Multiple sequence alignment - TraesCS3A01G464300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G464300 chr3A 100.000 2976 0 0 656 3631 698732770 698735745 0.000000e+00 5496.0
1 TraesCS3A01G464300 chr3A 85.854 1428 170 15 1115 2523 698710570 698711984 0.000000e+00 1489.0
2 TraesCS3A01G464300 chr3A 100.000 354 0 0 1 354 698732115 698732468 0.000000e+00 654.0
3 TraesCS3A01G464300 chr3A 81.429 280 29 14 907 1179 698710311 698710574 1.320000e-49 207.0
4 TraesCS3A01G464300 chr3A 95.098 102 4 1 253 354 478619889 478619789 3.750000e-35 159.0
5 TraesCS3A01G464300 chr3A 75.261 287 61 10 2027 2308 699516666 699516385 1.060000e-25 128.0
6 TraesCS3A01G464300 chr3A 88.235 102 8 4 2789 2888 698714169 698714268 6.370000e-23 119.0
7 TraesCS3A01G464300 chr3A 90.909 44 4 0 44 87 100348270 100348313 3.920000e-05 60.2
8 TraesCS3A01G464300 chr3D 93.756 2002 81 14 970 2954 564144192 564146166 0.000000e+00 2964.0
9 TraesCS3A01G464300 chr3D 86.672 1223 156 5 1115 2332 564128417 564129637 0.000000e+00 1349.0
10 TraesCS3A01G464300 chr3D 94.567 681 10 6 2951 3629 564146258 564146913 0.000000e+00 1027.0
11 TraesCS3A01G464300 chr3D 84.390 410 58 5 1177 1584 564889762 564890167 7.310000e-107 398.0
12 TraesCS3A01G464300 chr3D 81.297 401 59 11 1189 1584 568009049 568009438 9.790000e-81 311.0
13 TraesCS3A01G464300 chr3D 76.423 492 101 6 1184 1666 577029031 577029516 6.020000e-63 252.0
14 TraesCS3A01G464300 chr3D 80.655 336 30 21 845 1171 564128104 564128413 1.010000e-55 228.0
15 TraesCS3A01G464300 chr3D 75.839 298 68 4 2028 2323 564908934 564908639 8.120000e-32 148.0
16 TraesCS3A01G464300 chr3B 93.990 1431 59 6 1682 3098 751913702 751915119 0.000000e+00 2141.0
17 TraesCS3A01G464300 chr3B 84.529 1687 192 35 862 2523 751751192 751752834 0.000000e+00 1605.0
18 TraesCS3A01G464300 chr3B 88.356 876 77 13 1193 2058 751760806 751761666 0.000000e+00 1029.0
19 TraesCS3A01G464300 chr3B 96.787 498 14 1 3134 3629 751915114 751915611 0.000000e+00 830.0
20 TraesCS3A01G464300 chr3B 90.937 331 23 2 2053 2376 751778981 751779311 4.300000e-119 438.0
21 TraesCS3A01G464300 chr3B 84.598 448 19 14 862 1308 751839755 751840153 2.030000e-107 399.0
22 TraesCS3A01G464300 chr3B 82.641 409 66 3 1177 1584 752344288 752344692 1.240000e-94 357.0
23 TraesCS3A01G464300 chr3B 92.486 173 8 3 672 840 751839195 751839366 3.620000e-60 243.0
24 TraesCS3A01G464300 chr3B 80.952 273 45 7 2028 2298 752345148 752345415 3.670000e-50 209.0
25 TraesCS3A01G464300 chr3B 78.317 309 52 14 2589 2888 751752971 751753273 6.190000e-43 185.0
26 TraesCS3A01G464300 chr3B 94.118 102 6 0 253 354 748512493 748512392 4.850000e-34 156.0
27 TraesCS3A01G464300 chr3B 92.771 83 5 1 759 841 751751051 751751132 6.370000e-23 119.0
28 TraesCS3A01G464300 chr7A 97.059 102 2 1 253 354 556133632 556133532 1.730000e-38 171.0
29 TraesCS3A01G464300 chr7A 94.118 102 5 1 253 354 427837950 427837850 1.750000e-33 154.0
30 TraesCS3A01G464300 chr7A 97.222 36 1 0 56 91 64598457 64598422 1.090000e-05 62.1
31 TraesCS3A01G464300 chr1A 96.117 103 4 0 252 354 574840974 574841076 6.240000e-38 169.0
32 TraesCS3A01G464300 chr2A 95.146 103 5 0 252 354 739849409 739849511 2.900000e-36 163.0
33 TraesCS3A01G464300 chr5A 95.098 102 4 1 246 347 680858724 680858824 3.750000e-35 159.0
34 TraesCS3A01G464300 chrUn 94.118 102 6 0 253 354 47265995 47266096 4.850000e-34 156.0
35 TraesCS3A01G464300 chrUn 94.872 39 2 0 49 87 405527239 405527201 1.090000e-05 62.1
36 TraesCS3A01G464300 chrUn 94.872 39 2 0 49 87 473311980 473312018 1.090000e-05 62.1
37 TraesCS3A01G464300 chr4A 94.118 102 6 0 253 354 598775872 598775973 4.850000e-34 156.0
38 TraesCS3A01G464300 chr7B 95.349 43 2 0 49 91 686157958 686157916 6.510000e-08 69.4
39 TraesCS3A01G464300 chr2B 95.349 43 2 0 49 91 375743355 375743313 6.510000e-08 69.4
40 TraesCS3A01G464300 chr6A 95.122 41 2 0 51 91 388944515 388944475 8.420000e-07 65.8
41 TraesCS3A01G464300 chr6B 93.023 43 3 0 49 91 553078170 553078212 3.030000e-06 63.9
42 TraesCS3A01G464300 chr5D 94.872 39 2 0 49 87 89898889 89898851 1.090000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G464300 chr3A 698732115 698735745 3630 False 3075.000000 5496 100.000000 1 3631 2 chr3A.!!$F3 3630
1 TraesCS3A01G464300 chr3A 698710311 698714268 3957 False 605.000000 1489 85.172667 907 2888 3 chr3A.!!$F2 1981
2 TraesCS3A01G464300 chr3D 564144192 564146913 2721 False 1995.500000 2964 94.161500 970 3629 2 chr3D.!!$F5 2659
3 TraesCS3A01G464300 chr3D 564128104 564129637 1533 False 788.500000 1349 83.663500 845 2332 2 chr3D.!!$F4 1487
4 TraesCS3A01G464300 chr3B 751913702 751915611 1909 False 1485.500000 2141 95.388500 1682 3629 2 chr3B.!!$F5 1947
5 TraesCS3A01G464300 chr3B 751760806 751761666 860 False 1029.000000 1029 88.356000 1193 2058 1 chr3B.!!$F1 865
6 TraesCS3A01G464300 chr3B 751751051 751753273 2222 False 636.333333 1605 85.205667 759 2888 3 chr3B.!!$F3 2129
7 TraesCS3A01G464300 chr3B 751839195 751840153 958 False 321.000000 399 88.542000 672 1308 2 chr3B.!!$F4 636
8 TraesCS3A01G464300 chr3B 752344288 752345415 1127 False 283.000000 357 81.796500 1177 2298 2 chr3B.!!$F6 1121

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 295 0.037303 TATAGAGGGGGCCGAGTACG 59.963 60.0 0.0 0.0 39.43 3.67 F
298 299 0.250901 GAGGGGGCCGAGTACGTATA 60.251 60.0 0.0 0.0 37.88 1.47 F
1152 1596 0.391263 ATGAGGTTCCGACGCCTTTC 60.391 55.0 0.0 0.0 34.81 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1626 2074 2.073307 CACGGTGAGATTGTGCGAG 58.927 57.895 0.74 0.0 0.0 5.03 R
1706 2202 3.410631 ACATAACATCGTTGGTGGTCA 57.589 42.857 0.00 0.0 0.0 4.02 R
3117 5714 0.258774 ACCCAGAAGCACACAAACCT 59.741 50.000 0.00 0.0 0.0 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.931385 ACTTCCAATGCAATATATTCACAAAC 57.069 30.769 0.00 0.00 0.00 2.93
28 29 8.752187 ACTTCCAATGCAATATATTCACAAACT 58.248 29.630 0.00 0.00 0.00 2.66
29 30 9.590451 CTTCCAATGCAATATATTCACAAACTT 57.410 29.630 0.00 0.00 0.00 2.66
30 31 9.585099 TTCCAATGCAATATATTCACAAACTTC 57.415 29.630 0.00 0.00 0.00 3.01
