Multiple sequence alignment - TraesCS3A01G464600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G464600 chr3A 100.000 2517 0 0 1 2517 699108241 699110757 0.000000e+00 4649.0
1 TraesCS3A01G464600 chr3A 78.082 438 84 4 1 429 699534470 699534036 1.480000e-67 267.0
2 TraesCS3A01G464600 chr3D 94.270 2007 105 4 519 2517 70093970 70095974 0.000000e+00 3061.0
3 TraesCS3A01G464600 chr3D 96.176 523 19 1 1 522 564398931 564399453 0.000000e+00 854.0
4 TraesCS3A01G464600 chr3D 80.457 481 91 1 1 478 564523037 564523517 5.120000e-97 364.0
5 TraesCS3A01G464600 chr3D 72.673 333 78 12 6 330 569466203 569466530 5.730000e-17 99.0
6 TraesCS3A01G464600 chr1D 93.709 2003 99 19 527 2517 22594392 22592405 0.000000e+00 2976.0
7 TraesCS3A01G464600 chr1D 93.330 2009 91 14 519 2517 395450052 395448077 0.000000e+00 2928.0
8 TraesCS3A01G464600 chr5D 94.021 1940 102 8 519 2448 435154604 435156539 0.000000e+00 2928.0
9 TraesCS3A01G464600 chr5D 93.260 1276 60 9 519 1785 565841274 565842532 0.000000e+00 1857.0
10 TraesCS3A01G464600 chr7A 92.850 2000 117 17 527 2517 668988053 668986071 0.000000e+00 2878.0
11 TraesCS3A01G464600 chr7A 94.828 1218 53 6 1308 2517 711777753 711776538 0.000000e+00 1892.0
12 TraesCS3A01G464600 chr7D 92.664 1963 94 14 519 2448 503923853 503925798 0.000000e+00 2782.0
13 TraesCS3A01G464600 chr7D 93.644 1825 89 6 525 2340 69201961 69200155 0.000000e+00 2702.0
14 TraesCS3A01G464600 chr7D 93.636 1650 69 12 525 2164 629661708 629660085 0.000000e+00 2433.0
15 TraesCS3A01G464600 chr7D 95.344 1439 53 4 1092 2517 4429142 4430579 0.000000e+00 2274.0
16 TraesCS3A01G464600 chr7D 93.851 1171 61 6 1178 2340 564083082 564084249 0.000000e+00 1753.0
17 TraesCS3A01G464600 chr7D 91.152 486 26 4 519 1003 4428288 4428757 0.000000e+00 643.0
18 TraesCS3A01G464600 chr7D 97.403 77 2 0 2441 2517 414109793 414109869 5.650000e-27 132.0
19 TraesCS3A01G464600 chr5A 92.999 1814 99 11 715 2517 639271975 639270179 0.000000e+00 2621.0
20 TraesCS3A01G464600 chr3B 79.335 421 81 4 1 418 752972136 752972553 8.810000e-75 291.0
21 TraesCS3A01G464600 chr3B 79.907 214 31 10 201 402 753557767 753557554 2.020000e-31 147.0
22 TraesCS3A01G464600 chr3B 73.156 339 73 16 6 333 756376291 756376622 3.420000e-19 106.0
23 TraesCS3A01G464600 chrUn 72.861 339 74 15 6 333 329511296 329510965 1.590000e-17 100.0
24 TraesCS3A01G464600 chrUn 72.566 339 75 15 6 333 217838345 217838014 7.410000e-16 95.3
25 TraesCS3A01G464600 chrUn 72.566 339 75 15 6 333 227102613 227102282 7.410000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G464600 chr3A 699108241 699110757 2516 False 4649.0 4649 100.000 1 2517 1 chr3A.!!$F1 2516
1 TraesCS3A01G464600 chr3D 70093970 70095974 2004 False 3061.0 3061 94.270 519 2517 1 chr3D.!!$F1 1998
2 TraesCS3A01G464600 chr3D 564398931 564399453 522 False 854.0 854 96.176 1 522 1 chr3D.!!$F2 521
3 TraesCS3A01G464600 chr1D 22592405 22594392 1987 True 2976.0 2976 93.709 527 2517 1 chr1D.!!$R1 1990
4 TraesCS3A01G464600 chr1D 395448077 395450052 1975 True 2928.0 2928 93.330 519 2517 1 chr1D.!!$R2 1998
5 TraesCS3A01G464600 chr5D 435154604 435156539 1935 False 2928.0 2928 94.021 519 2448 1 chr5D.!!$F1 1929
6 TraesCS3A01G464600 chr5D 565841274 565842532 1258 False 1857.0 1857 93.260 519 1785 1 chr5D.!!$F2 1266
7 TraesCS3A01G464600 chr7A 668986071 668988053 1982 True 2878.0 2878 92.850 527 2517 1 chr7A.!!$R1 1990
8 TraesCS3A01G464600 chr7A 711776538 711777753 1215 True 1892.0 1892 94.828 1308 2517 1 chr7A.!!$R2 1209
9 TraesCS3A01G464600 chr7D 503923853 503925798 1945 False 2782.0 2782 92.664 519 2448 1 chr7D.!!$F2 1929
10 TraesCS3A01G464600 chr7D 69200155 69201961 1806 True 2702.0 2702 93.644 525 2340 1 chr7D.!!$R1 1815
11 TraesCS3A01G464600 chr7D 629660085 629661708 1623 True 2433.0 2433 93.636 525 2164 1 chr7D.!!$R2 1639
12 TraesCS3A01G464600 chr7D 564083082 564084249 1167 False 1753.0 1753 93.851 1178 2340 1 chr7D.!!$F3 1162
13 TraesCS3A01G464600 chr7D 4428288 4430579 2291 False 1458.5 2274 93.248 519 2517 2 chr7D.!!$F4 1998
14 TraesCS3A01G464600 chr5A 639270179 639271975 1796 True 2621.0 2621 92.999 715 2517 1 chr5A.!!$R1 1802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 515 0.033796 CTCTGGCATCCACCCAATGT 60.034 55.0 0.0 0.0 30.66 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2401 2915 1.059913 GCATGTATCTAGGCCCTGGT 58.94 55.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.227380 GATGTTGAGCGAGGCGGAT 60.227 57.895 0.00 0.00 0.00 4.18
45 46 1.493950 GATGTTGAGCGAGGCGGATG 61.494 60.000 0.00 0.00 0.00 3.51
46 47 3.567797 GTTGAGCGAGGCGGATGC 61.568 66.667 0.00 0.00 41.71 3.91
56 57 3.017323 GCGGATGCCTTCGTGATG 58.983 61.111 0.00 0.00 33.98 3.07
57 58 2.537560 GCGGATGCCTTCGTGATGG 61.538 63.158 0.00 0.00 33.98 3.51
58 59 1.143838 CGGATGCCTTCGTGATGGA 59.856 57.895 6.01 0.00 0.00 3.41
59 60 0.250038 CGGATGCCTTCGTGATGGAT 60.250 55.000 6.01 0.00 0.00 3.41
60 61 1.000843 CGGATGCCTTCGTGATGGATA 59.999 52.381 6.01 0.00 0.00 2.59
61 62 2.417719 GGATGCCTTCGTGATGGATAC 58.582 52.381 6.01 0.00 0.00 2.24
62 63 2.037772 GGATGCCTTCGTGATGGATACT 59.962 50.000 6.01 0.00 37.61 2.12
63 64 2.602257 TGCCTTCGTGATGGATACTG 57.398 50.000 6.01 0.00 37.61 2.74
64 65 1.138859 TGCCTTCGTGATGGATACTGG 59.861 52.381 6.01 0.00 37.61 4.00
65 66 1.139058 GCCTTCGTGATGGATACTGGT 59.861 52.381 6.01 0.00 37.61 4.00
66 67 2.803492 GCCTTCGTGATGGATACTGGTC 60.803 54.545 6.01 0.00 37.61 4.02
67 68 2.430694 CCTTCGTGATGGATACTGGTCA 59.569 50.000 0.00 0.00 37.61 4.02
68 69 3.448686 CTTCGTGATGGATACTGGTCAC 58.551 50.000 0.00 0.00 39.28 3.67
69 70 2.735151 TCGTGATGGATACTGGTCACT 58.265 47.619 0.00 0.00 39.97 3.41
70 71 3.893521 TCGTGATGGATACTGGTCACTA 58.106 45.455 0.00 0.00 39.97 2.74
71 72 3.883489 TCGTGATGGATACTGGTCACTAG 59.117 47.826 0.00 0.00 39.97 2.57
72 73 3.551046 CGTGATGGATACTGGTCACTAGC 60.551 52.174 0.00 0.00 39.97 3.42
73 74 3.639094 GTGATGGATACTGGTCACTAGCT 59.361 47.826 0.00 0.00 39.44 3.32
74 75 4.100189 GTGATGGATACTGGTCACTAGCTT 59.900 45.833 0.00 0.00 39.44 3.74
75 76 4.100035 TGATGGATACTGGTCACTAGCTTG 59.900 45.833 0.00 0.00 37.61 4.01
76 77 2.168521 TGGATACTGGTCACTAGCTTGC 59.831 50.000 0.00 0.00 37.61 4.01
77 78 2.483889 GGATACTGGTCACTAGCTTGCC 60.484 54.545 0.00 0.00 0.00 4.52
78 79 1.639722 TACTGGTCACTAGCTTGCCA 58.360 50.000 0.00 0.00 0.00 4.92
79 80 0.987294 ACTGGTCACTAGCTTGCCAT 59.013 50.000 0.00 0.00 0.00 4.40
80 81 1.065854 ACTGGTCACTAGCTTGCCATC 60.066 52.381 0.00 0.00 0.00 3.51
81 82 0.983467 TGGTCACTAGCTTGCCATCA 59.017 50.000 0.00 0.00 0.00 3.07
82 83 1.350684 TGGTCACTAGCTTGCCATCAA 59.649 47.619 0.00 0.00 0.00 2.57
83 84 2.025981 TGGTCACTAGCTTGCCATCAAT 60.026 45.455 0.00 0.00 0.00 2.57
84 85 3.199727 TGGTCACTAGCTTGCCATCAATA 59.800 43.478 0.00 0.00 0.00 1.90
85 86 4.141413 TGGTCACTAGCTTGCCATCAATAT 60.141 41.667 0.00 0.00 0.00 1.28
86 87 4.453819 GGTCACTAGCTTGCCATCAATATC 59.546 45.833 0.00 0.00 0.00 1.63
87 88 4.151335 GTCACTAGCTTGCCATCAATATCG 59.849 45.833 0.00 0.00 0.00 2.92
88 89 4.039124 TCACTAGCTTGCCATCAATATCGA 59.961 41.667 0.00 0.00 0.00 3.59
89 90 4.751600 CACTAGCTTGCCATCAATATCGAA 59.248 41.667 0.00 0.00 0.00 3.71
90 91 4.752101 ACTAGCTTGCCATCAATATCGAAC 59.248 41.667 0.00 0.00 0.00 3.95
91 92 3.813443 AGCTTGCCATCAATATCGAACT 58.187 40.909 0.00 0.00 0.00 3.01
92 93 3.562973 AGCTTGCCATCAATATCGAACTG 59.437 43.478 0.00 0.00 0.00 3.16
93 94 3.561310 GCTTGCCATCAATATCGAACTGA 59.439 43.478 0.00 0.00 0.00 3.41
94 95 4.035558 GCTTGCCATCAATATCGAACTGAA 59.964 41.667 0.00 0.00 0.00 3.02
95 96 5.739752 TTGCCATCAATATCGAACTGAAG 57.260 39.130 0.00 0.00 0.00 3.02
96 97 4.769688 TGCCATCAATATCGAACTGAAGT 58.230 39.130 0.00 0.00 0.00 3.01
97 98 5.912892 TGCCATCAATATCGAACTGAAGTA 58.087 37.500 0.00 0.00 0.00 2.24
98 99 5.985530 TGCCATCAATATCGAACTGAAGTAG 59.014 40.000 0.00 0.00 0.00 2.57
99 100 5.107298 GCCATCAATATCGAACTGAAGTAGC 60.107 44.000 0.00 0.00 0.00 3.58
100 101 5.406780 CCATCAATATCGAACTGAAGTAGCC 59.593 44.000 0.00 0.00 0.00 3.93
101 102 5.592104 TCAATATCGAACTGAAGTAGCCA 57.408 39.130 0.00 0.00 0.00 4.75
102 103 5.348986 TCAATATCGAACTGAAGTAGCCAC 58.651 41.667 0.00 0.00 0.00 5.01
103 104 2.674796 ATCGAACTGAAGTAGCCACC 57.325 50.000 0.00 0.00 0.00 4.61
104 105 1.629043 TCGAACTGAAGTAGCCACCT 58.371 50.000 0.00 0.00 0.00 4.00
105 106 1.968493 TCGAACTGAAGTAGCCACCTT 59.032 47.619 0.00 0.00 0.00 3.50
106 107 2.029290 TCGAACTGAAGTAGCCACCTTC 60.029 50.000 0.00 0.00 39.01 3.46
107 108 2.701107 GAACTGAAGTAGCCACCTTCC 58.299 52.381 5.47 0.00 38.00 3.46
108 109 1.729586 ACTGAAGTAGCCACCTTCCA 58.270 50.000 5.47 0.00 38.00 3.53
