTCATCTCCTCACCGTCAA 59.104 55.000 0.00 0.00 0.00 3.18
246 247 1.313091 CGGTCATCTCCTCACCGTCA 61.313 60.000 1.50 0.00 46.58 4.35
247 248 1.433879 CGGTCATCTCCTCACCGTC 59.566 63.158 1.50 0.00 46.58 4.79
248 249 3.604629 CGGTCATCTCCTCACCGT 58.395 61.111 1.50 0.00 46.58 4.83
250 251 1.134965 CACTTCGGTCATCTCCTCACC 60.135 57.143 0.00 0.00 0.00 4.02
251 252 1.819288 TCACTTCGGTCATCTCCTCAC 59.181 52.381 0.00 0.00 0.00 3.51
252 253 2.215942 TCACTTCGGTCATCTCCTCA 57.784 50.000 0.00 0.00 0.00 3.86
253 254 3.254892 GTTTCACTTCGGTCATCTCCTC 58.745 50.000 0.00 0.00 0.00 3.71
254 255 2.352814 CGTTTCACTTCGGTCATCTCCT 60.353 50.000 0.00 0.00 0.00 3.69
255 256 1.993370 CGTTTCACTTCGGTCATCTCC 59.007 52.381 0.00 0.00 0.00 3.71
256 257 1.993370 CCGTTTCACTTCGGTCATCTC 59.007 52.381 0.00 0.00 41.58 2.75
257 258 2.080286 CCGTTTCACTTCGGTCATCT 57.920 50.000 0.00 0.00 41.58 2.90
264 265 4.424430 CGCCGCCGTTTCACTTCG 62.424 66.667 0.00 0.00 0.00 3.79
265 266 4.084888 CCGCCGCCGTTTCACTTC 62.085 66.667 0.00 0.00 0.00 3.01
291 292 3.320879 ATGCAGCCAGTGGTCGAGG 62.321 63.158 11.74 0.00 0.00 4.63
292 293 2.104859 CATGCAGCCAGTGGTCGAG 61.105 63.158 11.74 3.31 0.00 4.04
293 294 2.046988 CATGCAGCCAGTGGTCGA 60.047 61.111 11.74 0.00 0.00 4.20
294 295 3.129502 CCATGCAGCCAGTGGTCG 61.130 66.667 11.74 3.15 0.00 4.79
295 296 1.748122 CTCCATGCAGCCAGTGGTC 60.748 63.158 11.74 3.09 34.61 4.02
296 297 2.226315 TCTCCATGCAGCCAGTGGT 61.226 57.895 11.74 0.00 34.61 4.16
297 298 1.748122 GTCTCCATGCAGCCAGTGG 60.748 63.158 4.20 4.20 0.00 4.00
298 299 2.104859 CGTCTCCATGCAGCCAGTG 61.105 63.158 0.00 0.00 0.00 3.66
299 300 2.267006 CGTCTCCATGCAGCCAGT 59.733 61.111 0.00 0.00 0.00 4.00
300 301 1.812922 GACGTCTCCATGCAGCCAG 60.813 63.158 8.70 0.00 0.00 4.85
301 302 2.110757 TTGACGTCTCCATGCAGCCA 62.111 55.000 17.92 0.00 0.00 4.75
302 303 1.364626 CTTGACGTCTCCATGCAGCC 61.365 60.000 17.92 0.00 0.00 4.85
303 304 1.364626 CCTTGACGTCTCCATGCAGC 61.365 60.000 17.92 0.00 0.00 5.25
304 305 0.742281 CCCTTGACGTCTCCATGCAG 60.742 60.000 17.92 1.51 0.00 4.41
305 306 1.296392 CCCTTGACGTCTCCATGCA 59.704 57.895 17.92 0.00 0.00 3.96
306 307 0.535335 TACCCTTGACGTCTCCATGC 59.465 55.000 17.92 0.00 0.00 4.06
307 308 1.471676 GCTACCCTTGACGTCTCCATG 60.472 57.143 17.92 4.26 0.00 3.66
308 309 0.824759 GCTACCCTTGACGTCTCCAT 59.175 55.000 17.92 1.26 0.00 3.41
309 310 1.255667 GGCTACCCTTGACGTCTCCA 61.256 60.000 17.92 0.00 0.00 3.86
310 311 1.516423 GGCTACCCTTGACGTCTCC 59.484 63.158 17.92 1.62 0.00 3.71