31 32 7.914871 TCCAATGCAATATATTCACAAACTTCG 59.085 33.333 0.00 0.00 0.00 3.79
32 33 7.914871 CCAATGCAATATATTCACAAACTTCGA 59.085 33.333 0.00 0.00 0.00 3.71
33 34 8.736742 CAATGCAATATATTCACAAACTTCGAC 58.263 33.333 0.00 0.00 0.00 4.20
34 35 7.371126 TGCAATATATTCACAAACTTCGACA 57.629 32.000 0.00 0.00 0.00 4.35
35 36 7.984391 TGCAATATATTCACAAACTTCGACAT 58.016 30.769 0.00 0.00 0.00 3.06
36 37 9.103861 TGCAATATATTCACAAACTTCGACATA 57.896 29.630 0.00 0.00 0.00 2.29
37 38 9.929722 GCAATATATTCACAAACTTCGACATAA 57.070 29.630 0.00 0.00 0.00 1.90
42 43 9.773328 ATATTCACAAACTTCGACATAATTGTG 57.227 29.630 16.48 16.48 45.42 3.33
43 44 6.612247 TCACAAACTTCGACATAATTGTGT 57.388 33.333 7.65 7.65 44.74 3.72
44 45 7.716768 TCACAAACTTCGACATAATTGTGTA 57.283 32.000 19.48 0.00 44.74 2.90
45 46 7.569297 TCACAAACTTCGACATAATTGTGTAC 58.431 34.615 19.48 1.91 44.74 2.90
46 47 7.439955 TCACAAACTTCGACATAATTGTGTACT 59.560 33.333 19.48 0.00 44.74 2.73
47 48 7.530525 CACAAACTTCGACATAATTGTGTACTG 59.469 37.037 7.92 2.04 41.46 2.74
48 49 5.779806 ACTTCGACATAATTGTGTACTGC 57.220 39.130 7.92 0.00 35.79 4.40
49 50 5.479306 ACTTCGACATAATTGTGTACTGCT 58.521 37.500 7.92 0.00 35.79 4.24
50 51 5.577164 ACTTCGACATAATTGTGTACTGCTC 59.423 40.000 7.92 0.00 35.79 4.26
51 52 5.324784 TCGACATAATTGTGTACTGCTCT 57.675 39.130 7.92 0.00 35.79 4.09
52 53 5.340803 TCGACATAATTGTGTACTGCTCTC 58.659 41.667 7.92 0.00 35.79 3.20
53 54 4.504461 CGACATAATTGTGTACTGCTCTCC 59.496 45.833 7.92 0.00 35.79 3.71
54 55 4.770795 ACATAATTGTGTACTGCTCTCCC 58.229 43.478 5.98 0.00 33.85 4.30
55 56 4.471386 ACATAATTGTGTACTGCTCTCCCT 59.529 41.667 5.98 0.00 33.85 4.20
56 57 3.340814 AATTGTGTACTGCTCTCCCTG 57.659 47.619 0.00 0.00 0.00 4.45
57 58 1.717032 TTGTGTACTGCTCTCCCTGT 58.283 50.000 0.00 0.00 0.00 4.00
58 59 1.257743 TGTGTACTGCTCTCCCTGTC 58.742 55.000 0.00 0.00 0.00 3.51
59 60 0.533032 GTGTACTGCTCTCCCTGTCC 59.467 60.000 0.00 0.00 0.00 4.02
60 61 0.614979 TGTACTGCTCTCCCTGTCCC 60.615 60.000 0.00 0.00 0.00 4.46
61 62 0.614979 GTACTGCTCTCCCTGTCCCA 60.615 60.000 0.00 0.00 0.00 4.37
62 63 0.339859 TACTGCTCTCCCTGTCCCAT 59.660 55.000 0.00 0.00 0.00 4.00
63 64 0.339859 ACTGCTCTCCCTGTCCCATA 59.660 55.000 0.00 0.00 0.00 2.74
64 65 1.273838 ACTGCTCTCCCTGTCCCATAA 60.274 52.381 0.00 0.00 0.00 1.90
65 66 2.053244 CTGCTCTCCCTGTCCCATAAT 58.947 52.381 0.00 0.00 0.00 1.28
66 67 3.242867 CTGCTCTCCCTGTCCCATAATA 58.757 50.000 0.00 0.00 0.00 0.98
67 68 3.843027 CTGCTCTCCCTGTCCCATAATAT 59.157 47.826 0.00 0.00 0.00 1.28
68 69 5.023514 TGCTCTCCCTGTCCCATAATATA 57.976 43.478 0.00 0.00 0.00 0.86
69 70 5.411493 TGCTCTCCCTGTCCCATAATATAA 58.589 41.667 0.00 0.00 0.00 0.98
70 71 5.485353 TGCTCTCCCTGTCCCATAATATAAG 59.515 44.000 0.00 0.00 0.00 1.73
71 72 5.721960 GCTCTCCCTGTCCCATAATATAAGA 59.278 44.000 0.00 0.00 0.00 2.10
72 73 6.213600 GCTCTCCCTGTCCCATAATATAAGAA 59.786 42.308 0.00 0.00 0.00 2.52
73 74 7.554959 TCTCCCTGTCCCATAATATAAGAAC 57.445 40.000 0.00 0.00 0.00 3.01
74 75 7.079700 TCTCCCTGTCCCATAATATAAGAACA 58.920 38.462 0.00 0.00 0.00 3.18
75 76 7.739444 TCTCCCTGTCCCATAATATAAGAACAT 59.261 37.037 0.00 0.00 0.00 2.71
76 77 8.287904 TCCCTGTCCCATAATATAAGAACATT 57.712 34.615 0.00 0.00 0.00 2.71
77 78 8.732854 TCCCTGTCCCATAATATAAGAACATTT 58.267 33.333 0.00 0.00 0.00 2.32
78 79 9.367160 CCCTGTCCCATAATATAAGAACATTTT 57.633 33.333 0.00 0.00 0.00 1.82
93 94 7.624360 AGAACATTTTTCACACTACACTTCA 57.376 32.000 0.00 0.00 0.00 3.02
94 95 7.697691 AGAACATTTTTCACACTACACTTCAG 58.302 34.615 0.00 0.00 0.00 3.02
95 96 5.821204 ACATTTTTCACACTACACTTCAGC 58.179 37.500 0.00 0.00 0.00 4.26
96 97 5.590259 ACATTTTTCACACTACACTTCAGCT 59.410 36.000 0.00 0.00 0.00 4.24
97 98 6.095440 ACATTTTTCACACTACACTTCAGCTT 59.905 34.615 0.00 0.00 0.00 3.74
98 99 6.509418 TTTTTCACACTACACTTCAGCTTT 57.491 33.333 0.00 0.00 0.00 3.51
99 100 6.509418 TTTTCACACTACACTTCAGCTTTT 57.491 33.333 0.00 0.00 0.00 2.27
100 101 7.618502 TTTTCACACTACACTTCAGCTTTTA 57.381 32.000 0.00 0.00 0.00 1.52
101 102 6.844696 TTCACACTACACTTCAGCTTTTAG 57.155 37.500 0.00 0.00 0.00 1.85
102 103 5.914033 TCACACTACACTTCAGCTTTTAGT 58.086 37.500 0.00 0.00 0.00 2.24
103 104 6.346096 TCACACTACACTTCAGCTTTTAGTT 58.654 36.000 0.00 0.00 0.00 2.24
104 105 6.821665 TCACACTACACTTCAGCTTTTAGTTT 59.178 34.615 0.00 0.00 0.00 2.66
105 106 7.335924 TCACACTACACTTCAGCTTTTAGTTTT 59.664 33.333 0.00 0.00 0.00 2.43
106 107 7.640240 CACACTACACTTCAGCTTTTAGTTTTC 59.360 37.037 0.00 0.00 0.00 2.29
107 108 7.335924 ACACTACACTTCAGCTTTTAGTTTTCA 59.664 33.333 0.00 0.00 0.00 2.69
108 109 7.852945 CACTACACTTCAGCTTTTAGTTTTCAG 59.147 37.037 0.00 0.00 0.00 3.02
109 110 7.769044 ACTACACTTCAGCTTTTAGTTTTCAGA 59.231 33.333 0.00 0.00 0.00 3.27
110 111 7.573968 ACACTTCAGCTTTTAGTTTTCAGAT 57.426 32.000 0.00 0.00 0.00 2.90
111 112 8.677148 ACACTTCAGCTTTTAGTTTTCAGATA 57.323 30.769 0.00 0.00 0.00 1.98
112 113 9.289782 ACACTTCAGCTTTTAGTTTTCAGATAT 57.710 29.630 0.00 0.00 0.00 1.63
124 125 7.921786 AGTTTTCAGATATTCAAACATCCGA 57.078 32.000 0.00 0.00 32.52 4.55
125 126 7.752695 AGTTTTCAGATATTCAAACATCCGAC 58.247 34.615 0.00 0.00 32.52 4.79
126 127 7.607991 AGTTTTCAGATATTCAAACATCCGACT 59.392 33.333 0.00 0.00 32.52 4.18
127 128 7.921786 TTTCAGATATTCAAACATCCGACTT 57.078 32.000 0.00 0.00 0.00 3.01
128 129 9.443323 TTTTCAGATATTCAAACATCCGACTTA 57.557 29.630 0.00 0.00 0.00 2.24
129 130 8.648557 TTCAGATATTCAAACATCCGACTTAG 57.351 34.615 0.00 0.00 0.00 2.18
130 131 8.007405 TCAGATATTCAAACATCCGACTTAGA 57.993 34.615 0.00 0.00 0.00 2.10
131 132 8.138074 TCAGATATTCAAACATCCGACTTAGAG 58.862 37.037 0.00 0.00 0.00 2.43
132 133 7.923344 CAGATATTCAAACATCCGACTTAGAGT 59.077 37.037 0.00 0.00 0.00 3.24
133 134 7.923344 AGATATTCAAACATCCGACTTAGAGTG 59.077 37.037 0.00 0.00 0.00 3.51
134 135 5.462530 TTCAAACATCCGACTTAGAGTGA 57.537 39.130 0.00 0.00 0.00 3.41
135 136 5.060662 TCAAACATCCGACTTAGAGTGAG 57.939 43.478 0.00 0.00 0.00 3.51
136 137 4.082190 TCAAACATCCGACTTAGAGTGAGG 60.082 45.833 0.00 0.00 0.00 3.86
137 138 2.379972 ACATCCGACTTAGAGTGAGGG 58.620 52.381 0.00 0.00 0.00 4.30