109 110 2.054799 ACTGAAGTAGCCACCTTCCAA 58.945 47.619 5.47 0.00 38.00 3.53
110 111 2.441750 ACTGAAGTAGCCACCTTCCAAA 59.558 45.455 5.47 0.00 38.00 3.28
111 112 3.074538 ACTGAAGTAGCCACCTTCCAAAT 59.925 43.478 5.47 0.00 38.00 2.32
112 113 3.686016 TGAAGTAGCCACCTTCCAAATC 58.314 45.455 5.47 0.00 38.00 2.17
113 114 3.330701 TGAAGTAGCCACCTTCCAAATCT 59.669 43.478 5.47 0.00 38.00 2.40
114 115 3.356529 AGTAGCCACCTTCCAAATCTG 57.643 47.619 0.00 0.00 0.00 2.90
115 116 2.912956 AGTAGCCACCTTCCAAATCTGA 59.087 45.455 0.00 0.00 0.00 3.27
116 117 2.206576 AGCCACCTTCCAAATCTGAC 57.793 50.000 0.00 0.00 0.00 3.51
117 118 1.177401 GCCACCTTCCAAATCTGACC 58.823 55.000 0.00 0.00 0.00 4.02
118 119 1.547675 GCCACCTTCCAAATCTGACCA 60.548 52.381 0.00 0.00 0.00 4.02
119 120 2.875296 CCACCTTCCAAATCTGACCAA 58.125 47.619 0.00 0.00 0.00 3.67
120 121 2.558359 CCACCTTCCAAATCTGACCAAC 59.442 50.000 0.00 0.00 0.00 3.77
121 122 3.221771 CACCTTCCAAATCTGACCAACA 58.778 45.455 0.00 0.00 0.00 3.33
122 123 3.004734 CACCTTCCAAATCTGACCAACAC 59.995 47.826 0.00 0.00 0.00 3.32
123 124 2.558359 CCTTCCAAATCTGACCAACACC 59.442 50.000 0.00 0.00 0.00 4.16
124 125 3.221771 CTTCCAAATCTGACCAACACCA 58.778 45.455 0.00 0.00 0.00 4.17
125 126 2.862541 TCCAAATCTGACCAACACCAG 58.137 47.619 0.00 0.00 0.00 4.00
126 127 1.270550 CCAAATCTGACCAACACCAGC 59.729 52.381 0.00 0.00 0.00 4.85
127 128 1.955778 CAAATCTGACCAACACCAGCA 59.044 47.619 0.00 0.00 0.00 4.41
128 129 1.609208 AATCTGACCAACACCAGCAC 58.391 50.000 0.00 0.00 0.00 4.40
129 130 0.473755 ATCTGACCAACACCAGCACA 59.526 50.000 0.00 0.00 0.00 4.57
130 131 0.473755 TCTGACCAACACCAGCACAT 59.526 50.000 0.00 0.00 0.00 3.21
131 132 1.133823 TCTGACCAACACCAGCACATT 60.134 47.619 0.00 0.00 0.00 2.71
132 133 2.105649 TCTGACCAACACCAGCACATTA 59.894 45.455 0.00 0.00 0.00 1.90
133 134 2.226330 TGACCAACACCAGCACATTAC 58.774 47.619 0.00 0.00 0.00 1.89
134 135 1.539827 GACCAACACCAGCACATTACC 59.460 52.381 0.00 0.00 0.00 2.85
135 136 1.133637 ACCAACACCAGCACATTACCA 60.134 47.619 0.00 0.00 0.00 3.25
136 137 2.170166 CCAACACCAGCACATTACCAT 58.830 47.619 0.00 0.00 0.00 3.55
137 138 2.164219 CCAACACCAGCACATTACCATC 59.836 50.000 0.00 0.00 0.00 3.51
138 139 1.737838 ACACCAGCACATTACCATCG 58.262 50.000 0.00 0.00 0.00 3.84
139 140 0.378257 CACCAGCACATTACCATCGC 59.622 55.000 0.00 0.00 0.00 4.58
140 141 0.035534 ACCAGCACATTACCATCGCA 60.036 50.000 0.00 0.00 0.00 5.10
141 142 1.093972 CCAGCACATTACCATCGCAA 58.906 50.000 0.00 0.00 0.00 4.85
142 143 1.064505 CCAGCACATTACCATCGCAAG 59.935 52.381 0.00 0.00 0.00 4.01
154 155 4.277239 CGCAAGAATCGACCACCA 57.723 55.556 0.00 0.00 43.02 4.17
155 156 1.787847 CGCAAGAATCGACCACCAC 59.212 57.895 0.00 0.00 43.02 4.16
156 157 0.948623 CGCAAGAATCGACCACCACA 60.949 55.000 0.00 0.00 43.02 4.17
157 158 1.453155 GCAAGAATCGACCACCACAT 58.547 50.000 0.00 0.00 0.00 3.21
158 159 1.812571 GCAAGAATCGACCACCACATT 59.187 47.619 0.00 0.00 0.00 2.71
159 160 2.159517 GCAAGAATCGACCACCACATTC 60.160 50.000 0.00 0.00 0.00 2.67
160 161 2.403252 AGAATCGACCACCACATTCC 57.597 50.000 0.00 0.00 0.00 3.01
161 162 1.628340 AGAATCGACCACCACATTCCA 59.372 47.619 0.00 0.00 0.00 3.53
162 163 2.039746 AGAATCGACCACCACATTCCAA 59.960 45.455 0.00 0.00 0.00 3.53
163 164 2.806945 ATCGACCACCACATTCCAAT 57.193 45.000 0.00 0.00 0.00 3.16
164 165 2.577606 TCGACCACCACATTCCAATT 57.422 45.000 0.00 0.00 0.00 2.32
165 166 2.870175 TCGACCACCACATTCCAATTT 58.130 42.857 0.00 0.00 0.00 1.82
166 167 3.226777 TCGACCACCACATTCCAATTTT 58.773 40.909 0.00 0.00 0.00 1.82
167 168 3.639094 TCGACCACCACATTCCAATTTTT 59.361 39.130 0.00 0.00 0.00 1.94
168 169 3.740321 CGACCACCACATTCCAATTTTTG 59.260 43.478 0.00 0.00 0.00 2.44
169 170 4.500545 CGACCACCACATTCCAATTTTTGA 60.501 41.667 0.00 0.00 0.00 2.69
170 171 5.550290 GACCACCACATTCCAATTTTTGAT 58.450 37.500 0.00 0.00 0.00 2.57
171 172 6.571344 CGACCACCACATTCCAATTTTTGATA 60.571 38.462 0.00 0.00 0.00 2.15
172 173 7.072263 ACCACCACATTCCAATTTTTGATAA 57.928 32.000 0.00 0.00 0.00 1.75
173 174 6.934083 ACCACCACATTCCAATTTTTGATAAC 59.066 34.615 0.00 0.00 0.00 1.89
174 175 6.371271 CCACCACATTCCAATTTTTGATAACC 59.629 38.462 0.00 0.00 0.00 2.85
175 176 7.160726 CACCACATTCCAATTTTTGATAACCT 58.839 34.615 0.00 0.00 0.00 3.50
176 177 7.331687 CACCACATTCCAATTTTTGATAACCTC 59.668 37.037 0.00 0.00 0.00 3.85
177 178 7.016072 ACCACATTCCAATTTTTGATAACCTCA 59.984 33.333 0.00 0.00 0.00 3.86
178 179 7.331687 CCACATTCCAATTTTTGATAACCTCAC 59.668 37.037 0.00 0.00 32.17 3.51
179 180 7.331687 CACATTCCAATTTTTGATAACCTCACC 59.668 37.037 0.00 0.00 32.17 4.02
180 181 6.985653 TTCCAATTTTTGATAACCTCACCA 57.014 33.333 0.00 0.00 32.17 4.17
181 182 6.985653 TCCAATTTTTGATAACCTCACCAA 57.014 33.333 0.00 0.00 32.17 3.67
182 183 7.366847 TCCAATTTTTGATAACCTCACCAAA 57.633 32.000 0.00 0.00 32.17 3.28
183 184 7.213678 TCCAATTTTTGATAACCTCACCAAAC 58.786 34.615 0.00 0.00 32.17 2.93
184 185 7.070571 TCCAATTTTTGATAACCTCACCAAACT 59.929 33.333 0.00 0.00 32.17 2.66
185 186 7.171337 CCAATTTTTGATAACCTCACCAAACTG 59.829 37.037 0.00 0.00 32.17 3.16
186 187 6.783708 TTTTTGATAACCTCACCAAACTGT 57.216 33.333 0.00 0.00 32.17 3.55
187 188 7.883391 TTTTTGATAACCTCACCAAACTGTA 57.117 32.000 0.00 0.00 32.17 2.74
188 189 6.870971 TTTGATAACCTCACCAAACTGTAC 57.129 37.500 0.00 0.00 32.17 2.90
189 190 5.554437 TGATAACCTCACCAAACTGTACA 57.446 39.130 0.00 0.00 0.00 2.90
190 191 6.121776 TGATAACCTCACCAAACTGTACAT 57.878 37.500 0.00 0.00 0.00 2.29
191 192 6.539173 TGATAACCTCACCAAACTGTACATT 58.461 36.000 0.00 0.00 0.00 2.71
192 193 7.681679 TGATAACCTCACCAAACTGTACATTA 58.318 34.615 0.00 0.00 0.00 1.90
193 194 8.158132 TGATAACCTCACCAAACTGTACATTAA 58.842 33.333 0.00 0.00 0.00 1.40
194 195 6.877611 AACCTCACCAAACTGTACATTAAG 57.122 37.500 0.00 0.00 0.00 1.85
195 196 6.182507 ACCTCACCAAACTGTACATTAAGA 57.817 37.500 0.00 0.00 0.00 2.10
196 197 6.779860 ACCTCACCAAACTGTACATTAAGAT 58.220 36.000 0.00 0.00 0.00 2.40
197 198 7.913789 ACCTCACCAAACTGTACATTAAGATA 58.086 34.615 0.00 0.00 0.00 1.98
198 199 8.548877 ACCTCACCAAACTGTACATTAAGATAT 58.451 33.333 0.00 0.00 0.00 1.63
199 200 8.830580 CCTCACCAAACTGTACATTAAGATATG 58.169 37.037 0.00 0.00 0.00 1.78
200 201 8.208718 TCACCAAACTGTACATTAAGATATGC 57.791 34.615 0.00 0.00 0.00 3.14
201 202 7.826744 TCACCAAACTGTACATTAAGATATGCA 59.173 33.333 0.00 0.00 0.00 3.96
202 203 8.458052 CACCAAACTGTACATTAAGATATGCAA 58.542 33.333 0.00 0.00 0.00 4.08
203 204 8.458843 ACCAAACTGTACATTAAGATATGCAAC 58.541 33.333 0.00 0.00 0.00 4.17
204 205 7.915397 CCAAACTGTACATTAAGATATGCAACC 59.085 37.037 0.00 0.00 0.00 3.77
205 206 6.844696 ACTGTACATTAAGATATGCAACCG 57.155 37.500 0.00 0.00 0.00 4.44
206 207 5.758296 ACTGTACATTAAGATATGCAACCGG 59.242 40.000 0.00 0.00 0.00 5.28
207 208 4.513692 TGTACATTAAGATATGCAACCGGC 59.486 41.667 0.00 0.00 45.13 6.13
217 218 3.107017 GCAACCGGCAATTCAACTC 57.893 52.632 0.00 0.00 43.97 3.01
218 219 0.729140 GCAACCGGCAATTCAACTCG 60.729 55.000 0.00 0.00 43.97 4.18
219 220 0.109781 CAACCGGCAATTCAACTCGG 60.110 55.000 0.00 0.00 45.42 4.63
220 221 3.981308 CCGGCAATTCAACTCGGT 58.019 55.556 0.00 0.00 36.38 4.69
221 222 3.146783 CCGGCAATTCAACTCGGTA 57.853 52.632 0.00 0.00 36.38 4.02
222 223 1.663695 CCGGCAATTCAACTCGGTAT 58.336 50.000 0.00 0.00 36.38 2.73
223 224 2.014128 CCGGCAATTCAACTCGGTATT 58.986 47.619 0.00 0.00 36.38 1.89
224 225 2.422127 CCGGCAATTCAACTCGGTATTT 59.578 45.455 0.00 0.00 36.38 1.40
225 226 3.486875 CCGGCAATTCAACTCGGTATTTC 60.487 47.826 0.00 0.00 36.38 2.17
226 227 3.126171 CGGCAATTCAACTCGGTATTTCA 59.874 43.478 0.00 0.00 0.00 2.69
227 228 4.378978 CGGCAATTCAACTCGGTATTTCAA 60.379 41.667 0.00 0.00 0.00 2.69
228 229 5.095490 GGCAATTCAACTCGGTATTTCAAG 58.905 41.667 0.00 0.00 0.00 3.02
229 230 5.095490 GCAATTCAACTCGGTATTTCAAGG 58.905 41.667 0.00 0.00 0.00 3.61
230 231 5.106317 GCAATTCAACTCGGTATTTCAAGGA 60.106 40.000 0.00 0.00 0.00 3.36
231 232 6.314784 CAATTCAACTCGGTATTTCAAGGAC 58.685 40.000 0.00 0.00 0.00 3.85
232 233 3.934068 TCAACTCGGTATTTCAAGGACC 58.066 45.455 0.00 0.00 0.00 4.46
233 234 3.325425 TCAACTCGGTATTTCAAGGACCA 59.675 43.478 0.00 0.00 32.39 4.02
234 235 4.069304 CAACTCGGTATTTCAAGGACCAA 58.931 43.478 0.00 0.00 32.39 3.67
235 236 4.360951 ACTCGGTATTTCAAGGACCAAA 57.639 40.909 0.00 0.00 32.39 3.28
236 237 4.070009 ACTCGGTATTTCAAGGACCAAAC 58.930 43.478 0.00 0.00 32.39 2.93
237 238 3.414269 TCGGTATTTCAAGGACCAAACC 58.586 45.455 0.00 0.00 32.39 3.27
238 239 3.073356 TCGGTATTTCAAGGACCAAACCT 59.927 43.478 0.00 0.00 42.69 3.50
239 240 3.439129 CGGTATTTCAAGGACCAAACCTC 59.561 47.826 0.00 0.00 39.62 3.85
240 241 3.439129 GGTATTTCAAGGACCAAACCTCG 59.561 47.826 0.00 0.00 39.62 4.63