311 312 1.139095 CGGCTACCCTTGACGTCTC 59.861 63.158 17.92 0.00 0.00 3.36
312 313 1.303888 TCGGCTACCCTTGACGTCT 60.304 57.895 17.92 0.00 0.00 4.18
313 314 1.139095 CTCGGCTACCCTTGACGTC 59.861 63.158 9.11 9.11 0.00 4.34
314 315 2.348888 CCTCGGCTACCCTTGACGT 61.349 63.158 0.00 0.00 0.00 4.34
315 316 2.494918 CCTCGGCTACCCTTGACG 59.505 66.667 0.00 0.00 0.00 4.35
316 317 2.187163 GCCTCGGCTACCCTTGAC 59.813 66.667 0.00 0.00 38.26 3.18
317 318 2.284331 TGCCTCGGCTACCCTTGA 60.284 61.111 9.65 0.00 42.51 3.02
318 319 1.327690 TACTGCCTCGGCTACCCTTG 61.328 60.000 9.65 0.00 42.51 3.61
319 320 1.001248 TACTGCCTCGGCTACCCTT 59.999 57.895 9.65 0.00 42.51 3.95
320 321 1.455959 CTACTGCCTCGGCTACCCT 60.456 63.158 9.65 0.00 42.51 4.34
321 322 2.499827 CCTACTGCCTCGGCTACCC 61.500 68.421 9.65 0.00 42.51 3.69
322 323 1.455217 TCCTACTGCCTCGGCTACC 60.455 63.158 9.65 0.00 42.51 3.18
323 324 1.457009 CCTCCTACTGCCTCGGCTAC 61.457 65.000 9.65 0.00 42.51 3.58
324 325 1.152735 CCTCCTACTGCCTCGGCTA 60.153 63.158 9.65 0.00 42.51 3.93
325 326 1.934459 TACCTCCTACTGCCTCGGCT 61.934 60.000 9.65 0.00 42.51 5.52
326 327 1.455217 TACCTCCTACTGCCTCGGC 60.455 63.158 0.00 0.00 42.35 5.54
327 328 0.183014 TCTACCTCCTACTGCCTCGG 59.817 60.000 0.00 0.00 0.00 4.63
328 329 1.883275 CATCTACCTCCTACTGCCTCG 59.117 57.143 0.00 0.00 0.00 4.63
329 330 2.243810 CCATCTACCTCCTACTGCCTC 58.756 57.143 0.00 0.00 0.00 4.70
330 331 1.133009 CCCATCTACCTCCTACTGCCT 60.133 57.143 0.00 0.00 0.00 4.75
331 332 1.133136 TCCCATCTACCTCCTACTGCC 60.133 57.143 0.00 0.00 0.00 4.85
332 333 2.383442 TCCCATCTACCTCCTACTGC 57.617 55.000 0.00 0.00 0.00 4.40
333 334 4.021894 CGATTTCCCATCTACCTCCTACTG 60.022 50.000 0.00 0.00 0.00 2.74
334 335 4.153411 CGATTTCCCATCTACCTCCTACT 58.847 47.826 0.00 0.00 0.00 2.57
335 336 3.258622 CCGATTTCCCATCTACCTCCTAC 59.741 52.174 0.00 0.00 0.00 3.18
336 337 3.507411 CCGATTTCCCATCTACCTCCTA 58.493 50.000 0.00 0.00 0.00 2.94
337 338 2.330216 CCGATTTCCCATCTACCTCCT 58.670 52.381 0.00 0.00 0.00 3.69
338 339 1.348036 CCCGATTTCCCATCTACCTCC 59.652 57.143 0.00 0.00 0.00 4.30
339 340 1.348036 CCCCGATTTCCCATCTACCTC 59.652 57.143 0.00 0.00 0.00 3.85
340 341 1.061657 TCCCCGATTTCCCATCTACCT 60.062 52.381 0.00 0.00 0.00 3.08
341 342 1.430992 TCCCCGATTTCCCATCTACC 58.569 55.000 0.00 0.00 0.00 3.18
342 343 2.027100 GGATCCCCGATTTCCCATCTAC 60.027 54.545 0.00 0.00 0.00 2.59
343 344 2.266279 GGATCCCCGATTTCCCATCTA 58.734 52.381 0.00 0.00 0.00 1.98
344 345 1.068121 GGATCCCCGATTTCCCATCT 58.932 55.000 0.00 0.00 0.00 2.90