138 139 2.025226 ACATCCGACTTAGAGTGAGGGA 60.025 50.000 0.00 0.00 0.00 4.20
139 140 2.421751 TCCGACTTAGAGTGAGGGAG 57.578 55.000 0.00 0.00 0.00 4.30
140 141 0.741915 CCGACTTAGAGTGAGGGAGC 59.258 60.000 0.00 0.00 0.00 4.70
141 142 1.464734 CGACTTAGAGTGAGGGAGCA 58.535 55.000 0.00 0.00 0.00 4.26
142 143 1.403679 CGACTTAGAGTGAGGGAGCAG 59.596 57.143 0.00 0.00 0.00 4.24
143 144 2.452505 GACTTAGAGTGAGGGAGCAGT 58.547 52.381 0.00 0.00 0.00 4.40
144 145 2.829120 GACTTAGAGTGAGGGAGCAGTT 59.171 50.000 0.00 0.00 0.00 3.16
145 146 2.564947 ACTTAGAGTGAGGGAGCAGTTG 59.435 50.000 0.00 0.00 0.00 3.16
146 147 2.310779 TAGAGTGAGGGAGCAGTTGT 57.689 50.000 0.00 0.00 0.00 3.32
147 148 1.428869 AGAGTGAGGGAGCAGTTGTT 58.571 50.000 0.00 0.00 0.00 2.83
148 149 1.346068 AGAGTGAGGGAGCAGTTGTTC 59.654 52.381 0.00 0.00 0.00 3.18
149 150 0.398318 AGTGAGGGAGCAGTTGTTCC 59.602 55.000 6.47 6.47 43.68 3.62
150 151 0.108585 GTGAGGGAGCAGTTGTTCCA 59.891 55.000 15.53 0.00 45.85 3.53
151 152 0.397941 TGAGGGAGCAGTTGTTCCAG 59.602 55.000 15.53 0.00 45.85 3.86
152 153 0.957888 GAGGGAGCAGTTGTTCCAGC 60.958 60.000 15.53 4.46 45.85 4.85
153 154 1.973812 GGGAGCAGTTGTTCCAGCC 60.974 63.158 15.53 0.00 45.85 4.85
154 155 1.073897 GGAGCAGTTGTTCCAGCCT 59.926 57.895 9.78 0.00 43.82 4.58
155 156 0.538287 GGAGCAGTTGTTCCAGCCTT 60.538 55.000 9.78 0.00 43.82 4.35
156 157 0.877743 GAGCAGTTGTTCCAGCCTTC 59.122 55.000 0.00 0.00 0.00 3.46
157 158 0.183492 AGCAGTTGTTCCAGCCTTCA 59.817 50.000 0.00 0.00 0.00 3.02
158 159 1.202976 AGCAGTTGTTCCAGCCTTCAT 60.203 47.619 0.00 0.00 0.00 2.57
159 160 2.040278 AGCAGTTGTTCCAGCCTTCATA 59.960 45.455 0.00 0.00 0.00 2.15
160 161 3.019564 GCAGTTGTTCCAGCCTTCATAT 58.980 45.455 0.00 0.00 0.00 1.78
161 162 4.080356 AGCAGTTGTTCCAGCCTTCATATA 60.080 41.667 0.00 0.00 0.00 0.86
162 163 4.823989 GCAGTTGTTCCAGCCTTCATATAT 59.176 41.667 0.00 0.00 0.00 0.86
163 164 5.300286 GCAGTTGTTCCAGCCTTCATATATT 59.700 40.000 0.00 0.00 0.00 1.28
164 165 6.183360 GCAGTTGTTCCAGCCTTCATATATTT 60.183 38.462 0.00 0.00 0.00 1.40
165 166 7.631377 GCAGTTGTTCCAGCCTTCATATATTTT 60.631 37.037 0.00 0.00 0.00 1.82
166 167 8.253113 CAGTTGTTCCAGCCTTCATATATTTTT 58.747 33.333 0.00 0.00 0.00 1.94
193 194 9.482627 TTGGTTATTGTGGCTATAAAACTTTTG 57.517 29.630 0.00 0.00 0.00 2.44
194 195 7.600752 TGGTTATTGTGGCTATAAAACTTTTGC 59.399 33.333 0.00 0.00 0.00 3.68
195 196 7.064134 GGTTATTGTGGCTATAAAACTTTTGCC 59.936 37.037 7.01 7.01 40.62 4.52
196 197 4.167554 TGTGGCTATAAAACTTTTGCCG 57.832 40.909 8.71 0.00 42.87 5.69
197 198 3.821600 TGTGGCTATAAAACTTTTGCCGA 59.178 39.130 8.71 0.00 42.87 5.54
198 199 4.163552 GTGGCTATAAAACTTTTGCCGAC 58.836 43.478 8.71 5.75 42.87 4.79
199 200 4.076394 TGGCTATAAAACTTTTGCCGACT 58.924 39.130 8.71 0.00 42.87 4.18
200 201 4.155280 TGGCTATAAAACTTTTGCCGACTC 59.845 41.667 8.71 0.00 42.87 3.36
201 202 4.395231 GGCTATAAAACTTTTGCCGACTCT 59.605 41.667 0.00 0.00 0.00 3.24
202 203 5.583457 GGCTATAAAACTTTTGCCGACTCTA 59.417 40.000 0.00 0.00 0.00 2.43
203 204 6.456584 GGCTATAAAACTTTTGCCGACTCTAC 60.457 42.308 0.00 0.00 0.00 2.59
204 205 6.313164 GCTATAAAACTTTTGCCGACTCTACT 59.687 38.462 0.00 0.00 0.00 2.57
205 206 7.490402 GCTATAAAACTTTTGCCGACTCTACTA 59.510 37.037 0.00 0.00 0.00 1.82
206 207 7.829378 ATAAAACTTTTGCCGACTCTACTAG 57.171 36.000 0.00 0.00 0.00 2.57
207 208 5.464030 AAACTTTTGCCGACTCTACTAGA 57.536 39.130 0.00 0.00 0.00 2.43
223 224 7.966339 TCTACTAGAGTTGCTTTTATACCCA 57.034 36.000 0.00 0.00 0.00 4.51
224 225 8.370266 TCTACTAGAGTTGCTTTTATACCCAA 57.630 34.615 0.00 0.00 0.00 4.12
225 226 8.255905 TCTACTAGAGTTGCTTTTATACCCAAC 58.744 37.037 0.00 0.00 38.20 3.77
226 227 6.178324 ACTAGAGTTGCTTTTATACCCAACC 58.822 40.000 0.00 0.00 38.58 3.77
227 228 5.256806 AGAGTTGCTTTTATACCCAACCT 57.743 39.130 0.00 0.00 38.58 3.50
228 229 6.382919 AGAGTTGCTTTTATACCCAACCTA 57.617 37.500 0.00 0.00 38.58 3.08
229 230 6.178324 AGAGTTGCTTTTATACCCAACCTAC 58.822 40.000 0.00 0.00 38.58 3.18
230 231 4.939439 AGTTGCTTTTATACCCAACCTACG 59.061 41.667 0.00 0.00 38.58 3.51
231 232 4.822685 TGCTTTTATACCCAACCTACGA 57.177 40.909 0.00 0.00 0.00 3.43
232 233 5.362105 TGCTTTTATACCCAACCTACGAT 57.638 39.130 0.00 0.00 0.00 3.73
233 234 5.747342 TGCTTTTATACCCAACCTACGATT 58.253 37.500 0.00 0.00 0.00 3.34
234 235 6.181908 TGCTTTTATACCCAACCTACGATTT 58.818 36.000 0.00 0.00 0.00 2.17
235 236 6.660094 TGCTTTTATACCCAACCTACGATTTT 59.340 34.615 0.00 0.00 0.00 1.82
236 237 7.148205 TGCTTTTATACCCAACCTACGATTTTC 60.148 37.037 0.00 0.00 0.00 2.29
237 238 7.148205 GCTTTTATACCCAACCTACGATTTTCA 60.148 37.037 0.00 0.00 0.00 2.69
238 239 8.810990 TTTTATACCCAACCTACGATTTTCAT 57.189 30.769 0.00 0.00 0.00 2.57
239 240 8.441312 TTTATACCCAACCTACGATTTTCATC 57.559 34.615 0.00 0.00 0.00 2.92
240 241 4.295141 ACCCAACCTACGATTTTCATCA 57.705 40.909 0.00 0.00 0.00 3.07
241 242 4.658063 ACCCAACCTACGATTTTCATCAA 58.342 39.130 0.00 0.00 0.00 2.57
242 243 5.074115 ACCCAACCTACGATTTTCATCAAA 58.926 37.500 0.00 0.00 0.00 2.69
243 244 5.536916 ACCCAACCTACGATTTTCATCAAAA 59.463 36.000 0.00 0.00 35.92 2.44
244 245 6.092748 CCCAACCTACGATTTTCATCAAAAG 58.907 40.000 0.00 0.00 34.92 2.27
245 246 6.294508 CCCAACCTACGATTTTCATCAAAAGT 60.295 38.462 0.00 0.00 34.92 2.66
246 247 6.801862 CCAACCTACGATTTTCATCAAAAGTC 59.198 38.462 0.00 0.00 34.92 3.01
247 248 7.359595 CAACCTACGATTTTCATCAAAAGTCA 58.640 34.615 0.00 0.00 34.92 3.41
248 249 7.687941 ACCTACGATTTTCATCAAAAGTCAT 57.312 32.000 0.00 0.00 34.92 3.06
249 250 7.752695 ACCTACGATTTTCATCAAAAGTCATC 58.247 34.615 0.00 0.00 34.92 2.92
250 251 6.901887 CCTACGATTTTCATCAAAAGTCATCG 59.098 38.462 0.00 0.00 39.40 3.84
251 252 5.088739 ACGATTTTCATCAAAAGTCATCGC 58.911 37.500 0.00 0.00 38.08 4.58
252 253 4.496895 CGATTTTCATCAAAAGTCATCGCC 59.503 41.667 0.00 0.00 34.92 5.54
253 254 4.844998 TTTTCATCAAAAGTCATCGCCA 57.155 36.364 0.00 0.00 0.00 5.69
254 255 4.424061 TTTCATCAAAAGTCATCGCCAG 57.576 40.909 0.00 0.00 0.00 4.85
255 256 3.057969 TCATCAAAAGTCATCGCCAGT 57.942 42.857 0.00 0.00 0.00 4.00