241 242 1.314730 TTTCAAGGACCAAACCTCGC 58.685 50.000 0.00 0.00 39.62 5.03
242 243 0.472471 TTCAAGGACCAAACCTCGCT 59.528 50.000 0.00 0.00 39.62 4.93
243 244 0.472471 TCAAGGACCAAACCTCGCTT 59.528 50.000 0.00 0.00 39.62 4.68
244 245 1.133915 TCAAGGACCAAACCTCGCTTT 60.134 47.619 0.00 0.00 39.62 3.51
245 246 1.266989 CAAGGACCAAACCTCGCTTTC 59.733 52.381 0.00 0.00 39.62 2.62
246 247 0.602905 AGGACCAAACCTCGCTTTCG 60.603 55.000 0.00 0.00 34.98 3.46
247 248 0.883370 GGACCAAACCTCGCTTTCGT 60.883 55.000 0.00 0.00 36.96 3.85
248 249 1.606224 GGACCAAACCTCGCTTTCGTA 60.606 52.381 0.00 0.00 36.96 3.43
249 250 1.725164 GACCAAACCTCGCTTTCGTAG 59.275 52.381 0.00 0.00 36.96 3.51
250 251 1.069668 ACCAAACCTCGCTTTCGTAGT 59.930 47.619 0.00 0.00 36.96 2.73
251 252 1.725164 CCAAACCTCGCTTTCGTAGTC 59.275 52.381 0.00 0.00 36.96 2.59
252 253 1.725164 CAAACCTCGCTTTCGTAGTCC 59.275 52.381 0.00 0.00 36.96 3.85
253 254 1.254954 AACCTCGCTTTCGTAGTCCT 58.745 50.000 0.00 0.00 36.96 3.85
254 255 0.810016 ACCTCGCTTTCGTAGTCCTC 59.190 55.000 0.00 0.00 36.96 3.71
255 256 0.100861 CCTCGCTTTCGTAGTCCTCC 59.899 60.000 0.00 0.00 36.96 4.30
256 257 0.809385 CTCGCTTTCGTAGTCCTCCA 59.191 55.000 0.00 0.00 36.96 3.86
257 258 1.405821 CTCGCTTTCGTAGTCCTCCAT 59.594 52.381 0.00 0.00 36.96 3.41
258 259 1.404391 TCGCTTTCGTAGTCCTCCATC 59.596 52.381 0.00 0.00 36.96 3.51
259 260 1.134367 CGCTTTCGTAGTCCTCCATCA 59.866 52.381 0.00 0.00 0.00 3.07
260 261 2.223829 CGCTTTCGTAGTCCTCCATCAT 60.224 50.000 0.00 0.00 0.00 2.45
261 262 3.385577 GCTTTCGTAGTCCTCCATCATC 58.614 50.000 0.00 0.00 0.00 2.92
262 263 3.800604 GCTTTCGTAGTCCTCCATCATCC 60.801 52.174 0.00 0.00 0.00 3.51
263 264 2.748209 TCGTAGTCCTCCATCATCCA 57.252 50.000 0.00 0.00 0.00 3.41
264 265 2.587522 TCGTAGTCCTCCATCATCCAG 58.412 52.381 0.00 0.00 0.00 3.86
265 266 2.174854 TCGTAGTCCTCCATCATCCAGA 59.825 50.000 0.00 0.00 0.00 3.86
266 267 3.161067 CGTAGTCCTCCATCATCCAGAT 58.839 50.000 0.00 0.00 37.48 2.90
267 268 4.042934 TCGTAGTCCTCCATCATCCAGATA 59.957 45.833 0.00 0.00 34.43 1.98
268 269 4.952957 CGTAGTCCTCCATCATCCAGATAT 59.047 45.833 0.00 0.00 34.43 1.63
269 270 5.067153 CGTAGTCCTCCATCATCCAGATATC 59.933 48.000 0.00 0.00 34.43 1.63
270 271 5.288205 AGTCCTCCATCATCCAGATATCT 57.712 43.478 0.00 0.00 34.43 1.98
271 272 6.414586 AGTCCTCCATCATCCAGATATCTA 57.585 41.667 4.54 0.00 34.43 1.98
272 273 6.995757 AGTCCTCCATCATCCAGATATCTAT 58.004 40.000 4.54 0.00 34.43 1.98
273 274 6.840181 AGTCCTCCATCATCCAGATATCTATG 59.160 42.308 4.54 7.02 34.43 2.23
274 275 6.838090 GTCCTCCATCATCCAGATATCTATGA 59.162 42.308 16.85 16.85 34.43 2.15
275 276 7.510001 GTCCTCCATCATCCAGATATCTATGAT 59.490 40.741 19.11 19.11 39.14 2.45
276 277 8.072480 TCCTCCATCATCCAGATATCTATGATT 58.928 37.037 21.09 9.73 37.04 2.57
277 278 8.715842 CCTCCATCATCCAGATATCTATGATTT 58.284 37.037 21.09 6.90 37.04 2.17
303 304 3.775661 TCATCATTGAAGCTGCACATG 57.224 42.857 0.00 2.12 0.00 3.21
304 305 2.159296 TCATCATTGAAGCTGCACATGC 60.159 45.455 0.00 0.00 42.50 4.06
305 306 0.528924 TCATTGAAGCTGCACATGCC 59.471 50.000 0.00 0.00 41.18 4.40
306 307 0.800683 CATTGAAGCTGCACATGCCG 60.801 55.000 0.00 0.00 41.18 5.69
307 308 0.961857 ATTGAAGCTGCACATGCCGA 60.962 50.000 0.00 0.00 41.18 5.54
308 309 1.579964 TTGAAGCTGCACATGCCGAG 61.580 55.000 0.00 0.00 41.18 4.63
309 310 3.392595 GAAGCTGCACATGCCGAGC 62.393 63.158 1.02 7.86 39.50 5.03
310 311 4.710167 AGCTGCACATGCCGAGCA 62.710 61.111 15.97 7.62 41.03 4.26
319 320 2.588989 TGCCGAGCATGCCATACA 59.411 55.556 15.66 5.46 31.71 2.29
320 321 1.148949 TGCCGAGCATGCCATACAT 59.851 52.632 15.66 0.00 40.66 2.29
321 322 0.886043 TGCCGAGCATGCCATACATC 60.886 55.000 15.66 2.88 36.64 3.06
322 323 0.604780 GCCGAGCATGCCATACATCT 60.605 55.000 15.66 0.00 36.64 2.90
323 324 1.436600 CCGAGCATGCCATACATCTC 58.563 55.000 15.66 1.25 36.64 2.75
324 325 1.270465 CCGAGCATGCCATACATCTCA 60.270 52.381 15.66 0.00 36.64 3.27
325 326 2.486918 CGAGCATGCCATACATCTCAA 58.513 47.619 15.66 0.00 36.64 3.02
326 327 2.874086 CGAGCATGCCATACATCTCAAA 59.126 45.455 15.66 0.00 36.64 2.69
327 328 3.303593 CGAGCATGCCATACATCTCAAAC 60.304 47.826 15.66 0.00 36.64 2.93
328 329 3.623703 AGCATGCCATACATCTCAAACA 58.376 40.909 15.66 0.00 36.64 2.83
329 330 3.630769 AGCATGCCATACATCTCAAACAG 59.369 43.478 15.66 0.00 36.64 3.16
330 331 3.628942 GCATGCCATACATCTCAAACAGA 59.371 43.478 6.36 0.00 36.64 3.41
331 332 4.497006 GCATGCCATACATCTCAAACAGAC 60.497 45.833 6.36 0.00 36.64 3.51
332 333 4.284829 TGCCATACATCTCAAACAGACA 57.715 40.909 0.00 0.00 32.26 3.41
333 334 4.650734 TGCCATACATCTCAAACAGACAA 58.349 39.130 0.00 0.00 32.26 3.18
334 335 4.696877 TGCCATACATCTCAAACAGACAAG 59.303 41.667 0.00 0.00 32.26 3.16
335 336 4.437930 GCCATACATCTCAAACAGACAAGC 60.438 45.833 0.00 0.00 32.26 4.01
336 337 4.696877 CCATACATCTCAAACAGACAAGCA 59.303 41.667 0.00 0.00 32.26 3.91
337 338 5.391310 CCATACATCTCAAACAGACAAGCAC 60.391 44.000 0.00 0.00 32.26 4.40
338 339 2.545526 ACATCTCAAACAGACAAGCACG 59.454 45.455 0.00 0.00 32.26 5.34
339 340 1.581934 TCTCAAACAGACAAGCACGG 58.418 50.000 0.00 0.00 0.00 4.94
340 341 1.134521 TCTCAAACAGACAAGCACGGT 60.135 47.619 0.00 0.00 0.00 4.83
341 342 1.261619 CTCAAACAGACAAGCACGGTC 59.738 52.381 0.00 0.00 35.50 4.79
342 343 1.013596 CAAACAGACAAGCACGGTCA 58.986 50.000 5.42 0.00 37.74 4.02
343 344 1.003545 CAAACAGACAAGCACGGTCAG 60.004 52.381 5.42 0.42 37.74 3.51
344 345 0.464036 AACAGACAAGCACGGTCAGA 59.536 50.000 5.42 0.00 37.74 3.27
345 346 0.464036 ACAGACAAGCACGGTCAGAA 59.536 50.000 5.42 0.00 37.74 3.02
346 347 1.134521 ACAGACAAGCACGGTCAGAAA 60.135 47.619 5.42 0.00 37.74 2.52
347 348 1.261619 CAGACAAGCACGGTCAGAAAC 59.738 52.381 5.42 0.00 37.74 2.78
348 349 1.134521 AGACAAGCACGGTCAGAAACA 60.135 47.619 5.42 0.00 37.74 2.83
349 350 1.668751 GACAAGCACGGTCAGAAACAA 59.331 47.619 0.00 0.00 35.36 2.83
350 351 1.400494 ACAAGCACGGTCAGAAACAAC 59.600 47.619 0.00 0.00 0.00 3.32
351 352 1.670811 CAAGCACGGTCAGAAACAACT 59.329 47.619 0.00 0.00 0.00 3.16
352 353 1.299541 AGCACGGTCAGAAACAACTG 58.700 50.000 0.00 0.00 39.02 3.16
353 354 0.307760 GCACGGTCAGAAACAACTGG 59.692 55.000 0.00 0.00 38.31 4.00
354 355 1.663695 CACGGTCAGAAACAACTGGT 58.336 50.000 0.00 0.00 38.31 4.00
355 356 1.330521 CACGGTCAGAAACAACTGGTG 59.669 52.381 0.00 0.00 38.31 4.17
356 357 1.065709 ACGGTCAGAAACAACTGGTGT 60.066 47.619 0.00 0.00 44.64 4.16
357 358 2.168936 ACGGTCAGAAACAACTGGTGTA 59.831 45.455 0.00 0.00 40.60 2.90
358 359 2.800544 CGGTCAGAAACAACTGGTGTAG 59.199 50.000 0.00 0.00 40.60 2.74
359 360 3.491964 CGGTCAGAAACAACTGGTGTAGA 60.492 47.826 0.00 0.00 40.60 2.59
360 361 3.808174 GGTCAGAAACAACTGGTGTAGAC 59.192 47.826 0.00 5.53 40.60 2.59
361 362 4.439057 GTCAGAAACAACTGGTGTAGACA 58.561 43.478 0.00 0.00 40.60 3.41
362 363 5.057149 GTCAGAAACAACTGGTGTAGACAT 58.943 41.667 0.00 0.00 40.60 3.06
363 364 5.527582 GTCAGAAACAACTGGTGTAGACATT 59.472 40.000 0.00 0.00 40.60 2.71
364 365 6.038271 GTCAGAAACAACTGGTGTAGACATTT 59.962 38.462 0.00 0.00 40.60 2.32
365 366 6.601613 TCAGAAACAACTGGTGTAGACATTTT 59.398 34.615 0.00 0.00 40.60 1.82
366 367 6.692681 CAGAAACAACTGGTGTAGACATTTTG 59.307 38.462 0.00 0.00 40.60 2.44
367 368 4.568152 ACAACTGGTGTAGACATTTTGC 57.432 40.909 0.00 0.00 39.29 3.68
368 369 3.003275 ACAACTGGTGTAGACATTTTGCG 59.997 43.478 0.00 0.00 39.29 4.85
369 370 2.151202 ACTGGTGTAGACATTTTGCGG 58.849 47.619 0.00 0.00 0.00 5.69
370 371 2.224426 ACTGGTGTAGACATTTTGCGGA 60.224 45.455 0.00 0.00 0.00 5.54
371 372 2.811431 CTGGTGTAGACATTTTGCGGAA 59.189 45.455 0.00 0.00 0.00 4.30
372 373 2.550606 TGGTGTAGACATTTTGCGGAAC 59.449 45.455 0.00 0.00 0.00 3.62
373 374 2.550606 GGTGTAGACATTTTGCGGAACA 59.449 45.455 0.00 0.00 0.00 3.18
374 375 3.003897 GGTGTAGACATTTTGCGGAACAA 59.996 43.478 0.00 0.00 36.13 2.83
375 376 3.972502 GTGTAGACATTTTGCGGAACAAC 59.027 43.478 0.00 0.00 38.23 3.32
376 377 3.880490 TGTAGACATTTTGCGGAACAACT 59.120 39.130 0.00 0.00 38.23 3.16
377 378 3.626028 AGACATTTTGCGGAACAACTC 57.374 42.857 0.00 0.00 38.23 3.01
378 379 2.948979 AGACATTTTGCGGAACAACTCA 59.051 40.909 0.00 0.00 38.23 3.41
379 380 3.003689 AGACATTTTGCGGAACAACTCAG 59.996 43.478 0.00 0.00 38.23 3.35
380 381 2.053627 CATTTTGCGGAACAACTCAGC 58.946 47.619 0.00 0.00 44.69 4.26
381 382 1.388547 TTTTGCGGAACAACTCAGCT 58.611 45.000 0.00 0.00 44.72 4.24
382 383 0.662619 TTTGCGGAACAACTCAGCTG 59.337 50.000 7.63 7.63 44.72 4.24
383 384 0.463654 TTGCGGAACAACTCAGCTGT 60.464 50.000 14.67 0.00 44.72 4.40
384 385 1.159713 TGCGGAACAACTCAGCTGTG 61.160 55.000 14.67 14.35 44.72 3.66
385 386 1.845809 GCGGAACAACTCAGCTGTGG 61.846 60.000 19.27 13.13 41.56 4.17
386 387 0.532862 CGGAACAACTCAGCTGTGGT 60.533 55.000 19.27 10.76 0.00 4.16