345 346 3.652581 GGATCCCCGATTTCCCATC 57.347 57.895 0.00 0.00 0.00 3.51
356 357 4.899239 CGCAGCTGACGGATCCCC 62.899 72.222 20.43 0.00 0.00 4.81
364 365 4.803426 CCCTCGACCGCAGCTGAC 62.803 72.222 20.43 8.06 0.00 3.51
366 367 4.069232 TTCCCTCGACCGCAGCTG 62.069 66.667 10.11 10.11 0.00 4.24
367 368 4.070552 GTTCCCTCGACCGCAGCT 62.071 66.667 0.00 0.00 0.00 4.24
368 369 3.876589 TTGTTCCCTCGACCGCAGC 62.877 63.158 0.00 0.00 0.00 5.25
369 370 1.738099 CTTGTTCCCTCGACCGCAG 60.738 63.158 0.00 0.00 0.00 5.18
370 371 2.342279 CTTGTTCCCTCGACCGCA 59.658 61.111 0.00 0.00 0.00 5.69
371 372 2.434359 CCTTGTTCCCTCGACCGC 60.434 66.667 0.00 0.00 0.00 5.68
372 373 2.264794 CCCTTGTTCCCTCGACCG 59.735 66.667 0.00 0.00 0.00 4.79
373 374 2.046217 GCCCTTGTTCCCTCGACC 60.046 66.667 0.00 0.00 0.00 4.79
374 375 2.046217 GGCCCTTGTTCCCTCGAC 60.046 66.667 0.00 0.00 0.00 4.20
375 376 3.702048 CGGCCCTTGTTCCCTCGA 61.702 66.667 0.00 0.00 0.00 4.04
376 377 3.702048 TCGGCCCTTGTTCCCTCG 61.702 66.667 0.00 0.00 0.00 4.63
377 378 2.046217 GTCGGCCCTTGTTCCCTC 60.046 66.667 0.00 0.00 0.00 4.30
378 379 4.016706 CGTCGGCCCTTGTTCCCT 62.017 66.667 0.00 0.00 0.00 4.20
379 380 3.325201 ATCGTCGGCCCTTGTTCCC 62.325 63.158 0.00 0.00 0.00 3.97
380 381 2.106683 CATCGTCGGCCCTTGTTCC 61.107 63.158 0.00 0.00 0.00 3.62
381 382 2.750888 GCATCGTCGGCCCTTGTTC 61.751 63.158 0.00 0.00 0.00 3.18
382 383 2.746277 GCATCGTCGGCCCTTGTT 60.746 61.111 0.00 0.00 0.00 2.83
383 384 4.778143 GGCATCGTCGGCCCTTGT 62.778 66.667 0.00 0.00 45.87 3.16
389 390 3.585990 CAATGGGGCATCGTCGGC 61.586 66.667 0.00 0.00 0.00 5.54
390 391 1.748879 AACAATGGGGCATCGTCGG 60.749 57.895 0.00 0.00 0.00 4.79
391 392 1.024046 TCAACAATGGGGCATCGTCG 61.024 55.000 0.00 0.00 0.00 5.12
392 393 1.066002 CATCAACAATGGGGCATCGTC 59.934 52.381 0.00 0.00 0.00 4.20
393 394 1.105457 CATCAACAATGGGGCATCGT 58.895 50.000 0.00 0.00 0.00 3.73
394 395 1.105457 ACATCAACAATGGGGCATCG 58.895 50.000 0.00 0.00 39.90 3.84
395 396 2.624838 CCTACATCAACAATGGGGCATC 59.375 50.000 0.00 0.00 39.90 3.91
396 397 2.024080 ACCTACATCAACAATGGGGCAT 60.024 45.455 0.00 0.00 39.90 4.40
397 398 1.357420 ACCTACATCAACAATGGGGCA 59.643 47.619 0.00 0.00 39.90 5.36
398 399 2.024414 GACCTACATCAACAATGGGGC 58.976 52.381 0.00 0.00 39.90 5.80
399 400 2.093181 TCGACCTACATCAACAATGGGG 60.093 50.000 0.00 0.00 39.90 4.96
400 401 3.260475 TCGACCTACATCAACAATGGG 57.740 47.619 0.00 0.00 39.90 4.00
401 402 4.253685 ACTTCGACCTACATCAACAATGG 58.746 43.478 0.00 0.00 39.90 3.16