256 257 2.743664 TCATCAAAAGTCATCGCCAGTG 59.256 45.455 0.00 0.00 0.00 3.66
257 258 1.522668 TCAAAAGTCATCGCCAGTGG 58.477 50.000 4.20 4.20 0.00 4.00
258 259 0.109597 CAAAAGTCATCGCCAGTGGC 60.110 55.000 25.07 25.07 46.75 5.01
272 273 2.892640 TGGCGGAGTCAGGATTCG 59.107 61.111 0.00 0.00 36.97 3.34
273 274 1.680989 TGGCGGAGTCAGGATTCGA 60.681 57.895 0.00 0.00 36.97 3.71
274 275 1.066587 GGCGGAGTCAGGATTCGAG 59.933 63.158 0.00 0.00 0.00 4.04
275 276 1.668101 GGCGGAGTCAGGATTCGAGT 61.668 60.000 0.00 0.00 0.00 4.18
276 277 1.022735 GCGGAGTCAGGATTCGAGTA 58.977 55.000 0.00 0.00 0.00 2.59
277 278 1.609555 GCGGAGTCAGGATTCGAGTAT 59.390 52.381 0.00 0.00 0.00 2.12
278 279 2.812591 GCGGAGTCAGGATTCGAGTATA 59.187 50.000 0.00 0.00 0.00 1.47
279 280 3.120130 GCGGAGTCAGGATTCGAGTATAG 60.120 52.174 0.00 0.00 0.00 1.31
280 281 4.316645 CGGAGTCAGGATTCGAGTATAGA 58.683 47.826 0.00 0.00 0.00 1.98
281 282 4.390603 CGGAGTCAGGATTCGAGTATAGAG 59.609 50.000 0.00 0.00 0.00 2.43
282 283 4.698304 GGAGTCAGGATTCGAGTATAGAGG 59.302 50.000 0.00 0.00 0.00 3.69
283 284 4.658063 AGTCAGGATTCGAGTATAGAGGG 58.342 47.826 0.00 0.00 0.00 4.30
284 285 3.759618 GTCAGGATTCGAGTATAGAGGGG 59.240 52.174 0.00 0.00 0.00 4.79
285 286 3.093057 CAGGATTCGAGTATAGAGGGGG 58.907 54.545 0.00 0.00 0.00 5.40
286 287 1.826096 GGATTCGAGTATAGAGGGGGC 59.174 57.143 0.00 0.00 0.00 5.80
287 288 1.826096 GATTCGAGTATAGAGGGGGCC 59.174 57.143 0.00 0.00 0.00 5.80
288 289 0.538977 TTCGAGTATAGAGGGGGCCG 60.539 60.000 0.00 0.00 0.00 6.13
289 290 1.074423 CGAGTATAGAGGGGGCCGA 59.926 63.158 0.00 0.00 0.00 5.54
290 291 0.961358 CGAGTATAGAGGGGGCCGAG 60.961 65.000 0.00 0.00 0.00 4.63
291 292 0.112801 GAGTATAGAGGGGGCCGAGT 59.887 60.000 0.00 0.00 0.00 4.18
292 293 1.353694 GAGTATAGAGGGGGCCGAGTA 59.646 57.143 0.00 0.00 0.00 2.59
293 294 1.075212 AGTATAGAGGGGGCCGAGTAC 59.925 57.143 0.00 0.00 0.00 2.73
294 295 0.037303 TATAGAGGGGGCCGAGTACG 59.963 60.000 0.00 0.00 39.43 3.67
295 296 2.004408 ATAGAGGGGGCCGAGTACGT 62.004 60.000 0.00 0.00 37.88 3.57
296 297 1.344953 TAGAGGGGGCCGAGTACGTA 61.345 60.000 0.00 0.00 37.88 3.57
297 298 1.530183 GAGGGGGCCGAGTACGTAT 60.530 63.158 0.00 0.00 37.88 3.06
298 299 0.250901 GAGGGGGCCGAGTACGTATA 60.251 60.000 0.00 0.00 37.88 1.47
299 300 0.407139 AGGGGGCCGAGTACGTATAT 59.593 55.000 0.00 0.00 37.88 0.86
300 301 1.203100 AGGGGGCCGAGTACGTATATT 60.203 52.381 0.00 0.00 37.88 1.28
301 302 1.067354 GGGGGCCGAGTACGTATATTG 60.067 57.143 0.00 0.00 37.88 1.90
302 303 1.888512 GGGGCCGAGTACGTATATTGA 59.111 52.381 0.00 0.00 37.88 2.57
303 304 2.494870 GGGGCCGAGTACGTATATTGAT 59.505 50.000 0.00 0.00 37.88 2.57
304 305 3.428589 GGGGCCGAGTACGTATATTGATC 60.429 52.174 0.00 0.00 37.88 2.92
305 306 3.442977 GGGCCGAGTACGTATATTGATCT 59.557 47.826 0.00 0.00 37.88 2.75
306 307 4.637534 GGGCCGAGTACGTATATTGATCTA 59.362 45.833 0.00 0.00 37.88 1.98
307 308 5.124457 GGGCCGAGTACGTATATTGATCTAA 59.876 44.000 0.00 0.00 37.88 2.10
308 309 6.183360 GGGCCGAGTACGTATATTGATCTAAT 60.183 42.308 0.00 0.00 37.88 1.73
309 310 6.911511 GGCCGAGTACGTATATTGATCTAATC 59.088 42.308 0.00 0.00 37.88 1.75
310 311 7.201714 GGCCGAGTACGTATATTGATCTAATCT 60.202 40.741 0.00 0.00 37.88 2.40
311 312 7.851963 GCCGAGTACGTATATTGATCTAATCTC 59.148 40.741 0.00 0.00 37.88 2.75
312 313 8.057156 CCGAGTACGTATATTGATCTAATCTCG 58.943 40.741 13.29 13.29 35.06 4.04
313 314 8.593842 CGAGTACGTATATTGATCTAATCTCGT 58.406 37.037 12.47 1.93 32.76 4.18
316 317 9.275231 GTACGTATATTGATCTAATCTCGTTGG 57.725 37.037 0.00 0.00 34.23 3.77
317 318 7.883217 ACGTATATTGATCTAATCTCGTTGGT 58.117 34.615 0.00 0.00 30.99 3.67
318 319 9.006839 ACGTATATTGATCTAATCTCGTTGGTA 57.993 33.333 0.00 0.00 30.99 3.25
319 320 9.836076 CGTATATTGATCTAATCTCGTTGGTAA 57.164 33.333 0.00 0.00 0.00 2.85
325 326 9.745880 TTGATCTAATCTCGTTGGTAATTACTC 57.254 33.333 15.05 6.39 0.00 2.59
326 327 8.074370 TGATCTAATCTCGTTGGTAATTACTCG 58.926 37.037 15.05 15.68 0.00 4.18
327 328 7.325660 TCTAATCTCGTTGGTAATTACTCGT 57.674 36.000 15.05 5.45 0.00 4.18
328 329 7.412853 TCTAATCTCGTTGGTAATTACTCGTC 58.587 38.462 15.05 0.00 0.00 4.20
329 330 4.007282 TCTCGTTGGTAATTACTCGTCG 57.993 45.455 15.05 13.64 0.00 5.12
330 331 2.518949 TCGTTGGTAATTACTCGTCGC 58.481 47.619 15.05 0.00 0.00 5.19
331 332 2.162208 TCGTTGGTAATTACTCGTCGCT 59.838 45.455 15.05 0.00 0.00 4.93
332 333 2.529090 CGTTGGTAATTACTCGTCGCTC 59.471 50.000 15.05 0.00 0.00 5.03
333 334 2.856557 GTTGGTAATTACTCGTCGCTCC 59.143 50.000 15.05 0.00 0.00 4.70
334 335 2.372264 TGGTAATTACTCGTCGCTCCT 58.628 47.619 15.05 0.00 0.00 3.69
335 336 3.544684 TGGTAATTACTCGTCGCTCCTA 58.455 45.455 15.05 0.00 0.00 2.94
336 337 3.313526 TGGTAATTACTCGTCGCTCCTAC 59.686 47.826 15.05 0.00 0.00 3.18
337 338 3.563390 GGTAATTACTCGTCGCTCCTACT 59.437 47.826 15.05 0.00 0.00 2.57
338 339 4.752101 GGTAATTACTCGTCGCTCCTACTA 59.248 45.833 15.05 0.00 0.00 1.82
339 340 5.237344 GGTAATTACTCGTCGCTCCTACTAA 59.763 44.000 15.05 0.00 0.00 2.24
340 341 5.824904 AATTACTCGTCGCTCCTACTAAA 57.175 39.130 0.00 0.00 0.00 1.85
341 342 5.824904 ATTACTCGTCGCTCCTACTAAAA 57.175 39.130 0.00 0.00 0.00 1.52
342 343 5.824904 TTACTCGTCGCTCCTACTAAAAT 57.175 39.130 0.00 0.00 0.00 1.82
343 344 4.715527 ACTCGTCGCTCCTACTAAAATT 57.284 40.909 0.00 0.00 0.00 1.82
344 345 4.421948 ACTCGTCGCTCCTACTAAAATTG 58.578 43.478 0.00 0.00 0.00 2.32
345 346 4.082354 ACTCGTCGCTCCTACTAAAATTGT 60.082 41.667 0.00 0.00 0.00 2.71
346 347 4.418392 TCGTCGCTCCTACTAAAATTGTC 58.582 43.478 0.00 0.00 0.00 3.18
347 348 4.082625 TCGTCGCTCCTACTAAAATTGTCA 60.083 41.667 0.00 0.00 0.00 3.58
348 349 4.624024 CGTCGCTCCTACTAAAATTGTCAA 59.376 41.667 0.00 0.00 0.00 3.18
349 350 5.291128 CGTCGCTCCTACTAAAATTGTCAAT 59.709 40.000 0.00 0.00 0.00 2.57
350 351 6.508088 CGTCGCTCCTACTAAAATTGTCAATC 60.508 42.308 0.00 0.00 0.00 2.67
351 352 5.518847 TCGCTCCTACTAAAATTGTCAATCG 59.481 40.000 0.00 0.00 0.00 3.34
352 353 5.291128 CGCTCCTACTAAAATTGTCAATCGT 59.709 40.000 0.00 0.00 0.00 3.73
353 354 6.183360 CGCTCCTACTAAAATTGTCAATCGTT 60.183 38.462 0.00 0.00 0.00 3.85
685 686 2.894919 GCCCATCGCTTTGGCATT 59.105 55.556 0.00 0.00 44.70 3.56