387 388 0.947244 GGAACAACTCAGCTGTGGTG 59.053 55.000 27.70 27.70 32.91 4.17
388 389 1.668419 GAACAACTCAGCTGTGGTGT 58.332 50.000 28.97 28.97 40.70 4.16
389 390 1.599542 GAACAACTCAGCTGTGGTGTC 59.400 52.381 32.88 23.29 38.36 3.67
390 391 0.530650 ACAACTCAGCTGTGGTGTCG 60.531 55.000 28.97 10.38 34.77 4.35
391 392 0.249447 CAACTCAGCTGTGGTGTCGA 60.249 55.000 22.71 0.00 32.43 4.20
392 393 0.464036 AACTCAGCTGTGGTGTCGAA 59.536 50.000 19.27 0.00 32.43 3.71
393 394 0.681733 ACTCAGCTGTGGTGTCGAAT 59.318 50.000 19.27 0.00 32.43 3.34
394 395 1.893137 ACTCAGCTGTGGTGTCGAATA 59.107 47.619 19.27 0.00 32.43 1.75
395 396 2.263077 CTCAGCTGTGGTGTCGAATAC 58.737 52.381 14.67 0.00 32.43 1.89
396 397 1.067142 TCAGCTGTGGTGTCGAATACC 60.067 52.381 14.67 12.05 38.71 2.73
397 398 0.973632 AGCTGTGGTGTCGAATACCA 59.026 50.000 16.48 16.48 45.52 3.25
408 409 8.148807 TGGTGTCGAATACCATTATAATGTTG 57.851 34.615 21.20 11.28 43.00 3.33
409 410 7.075741 GGTGTCGAATACCATTATAATGTTGC 58.924 38.462 21.20 6.49 38.12 4.17
410 411 7.041372 GGTGTCGAATACCATTATAATGTTGCT 60.041 37.037 21.20 6.02 38.12 3.91
411 412 8.342634 GTGTCGAATACCATTATAATGTTGCTT 58.657 33.333 21.20 10.72 34.60 3.91
412 413 8.341903 TGTCGAATACCATTATAATGTTGCTTG 58.658 33.333 21.20 9.43 34.60 4.01
413 414 8.342634 GTCGAATACCATTATAATGTTGCTTGT 58.657 33.333 21.20 13.91 34.60 3.16
414 415 8.341903 TCGAATACCATTATAATGTTGCTTGTG 58.658 33.333 21.20 8.21 34.60 3.33
415 416 7.113404 CGAATACCATTATAATGTTGCTTGTGC 59.887 37.037 21.20 6.96 35.76 4.57
416 417 5.920193 ACCATTATAATGTTGCTTGTGCT 57.080 34.783 21.20 0.00 36.00 4.40
417 418 5.894807 ACCATTATAATGTTGCTTGTGCTC 58.105 37.500 21.20 0.00 36.00 4.26
418 419 5.653769 ACCATTATAATGTTGCTTGTGCTCT 59.346 36.000 21.20 0.00 36.00 4.09
419 420 5.975344 CCATTATAATGTTGCTTGTGCTCTG 59.025 40.000 21.20 0.63 36.00 3.35
420 421 6.183360 CCATTATAATGTTGCTTGTGCTCTGA 60.183 38.462 21.20 0.00 36.00 3.27
421 422 6.816134 TTATAATGTTGCTTGTGCTCTGAA 57.184 33.333 0.00 0.00 40.48 3.02
422 423 3.637998 AATGTTGCTTGTGCTCTGAAG 57.362 42.857 0.00 0.00 40.48 3.02
423 424 2.042686 TGTTGCTTGTGCTCTGAAGT 57.957 45.000 0.00 0.00 40.48 3.01
424 425 2.368439 TGTTGCTTGTGCTCTGAAGTT 58.632 42.857 0.00 0.00 40.48 2.66
425 426 2.754552 TGTTGCTTGTGCTCTGAAGTTT 59.245 40.909 0.00 0.00 40.48 2.66
426 427 3.181497 TGTTGCTTGTGCTCTGAAGTTTC 60.181 43.478 0.00 0.00 40.48 2.78
427 428 2.923121 TGCTTGTGCTCTGAAGTTTCT 58.077 42.857 0.00 0.00 40.48 2.52
428 429 2.874701 TGCTTGTGCTCTGAAGTTTCTC 59.125 45.455 0.00 0.00 40.48 2.87
429 430 3.137533 GCTTGTGCTCTGAAGTTTCTCT 58.862 45.455 0.00 0.00 36.03 3.10
430 431 4.202253 TGCTTGTGCTCTGAAGTTTCTCTA 60.202 41.667 0.00 0.00 40.48 2.43
431 432 4.388469 GCTTGTGCTCTGAAGTTTCTCTAG 59.612 45.833 0.00 0.00 36.03 2.43
432 433 4.527509 TGTGCTCTGAAGTTTCTCTAGG 57.472 45.455 0.00 0.00 0.00 3.02
433 434 3.898123 TGTGCTCTGAAGTTTCTCTAGGT 59.102 43.478 0.00 0.00 0.00 3.08
434 435 5.077564 TGTGCTCTGAAGTTTCTCTAGGTA 58.922 41.667 0.00 0.00 0.00 3.08
435 436 5.184096 TGTGCTCTGAAGTTTCTCTAGGTAG 59.816 44.000 0.00 0.00 0.00 3.18
436 437 5.416326 GTGCTCTGAAGTTTCTCTAGGTAGA 59.584 44.000 0.00 0.00 0.00 2.59
448 449 3.757270 TCTAGGTAGAGATGCAGGCTAC 58.243 50.000 12.48 12.48 35.05 3.58
451 452 2.517650 GTAGAGATGCAGGCTACCAC 57.482 55.000 10.63 0.00 0.00 4.16
452 453 1.032794 TAGAGATGCAGGCTACCACG 58.967 55.000 0.00 0.00 0.00 4.94
453 454 1.227380 GAGATGCAGGCTACCACGG 60.227 63.158 0.00 0.00 0.00 4.94
454 455 1.676678 GAGATGCAGGCTACCACGGA 61.677 60.000 0.00 0.00 0.00 4.69
455 456 1.220749 GATGCAGGCTACCACGGAA 59.779 57.895 0.00 0.00 0.00 4.30
456 457 1.078426 ATGCAGGCTACCACGGAAC 60.078 57.895 0.00 0.00 0.00 3.62
457 458 1.836999 ATGCAGGCTACCACGGAACA 61.837 55.000 0.00 0.00 0.00 3.18
458 459 1.741770 GCAGGCTACCACGGAACAG 60.742 63.158 0.00 0.00 0.00 3.16
459 460 1.079127 CAGGCTACCACGGAACAGG 60.079 63.158 0.00 0.00 0.00 4.00
460 461 1.229082 AGGCTACCACGGAACAGGA 60.229 57.895 0.00 0.00 0.00 3.86
461 462 0.617820 AGGCTACCACGGAACAGGAT 60.618 55.000 0.00 0.00 0.00 3.24
462 463 1.117150 GGCTACCACGGAACAGGATA 58.883 55.000 0.00 0.00 0.00 2.59
463 464 1.068741 GGCTACCACGGAACAGGATAG 59.931 57.143 0.00 0.00 0.00 2.08
464 465 1.538419 GCTACCACGGAACAGGATAGC 60.538 57.143 0.00 0.00 0.00 2.97
465 466 2.032620 CTACCACGGAACAGGATAGCT 58.967 52.381 0.00 0.00 0.00 3.32
466 467 1.276622 ACCACGGAACAGGATAGCTT 58.723 50.000 0.00 0.00 0.00 3.74
467 468 1.207329 ACCACGGAACAGGATAGCTTC 59.793 52.381 0.00 0.00 0.00 3.86
468 469 1.473434 CCACGGAACAGGATAGCTTCC 60.473 57.143 0.00 0.00 45.85 3.46
469 470 0.831307 ACGGAACAGGATAGCTTCCC 59.169 55.000 10.27 4.04 46.81 3.97
470 471 0.106894 CGGAACAGGATAGCTTCCCC 59.893 60.000 10.27 1.76 46.81 4.81
471 472 1.213296 GGAACAGGATAGCTTCCCCA 58.787 55.000 10.27 0.00 46.81 4.96
472 473 1.134068 GGAACAGGATAGCTTCCCCAC 60.134 57.143 10.27 2.66 46.81 4.61
473 474 1.559682 GAACAGGATAGCTTCCCCACA 59.440 52.381 10.27 0.00 46.81 4.17
474 475 1.207791 ACAGGATAGCTTCCCCACAG 58.792 55.000 10.27 0.06 46.81 3.66
475 476 1.273838 ACAGGATAGCTTCCCCACAGA 60.274 52.381 10.27 0.00 46.81 3.41
476 477 1.839994 CAGGATAGCTTCCCCACAGAA 59.160 52.381 10.27 0.00 46.81 3.02
477 478 2.239654 CAGGATAGCTTCCCCACAGAAA 59.760 50.000 10.27 0.00 46.81 2.52
478 479 2.507471 AGGATAGCTTCCCCACAGAAAG 59.493 50.000 10.27 0.00 46.81 2.62
479 480 2.239907 GGATAGCTTCCCCACAGAAAGT 59.760 50.000 0.00 0.00 38.75 2.66
480 481 3.454812 GGATAGCTTCCCCACAGAAAGTA 59.545 47.826 0.00 0.00 38.75 2.24
481 482 4.080526 GGATAGCTTCCCCACAGAAAGTAA 60.081 45.833 0.00 0.00 38.75 2.24
482 483 3.141767 AGCTTCCCCACAGAAAGTAAC 57.858 47.619 0.00 0.00 0.00 2.50
483 484 2.711547 AGCTTCCCCACAGAAAGTAACT 59.288 45.455 0.00 0.00 0.00 2.24
484 485 3.138468 AGCTTCCCCACAGAAAGTAACTT 59.862 43.478 0.00 0.00 0.00 2.66
485 486 3.253432 GCTTCCCCACAGAAAGTAACTTG 59.747 47.826 0.00 0.00 0.00 3.16
486 487 3.502123 TCCCCACAGAAAGTAACTTGG 57.498 47.619 0.00 0.00 0.00 3.61
487 488 2.781174 TCCCCACAGAAAGTAACTTGGT 59.219 45.455 0.00 0.00 0.00 3.67
488 489 2.884639 CCCCACAGAAAGTAACTTGGTG 59.115 50.000 0.00 0.00 0.00 4.17
489 490 3.551846 CCCACAGAAAGTAACTTGGTGT 58.448 45.455 0.00 0.00 0.00 4.16
490 491 3.951680 CCCACAGAAAGTAACTTGGTGTT 59.048 43.478 0.00 0.00 42.31 3.32
491 492 4.036380 CCCACAGAAAGTAACTTGGTGTTC 59.964 45.833 0.00 0.00 39.89 3.18
492 493 4.036380 CCACAGAAAGTAACTTGGTGTTCC 59.964 45.833 0.00 0.00 39.89 3.62
493 494 3.875134 ACAGAAAGTAACTTGGTGTTCCG 59.125 43.478 0.00 0.00 39.89 4.30
494 495 3.875134 CAGAAAGTAACTTGGTGTTCCGT 59.125 43.478 0.00 0.00 39.89 4.69
495 496 4.025145 CAGAAAGTAACTTGGTGTTCCGTC 60.025 45.833 0.00 0.00 39.89 4.79
496 497 3.832615 AAGTAACTTGGTGTTCCGTCT 57.167 42.857 0.00 0.00 39.89 4.18
497 498 3.382048 AGTAACTTGGTGTTCCGTCTC 57.618 47.619 0.00 0.00 39.89 3.36
498 499 2.963782 AGTAACTTGGTGTTCCGTCTCT 59.036 45.455 0.00 0.00 39.89 3.10
499 500 2.240493 AACTTGGTGTTCCGTCTCTG 57.760 50.000 0.00 0.00 32.63 3.35
500 501 0.393077 ACTTGGTGTTCCGTCTCTGG 59.607 55.000 0.00 0.00 36.30 3.86
501 502 0.951040 CTTGGTGTTCCGTCTCTGGC 60.951 60.000 0.00 0.00 36.30 4.85
502 503 1.691195 TTGGTGTTCCGTCTCTGGCA 61.691 55.000 0.00 0.00 36.30 4.92
503 504 1.296715 GGTGTTCCGTCTCTGGCAT 59.703 57.895 0.00 0.00 0.00 4.40
504 505 0.741221 GGTGTTCCGTCTCTGGCATC 60.741 60.000 0.00 0.00 0.00 3.91
505 506 0.741221 GTGTTCCGTCTCTGGCATCC 60.741 60.000 0.00 0.00 0.00 3.51
506 507 1.191489 TGTTCCGTCTCTGGCATCCA 61.191 55.000 0.00 0.00 0.00 3.41
507 508 0.741221 GTTCCGTCTCTGGCATCCAC 60.741 60.000 0.00 0.00 0.00 4.02
508 509 1.899437 TTCCGTCTCTGGCATCCACC 61.899 60.000 0.00 0.00 0.00 4.61
509 510 2.187946 CGTCTCTGGCATCCACCC 59.812 66.667 0.00 0.00 0.00 4.61
510 511 2.659063 CGTCTCTGGCATCCACCCA 61.659 63.158 0.00 0.00 0.00 4.51
511 512 1.685224 GTCTCTGGCATCCACCCAA 59.315 57.895 0.00 0.00 30.66 4.12
512 513 0.257039 GTCTCTGGCATCCACCCAAT 59.743 55.000 0.00 0.00 30.66 3.16
513 514 0.256752 TCTCTGGCATCCACCCAATG 59.743 55.000 0.00 0.00 30.66 2.82
514 515 0.033796 CTCTGGCATCCACCCAATGT 60.034 55.000 0.00 0.00 30.66 2.71
515 516 0.409092 TCTGGCATCCACCCAATGTT 59.591 50.000 0.00 0.00 30.66 2.71
516 517 0.819582 CTGGCATCCACCCAATGTTC 59.180 55.000 0.00 0.00 30.66 3.18
517 518 0.614415 TGGCATCCACCCAATGTTCC 60.614 55.000 0.00 0.00 0.00 3.62
539 540 1.149174 CCAATAGCCCCTGTGCGAT 59.851 57.895 0.00 0.00 36.02 4.58
611 612 0.928229 GTACGACCTATTTGCAGCCG 59.072 55.000 0.00 0.00 0.00 5.52
618 619 3.616219 ACCTATTTGCAGCCGACAATAA 58.384 40.909 0.00 0.00 0.00 1.40
690 691 5.766174 GGGTTAGTGGTTTGAGTTATGACAA 59.234 40.000 0.00 0.00 0.00 3.18