402 403 5.005779 GCTACTTCGACCTACATCAACAATG 59.994 44.000 0.00 0.00 41.48 2.82
403 404 5.109903 GCTACTTCGACCTACATCAACAAT 58.890 41.667 0.00 0.00 0.00 2.71
404 405 4.021807 TGCTACTTCGACCTACATCAACAA 60.022 41.667 0.00 0.00 0.00 2.83
405 406 3.508402 TGCTACTTCGACCTACATCAACA 59.492 43.478 0.00 0.00 0.00 3.33
406 407 4.106029 TGCTACTTCGACCTACATCAAC 57.894 45.455 0.00 0.00 0.00 3.18
407 408 3.130516 CCTGCTACTTCGACCTACATCAA 59.869 47.826 0.00 0.00 0.00 2.57
408 409 2.688446 CCTGCTACTTCGACCTACATCA 59.312 50.000 0.00 0.00 0.00 3.07
409 410 2.950309 TCCTGCTACTTCGACCTACATC 59.050 50.000 0.00 0.00 0.00 3.06
410 411 2.952978 CTCCTGCTACTTCGACCTACAT 59.047 50.000 0.00 0.00 0.00 2.29
411 412 2.366533 CTCCTGCTACTTCGACCTACA 58.633 52.381 0.00 0.00 0.00 2.74
412 413 1.065851 GCTCCTGCTACTTCGACCTAC 59.934 57.143 0.00 0.00 36.03 3.18
413 414 1.340697 TGCTCCTGCTACTTCGACCTA 60.341 52.381 0.00 0.00 40.48 3.08
414 415 0.612174 TGCTCCTGCTACTTCGACCT 60.612 55.000 0.00 0.00 40.48 3.85
415 416 0.179124 CTGCTCCTGCTACTTCGACC 60.179 60.000 0.00 0.00 40.48 4.79
416 417 0.528470 ACTGCTCCTGCTACTTCGAC 59.472 55.000 0.00 0.00 40.48 4.20
417 418 1.067565 CAACTGCTCCTGCTACTTCGA 60.068 52.381 0.00 0.00 40.48 3.71
418 419 1.337260 ACAACTGCTCCTGCTACTTCG 60.337 52.381 0.00 0.00 40.48 3.79
419 420 2.072298 CACAACTGCTCCTGCTACTTC 58.928 52.381 0.00 0.00 40.48 3.01
420 421 1.417890 ACACAACTGCTCCTGCTACTT 59.582 47.619 0.00 0.00 40.48 2.24
421 422 1.051812 ACACAACTGCTCCTGCTACT 58.948 50.000 0.00 0.00 40.48 2.57
422 423 1.532868 CAACACAACTGCTCCTGCTAC 59.467 52.381 0.00 0.00 40.48 3.58
423 424 1.543208 CCAACACAACTGCTCCTGCTA 60.543 52.381 0.00 0.00 40.48 3.49
424 425 0.820891 CCAACACAACTGCTCCTGCT 60.821 55.000 0.00 0.00 40.48 4.24
425 426 0.819259 TCCAACACAACTGCTCCTGC 60.819 55.000 0.00 0.00 40.20 4.85
426 427 1.233019 CTCCAACACAACTGCTCCTG 58.767 55.000 0.00 0.00 0.00 3.86
427 428 0.839946 ACTCCAACACAACTGCTCCT 59.160 50.000 0.00 0.00 0.00 3.69
428 429 2.037251 TCTACTCCAACACAACTGCTCC 59.963 50.000 0.00 0.00 0.00 4.70
429 430 3.060602 GTCTACTCCAACACAACTGCTC 58.939 50.000 0.00 0.00 0.00 4.26
430 431 2.545952 CGTCTACTCCAACACAACTGCT 60.546 50.000 0.00 0.00 0.00 4.24
431 432 1.792949 CGTCTACTCCAACACAACTGC 59.207 52.381 0.00 0.00 0.00 4.40
432 433 1.792949 GCGTCTACTCCAACACAACTG 59.207 52.381 0.00 0.00 0.00 3.16
433 434 1.270147 GGCGTCTACTCCAACACAACT 60.270 52.381 0.00 0.00 0.00 3.16
434 435 1.145803 GGCGTCTACTCCAACACAAC 58.854 55.000 0.00 0.00 0.00 3.32