695 696 1.337728 GCTTTGGCATTGTACCCAACC 60.338 52.381 1.25 0.00 40.60 3.77
701 702 2.420967 GGCATTGTACCCAACCTACGAT 60.421 50.000 0.00 0.00 32.26 3.73
705 706 5.354792 GCATTGTACCCAACCTACGATTTTA 59.645 40.000 0.00 0.00 32.26 1.52
707 708 7.415877 GCATTGTACCCAACCTACGATTTTAAT 60.416 37.037 0.00 0.00 32.26 1.40
753 758 9.134734 TCAGAAAATTGAACAAAAAGTGTGTAC 57.865 29.630 0.00 0.00 40.60 2.90
769 774 5.010820 AGTGTGTACTAGTTCTTTCCCAGAC 59.989 44.000 0.00 0.00 34.74 3.51
785 790 3.573538 CCCAGACAAATCCACACATTTCA 59.426 43.478 0.00 0.00 0.00 2.69
817 822 4.891756 AGCCCATTACAATCCAATTCAGAG 59.108 41.667 0.00 0.00 0.00 3.35
823 828 3.883669 ACAATCCAATTCAGAGGAGAGC 58.116 45.455 0.00 0.00 37.34 4.09
843 848 2.692041 GCTCAGCCCATTAGAAATGCTT 59.308 45.455 0.00 0.00 0.00 3.91
858 1037 1.981256 TGCTTTTCTTGTCCCTGGAC 58.019 50.000 9.44 9.44 44.77 4.02
860 1039 1.478654 GCTTTTCTTGTCCCTGGACCA 60.479 52.381 13.59 1.88 43.97 4.02
861 1040 2.819348 GCTTTTCTTGTCCCTGGACCAT 60.819 50.000 13.59 0.00 43.97 3.55
868 1238 1.165782 TCCCTGGACCATTTCCCCT 59.834 57.895 0.00 0.00 45.17 4.79
888 1260 0.765510 CTTTCCCCCGGAATCCCTAG 59.234 60.000 0.73 0.00 41.71 3.02
889 1261 1.350310 TTTCCCCCGGAATCCCTAGC 61.350 60.000 0.73 0.00 41.71 3.42
890 1262 2.122369 CCCCCGGAATCCCTAGCT 60.122 66.667 0.73 0.00 0.00 3.32
891 1263 2.520536 CCCCCGGAATCCCTAGCTG 61.521 68.421 0.73 0.00 0.00 4.24
892 1264 2.427753 CCCGGAATCCCTAGCTGC 59.572 66.667 0.73 0.00 0.00 5.25
893 1265 2.143419 CCCGGAATCCCTAGCTGCT 61.143 63.158 0.73 7.57 0.00 4.24
894 1266 1.070445 CCGGAATCCCTAGCTGCTG 59.930 63.158 13.43 2.21 0.00 4.41
895 1267 1.596477 CGGAATCCCTAGCTGCTGC 60.596 63.158 13.43 7.62 40.05 5.25
931 1306 0.531974 GCCGCCATTCGATCTACCAA 60.532 55.000 0.00 0.00 41.67 3.67
942 1318 3.764434 TCGATCTACCAACTCTGCTTCTT 59.236 43.478 0.00 0.00 0.00 2.52
959 1335 2.050144 TCTTCTTGGTGCTGTTCCTCT 58.950 47.619 0.00 0.00 0.00 3.69
992 1368 5.516984 TCCGGTAACTAAATCCTCTTCTCT 58.483 41.667 0.00 0.00 0.00 3.10
1001 1377 7.853299 ACTAAATCCTCTTCTCTTTCCTTACC 58.147 38.462 0.00 0.00 0.00 2.85
1035 1411 5.625311 GTCTACTTTTCAAGTTTCCATTGCG 59.375 40.000 0.00 0.00 42.81 4.85
1040 1416 1.901464 AAGTTTCCATTGCGCCGGT 60.901 52.632 4.18 0.00 0.00 5.28
1105 1483 1.652167 GGTTTGCAGCTAGCTGAGGC 61.652 60.000 41.87 29.13 46.30 4.70
1106 1484 1.377725 TTTGCAGCTAGCTGAGGCC 60.378 57.895 41.87 26.48 46.30 5.19
1107 1485 1.845627 TTTGCAGCTAGCTGAGGCCT 61.846 55.000 41.87 3.86 46.30 5.19
1108 1486 2.203042 GCAGCTAGCTGAGGCCTG 60.203 66.667 41.87 19.70 46.30 4.85
1109 1487 2.729479 GCAGCTAGCTGAGGCCTGA 61.729 63.158 41.87 0.00 46.30 3.86
1110 1488 1.442567 CAGCTAGCTGAGGCCTGAG 59.557 63.158 36.47 15.90 46.30 3.35
1111 1489 1.761667 AGCTAGCTGAGGCCTGAGG 60.762 63.158 21.61 5.46 39.73 3.86
1152 1596 0.391263 ATGAGGTTCCGACGCCTTTC 60.391 55.000 0.00 0.00 34.81 2.62
1394 1842 3.760035 GGCCTTCCAGAGCGACGA 61.760 66.667 0.00 0.00 0.00 4.20
1396 1844 2.962569 CCTTCCAGAGCGACGACA 59.037 61.111 0.00 0.00 0.00 4.35
1441 1889 4.760047 GCCGCTTCCTCCGCAAGA 62.760 66.667 0.00 0.00 43.02 3.02
1550 1998 1.901085 GCGTCCTCAACCCTCTCAT 59.099 57.895 0.00 0.00 0.00 2.90
1626 2074 2.743928 CTCTTCTGTGGCGGCACC 60.744 66.667 35.54 19.93 39.84 5.01
1706 2202 3.281395 CAAACGTTTCGCCCCCGT 61.281 61.111 11.37 0.00 36.17 5.28
1725 2221 2.093625 CGTGACCACCAACGATGTTATG 59.906 50.000 0.00 0.00 0.00 1.90
1848 2344 2.751166 TGTCAGAGCAGCTTAAGGTC 57.249 50.000 3.68 0.34 0.00 3.85
1997 2508 2.036733 TCGAACCAACGGAGAAACAGAT 59.963 45.455 0.00 0.00 0.00 2.90
2407 2925 1.228154 GCCTTGACTTGTTCCGGGT 60.228 57.895 0.00 0.00 0.00 5.28
2477 3010 3.251972 GCTGCTTAATTAGGAGGACATGC 59.748 47.826 0.00 0.00 42.22 4.06
2551 3149 7.259882 TCTTAGCCATGCAATCTTGTTATTTG 58.740 34.615 0.00 0.00 0.00 2.32
2629 3271 4.209112 CGCGAAGAAACCTGTTTTAGAAC 58.791 43.478 0.00 0.00 36.29 3.01
2700 3349 9.836864 TGTAATCTTTCATGATTAGTGTATGCT 57.163 29.630 0.00 0.00 38.93 3.79
2703 3352 8.969260 ATCTTTCATGATTAGTGTATGCTTCA 57.031 30.769 0.00 0.00 0.00 3.02
2704 3353 8.969260 TCTTTCATGATTAGTGTATGCTTCAT 57.031 30.769 0.00 0.00 0.00 2.57
2705 3354 8.833493 TCTTTCATGATTAGTGTATGCTTCATG 58.167 33.333 0.00 0.00 40.98 3.07
2706 3355 6.549912 TCATGATTAGTGTATGCTTCATGC 57.450 37.500 0.00 0.00 39.98 4.06
2707 3356 5.471116 TCATGATTAGTGTATGCTTCATGCC 59.529 40.000 0.00 0.00 39.98 4.40
2746 3399 4.462508 TTTGCTTTTGTGACACAATGGA 57.537 36.364 21.19 15.03 38.00 3.41
2832 5334 6.924111 ACGTGCTTTGGATTTATGAAAAGAT 58.076 32.000 0.00 0.00 32.53 2.40
2899 5401 8.762645 TGTAGATTCAGATGTCCTGTTCTTAAT 58.237 33.333 0.00 0.00 43.38 1.40
2941 5443 0.029834 CAACAGCAGGCACAGAACAC 59.970 55.000 0.00 0.00 0.00 3.32
2967 5564 6.365520 AGTTTGATACTTTGGAACCTTGACT 58.634 36.000 0.00 0.00 31.29 3.41
2969 5566 7.996644 AGTTTGATACTTTGGAACCTTGACTAA 59.003 33.333 0.00 0.00 31.29 2.24
2992 5589 7.410120 AATGGGTTAAATTCTTCATCTCCAC 57.590 36.000 0.00 0.00 0.00 4.02
2999 5596 8.734386 GTTAAATTCTTCATCTCCACAACTGAT 58.266 33.333 0.00 0.00 0.00 2.90
3042 5639 6.573664 AAAATGATTGTGTAGCTGCTGTAA 57.426 33.333 13.43 2.46 0.00 2.41
3064 5661 7.615365 TGTAATTTAGCTTGTTGGAATGGATCT 59.385 33.333 0.00 0.00 0.00 2.75
3127 5724 3.294493 CGGGCCCAGGTTTGTGTG 61.294 66.667 24.92 0.00 0.00 3.82
3128 5725 3.615709 GGGCCCAGGTTTGTGTGC 61.616 66.667 19.95 0.00 0.00 4.57
3129 5726 2.521708 GGCCCAGGTTTGTGTGCT 60.522 61.111 0.00 0.00 0.00 4.40
3130 5727 2.133641 GGCCCAGGTTTGTGTGCTT 61.134 57.895 0.00 0.00 0.00 3.91
3131 5728 1.363807 GCCCAGGTTTGTGTGCTTC 59.636 57.895 0.00 0.00 0.00 3.86
3132 5729 1.109323 GCCCAGGTTTGTGTGCTTCT 61.109 55.000 0.00 0.00 0.00 2.85
3133 5730 0.670162 CCCAGGTTTGTGTGCTTCTG 59.330 55.000 0.00 0.00 0.00 3.02
3134 5731 0.670162 CCAGGTTTGTGTGCTTCTGG 59.330 55.000 0.00 0.00 36.28 3.86
3135 5732 0.670162 CAGGTTTGTGTGCTTCTGGG 59.330 55.000 0.00 0.00 0.00 4.45
3136 5733 0.258774 AGGTTTGTGTGCTTCTGGGT 59.741 50.000 0.00 0.00 0.00 4.51
3137 5734 0.668535 GGTTTGTGTGCTTCTGGGTC 59.331 55.000 0.00 0.00 0.00 4.46