704 705 1.002624 GACAAGCGGGACCCATCAA 60.003 57.895 12.15 0.00 0.00 2.57
729 730 2.074967 ACATGAATGTGGGACCCGT 58.925 52.632 5.91 0.00 40.03 5.28
745 746 1.337728 CCCGTCACTTACTCACATGCA 60.338 52.381 0.00 0.00 0.00 3.96
782 783 0.178953 ATCCACATAAGCATGCCCCC 60.179 55.000 15.66 0.00 35.39 5.40
783 784 2.195567 CCACATAAGCATGCCCCCG 61.196 63.158 15.66 3.47 35.39 5.73
784 785 1.152984 CACATAAGCATGCCCCCGA 60.153 57.895 15.66 0.00 35.39 5.14
996 1047 2.995077 AAGATGCCCCGATTGCCCA 61.995 57.895 0.00 0.00 0.00 5.36
997 1048 2.203538 GATGCCCCGATTGCCCAT 60.204 61.111 0.00 0.00 0.00 4.00
1074 1125 2.223021 GCGCGAGTTCATCAAATGCTTA 60.223 45.455 12.10 0.00 0.00 3.09
1105 1452 2.070039 CCGGGGCAGGTTAGATCCA 61.070 63.158 0.00 0.00 0.00 3.41
1405 1758 9.305925 GAAGTGAAGTGTGAATTGAAGAAAATT 57.694 29.630 0.00 0.00 32.43 1.82
1415 1768 6.487331 TGAATTGAAGAAAATTGGCAAGCAAT 59.513 30.769 5.96 4.26 29.89 3.56
1661 2022 2.098614 TGTGTGAAGCAAAGCCTGAAA 58.901 42.857 0.00 0.00 0.00 2.69
1677 2038 7.756395 AGCCTGAAATCTGGTAATGATATTG 57.244 36.000 7.98 0.00 37.30 1.90
1808 2170 1.057275 TAACAGAGTGCACACCCCCA 61.057 55.000 21.04 0.00 0.00 4.96
1809 2171 1.719063 AACAGAGTGCACACCCCCAT 61.719 55.000 21.04 0.00 0.00 4.00
1820 2183 3.119137 GCACACCCCCATATTCAGAAAAC 60.119 47.826 0.00 0.00 0.00 2.43
1827 2191 5.163311 CCCCCATATTCAGAAAACCAAATCC 60.163 44.000 0.00 0.00 0.00 3.01
1829 2193 6.838612 CCCCATATTCAGAAAACCAAATCCTA 59.161 38.462 0.00 0.00 0.00 2.94
1842 2206 5.826643 ACCAAATCCTACTGCCAAATAGAA 58.173 37.500 0.00 0.00 0.00 2.10
1867 2231 2.617021 GGGCCGTGAGAAAATAACCAGA 60.617 50.000 0.00 0.00 0.00 3.86
1999 2368 4.364860 GCTTCGGCAAAGAAACCTTTAAA 58.635 39.130 2.49 0.00 41.33 1.52
2000 2369 4.208460 GCTTCGGCAAAGAAACCTTTAAAC 59.792 41.667 2.49 0.00 41.33 2.01
2329 2818 7.010160 AGGACCACAGAAATATTTCTTTTGGA 58.990 34.615 36.24 0.00 44.70 3.53
2432 2946 1.665169 GATACATGCATGCACACGTGA 59.335 47.619 25.37 7.94 34.49 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.603173 CGGCTCAAGCAAACTCTTGTTC 60.603 50.000 4.13 0.00 42.90 3.18
44 45 1.138859 CCAGTATCCATCACGAAGGCA 59.861 52.381 0.00 0.00 0.00 4.75
45 46 1.139058 ACCAGTATCCATCACGAAGGC 59.861 52.381 0.00 0.00 0.00 4.35
46 47 2.430694 TGACCAGTATCCATCACGAAGG 59.569 50.000 0.00 0.00 0.00 3.46
47 48 3.131223 AGTGACCAGTATCCATCACGAAG 59.869 47.826 0.00 0.00 44.95 3.79
48 49 3.096852 AGTGACCAGTATCCATCACGAA 58.903 45.455 0.00 0.00 44.95 3.85
49 50 2.735151 AGTGACCAGTATCCATCACGA 58.265 47.619 0.00 0.00 44.95 4.35
50 51 3.551046 GCTAGTGACCAGTATCCATCACG 60.551 52.174 0.00 0.00 44.95 4.35
51 52 3.639094 AGCTAGTGACCAGTATCCATCAC 59.361 47.826 0.00 0.00 41.47 3.06
52 53 3.916035 AGCTAGTGACCAGTATCCATCA 58.084 45.455 0.00 0.00 0.00 3.07
53 54 4.626042 CAAGCTAGTGACCAGTATCCATC 58.374 47.826 0.00 0.00 0.00 3.51
54 55 3.181461 GCAAGCTAGTGACCAGTATCCAT 60.181 47.826 0.00 0.00 0.00 3.41
55 56 2.168521 GCAAGCTAGTGACCAGTATCCA 59.831 50.000 0.00 0.00 0.00 3.41
56 57 2.483889 GGCAAGCTAGTGACCAGTATCC 60.484 54.545 0.00 0.00 0.00 2.59
57 58 2.168521 TGGCAAGCTAGTGACCAGTATC 59.831 50.000 0.00 0.00 0.00 2.24
58 59 2.187958 TGGCAAGCTAGTGACCAGTAT 58.812 47.619 0.00 0.00 0.00 2.12
59 60 1.639722 TGGCAAGCTAGTGACCAGTA 58.360 50.000 0.00 0.00 0.00 2.74
60 61 0.987294 ATGGCAAGCTAGTGACCAGT 59.013 50.000 0.00 0.00 33.03 4.00
61 62 1.065926 TGATGGCAAGCTAGTGACCAG 60.066 52.381 0.00 0.00 33.03 4.00
62 63 0.983467 TGATGGCAAGCTAGTGACCA 59.017 50.000 0.00 0.00 34.28 4.02
63 64 2.113860 TTGATGGCAAGCTAGTGACC 57.886 50.000 0.00 0.00 0.00 4.02
64 65 4.151335 CGATATTGATGGCAAGCTAGTGAC 59.849 45.833 0.00 0.00 37.45 3.67
65 66 4.039124 TCGATATTGATGGCAAGCTAGTGA 59.961 41.667 0.00 0.00 37.45 3.41
66 67 4.309933 TCGATATTGATGGCAAGCTAGTG 58.690 43.478 0.00 0.00 37.45 2.74
67 68 4.607293 TCGATATTGATGGCAAGCTAGT 57.393 40.909 0.00 0.00 37.45 2.57
68 69 4.993584 AGTTCGATATTGATGGCAAGCTAG 59.006 41.667 0.00 0.00 37.45 3.42
69 70 4.751600 CAGTTCGATATTGATGGCAAGCTA 59.248 41.667 0.00 0.00 37.45 3.32
70 71 3.562973 CAGTTCGATATTGATGGCAAGCT 59.437 43.478 0.00 0.00 37.45 3.74
71 72 3.561310 TCAGTTCGATATTGATGGCAAGC 59.439 43.478 0.00 0.00 37.45 4.01
72 73 5.295292 ACTTCAGTTCGATATTGATGGCAAG 59.705 40.000 0.00 0.00 37.45 4.01
73 74 5.185454 ACTTCAGTTCGATATTGATGGCAA 58.815 37.500 0.00 0.00 38.60 4.52
74 75 4.769688 ACTTCAGTTCGATATTGATGGCA 58.230 39.130 0.00 0.00 0.00 4.92
75 76 5.107298 GCTACTTCAGTTCGATATTGATGGC 60.107 44.000 0.00 0.00 0.00 4.40
76 77 5.406780 GGCTACTTCAGTTCGATATTGATGG 59.593 44.000 0.00 0.00 0.00 3.51
77 78 5.985530 TGGCTACTTCAGTTCGATATTGATG 59.014 40.000 0.00 0.00 0.00 3.07
78 79 5.986135 GTGGCTACTTCAGTTCGATATTGAT 59.014 40.000 0.00 0.00 0.00 2.57
79 80 5.348986 GTGGCTACTTCAGTTCGATATTGA 58.651 41.667 0.00 0.00 0.00 2.57
80 81 4.508124 GGTGGCTACTTCAGTTCGATATTG 59.492 45.833 0.00 0.00 0.00 1.90
81 82 4.406003 AGGTGGCTACTTCAGTTCGATATT 59.594 41.667 0.00 0.00 0.00 1.28
82 83 3.961408 AGGTGGCTACTTCAGTTCGATAT 59.039 43.478 0.00 0.00 0.00 1.63
83 84 3.362706 AGGTGGCTACTTCAGTTCGATA 58.637 45.455 0.00 0.00 0.00 2.92
84 85 2.180276 AGGTGGCTACTTCAGTTCGAT 58.820 47.619 0.00 0.00 0.00 3.59
85 86 1.629043 AGGTGGCTACTTCAGTTCGA 58.371 50.000 0.00 0.00 0.00 3.71
86 87 2.338500 GAAGGTGGCTACTTCAGTTCG 58.662 52.381 14.11 0.00 42.92 3.95
87 88 2.038557 TGGAAGGTGGCTACTTCAGTTC 59.961 50.000 18.57 6.49 44.69 3.01
88 89 2.054799 TGGAAGGTGGCTACTTCAGTT 58.945 47.619 18.57 0.00 44.69 3.16
89 90 1.729586 TGGAAGGTGGCTACTTCAGT 58.270 50.000 18.57 0.00 44.69 3.41
90 91 2.859165 TTGGAAGGTGGCTACTTCAG 57.141 50.000 18.57 0.00 44.69 3.02
91 92 3.330701 AGATTTGGAAGGTGGCTACTTCA 59.669 43.478 18.57 6.83 44.69 3.02
92 93 3.691609 CAGATTTGGAAGGTGGCTACTTC 59.308 47.826 11.60 11.60 42.73 3.01
93 94 3.330701 TCAGATTTGGAAGGTGGCTACTT 59.669 43.478 0.00 0.00 0.00 2.24
94 95 2.912956 TCAGATTTGGAAGGTGGCTACT 59.087 45.455 0.00 0.00 0.00 2.57
95 96 3.010420 GTCAGATTTGGAAGGTGGCTAC 58.990 50.000 0.00 0.00 0.00 3.58
96 97 2.026262 GGTCAGATTTGGAAGGTGGCTA 60.026 50.000 0.00 0.00 0.00 3.93
97 98 1.272147 GGTCAGATTTGGAAGGTGGCT 60.272 52.381 0.00 0.00 0.00 4.75
98 99 1.177401 GGTCAGATTTGGAAGGTGGC 58.823 55.000 0.00 0.00 0.00 5.01
99 100 2.558359 GTTGGTCAGATTTGGAAGGTGG 59.442 50.000 0.00 0.00 0.00 4.61
100 101 3.004734 GTGTTGGTCAGATTTGGAAGGTG 59.995 47.826 0.00 0.00 0.00 4.00
101 102 3.222603 GTGTTGGTCAGATTTGGAAGGT 58.777 45.455 0.00 0.00 0.00 3.50
102 103 2.558359 GGTGTTGGTCAGATTTGGAAGG 59.442 50.000 0.00 0.00 0.00 3.46
103 104 3.221771 TGGTGTTGGTCAGATTTGGAAG 58.778 45.455 0.00 0.00 0.00 3.46
104 105 3.221771 CTGGTGTTGGTCAGATTTGGAA 58.778 45.455 0.00 0.00 33.11 3.53
105 106 2.862541 CTGGTGTTGGTCAGATTTGGA 58.137 47.619 0.00 0.00 33.11 3.53
106 107 1.270550 GCTGGTGTTGGTCAGATTTGG 59.729 52.381 0.00 0.00 33.11 3.28
107 108 1.955778 TGCTGGTGTTGGTCAGATTTG 59.044 47.619 0.00 0.00 33.11 2.32
108 109 1.956477 GTGCTGGTGTTGGTCAGATTT 59.044 47.619 0.00 0.00 33.11 2.17
109 110 1.133823 TGTGCTGGTGTTGGTCAGATT 60.134 47.619 0.00 0.00 33.11 2.40
110 111 0.473755 TGTGCTGGTGTTGGTCAGAT 59.526 50.000 0.00 0.00 33.11 2.90
111 112 0.473755 ATGTGCTGGTGTTGGTCAGA 59.526 50.000 0.00 0.00 33.11 3.27
112 113 1.321474 AATGTGCTGGTGTTGGTCAG 58.679 50.000 0.00 0.00 0.00 3.51
113 114 2.226330 GTAATGTGCTGGTGTTGGTCA 58.774 47.619 0.00 0.00 0.00 4.02
114 115 1.539827 GGTAATGTGCTGGTGTTGGTC 59.460 52.381 0.00 0.00 0.00 4.02
115 116 1.133637 TGGTAATGTGCTGGTGTTGGT 60.134 47.619 0.00 0.00 0.00 3.67
116 117 1.614996 TGGTAATGTGCTGGTGTTGG 58.385 50.000 0.00 0.00 0.00 3.77
117 118 2.159531 CGATGGTAATGTGCTGGTGTTG 60.160 50.000 0.00 0.00 0.00 3.33
118 119 2.083774 CGATGGTAATGTGCTGGTGTT 58.916 47.619 0.00 0.00 0.00 3.32
119 120 1.737838 CGATGGTAATGTGCTGGTGT 58.262 50.000 0.00 0.00 0.00 4.16
120 121 0.378257 GCGATGGTAATGTGCTGGTG 59.622 55.000 0.00 0.00 0.00 4.17
121 122 0.035534 TGCGATGGTAATGTGCTGGT 60.036 50.000 0.00 0.00 0.00 4.00
122 123 1.064505 CTTGCGATGGTAATGTGCTGG 59.935 52.381 0.00 0.00 0.00 4.85
123 124 2.009051 TCTTGCGATGGTAATGTGCTG 58.991 47.619 0.00 0.00 0.00 4.41
124 125 2.401583 TCTTGCGATGGTAATGTGCT 57.598 45.000 0.00 0.00 0.00 4.40
125 126 3.621794 GATTCTTGCGATGGTAATGTGC 58.378 45.455 0.00 0.00 0.00 4.57
126 127 3.555547 TCGATTCTTGCGATGGTAATGTG 59.444 43.478 0.00 0.00 32.09 3.21
127 128 3.555956 GTCGATTCTTGCGATGGTAATGT 59.444 43.478 0.00 0.00 40.19 2.71
128 129 3.059597 GGTCGATTCTTGCGATGGTAATG 60.060 47.826 0.00 0.00 40.19 1.90
129 130 3.131396 GGTCGATTCTTGCGATGGTAAT 58.869 45.455 0.00 0.00 40.19 1.89
130 131 2.093921 TGGTCGATTCTTGCGATGGTAA 60.094 45.455 0.00 0.00 40.19 2.85
131 132 1.478916 TGGTCGATTCTTGCGATGGTA 59.521 47.619 0.00 0.00 40.19 3.25