435 436 0.753867 TGGCGTCTACTCCAACACAA 59.246 50.000 0.00 0.00 0.00 3.33
436 437 0.973632 ATGGCGTCTACTCCAACACA 59.026 50.000 0.00 0.00 34.01 3.72
437 438 1.359848 CATGGCGTCTACTCCAACAC 58.640 55.000 0.00 0.00 34.01 3.32
438 439 0.391130 GCATGGCGTCTACTCCAACA 60.391 55.000 0.00 0.00 34.01 3.33
439 440 0.391130 TGCATGGCGTCTACTCCAAC 60.391 55.000 0.00 0.00 34.01 3.77
440 441 0.541392 ATGCATGGCGTCTACTCCAA 59.459 50.000 0.00 0.00 34.01 3.53
441 442 0.179076 CATGCATGGCGTCTACTCCA 60.179 55.000 19.40 0.00 34.92 3.86
442 443 1.502163 GCATGCATGGCGTCTACTCC 61.502 60.000 27.34 3.43 0.00 3.85
443 444 1.502163 GGCATGCATGGCGTCTACTC 61.502 60.000 33.91 11.56 43.58 2.59
444 445 1.524621 GGCATGCATGGCGTCTACT 60.525 57.895 33.91 0.00 43.58 2.57
445 446 3.025619 GGCATGCATGGCGTCTAC 58.974 61.111 33.91 12.98 43.58 2.59
452 453 0.603065 CAGATGATGGGCATGCATGG 59.397 55.000 27.34 10.03 37.34 3.66
453 454 0.038251 GCAGATGATGGGCATGCATG 60.038 55.000 22.70 22.70 37.34 4.06
454 455 0.178961 AGCAGATGATGGGCATGCAT 60.179 50.000 21.36 4.91 37.34 3.96
455 456 1.106944 CAGCAGATGATGGGCATGCA 61.107 55.000 21.36 0.00 37.34 3.96
456 457 0.822121 TCAGCAGATGATGGGCATGC 60.822 55.000 9.90 9.90 37.34 4.06
457 458 3.414486 TCAGCAGATGATGGGCATG 57.586 52.632 0.00 0.00 37.34 4.06
467 468 3.181447 CCCACATACTTCCATCAGCAGAT 60.181 47.826 0.00 0.00 33.87 2.90
468 469 2.171237 CCCACATACTTCCATCAGCAGA 59.829 50.000 0.00 0.00 0.00 4.26
469 470 2.092753 ACCCACATACTTCCATCAGCAG 60.093 50.000 0.00 0.00 0.00 4.24
470 471 1.915489 ACCCACATACTTCCATCAGCA 59.085 47.619 0.00 0.00 0.00 4.41
471 472 2.292267 CACCCACATACTTCCATCAGC 58.708 52.381 0.00 0.00 0.00 4.26
472 473 2.292267 GCACCCACATACTTCCATCAG 58.708 52.381 0.00 0.00 0.00 2.90
473 474 1.632920 TGCACCCACATACTTCCATCA 59.367 47.619 0.00 0.00 0.00 3.07
474 475 2.292267 CTGCACCCACATACTTCCATC 58.708 52.381 0.00 0.00 0.00 3.51
475 476 1.683011 GCTGCACCCACATACTTCCAT 60.683 52.381 0.00 0.00 0.00 3.41
476 477 0.322456 GCTGCACCCACATACTTCCA 60.322 55.000 0.00 0.00 0.00 3.53
477 478 1.032114 GGCTGCACCCACATACTTCC 61.032 60.000 0.50 0.00 0.00 3.46
478 479 0.322456 TGGCTGCACCCACATACTTC 60.322 55.000 0.50 0.00 37.83 3.01
479 480 0.332632 ATGGCTGCACCCACATACTT 59.667 50.000 1.93 0.00 37.79 2.24
480 481 0.107017 GATGGCTGCACCCACATACT 60.107 55.000 1.93 0.00 37.79 2.12
481 482 1.439353 CGATGGCTGCACCCACATAC 61.439 60.000 1.93 0.00 37.79 2.39
482 483 1.153188 CGATGGCTGCACCCACATA 60.153 57.895 1.93 0.00 37.79 2.29
483 484 2.438975 CGATGGCTGCACCCACAT 60.439 61.111 1.93 0.00 37.79 3.21