3138 5735 1.680338 GTTTGTGTGCTTCTGGGTCT 58.320 50.000 0.00 0.00 0.00 3.85
3139 5736 2.486548 GGTTTGTGTGCTTCTGGGTCTA 60.487 50.000 0.00 0.00 0.00 2.59
3340 5937 0.703488 TCCAAGATCATTGTGGCCCA 59.297 50.000 0.00 0.00 32.10 5.36
3438 6035 7.633789 TCTGCTTCCCTACTTTATTCTCATTT 58.366 34.615 0.00 0.00 0.00 2.32
3577 6176 3.181487 ACCATTCACAAAACTGACAGTGC 60.181 43.478 9.33 0.00 32.25 4.40
3629 6228 9.860898 AAAATAATAATTGAGCACACTCCTTTC 57.139 29.630 0.00 0.00 42.74 2.62
3630 6229 8.814038 AATAATAATTGAGCACACTCCTTTCT 57.186 30.769 0.00 0.00 42.74 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.752187 AGTTTGTGAATATATTGCATTGGAAGT 58.248 29.630 1.78 0.00 0.00 3.01
3 4 9.590451 AAGTTTGTGAATATATTGCATTGGAAG 57.410 29.630 1.78 0.00 0.00 3.46
4 5 9.585099 GAAGTTTGTGAATATATTGCATTGGAA 57.415 29.630 1.78 0.00 0.00 3.53
5 6 7.914871 CGAAGTTTGTGAATATATTGCATTGGA 59.085 33.333 1.78 0.00 0.00 3.53
6 7 7.914871 TCGAAGTTTGTGAATATATTGCATTGG 59.085 33.333 1.78 0.00 0.00 3.16
8 9 8.458052 TGTCGAAGTTTGTGAATATATTGCATT 58.542 29.630 1.78 0.00 0.00 3.56
9 10 7.984391 TGTCGAAGTTTGTGAATATATTGCAT 58.016 30.769 1.78 0.00 0.00 3.96
10 11 7.371126 TGTCGAAGTTTGTGAATATATTGCA 57.629 32.000 1.78 0.00 0.00 4.08
11 12 9.929722 TTATGTCGAAGTTTGTGAATATATTGC 57.070 29.630 1.78 0.00 0.00 3.56
16 17 9.773328 CACAATTATGTCGAAGTTTGTGAATAT 57.227 29.630 16.60 0.00 44.01 1.28
17 18 8.779303 ACACAATTATGTCGAAGTTTGTGAATA 58.221 29.630 23.31 0.00 44.01 1.75
18 19 7.648142 ACACAATTATGTCGAAGTTTGTGAAT 58.352 30.769 23.31 8.81 44.01 2.57
19 20 7.022055 ACACAATTATGTCGAAGTTTGTGAA 57.978 32.000 23.31 0.00 44.01 3.18
20 21 6.612247 ACACAATTATGTCGAAGTTTGTGA 57.388 33.333 23.31 0.00 44.01 3.58
21 22 7.530525 CAGTACACAATTATGTCGAAGTTTGTG 59.469 37.037 18.51 18.51 45.72 3.33
22 23 7.572759 CAGTACACAATTATGTCGAAGTTTGT 58.427 34.615 0.00 0.00 37.82 2.83
23 24 6.519761 GCAGTACACAATTATGTCGAAGTTTG 59.480 38.462 0.00 0.00 37.82 2.93
24 25 6.426937 AGCAGTACACAATTATGTCGAAGTTT 59.573 34.615 0.00 0.00 37.82 2.66
25 26 5.932303 AGCAGTACACAATTATGTCGAAGTT 59.068 36.000 0.00 0.00 37.82 2.66
26 27 5.479306 AGCAGTACACAATTATGTCGAAGT 58.521 37.500 0.00 0.00 37.82 3.01
27 28 5.807520 AGAGCAGTACACAATTATGTCGAAG 59.192 40.000 0.00 0.00 37.82 3.79
28 29 5.720202 AGAGCAGTACACAATTATGTCGAA 58.280 37.500 0.00 0.00 37.82 3.71
29 30 5.324784 AGAGCAGTACACAATTATGTCGA 57.675 39.130 0.00 0.00 37.82 4.20
30 31 4.504461 GGAGAGCAGTACACAATTATGTCG 59.496 45.833 0.00 0.00 37.82 4.35
31 32 4.811557 GGGAGAGCAGTACACAATTATGTC 59.188 45.833 0.00 0.00 37.82 3.06
32 33 4.471386 AGGGAGAGCAGTACACAATTATGT 59.529 41.667 0.00 0.00 41.61 2.29
33 34 4.813161 CAGGGAGAGCAGTACACAATTATG 59.187 45.833 0.00 0.00 0.00 1.90
34 35 4.471386 ACAGGGAGAGCAGTACACAATTAT 59.529 41.667 0.00 0.00 0.00 1.28
35 36 3.838317 ACAGGGAGAGCAGTACACAATTA 59.162 43.478 0.00 0.00 0.00 1.40
36 37 2.639839 ACAGGGAGAGCAGTACACAATT 59.360 45.455 0.00 0.00 0.00 2.32
37 38 2.234908 GACAGGGAGAGCAGTACACAAT 59.765 50.000 0.00 0.00 0.00 2.71
38 39 1.618837 GACAGGGAGAGCAGTACACAA 59.381 52.381 0.00 0.00 0.00 3.33
39 40 1.257743 GACAGGGAGAGCAGTACACA 58.742 55.000 0.00 0.00 0.00 3.72
40 41 0.533032 GGACAGGGAGAGCAGTACAC 59.467 60.000 0.00 0.00 0.00 2.90
41 42 0.614979 GGGACAGGGAGAGCAGTACA 60.615 60.000 0.00 0.00 0.00 2.90
42 43 0.614979 TGGGACAGGGAGAGCAGTAC 60.615 60.000 0.00 0.00 0.00 2.73
43 44 1.781001 TGGGACAGGGAGAGCAGTA 59.219 57.895 0.00 0.00 0.00 2.74
44 45 2.533435 TGGGACAGGGAGAGCAGT 59.467 61.111 0.00 0.00 0.00 4.40
67 68 9.168451 TGAAGTGTAGTGTGAAAAATGTTCTTA 57.832 29.630 0.00 0.00 0.00 2.10
68 69 8.050778 TGAAGTGTAGTGTGAAAAATGTTCTT 57.949 30.769 0.00 0.00 0.00 2.52
69 70 7.624360 TGAAGTGTAGTGTGAAAAATGTTCT 57.376 32.000 0.00 0.00 0.00 3.01
70 71 6.414987 GCTGAAGTGTAGTGTGAAAAATGTTC 59.585 38.462 0.00 0.00 0.00 3.18
71 72 6.095440 AGCTGAAGTGTAGTGTGAAAAATGTT 59.905 34.615 0.00 0.00 0.00 2.71
72 73 5.590259 AGCTGAAGTGTAGTGTGAAAAATGT 59.410 36.000 0.00 0.00 0.00 2.71
73 74 6.064846 AGCTGAAGTGTAGTGTGAAAAATG 57.935 37.500 0.00 0.00 0.00 2.32
74 75 6.699575 AAGCTGAAGTGTAGTGTGAAAAAT 57.300 33.333 0.00 0.00 0.00 1.82
75 76 6.509418 AAAGCTGAAGTGTAGTGTGAAAAA 57.491 33.333 0.00 0.00 0.00 1.94
76 77 6.509418 AAAAGCTGAAGTGTAGTGTGAAAA 57.491 33.333 0.00 0.00 0.00 2.29
77 78 6.821665 ACTAAAAGCTGAAGTGTAGTGTGAAA 59.178 34.615 0.00 0.00 0.00 2.69
78 79 6.346096 ACTAAAAGCTGAAGTGTAGTGTGAA 58.654 36.000 0.00 0.00 0.00 3.18
79 80 5.914033 ACTAAAAGCTGAAGTGTAGTGTGA 58.086 37.500 0.00 0.00 0.00 3.58
80 81 6.604735 AACTAAAAGCTGAAGTGTAGTGTG 57.395 37.500 0.00 0.00 0.00 3.82
81 82 7.335924 TGAAAACTAAAAGCTGAAGTGTAGTGT 59.664 33.333 0.00 0.00 0.00 3.55
82 83 7.693952 TGAAAACTAAAAGCTGAAGTGTAGTG 58.306 34.615 0.00 0.00 0.00 2.74
83 84 7.769044 TCTGAAAACTAAAAGCTGAAGTGTAGT 59.231 33.333 0.00 0.00 0.00 2.73
84 85 8.142994 TCTGAAAACTAAAAGCTGAAGTGTAG 57.857 34.615 0.00 0.00 0.00 2.74
85 86 8.677148 ATCTGAAAACTAAAAGCTGAAGTGTA 57.323 30.769 0.00 0.00 0.00 2.90
86 87 7.573968 ATCTGAAAACTAAAAGCTGAAGTGT 57.426 32.000 0.00 0.00 0.00 3.55
98 99 9.443323 TCGGATGTTTGAATATCTGAAAACTAA 57.557 29.630 8.88 0.00 38.47 2.24
99 100 8.879759 GTCGGATGTTTGAATATCTGAAAACTA 58.120 33.333 11.90 0.00 41.57 2.24
100 101 7.607991 AGTCGGATGTTTGAATATCTGAAAACT 59.392 33.333 11.90 5.42 41.57 2.66
101 102 7.752695 AGTCGGATGTTTGAATATCTGAAAAC 58.247 34.615 11.90 3.67 41.57 2.43
102 103 7.921786 AGTCGGATGTTTGAATATCTGAAAA 57.078 32.000 11.90 0.00 41.57 2.29
103 104 7.921786 AAGTCGGATGTTTGAATATCTGAAA 57.078 32.000 11.90 0.00 41.57 2.69
104 105 8.474831 TCTAAGTCGGATGTTTGAATATCTGAA 58.525 33.333 11.90 0.01 41.57 3.02
105 106 8.007405 TCTAAGTCGGATGTTTGAATATCTGA 57.993 34.615 7.62 7.62 38.91 3.27
106 107 7.923344 ACTCTAAGTCGGATGTTTGAATATCTG 59.077 37.037 3.65 3.65 35.10 2.90
107 108 7.923344 CACTCTAAGTCGGATGTTTGAATATCT 59.077 37.037 1.41 0.00 0.00 1.98
108 109 7.921214 TCACTCTAAGTCGGATGTTTGAATATC 59.079 37.037 0.00 0.00 0.00 1.63
109 110 7.782049 TCACTCTAAGTCGGATGTTTGAATAT 58.218 34.615 0.00 0.00 0.00 1.28
110 111 7.165460 TCACTCTAAGTCGGATGTTTGAATA 57.835 36.000 0.00 0.00 0.00 1.75