132 133 0.249120 TGGTCGATTCTTGCGATGGT 59.751 50.000 0.00 0.00 40.19 3.55
133 134 0.652592 GTGGTCGATTCTTGCGATGG 59.347 55.000 0.00 0.00 40.19 3.51
134 135 0.652592 GGTGGTCGATTCTTGCGATG 59.347 55.000 0.00 0.00 40.19 3.84
135 136 0.249120 TGGTGGTCGATTCTTGCGAT 59.751 50.000 0.00 0.00 40.19 4.58
136 137 0.669318 GTGGTGGTCGATTCTTGCGA 60.669 55.000 0.00 0.00 35.08 5.10
137 138 0.948623 TGTGGTGGTCGATTCTTGCG 60.949 55.000 0.00 0.00 0.00 4.85
138 139 1.453155 ATGTGGTGGTCGATTCTTGC 58.547 50.000 0.00 0.00 0.00 4.01
139 140 2.420022 GGAATGTGGTGGTCGATTCTTG 59.580 50.000 0.00 0.00 0.00 3.02
140 141 2.039746 TGGAATGTGGTGGTCGATTCTT 59.960 45.455 0.00 0.00 0.00 2.52
141 142 1.628340 TGGAATGTGGTGGTCGATTCT 59.372 47.619 0.00 0.00 0.00 2.40
142 143 2.107950 TGGAATGTGGTGGTCGATTC 57.892 50.000 0.00 0.00 0.00 2.52
143 144 2.577606 TTGGAATGTGGTGGTCGATT 57.422 45.000 0.00 0.00 0.00 3.34
144 145 2.806945 ATTGGAATGTGGTGGTCGAT 57.193 45.000 0.00 0.00 0.00 3.59
145 146 2.577606 AATTGGAATGTGGTGGTCGA 57.422 45.000 0.00 0.00 0.00 4.20
146 147 3.658757 AAAATTGGAATGTGGTGGTCG 57.341 42.857 0.00 0.00 0.00 4.79
147 148 4.954875 TCAAAAATTGGAATGTGGTGGTC 58.045 39.130 0.00 0.00 0.00 4.02
148 149 5.565455 ATCAAAAATTGGAATGTGGTGGT 57.435 34.783 0.00 0.00 0.00 4.16
149 150 6.371271 GGTTATCAAAAATTGGAATGTGGTGG 59.629 38.462 0.00 0.00 0.00 4.61
150 151 7.160726 AGGTTATCAAAAATTGGAATGTGGTG 58.839 34.615 0.00 0.00 0.00 4.17
151 152 7.016072 TGAGGTTATCAAAAATTGGAATGTGGT 59.984 33.333 0.00 0.00 34.02 4.16
152 153 7.331687 GTGAGGTTATCAAAAATTGGAATGTGG 59.668 37.037 0.00 0.00 40.43 4.17
153 154 7.331687 GGTGAGGTTATCAAAAATTGGAATGTG 59.668 37.037 0.00 0.00 40.43 3.21
154 155 7.016072 TGGTGAGGTTATCAAAAATTGGAATGT 59.984 33.333 0.00 0.00 40.43 2.71
155 156 7.385267 TGGTGAGGTTATCAAAAATTGGAATG 58.615 34.615 0.00 0.00 40.43 2.67
156 157 7.552050 TGGTGAGGTTATCAAAAATTGGAAT 57.448 32.000 0.00 0.00 40.43 3.01
157 158 6.985653 TGGTGAGGTTATCAAAAATTGGAA 57.014 33.333 0.00 0.00 40.43 3.53
158 159 6.985653 TTGGTGAGGTTATCAAAAATTGGA 57.014 33.333 0.00 0.00 40.43 3.53
159 160 7.171337 CAGTTTGGTGAGGTTATCAAAAATTGG 59.829 37.037 0.00 0.00 40.43 3.16
160 161 7.710475 ACAGTTTGGTGAGGTTATCAAAAATTG 59.290 33.333 0.00 7.58 40.43 2.32
161 162 7.791029 ACAGTTTGGTGAGGTTATCAAAAATT 58.209 30.769 0.00 0.00 40.43 1.82
162 163 7.360113 ACAGTTTGGTGAGGTTATCAAAAAT 57.640 32.000 0.00 0.00 40.43 1.82
163 164 6.783708 ACAGTTTGGTGAGGTTATCAAAAA 57.216 33.333 0.00 0.00 40.43 1.94
164 165 6.829298 TGTACAGTTTGGTGAGGTTATCAAAA 59.171 34.615 0.00 0.00 40.43 2.44
165 166 6.358178 TGTACAGTTTGGTGAGGTTATCAAA 58.642 36.000 0.00 0.00 40.43 2.69
166 167 5.931294 TGTACAGTTTGGTGAGGTTATCAA 58.069 37.500 0.00 0.00 40.43 2.57
167 168 5.554437 TGTACAGTTTGGTGAGGTTATCA 57.446 39.130 0.00 0.00 34.79 2.15
168 169 8.556213 TTAATGTACAGTTTGGTGAGGTTATC 57.444 34.615 0.00 0.00 0.00 1.75
169 170 8.380099 TCTTAATGTACAGTTTGGTGAGGTTAT 58.620 33.333 0.00 0.00 0.00 1.89
170 171 7.737869 TCTTAATGTACAGTTTGGTGAGGTTA 58.262 34.615 0.00 0.00 0.00 2.85
171 172 6.597562 TCTTAATGTACAGTTTGGTGAGGTT 58.402 36.000 0.00 0.00 0.00 3.50
172 173 6.182507 TCTTAATGTACAGTTTGGTGAGGT 57.817 37.500 0.00 0.00 0.00 3.85
173 174 8.830580 CATATCTTAATGTACAGTTTGGTGAGG 58.169 37.037 0.00 0.00 0.00 3.86
174 175 8.338259 GCATATCTTAATGTACAGTTTGGTGAG 58.662 37.037 0.00 0.00 0.00 3.51
175 176 7.826744 TGCATATCTTAATGTACAGTTTGGTGA 59.173 33.333 0.00 0.00 0.00 4.02
176 177 7.984391 TGCATATCTTAATGTACAGTTTGGTG 58.016 34.615 0.00 0.00 0.00 4.17
177 178 8.458843 GTTGCATATCTTAATGTACAGTTTGGT 58.541 33.333 0.00 0.00 0.00 3.67
178 179 7.915397 GGTTGCATATCTTAATGTACAGTTTGG 59.085 37.037 0.00 0.00 0.00 3.28
179 180 7.639850 CGGTTGCATATCTTAATGTACAGTTTG 59.360 37.037 0.00 0.00 0.00 2.93
180 181 7.201696 CCGGTTGCATATCTTAATGTACAGTTT 60.202 37.037 0.00 0.00 0.00 2.66
181 182 6.260050 CCGGTTGCATATCTTAATGTACAGTT 59.740 38.462 0.00 0.00 0.00 3.16
182 183 5.758296 CCGGTTGCATATCTTAATGTACAGT 59.242 40.000 0.33 0.07 0.00 3.55
183 184 5.334105 GCCGGTTGCATATCTTAATGTACAG 60.334 44.000 1.90 0.00 40.77 2.74
184 185 4.513692 GCCGGTTGCATATCTTAATGTACA 59.486 41.667 1.90 0.00 40.77 2.90
185 186 5.030874 GCCGGTTGCATATCTTAATGTAC 57.969 43.478 1.90 0.00 40.77 2.90
199 200 0.729140 CGAGTTGAATTGCCGGTTGC 60.729 55.000 1.90 0.00 41.77 4.17
200 201 0.109781 CCGAGTTGAATTGCCGGTTG 60.110 55.000 1.90 0.00 35.83 3.77
201 202 2.253513 CCGAGTTGAATTGCCGGTT 58.746 52.632 1.90 0.00 35.83 4.44
202 203 3.981308 CCGAGTTGAATTGCCGGT 58.019 55.556 1.90 0.00 35.83 5.28
203 204 1.663695 ATACCGAGTTGAATTGCCGG 58.336 50.000 0.00 0.00 45.09 6.13
204 205 3.126171 TGAAATACCGAGTTGAATTGCCG 59.874 43.478 0.00 0.00 0.00 5.69
205 206 4.695217 TGAAATACCGAGTTGAATTGCC 57.305 40.909 0.00 0.00 0.00 4.52
206 207 5.095490 CCTTGAAATACCGAGTTGAATTGC 58.905 41.667 0.00 0.00 0.00 3.56
207 208 6.314784 GTCCTTGAAATACCGAGTTGAATTG 58.685 40.000 0.00 0.00 0.00 2.32
208 209 5.414765 GGTCCTTGAAATACCGAGTTGAATT 59.585 40.000 0.00 0.00 0.00 2.17
209 210 4.941873 GGTCCTTGAAATACCGAGTTGAAT 59.058 41.667 0.00 0.00 0.00 2.57
210 211 4.202377 TGGTCCTTGAAATACCGAGTTGAA 60.202 41.667 0.00 0.00 35.98 2.69
211 212 3.325425 TGGTCCTTGAAATACCGAGTTGA 59.675 43.478 0.00 0.00 35.98 3.18
212 213 3.670625 TGGTCCTTGAAATACCGAGTTG 58.329 45.455 0.00 0.00 35.98 3.16
213 214 4.360951 TTGGTCCTTGAAATACCGAGTT 57.639 40.909 0.00 0.00 35.98 3.01
214 215 4.070009 GTTTGGTCCTTGAAATACCGAGT 58.930 43.478 0.00 0.00 35.98 4.18
215 216 3.439129 GGTTTGGTCCTTGAAATACCGAG 59.561 47.826 0.00 0.00 35.98 4.63
216 217 3.073356 AGGTTTGGTCCTTGAAATACCGA 59.927 43.478 0.00 0.00 35.98 4.69
217 218 3.418047 AGGTTTGGTCCTTGAAATACCG 58.582 45.455 0.00 0.00 35.98 4.02
218 219 3.439129 CGAGGTTTGGTCCTTGAAATACC 59.561 47.826 0.00 0.00 40.48 2.73
219 220 3.119955 GCGAGGTTTGGTCCTTGAAATAC 60.120 47.826 4.37 0.00 40.48 1.89
220 221 3.078837 GCGAGGTTTGGTCCTTGAAATA 58.921 45.455 4.37 0.00 40.48 1.40
221 222 1.886542 GCGAGGTTTGGTCCTTGAAAT 59.113 47.619 4.37 0.00 40.48 2.17
222 223 1.133915 AGCGAGGTTTGGTCCTTGAAA 60.134 47.619 4.37 0.00 40.48 2.69
223 224 0.472471 AGCGAGGTTTGGTCCTTGAA 59.528 50.000 4.37 0.00 40.48 2.69
224 225 0.472471 AAGCGAGGTTTGGTCCTTGA 59.528 50.000 4.37 0.00 40.48 3.02
225 226 1.266989 GAAAGCGAGGTTTGGTCCTTG 59.733 52.381 4.92 0.00 40.86 3.61
226 227 1.605753 GAAAGCGAGGTTTGGTCCTT 58.394 50.000 4.92 0.00 38.02 3.36
227 228 0.602905 CGAAAGCGAGGTTTGGTCCT 60.603 55.000 4.92 0.00 40.82 3.85
228 229 0.883370 ACGAAAGCGAGGTTTGGTCC 60.883 55.000 9.08 0.00 41.64 4.46
229 230 1.725164 CTACGAAAGCGAGGTTTGGTC 59.275 52.381 16.25 0.00 41.64 4.02
230 231 1.069668 ACTACGAAAGCGAGGTTTGGT 59.930 47.619 16.79 16.79 41.64 3.67
231 232 1.725164 GACTACGAAAGCGAGGTTTGG 59.275 52.381 4.92 6.61 41.64 3.28
232 233 1.725164 GGACTACGAAAGCGAGGTTTG 59.275 52.381 4.92 1.32 41.64 2.93
233 234 1.617357 AGGACTACGAAAGCGAGGTTT 59.383 47.619 0.00 0.00 41.64 3.27
234 235 1.201880 GAGGACTACGAAAGCGAGGTT 59.798 52.381 0.00 0.00 41.64 3.50
235 236 0.810016 GAGGACTACGAAAGCGAGGT 59.190 55.000 0.00 0.00 41.64 3.85
236 237 0.100861 GGAGGACTACGAAAGCGAGG 59.899 60.000 0.00 0.00 41.64 4.63
237 238 0.809385 TGGAGGACTACGAAAGCGAG 59.191 55.000 0.00 0.00 41.64 5.03
238 239 1.404391 GATGGAGGACTACGAAAGCGA 59.596 52.381 0.00 0.00 41.64 4.93
239 240 1.134367 TGATGGAGGACTACGAAAGCG 59.866 52.381 0.00 0.00 44.79 4.68
240 241 2.961526 TGATGGAGGACTACGAAAGC 57.038 50.000 0.00 0.00 0.00 3.51
241 242 3.384789 TGGATGATGGAGGACTACGAAAG 59.615 47.826 0.00 0.00 0.00 2.62
242 243 3.371034 TGGATGATGGAGGACTACGAAA 58.629 45.455 0.00 0.00 0.00 3.46
243 244 2.959030 CTGGATGATGGAGGACTACGAA 59.041 50.000 0.00 0.00 0.00 3.85
244 245 2.174854 TCTGGATGATGGAGGACTACGA 59.825 50.000 0.00 0.00 0.00 3.43
245 246 2.587522 TCTGGATGATGGAGGACTACG 58.412 52.381 0.00 0.00 0.00 3.51
246 247 6.194235 AGATATCTGGATGATGGAGGACTAC 58.806 44.000 3.89 0.00 36.65 2.73
247 248 6.414586 AGATATCTGGATGATGGAGGACTA 57.585 41.667 3.89 0.00 36.65 2.59
248 249 5.288205 AGATATCTGGATGATGGAGGACT 57.712 43.478 3.89 0.00 36.65 3.85
249 250 6.838090 TCATAGATATCTGGATGATGGAGGAC 59.162 42.308 15.79 0.00 36.65 3.85
250 251 6.989894 TCATAGATATCTGGATGATGGAGGA 58.010 40.000 15.79 0.00 36.65 3.71
251 252 7.859026 ATCATAGATATCTGGATGATGGAGG 57.141 40.000 22.17 2.02 37.58 4.30
282 283 3.674955 GCATGTGCAGCTTCAATGATGAA 60.675 43.478 10.82 0.00 41.05 2.57
283 284 2.159296 GCATGTGCAGCTTCAATGATGA 60.159 45.455 10.82 0.00 41.59 2.92
284 285 2.193447 GCATGTGCAGCTTCAATGATG 58.807 47.619 10.82 5.30 41.59 3.07
285 286 1.136305 GGCATGTGCAGCTTCAATGAT 59.864 47.619 7.36 0.00 44.36 2.45