484 485 4.720902 CCGATGGCTGCACCCACA 62.721 66.667 1.93 0.00 37.79 4.17
485 486 4.722700 ACCGATGGCTGCACCCAC 62.723 66.667 1.93 0.00 37.79 4.61
486 487 4.720902 CACCGATGGCTGCACCCA 62.721 66.667 2.49 2.49 39.65 4.51
496 497 2.454832 ATATCGCCCAGGCACCGATG 62.455 60.000 9.78 0.00 41.29 3.84
497 498 0.902984 TATATCGCCCAGGCACCGAT 60.903 55.000 9.78 10.66 43.32 4.18
498 499 1.532078 TATATCGCCCAGGCACCGA 60.532 57.895 9.78 3.91 42.06 4.69
499 500 1.079819 CTATATCGCCCAGGCACCG 60.080 63.158 9.78 0.00 42.06 4.94
500 501 1.376037 GCTATATCGCCCAGGCACC 60.376 63.158 9.78 0.00 42.06 5.01
501 502 1.376037 GGCTATATCGCCCAGGCAC 60.376 63.158 9.78 0.00 44.41 5.01
502 503 3.068881 GGCTATATCGCCCAGGCA 58.931 61.111 9.78 0.00 44.41 4.75
509 510 1.359848 CCATTGTCGGGCTATATCGC 58.640 55.000 0.00 0.00 0.00 4.58
518 519 2.751436 CACCCAGCCATTGTCGGG 60.751 66.667 0.00 0.00 44.88 5.14
519 520 1.303236 TTCACCCAGCCATTGTCGG 60.303 57.895 0.00 0.00 0.00 4.79
520 521 0.606401 ACTTCACCCAGCCATTGTCG 60.606 55.000 0.00 0.00 0.00 4.35
521 522 2.359900 CTACTTCACCCAGCCATTGTC 58.640 52.381 0.00 0.00 0.00 3.18
522 523 1.614317 GCTACTTCACCCAGCCATTGT 60.614 52.381 0.00 0.00 0.00 2.71
523 524 1.098050 GCTACTTCACCCAGCCATTG 58.902 55.000 0.00 0.00 0.00 2.82
524 525 3.577389 GCTACTTCACCCAGCCATT 57.423 52.632 0.00 0.00 0.00 3.16
531 532 4.832608 CGCCGGGCTACTTCACCC 62.833 72.222 18.34 0.00 43.25 4.61
532 533 4.832608 CCGCCGGGCTACTTCACC 62.833 72.222 18.34 0.00 0.00 4.02
533 534 4.078516 ACCGCCGGGCTACTTCAC 62.079 66.667 18.34 0.00 36.48 3.18
534 535 3.766691 GACCGCCGGGCTACTTCA 61.767 66.667 18.34 0.00 36.48 3.02
535 536 4.525949 GGACCGCCGGGCTACTTC 62.526 72.222 18.34 7.41 36.48 3.01
558 559 4.821589 CTCTCTTCCCCGGCGTGC 62.822 72.222 6.01 0.00 0.00 5.34
559 560 4.821589 GCTCTCTTCCCCGGCGTG 62.822 72.222 6.01 0.00 0.00 5.34
564 565 4.148825 CACCGGCTCTCTTCCCCG 62.149 72.222 0.00 0.00 41.60 5.73
565 566 4.475135 GCACCGGCTCTCTTCCCC 62.475 72.222 0.00 0.00 36.96 4.81
566 567 4.821589 CGCACCGGCTCTCTTCCC 62.822 72.222 0.00 0.00 38.10 3.97
598 599 0.111253 CATGGGAGCTATTCACCCCC 59.889 60.000 5.02 1.25 44.12 5.40
1203 1205 9.639563 AAATTGGGAGATAAAAACCAAAATTGT 57.360 25.926 0.00 0.00 45.18 2.71
1461 1463 3.264845 ACCAATGGAAGGGCGGGT 61.265 61.111 6.16 0.00 0.00 5.28
1554 1556 3.025978 CCATCAAATTGCCCTGCTTCTA 58.974 45.455 0.00 0.00 0.00 2.10
2245 2250 5.756347 TCATAGAAGTTGTTGTTAGCACGTT 59.244 36.000 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.