111 112 6.037786 TCACTCTAAGTCGGATGTTTGAAT 57.962 37.500 0.00 0.00 0.00 2.57
112 113 5.462530 TCACTCTAAGTCGGATGTTTGAA 57.537 39.130 0.00 0.00 0.00 2.69
113 114 4.082190 CCTCACTCTAAGTCGGATGTTTGA 60.082 45.833 0.00 0.00 0.00 2.69
114 115 4.177026 CCTCACTCTAAGTCGGATGTTTG 58.823 47.826 0.00 0.00 0.00 2.93
115 116 3.195825 CCCTCACTCTAAGTCGGATGTTT 59.804 47.826 0.00 0.00 0.00 2.83
116 117 2.761208 CCCTCACTCTAAGTCGGATGTT 59.239 50.000 0.00 0.00 0.00 2.71
117 118 2.025226 TCCCTCACTCTAAGTCGGATGT 60.025 50.000 0.00 0.00 0.00 3.06
118 119 2.621055 CTCCCTCACTCTAAGTCGGATG 59.379 54.545 0.00 0.00 0.00 3.51
119 120 2.938838 CTCCCTCACTCTAAGTCGGAT 58.061 52.381 0.00 0.00 0.00 4.18
120 121 1.682394 GCTCCCTCACTCTAAGTCGGA 60.682 57.143 0.00 0.00 0.00 4.55
121 122 0.741915 GCTCCCTCACTCTAAGTCGG 59.258 60.000 0.00 0.00 0.00 4.79
122 123 1.403679 CTGCTCCCTCACTCTAAGTCG 59.596 57.143 0.00 0.00 0.00 4.18
123 124 2.452505 ACTGCTCCCTCACTCTAAGTC 58.547 52.381 0.00 0.00 0.00 3.01
124 125 2.564947 CAACTGCTCCCTCACTCTAAGT 59.435 50.000 0.00 0.00 0.00 2.24
125 126 2.564947 ACAACTGCTCCCTCACTCTAAG 59.435 50.000 0.00 0.00 0.00 2.18
126 127 2.609747 ACAACTGCTCCCTCACTCTAA 58.390 47.619 0.00 0.00 0.00 2.10
127 128 2.310779 ACAACTGCTCCCTCACTCTA 57.689 50.000 0.00 0.00 0.00 2.43
128 129 1.346068 GAACAACTGCTCCCTCACTCT 59.654 52.381 0.00 0.00 0.00 3.24
129 130 1.609320 GGAACAACTGCTCCCTCACTC 60.609 57.143 0.00 0.00 0.00 3.51
130 131 0.398318 GGAACAACTGCTCCCTCACT 59.602 55.000 0.00 0.00 0.00 3.41
131 132 0.108585 TGGAACAACTGCTCCCTCAC 59.891 55.000 0.00 0.00 31.92 3.51
132 133 0.397941 CTGGAACAACTGCTCCCTCA 59.602 55.000 0.00 0.00 38.70 3.86
133 134 0.957888 GCTGGAACAACTGCTCCCTC 60.958 60.000 0.00 0.00 38.70 4.30
134 135 1.073897 GCTGGAACAACTGCTCCCT 59.926 57.895 0.00 0.00 38.70 4.20
135 136 1.973812 GGCTGGAACAACTGCTCCC 60.974 63.158 0.00 0.00 38.70 4.30
136 137 0.538287 AAGGCTGGAACAACTGCTCC 60.538 55.000 0.00 0.00 38.70 4.70
137 138 0.877743 GAAGGCTGGAACAACTGCTC 59.122 55.000 0.00 0.00 38.70 4.26
138 139 0.183492 TGAAGGCTGGAACAACTGCT 59.817 50.000 0.00 0.00 38.70 4.24
139 140 1.251251 ATGAAGGCTGGAACAACTGC 58.749 50.000 0.00 0.00 38.70 4.40
140 141 6.949352 AATATATGAAGGCTGGAACAACTG 57.051 37.500 0.00 0.00 38.70 3.16
141 142 7.961326 AAAATATATGAAGGCTGGAACAACT 57.039 32.000 0.00 0.00 38.70 3.16
167 168 9.482627 CAAAAGTTTTATAGCCACAATAACCAA 57.517 29.630 0.00 0.00 0.00 3.67
168 169 7.600752 GCAAAAGTTTTATAGCCACAATAACCA 59.399 33.333 0.00 0.00 0.00 3.67
169 170 7.064134 GGCAAAAGTTTTATAGCCACAATAACC 59.936 37.037 18.53 0.00 41.63 2.85
170 171 7.201401 CGGCAAAAGTTTTATAGCCACAATAAC 60.201 37.037 21.52 0.00 42.10 1.89
171 172 6.809196 CGGCAAAAGTTTTATAGCCACAATAA 59.191 34.615 21.52 0.00 42.10 1.40
172 173 6.151312 TCGGCAAAAGTTTTATAGCCACAATA 59.849 34.615 21.52 5.21 42.10 1.90
173 174 5.047660 TCGGCAAAAGTTTTATAGCCACAAT 60.048 36.000 21.52 0.00 42.10 2.71
174 175 4.278669 TCGGCAAAAGTTTTATAGCCACAA 59.721 37.500 21.52 8.85 42.10 3.33
175 176 3.821600 TCGGCAAAAGTTTTATAGCCACA 59.178 39.130 21.52 9.57 42.10 4.17
176 177 4.082949 AGTCGGCAAAAGTTTTATAGCCAC 60.083 41.667 21.52 18.08 42.10 5.01
177 178 4.076394 AGTCGGCAAAAGTTTTATAGCCA 58.924 39.130 21.52 10.59 42.10 4.75
178 179 4.395231 AGAGTCGGCAAAAGTTTTATAGCC 59.605 41.667 15.06 15.06 38.73 3.93
179 180 5.547181 AGAGTCGGCAAAAGTTTTATAGC 57.453 39.130 0.00 0.60 0.00 2.97
180 181 7.829378 AGTAGAGTCGGCAAAAGTTTTATAG 57.171 36.000 0.00 0.00 0.00 1.31
181 182 8.742777 TCTAGTAGAGTCGGCAAAAGTTTTATA 58.257 33.333 0.00 0.00 0.00 0.98
182 183 7.609056 TCTAGTAGAGTCGGCAAAAGTTTTAT 58.391 34.615 0.00 0.00 0.00 1.40
183 184 6.985117 TCTAGTAGAGTCGGCAAAAGTTTTA 58.015 36.000 0.00 0.00 0.00 1.52
184 185 5.850614 TCTAGTAGAGTCGGCAAAAGTTTT 58.149 37.500 0.00 0.00 0.00 2.43
185 186 5.464030 TCTAGTAGAGTCGGCAAAAGTTT 57.536 39.130 0.00 0.00 0.00 2.66
186 187 5.061920 CTCTAGTAGAGTCGGCAAAAGTT 57.938 43.478 17.70 0.00 37.57 2.66
187 188 4.705337 CTCTAGTAGAGTCGGCAAAAGT 57.295 45.455 17.70 0.00 37.57 2.66
199 200 7.966339 TGGGTATAAAAGCAACTCTAGTAGA 57.034 36.000 0.00 0.00 0.00 2.59
200 201 7.494952 GGTTGGGTATAAAAGCAACTCTAGTAG 59.505 40.741 0.00 0.00 0.00 2.57
201 202 7.181485 AGGTTGGGTATAAAAGCAACTCTAGTA 59.819 37.037 0.00 0.00 0.00 1.82
202 203 6.012771 AGGTTGGGTATAAAAGCAACTCTAGT 60.013 38.462 0.00 0.00 0.00 2.57
203 204 6.415573 AGGTTGGGTATAAAAGCAACTCTAG 58.584 40.000 0.00 0.00 0.00 2.43
204 205 6.382919 AGGTTGGGTATAAAAGCAACTCTA 57.617 37.500 0.00 0.00 0.00 2.43
205 206 5.256806 AGGTTGGGTATAAAAGCAACTCT 57.743 39.130 0.00 0.00 0.00 3.24
206 207 5.064325 CGTAGGTTGGGTATAAAAGCAACTC 59.936 44.000 0.00 0.00 0.00 3.01
207 208 4.939439 CGTAGGTTGGGTATAAAAGCAACT 59.061 41.667 0.00 0.00 0.00 3.16
208 209 4.937015 TCGTAGGTTGGGTATAAAAGCAAC 59.063 41.667 0.00 0.00 0.00 4.17
209 210 5.163281 TCGTAGGTTGGGTATAAAAGCAA 57.837 39.130 0.00 0.00 0.00 3.91
210 211 4.822685 TCGTAGGTTGGGTATAAAAGCA 57.177 40.909 0.00 0.00 0.00 3.91
211 212 6.688637 AAATCGTAGGTTGGGTATAAAAGC 57.311 37.500 0.00 0.00 0.00 3.51
212 213 8.271312 TGAAAATCGTAGGTTGGGTATAAAAG 57.729 34.615 0.00 0.00 0.00 2.27
213 214 8.810990 ATGAAAATCGTAGGTTGGGTATAAAA 57.189 30.769 0.00 0.00 0.00 1.52
214 215 8.047911 TGATGAAAATCGTAGGTTGGGTATAAA 58.952 33.333 0.00 0.00 0.00 1.40
215 216 7.566569 TGATGAAAATCGTAGGTTGGGTATAA 58.433 34.615 0.00 0.00 0.00 0.98
216 217 7.127012 TGATGAAAATCGTAGGTTGGGTATA 57.873 36.000 0.00 0.00 0.00 1.47
217 218 5.996644 TGATGAAAATCGTAGGTTGGGTAT 58.003 37.500 0.00 0.00 0.00 2.73
218 219 5.423704 TGATGAAAATCGTAGGTTGGGTA 57.576 39.130 0.00 0.00 0.00 3.69
219 220 4.295141 TGATGAAAATCGTAGGTTGGGT 57.705 40.909 0.00 0.00 0.00 4.51
220 221 5.637006 TTTGATGAAAATCGTAGGTTGGG 57.363 39.130 0.00 0.00 0.00 4.12
221 222 6.677913 ACTTTTGATGAAAATCGTAGGTTGG 58.322 36.000 0.00 0.00 30.59 3.77
222 223 7.359595 TGACTTTTGATGAAAATCGTAGGTTG 58.640 34.615 0.00 0.00 30.59 3.77
223 224 7.504924 TGACTTTTGATGAAAATCGTAGGTT 57.495 32.000 0.00 0.00 30.59 3.50