286 287 0.528924 GGCATGTGCAGCTTCAATGA 59.471 50.000 7.36 0.00 44.36 2.57
287 288 0.800683 CGGCATGTGCAGCTTCAATG 60.801 55.000 7.36 0.00 44.36 2.82
288 289 0.961857 TCGGCATGTGCAGCTTCAAT 60.962 50.000 7.36 0.00 44.36 2.57
289 290 1.579964 CTCGGCATGTGCAGCTTCAA 61.580 55.000 7.36 0.00 44.36 2.69
290 291 2.032376 TCGGCATGTGCAGCTTCA 59.968 55.556 7.36 0.00 44.36 3.02
291 292 2.789917 CTCGGCATGTGCAGCTTC 59.210 61.111 7.36 0.00 44.36 3.86
292 293 3.437795 GCTCGGCATGTGCAGCTT 61.438 61.111 7.36 0.00 44.36 3.74
293 294 4.710167 TGCTCGGCATGTGCAGCT 62.710 61.111 15.46 0.00 41.83 4.24
302 303 0.886043 GATGTATGGCATGCTCGGCA 60.886 55.000 18.92 12.24 46.50 5.69
303 304 0.604780 AGATGTATGGCATGCTCGGC 60.605 55.000 18.92 6.77 38.06 5.54
304 305 1.270465 TGAGATGTATGGCATGCTCGG 60.270 52.381 18.92 0.00 38.06 4.63
305 306 2.159327 TGAGATGTATGGCATGCTCG 57.841 50.000 18.92 0.00 38.06 5.03
306 307 3.628942 TGTTTGAGATGTATGGCATGCTC 59.371 43.478 18.92 13.80 38.06 4.26
307 308 3.623703 TGTTTGAGATGTATGGCATGCT 58.376 40.909 18.92 0.24 38.06 3.79
308 309 3.628942 TCTGTTTGAGATGTATGGCATGC 59.371 43.478 9.90 9.90 38.06 4.06
309 310 4.637091 TGTCTGTTTGAGATGTATGGCATG 59.363 41.667 10.98 0.00 38.06 4.06
310 311 4.847198 TGTCTGTTTGAGATGTATGGCAT 58.153 39.130 4.88 4.88 41.24 4.40
311 312 4.284829 TGTCTGTTTGAGATGTATGGCA 57.715 40.909 0.00 0.00 31.63 4.92
312 313 4.437930 GCTTGTCTGTTTGAGATGTATGGC 60.438 45.833 0.00 0.00 31.63 4.40
313 314 4.696877 TGCTTGTCTGTTTGAGATGTATGG 59.303 41.667 0.00 0.00 31.63 2.74
314 315 5.625251 GTGCTTGTCTGTTTGAGATGTATG 58.375 41.667 0.00 0.00 31.63 2.39
315 316 4.389992 CGTGCTTGTCTGTTTGAGATGTAT 59.610 41.667 0.00 0.00 31.63 2.29
316 317 3.740832 CGTGCTTGTCTGTTTGAGATGTA 59.259 43.478 0.00 0.00 31.63 2.29
317 318 2.545526 CGTGCTTGTCTGTTTGAGATGT 59.454 45.455 0.00 0.00 31.63 3.06
318 319 2.096069 CCGTGCTTGTCTGTTTGAGATG 60.096 50.000 0.00 0.00 31.63 2.90
319 320 2.146342 CCGTGCTTGTCTGTTTGAGAT 58.854 47.619 0.00 0.00 31.63 2.75
320 321 1.134521 ACCGTGCTTGTCTGTTTGAGA 60.135 47.619 0.00 0.00 0.00 3.27
321 322 1.261619 GACCGTGCTTGTCTGTTTGAG 59.738 52.381 0.00 0.00 0.00 3.02
322 323 1.295792 GACCGTGCTTGTCTGTTTGA 58.704 50.000 0.00 0.00 0.00 2.69
323 324 1.003545 CTGACCGTGCTTGTCTGTTTG 60.004 52.381 0.00 0.00 33.83 2.93
324 325 1.134521 TCTGACCGTGCTTGTCTGTTT 60.135 47.619 0.00 0.00 34.45 2.83
325 326 0.464036 TCTGACCGTGCTTGTCTGTT 59.536 50.000 0.00 0.00 34.45 3.16
326 327 0.464036 TTCTGACCGTGCTTGTCTGT 59.536 50.000 0.00 0.00 34.45 3.41
327 328 1.261619 GTTTCTGACCGTGCTTGTCTG 59.738 52.381 0.00 0.00 33.83 3.51
328 329 1.134521 TGTTTCTGACCGTGCTTGTCT 60.135 47.619 0.00 0.00 33.83 3.41
329 330 1.295792 TGTTTCTGACCGTGCTTGTC 58.704 50.000 0.00 0.00 0.00 3.18
330 331 1.400494 GTTGTTTCTGACCGTGCTTGT 59.600 47.619 0.00 0.00 0.00 3.16
331 332 1.670811 AGTTGTTTCTGACCGTGCTTG 59.329 47.619 0.00 0.00 0.00 4.01
332 333 1.670811 CAGTTGTTTCTGACCGTGCTT 59.329 47.619 0.00 0.00 37.61 3.91
333 334 1.299541 CAGTTGTTTCTGACCGTGCT 58.700 50.000 0.00 0.00 37.61 4.40
334 335 0.307760 CCAGTTGTTTCTGACCGTGC 59.692 55.000 0.00 0.00 37.61 5.34
335 336 1.330521 CACCAGTTGTTTCTGACCGTG 59.669 52.381 0.00 0.00 37.61 4.94
336 337 1.065709 ACACCAGTTGTTTCTGACCGT 60.066 47.619 0.00 0.00 33.09 4.83
337 338 1.663695 ACACCAGTTGTTTCTGACCG 58.336 50.000 0.00 0.00 33.09 4.79
338 339 3.808174 GTCTACACCAGTTGTTTCTGACC 59.192 47.826 0.00 0.00 39.91 4.02
339 340 4.439057 TGTCTACACCAGTTGTTTCTGAC 58.561 43.478 0.00 0.00 39.91 3.51
340 341 4.746535 TGTCTACACCAGTTGTTTCTGA 57.253 40.909 0.00 0.00 39.91 3.27
341 342 6.377327 AAATGTCTACACCAGTTGTTTCTG 57.623 37.500 0.00 0.00 39.91 3.02
342 343 6.680378 GCAAAATGTCTACACCAGTTGTTTCT 60.680 38.462 0.00 0.00 39.91 2.52
343 344 5.458779 GCAAAATGTCTACACCAGTTGTTTC 59.541 40.000 0.00 0.00 39.91 2.78
344 345 5.348164 GCAAAATGTCTACACCAGTTGTTT 58.652 37.500 0.00 0.00 39.91 2.83
345 346 4.497340 CGCAAAATGTCTACACCAGTTGTT 60.497 41.667 0.00 0.00 39.91 2.83
346 347 3.003275 CGCAAAATGTCTACACCAGTTGT 59.997 43.478 0.00 0.00 42.84 3.32
347 348 3.554524 CGCAAAATGTCTACACCAGTTG 58.445 45.455 0.00 0.00 0.00 3.16
348 349 2.552315 CCGCAAAATGTCTACACCAGTT 59.448 45.455 0.00 0.00 0.00 3.16
349 350 2.151202 CCGCAAAATGTCTACACCAGT 58.849 47.619 0.00 0.00 0.00 4.00
350 351 2.422597 TCCGCAAAATGTCTACACCAG 58.577 47.619 0.00 0.00 0.00 4.00
351 352 2.550606 GTTCCGCAAAATGTCTACACCA 59.449 45.455 0.00 0.00 0.00 4.17
352 353 2.550606 TGTTCCGCAAAATGTCTACACC 59.449 45.455 0.00 0.00 0.00 4.16
353 354 3.889196 TGTTCCGCAAAATGTCTACAC 57.111 42.857 0.00 0.00 0.00 2.90
354 355 3.880490 AGTTGTTCCGCAAAATGTCTACA 59.120 39.130 0.00 0.00 39.03 2.74
355 356 4.024387 TGAGTTGTTCCGCAAAATGTCTAC 60.024 41.667 0.00 0.00 39.03 2.59
356 357 4.130857 TGAGTTGTTCCGCAAAATGTCTA 58.869 39.130 0.00 0.00 39.03 2.59
357 358 2.948979 TGAGTTGTTCCGCAAAATGTCT 59.051 40.909 0.00 0.00 39.03 3.41
358 359 3.300009 CTGAGTTGTTCCGCAAAATGTC 58.700 45.455 0.00 0.00 39.03 3.06
359 360 2.543653 GCTGAGTTGTTCCGCAAAATGT 60.544 45.455 0.00 0.00 39.03 2.71
360 361 2.053627 GCTGAGTTGTTCCGCAAAATG 58.946 47.619 0.00 0.00 39.03 2.32
361 362 1.956477 AGCTGAGTTGTTCCGCAAAAT 59.044 42.857 0.00 0.00 38.38 1.82
362 363 1.065401 CAGCTGAGTTGTTCCGCAAAA 59.935 47.619 8.42 0.00 38.38 2.44
363 364 0.662619 CAGCTGAGTTGTTCCGCAAA 59.337 50.000 8.42 0.00 38.38 3.68
364 365 0.463654 ACAGCTGAGTTGTTCCGCAA 60.464 50.000 23.35 0.00 38.38 4.85
365 366 1.146041 ACAGCTGAGTTGTTCCGCA 59.854 52.632 23.35 0.00 38.38 5.69
366 367 1.571460 CACAGCTGAGTTGTTCCGC 59.429 57.895 23.35 0.00 36.39 5.54
367 368 0.532862 ACCACAGCTGAGTTGTTCCG 60.533 55.000 23.35 0.00 0.00 4.30
368 369 0.947244 CACCACAGCTGAGTTGTTCC 59.053 55.000 23.35 0.00 0.00 3.62
369 370 1.599542 GACACCACAGCTGAGTTGTTC 59.400 52.381 23.35 7.97 0.00 3.18
370 371 1.668419 GACACCACAGCTGAGTTGTT 58.332 50.000 23.35 2.06 0.00 2.83
371 372 0.530650 CGACACCACAGCTGAGTTGT 60.531 55.000 23.35 18.13 0.00 3.32
372 373 0.249447 TCGACACCACAGCTGAGTTG 60.249 55.000 23.35 14.46 0.00 3.16
373 374 0.464036 TTCGACACCACAGCTGAGTT 59.536 50.000 23.35 0.00 0.00 3.01
374 375 0.681733 ATTCGACACCACAGCTGAGT 59.318 50.000 23.35 14.57 0.00 3.41
375 376 2.263077 GTATTCGACACCACAGCTGAG 58.737 52.381 23.35 13.32 0.00 3.35
376 377 1.067142 GGTATTCGACACCACAGCTGA 60.067 52.381 23.35 0.00 36.01 4.26
377 378 1.337728 TGGTATTCGACACCACAGCTG 60.338 52.381 13.48 13.48 41.17 4.24
378 379 0.973632 TGGTATTCGACACCACAGCT 59.026 50.000 12.94 0.00 41.17 4.24
379 380 3.525619 TGGTATTCGACACCACAGC 57.474 52.632 12.94 0.00 41.17 4.40
384 385 7.041372 AGCAACATTATAATGGTATTCGACACC 60.041 37.037 25.45 8.21 40.70 4.16
385 386 7.861630 AGCAACATTATAATGGTATTCGACAC 58.138 34.615 25.45 5.87 40.70 3.67
386 387 8.341903 CAAGCAACATTATAATGGTATTCGACA 58.658 33.333 25.45 0.00 40.70 4.35
387 388 8.342634 ACAAGCAACATTATAATGGTATTCGAC 58.657 33.333 25.45 8.45 40.70 4.20
388 389 8.341903 CACAAGCAACATTATAATGGTATTCGA 58.658 33.333 25.45 0.00 40.70 3.71
389 390 7.113404 GCACAAGCAACATTATAATGGTATTCG 59.887 37.037 25.45 11.28 39.65 3.34
390 391 8.137437 AGCACAAGCAACATTATAATGGTATTC 58.863 33.333 25.45 13.64 45.49 1.75
391 392 8.010733 AGCACAAGCAACATTATAATGGTATT 57.989 30.769 25.45 15.96 45.49 1.89
392 393 7.503566 AGAGCACAAGCAACATTATAATGGTAT 59.496 33.333 25.45 11.46 45.49 2.73
393 394 6.828273 AGAGCACAAGCAACATTATAATGGTA 59.172 34.615 25.45 0.00 45.49 3.25
394 395 5.653769 AGAGCACAAGCAACATTATAATGGT 59.346 36.000 25.45 18.91 45.49 3.55
395 396 5.975344 CAGAGCACAAGCAACATTATAATGG 59.025 40.000 25.45 12.45 45.49 3.16
396 397 6.788243 TCAGAGCACAAGCAACATTATAATG 58.212 36.000 21.42 21.42 45.49 1.90
397 398 7.121759 ACTTCAGAGCACAAGCAACATTATAAT 59.878 33.333 0.00 0.00 45.49 1.28
398 399 6.430925 ACTTCAGAGCACAAGCAACATTATAA 59.569 34.615 0.00 0.00 45.49 0.98
399 400 5.939883 ACTTCAGAGCACAAGCAACATTATA 59.060 36.000 0.00 0.00 45.49 0.98
400 401 4.763793 ACTTCAGAGCACAAGCAACATTAT 59.236 37.500 0.00 0.00 45.49 1.28
401 402 4.136796 ACTTCAGAGCACAAGCAACATTA 58.863 39.130 0.00 0.00 45.49 1.90
402 403 2.954318 ACTTCAGAGCACAAGCAACATT 59.046 40.909 0.00 0.00 45.49 2.71
403 404 2.579873 ACTTCAGAGCACAAGCAACAT 58.420 42.857 0.00 0.00 45.49 2.71
404 405 2.042686 ACTTCAGAGCACAAGCAACA 57.957 45.000 0.00 0.00 45.49 3.33
405 406 3.065925 AGAAACTTCAGAGCACAAGCAAC 59.934 43.478 0.00 0.00 45.49 4.17
406 407 3.282021 AGAAACTTCAGAGCACAAGCAA 58.718 40.909 0.00 0.00 45.49 3.91
407 408 2.874701 GAGAAACTTCAGAGCACAAGCA 59.125 45.455 0.00 0.00 45.49 3.91
408 409 3.137533 AGAGAAACTTCAGAGCACAAGC 58.862 45.455 0.00 0.00 42.56 4.01
409 410 4.928615 CCTAGAGAAACTTCAGAGCACAAG 59.071 45.833 0.00 0.00 0.00 3.16
410 411 4.345257 ACCTAGAGAAACTTCAGAGCACAA 59.655 41.667 0.00 0.00 0.00 3.33
411 412 3.898123 ACCTAGAGAAACTTCAGAGCACA 59.102 43.478 0.00 0.00 0.00 4.57
412 413 4.529109 ACCTAGAGAAACTTCAGAGCAC 57.471 45.455 0.00 0.00 0.00 4.40
413 414 5.571285 TCTACCTAGAGAAACTTCAGAGCA 58.429 41.667 0.00 0.00 0.00 4.26
427 428 3.498841 GGTAGCCTGCATCTCTACCTAGA 60.499 52.174 22.07 0.00 45.44 2.43
428 429 2.823154 GGTAGCCTGCATCTCTACCTAG 59.177 54.545 22.07 0.00 45.44 3.02
429 430 2.877866 GGTAGCCTGCATCTCTACCTA 58.122 52.381 22.07 1.78 45.44 3.08
430 431 1.710816 GGTAGCCTGCATCTCTACCT 58.289 55.000 22.07 2.53 45.44 3.08
432 433 1.269309 CGTGGTAGCCTGCATCTCTAC 60.269 57.143 10.11 10.11 33.72 2.59
433 434 1.032794 CGTGGTAGCCTGCATCTCTA 58.967 55.000 0.00 0.00 0.00 2.43
434 435 1.680522 CCGTGGTAGCCTGCATCTCT 61.681 60.000 0.00 0.00 0.00 3.10
435 436 1.227380 CCGTGGTAGCCTGCATCTC 60.227 63.158 0.00 0.00 0.00 2.75
436 437 1.264749 TTCCGTGGTAGCCTGCATCT 61.265 55.000 0.00 0.00 0.00 2.90
437 438 1.090052 GTTCCGTGGTAGCCTGCATC 61.090 60.000 0.00 0.00 0.00 3.91
438 439 1.078426 GTTCCGTGGTAGCCTGCAT 60.078 57.895 0.00 0.00 0.00 3.96
439 440 2.345991 GTTCCGTGGTAGCCTGCA 59.654 61.111 0.00 0.00 0.00 4.41
440 441 1.741770 CTGTTCCGTGGTAGCCTGC 60.742 63.158 0.00 0.00 0.00 4.85
441 442 1.079127 CCTGTTCCGTGGTAGCCTG 60.079 63.158 0.00 0.00 0.00 4.85
442 443 0.617820 ATCCTGTTCCGTGGTAGCCT 60.618 55.000 0.00 0.00 0.00 4.58
443 444 1.068741 CTATCCTGTTCCGTGGTAGCC 59.931 57.143 0.00 0.00 0.00 3.93
444 445 1.538419 GCTATCCTGTTCCGTGGTAGC 60.538 57.143 0.00 0.00 0.00 3.58
445 446 2.032620 AGCTATCCTGTTCCGTGGTAG 58.967 52.381 0.00 0.00 0.00 3.18
446 447 2.154567 AGCTATCCTGTTCCGTGGTA 57.845 50.000 0.00 0.00 0.00 3.25
447 448 1.207329 GAAGCTATCCTGTTCCGTGGT 59.793 52.381 0.00 0.00 0.00 4.16
448 449 1.473434 GGAAGCTATCCTGTTCCGTGG 60.473 57.143 7.46 0.00 45.56 4.94
449 450 1.941325 GGAAGCTATCCTGTTCCGTG 58.059 55.000 7.46 0.00 45.56 4.94
459 460 3.636153 ACTTTCTGTGGGGAAGCTATC 57.364 47.619 0.00 0.00 0.00 2.08
460 461 4.536489 AGTTACTTTCTGTGGGGAAGCTAT 59.464 41.667 0.00 0.00 0.00 2.97
461 462 3.908103 AGTTACTTTCTGTGGGGAAGCTA 59.092 43.478 0.00 0.00 0.00 3.32
462 463 2.711547 AGTTACTTTCTGTGGGGAAGCT 59.288 45.455 0.00 0.00 0.00 3.74
463 464 3.141767 AGTTACTTTCTGTGGGGAAGC 57.858 47.619 0.00 0.00 0.00 3.86
464 465 3.821033 CCAAGTTACTTTCTGTGGGGAAG 59.179 47.826 0.00 0.00 0.00 3.46
465 466 3.203487 ACCAAGTTACTTTCTGTGGGGAA 59.797 43.478 5.21 0.00 0.00 3.97
466 467 2.781174 ACCAAGTTACTTTCTGTGGGGA 59.219 45.455 5.21 0.00 0.00 4.81
467 468 2.884639 CACCAAGTTACTTTCTGTGGGG 59.115 50.000 5.21 0.00 0.00 4.96
468 469 3.551846 ACACCAAGTTACTTTCTGTGGG 58.448 45.455 17.58 8.91 0.00 4.61
469 470 4.036380 GGAACACCAAGTTACTTTCTGTGG 59.964 45.833 17.58 10.13 41.51 4.17
470 471 4.260620 CGGAACACCAAGTTACTTTCTGTG 60.261 45.833 13.95 13.95 41.51 3.66
471 472 3.875134 CGGAACACCAAGTTACTTTCTGT 59.125 43.478 0.00 0.00 41.51 3.41
472 473 3.875134 ACGGAACACCAAGTTACTTTCTG 59.125 43.478 0.00 0.00 41.51 3.02
473 474 4.124970 GACGGAACACCAAGTTACTTTCT 58.875 43.478 0.00 0.00 41.51 2.52
474 475 4.124970 AGACGGAACACCAAGTTACTTTC 58.875 43.478 0.00 0.00 41.51 2.62
475 476 4.124970 GAGACGGAACACCAAGTTACTTT 58.875 43.478 0.00 0.00 41.51 2.66
476 477 3.387050 AGAGACGGAACACCAAGTTACTT 59.613 43.478 0.00 0.00 41.51 2.24
477 478 2.963782 AGAGACGGAACACCAAGTTACT 59.036 45.455 0.00 0.00 41.51 2.24
478 479 3.057734 CAGAGACGGAACACCAAGTTAC 58.942 50.000 0.00 0.00 41.51 2.50
479 480 2.036733 CCAGAGACGGAACACCAAGTTA 59.963 50.000 0.00 0.00 41.51 2.24
480 481 1.202651 CCAGAGACGGAACACCAAGTT 60.203 52.381 0.00 0.00 44.93 2.66
481 482 0.393077 CCAGAGACGGAACACCAAGT 59.607 55.000 0.00 0.00 0.00 3.16
482 483 0.951040 GCCAGAGACGGAACACCAAG 60.951 60.000 0.00 0.00 0.00 3.61
483 484 1.070786 GCCAGAGACGGAACACCAA 59.929 57.895 0.00 0.00 0.00 3.67
484 485 1.480212 ATGCCAGAGACGGAACACCA 61.480 55.000 0.00 0.00 0.00 4.17
485 486 0.741221 GATGCCAGAGACGGAACACC 60.741 60.000 0.00 0.00 0.00 4.16
486 487 0.741221 GGATGCCAGAGACGGAACAC 60.741 60.000 0.00 0.00 0.00 3.32
487 488 1.191489 TGGATGCCAGAGACGGAACA 61.191 55.000 0.00 0.00 0.00 3.18
488 489 0.741221 GTGGATGCCAGAGACGGAAC 60.741 60.000 0.00 0.00 32.34 3.62
489 490 1.596934 GTGGATGCCAGAGACGGAA 59.403 57.895 0.00 0.00 32.34 4.30
490 491 2.359169 GGTGGATGCCAGAGACGGA 61.359 63.158 0.00 0.00 32.34 4.69
491 492 2.187946 GGTGGATGCCAGAGACGG 59.812 66.667 0.00 0.00 32.34 4.79
492 493 2.184020 TTGGGTGGATGCCAGAGACG 62.184 60.000 0.00 0.00 32.34 4.18
493 494 0.257039 ATTGGGTGGATGCCAGAGAC 59.743 55.000 0.00 0.00 32.34 3.36
494 495 0.256752 CATTGGGTGGATGCCAGAGA 59.743 55.000 0.00 0.00 32.34 3.10
495 496 0.033796 ACATTGGGTGGATGCCAGAG 60.034 55.000 0.00 0.00 32.34 3.35
496 497 0.409092 AACATTGGGTGGATGCCAGA 59.591 50.000 0.00 0.00 32.34 3.86
497 498 0.819582 GAACATTGGGTGGATGCCAG 59.180 55.000 0.00 0.00 32.34 4.85
498 499 0.614415 GGAACATTGGGTGGATGCCA 60.614 55.000 0.00 0.00 0.00 4.92
499 500 1.666209 CGGAACATTGGGTGGATGCC 61.666 60.000 0.00 0.00 0.00 4.40
500 501 1.666209 CCGGAACATTGGGTGGATGC 61.666 60.000 0.00 0.00 0.00 3.91
501 502 1.037030 CCCGGAACATTGGGTGGATG 61.037 60.000 0.73 0.00 40.76 3.51
502 503 1.306296 CCCGGAACATTGGGTGGAT 59.694 57.895 0.73 0.00 40.76 3.41
503 504 2.760477 CCCGGAACATTGGGTGGA 59.240 61.111 0.73 0.00 40.76 4.02
508 509 1.032014 CTATTGGCCCGGAACATTGG 58.968 55.000 0.73 0.00 0.00 3.16
509 510 0.385390 GCTATTGGCCCGGAACATTG 59.615 55.000 0.73 0.00 34.27 2.82
510 511 2.807247 GCTATTGGCCCGGAACATT 58.193 52.632 0.73 0.16 34.27 2.71
511 512 4.579127 GCTATTGGCCCGGAACAT 57.421 55.556 0.73 0.00 34.27 2.71
539 540 5.884232 CCTCATCCAATTCATCTCAAAGACA 59.116 40.000 0.00 0.00 0.00 3.41
594 595 0.739813 GTCGGCTGCAAATAGGTCGT 60.740 55.000 0.50 0.00 0.00 4.34
611 612 4.496341 CCATGTCGCATTGGAGTTATTGTC 60.496 45.833 0.00 0.00 34.81 3.18
618 619 1.750399 GGCCATGTCGCATTGGAGT 60.750 57.895 0.00 0.00 34.81 3.85
690 691 1.073923 GGATAATTGATGGGTCCCGCT 59.926 52.381 2.65 0.00 0.00 5.52
728 729 2.222886 CGCATGCATGTGAGTAAGTGAC 60.223 50.000 31.87 8.27 40.61 3.67
729 730 2.001872 CGCATGCATGTGAGTAAGTGA 58.998 47.619 31.87 0.00 40.61 3.41
745 746 2.487265 GGATAAGTTGTGGATCCCGCAT 60.487 50.000 9.90 0.00 43.92 4.73
782 783 3.758088 CTCGTGGATGGCTCGGTCG 62.758 68.421 0.00 0.00 0.00 4.79
783 784 2.105128 CTCGTGGATGGCTCGGTC 59.895 66.667 0.00 0.00 0.00 4.79
784 785 4.148825 GCTCGTGGATGGCTCGGT 62.149 66.667 0.00 0.00 0.00 4.69
916 967 1.337823 GGCCGAAGTTGAGCTAGACAA 60.338 52.381 0.00 0.00 0.00 3.18
996 1047 1.035932 GCTTCACAGGCTCCATGCAT 61.036 55.000 0.00 0.00 45.15 3.96
997 1048 1.676635 GCTTCACAGGCTCCATGCA 60.677 57.895 0.00 0.00 45.15 3.96
1009 1060 2.095213 TCACACAAGTCAAACGCTTCAC 59.905 45.455 0.00 0.00 0.00 3.18
1074 1125 2.912025 CCCGGTTGTGGCTTGCTT 60.912 61.111 0.00 0.00 0.00 3.91
1105 1452 4.301505 CTGCTTGGTGCGGTACAT 57.698 55.556 0.00 0.00 46.63 2.29
1405 1758 1.619827 AGCTGCTTTAATTGCTTGCCA 59.380 42.857 0.00 0.00 33.70 4.92
1434 1793 2.547218 CCAGCCATCATATTTGCTTGCC 60.547 50.000 0.00 0.00 30.08 4.52
1661 2022 7.392766 TTGGGTCTCAATATCATTACCAGAT 57.607 36.000 0.00 0.00 0.00 2.90
1677 2038 8.043710 CCTATTACCAGAATATCATTGGGTCTC 58.956 40.741 0.00 0.00 36.28 3.36
1808 2170 7.068716 GGCAGTAGGATTTGGTTTTCTGAATAT 59.931 37.037 0.00 0.00 0.00 1.28
1809 2171 6.377146 GGCAGTAGGATTTGGTTTTCTGAATA 59.623 38.462 0.00 0.00 0.00 1.75
1820 2183 5.888161 ACTTCTATTTGGCAGTAGGATTTGG 59.112 40.000 8.53 0.00 0.00 3.28
1827 2191 3.378427 GCCCAACTTCTATTTGGCAGTAG 59.622 47.826 0.00 3.39 42.06 2.57
1829 2193 2.171003 GCCCAACTTCTATTTGGCAGT 58.829 47.619 0.00 0.00 42.06 4.40
1842 2206 2.817844 GTTATTTTCTCACGGCCCAACT 59.182 45.455 0.00 0.00 0.00 3.16
1867 2231 1.133199 TGGGCTTGTCTCAATTTGGGT 60.133 47.619 0.00 0.00 0.00 4.51
1999 2368 8.677148 AACACAAGTGAAGAAGTATATGTTGT 57.323 30.769 7.28 0.00 0.00 3.32
2000 2369 9.950680 AAAACACAAGTGAAGAAGTATATGTTG 57.049 29.630 7.28 0.00 0.00 3.33
2015 2384 7.538303 AATTTGGCTAAAGAAAACACAAGTG 57.462 32.000 0.65 0.00 0.00 3.16
2022 2421 7.634432 CGACACAAAAATTTGGCTAAAGAAAAC 59.366 33.333 10.38 0.00 42.34 2.43
2308 2797 9.492973 AAATGTCCAAAAGAAATATTTCTGTGG 57.507 29.630 32.46 32.46 46.22 4.17
2329 2818 3.056393 CCATGGACATGCAACTGAAATGT 60.056 43.478 5.56 0.00 37.49 2.71
2370 2884 4.042884 TCACCCTAGCTAGTAGGTGTAGA 58.957 47.826 31.70 19.54 46.66 2.59
2401 2915 1.059913 GCATGTATCTAGGCCCTGGT 58.940 55.000 0.00 0.00 0.00 4.00
2432 2946 8.432013 TCAGTTGATATATATCTTGGTGTGCTT 58.568 33.333 20.74 0.00 33.88 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.