224 225 7.413000 CGATGACTTTTGATGAAAATCGTAGGT 60.413 37.037 3.81 0.00 33.76 3.08
225 226 6.901887 CGATGACTTTTGATGAAAATCGTAGG 59.098 38.462 3.81 0.00 33.76 3.18
226 227 6.409185 GCGATGACTTTTGATGAAAATCGTAG 59.591 38.462 11.07 5.81 37.60 3.51
227 228 6.247903 GCGATGACTTTTGATGAAAATCGTA 58.752 36.000 11.07 0.00 37.60 3.43
228 229 5.088739 GCGATGACTTTTGATGAAAATCGT 58.911 37.500 11.07 4.49 37.60 3.73
229 230 4.496895 GGCGATGACTTTTGATGAAAATCG 59.503 41.667 6.71 6.71 38.00 3.34
230 231 5.401550 TGGCGATGACTTTTGATGAAAATC 58.598 37.500 0.00 0.00 30.59 2.17
231 232 5.047802 ACTGGCGATGACTTTTGATGAAAAT 60.048 36.000 0.00 0.00 30.59 1.82
232 233 4.278170 ACTGGCGATGACTTTTGATGAAAA 59.722 37.500 0.00 0.00 0.00 2.29
233 234 3.820467 ACTGGCGATGACTTTTGATGAAA 59.180 39.130 0.00 0.00 0.00 2.69
234 235 3.189080 CACTGGCGATGACTTTTGATGAA 59.811 43.478 0.00 0.00 0.00 2.57
235 236 2.743664 CACTGGCGATGACTTTTGATGA 59.256 45.455 0.00 0.00 0.00 2.92
236 237 2.159476 CCACTGGCGATGACTTTTGATG 60.159 50.000 0.00 0.00 0.00 3.07
237 238 2.086869 CCACTGGCGATGACTTTTGAT 58.913 47.619 0.00 0.00 0.00 2.57
238 239 1.522668 CCACTGGCGATGACTTTTGA 58.477 50.000 0.00 0.00 0.00 2.69
239 240 0.109597 GCCACTGGCGATGACTTTTG 60.110 55.000 3.73 0.00 39.62 2.44
240 241 2.257353 GCCACTGGCGATGACTTTT 58.743 52.632 3.73 0.00 39.62 2.27
241 242 3.987404 GCCACTGGCGATGACTTT 58.013 55.556 3.73 0.00 39.62 2.66
250 251 4.767255 CCTGACTCCGCCACTGGC 62.767 72.222 10.35 10.35 46.75 4.85
251 252 1.903877 AATCCTGACTCCGCCACTGG 61.904 60.000 0.00 0.00 0.00 4.00
252 253 0.460987 GAATCCTGACTCCGCCACTG 60.461 60.000 0.00 0.00 0.00 3.66
253 254 1.901085 GAATCCTGACTCCGCCACT 59.099 57.895 0.00 0.00 0.00 4.00
254 255 1.519455 CGAATCCTGACTCCGCCAC 60.519 63.158 0.00 0.00 0.00 5.01
255 256 1.667154 CTCGAATCCTGACTCCGCCA 61.667 60.000 0.00 0.00 0.00 5.69
256 257 1.066587 CTCGAATCCTGACTCCGCC 59.933 63.158 0.00 0.00 0.00 6.13
257 258 1.022735 TACTCGAATCCTGACTCCGC 58.977 55.000 0.00 0.00 0.00 5.54
258 259 4.316645 TCTATACTCGAATCCTGACTCCG 58.683 47.826 0.00 0.00 0.00 4.63
259 260 4.698304 CCTCTATACTCGAATCCTGACTCC 59.302 50.000 0.00 0.00 0.00 3.85
260 261 4.698304 CCCTCTATACTCGAATCCTGACTC 59.302 50.000 0.00 0.00 0.00 3.36
261 262 4.507691 CCCCTCTATACTCGAATCCTGACT 60.508 50.000 0.00 0.00 0.00 3.41
262 263 3.759618 CCCCTCTATACTCGAATCCTGAC 59.240 52.174 0.00 0.00 0.00 3.51
263 264 3.245300 CCCCCTCTATACTCGAATCCTGA 60.245 52.174 0.00 0.00 0.00 3.86
264 265 3.093057 CCCCCTCTATACTCGAATCCTG 58.907 54.545 0.00 0.00 0.00 3.86
265 266 2.557901 GCCCCCTCTATACTCGAATCCT 60.558 54.545 0.00 0.00 0.00 3.24
266 267 1.826096 GCCCCCTCTATACTCGAATCC 59.174 57.143 0.00 0.00 0.00 3.01
267 268 1.826096 GGCCCCCTCTATACTCGAATC 59.174 57.143 0.00 0.00 0.00 2.52
268 269 1.891450 CGGCCCCCTCTATACTCGAAT 60.891 57.143 0.00 0.00 0.00 3.34
269 270 0.538977 CGGCCCCCTCTATACTCGAA 60.539 60.000 0.00 0.00 0.00 3.71
270 271 1.074423 CGGCCCCCTCTATACTCGA 59.926 63.158 0.00 0.00 0.00 4.04
271 272 0.961358 CTCGGCCCCCTCTATACTCG 60.961 65.000 0.00 0.00 0.00 4.18
272 273 0.112801 ACTCGGCCCCCTCTATACTC 59.887 60.000 0.00 0.00 0.00 2.59
273 274 1.075212 GTACTCGGCCCCCTCTATACT 59.925 57.143 0.00 0.00 0.00 2.12
274 275 1.543607 GTACTCGGCCCCCTCTATAC 58.456 60.000 0.00 0.00 0.00 1.47
275 276 0.037303 CGTACTCGGCCCCCTCTATA 59.963 60.000 0.00 0.00 0.00 1.31
276 277 1.228490 CGTACTCGGCCCCCTCTAT 60.228 63.158 0.00 0.00 0.00 1.98
277 278 1.344953 TACGTACTCGGCCCCCTCTA 61.345 60.000 0.00 0.00 41.85 2.43
278 279 2.004408 ATACGTACTCGGCCCCCTCT 62.004 60.000 0.00 0.00 41.85 3.69
279 280 0.250901 TATACGTACTCGGCCCCCTC 60.251 60.000 0.00 0.00 41.85 4.30
280 281 0.407139 ATATACGTACTCGGCCCCCT 59.593 55.000 0.00 0.00 41.85 4.79
281 282 1.067354 CAATATACGTACTCGGCCCCC 60.067 57.143 0.00 0.00 41.85 5.40
282 283 1.888512 TCAATATACGTACTCGGCCCC 59.111 52.381 0.00 0.00 41.85 5.80
283 284 3.442977 AGATCAATATACGTACTCGGCCC 59.557 47.826 0.00 0.00 41.85 5.80
284 285 4.698583 AGATCAATATACGTACTCGGCC 57.301 45.455 0.00 0.00 41.85 6.13
285 286 7.695820 AGATTAGATCAATATACGTACTCGGC 58.304 38.462 0.00 0.00 41.85 5.54
286 287 8.057156 CGAGATTAGATCAATATACGTACTCGG 58.943 40.741 12.72 0.00 41.85 4.63
287 288 8.593842 ACGAGATTAGATCAATATACGTACTCG 58.406 37.037 16.73 16.73 43.75 4.18
290 291 9.275231 CCAACGAGATTAGATCAATATACGTAC 57.725 37.037 0.00 0.00 33.03 3.67
291 292 9.006839 ACCAACGAGATTAGATCAATATACGTA 57.993 33.333 0.00 0.00 33.03 3.57
292 293 7.883217 ACCAACGAGATTAGATCAATATACGT 58.117 34.615 0.00 0.00 33.98 3.57
293 294 9.836076 TTACCAACGAGATTAGATCAATATACG 57.164 33.333 0.00 0.00 0.00 3.06
299 300 9.745880 GAGTAATTACCAACGAGATTAGATCAA 57.254 33.333 12.05 0.00 0.00 2.57
300 301 8.074370 CGAGTAATTACCAACGAGATTAGATCA 58.926 37.037 12.05 0.00 0.00 2.92
301 302 8.074972 ACGAGTAATTACCAACGAGATTAGATC 58.925 37.037 23.82 7.63 0.00 2.75
302 303 7.938715 ACGAGTAATTACCAACGAGATTAGAT 58.061 34.615 23.82 0.65 0.00 1.98
303 304 7.325660 ACGAGTAATTACCAACGAGATTAGA 57.674 36.000 23.82 0.00 0.00 2.10
304 305 6.356452 CGACGAGTAATTACCAACGAGATTAG 59.644 42.308 23.82 4.99 0.00 1.73
305 306 6.194463 CGACGAGTAATTACCAACGAGATTA 58.806 40.000 23.82 0.00 0.00 1.75
306 307 5.032863 CGACGAGTAATTACCAACGAGATT 58.967 41.667 23.82 9.64 0.00 2.40
307 308 4.595116 CGACGAGTAATTACCAACGAGAT 58.405 43.478 23.82 9.89 0.00 2.75
308 309 3.728864 GCGACGAGTAATTACCAACGAGA 60.729 47.826 23.82 0.00 0.00 4.04
309 310 2.529090 GCGACGAGTAATTACCAACGAG 59.471 50.000 23.82 18.99 0.00 4.18
310 311 2.162208 AGCGACGAGTAATTACCAACGA 59.838 45.455 23.82 0.00 0.00 3.85
311 312 2.523015 AGCGACGAGTAATTACCAACG 58.477 47.619 12.05 16.20 0.00 4.10
312 313 2.856557 GGAGCGACGAGTAATTACCAAC 59.143 50.000 12.05 3.89 0.00 3.77
313 314 2.756760 AGGAGCGACGAGTAATTACCAA 59.243 45.455 12.05 0.00 0.00 3.67
314 315 2.372264 AGGAGCGACGAGTAATTACCA 58.628 47.619 12.05 0.00 0.00 3.25
315 316 3.563390 AGTAGGAGCGACGAGTAATTACC 59.437 47.826 12.05 3.36 0.00 2.85
316 317 4.809815 AGTAGGAGCGACGAGTAATTAC 57.190 45.455 7.57 7.57 0.00 1.89
317 318 6.925610 TTTAGTAGGAGCGACGAGTAATTA 57.074 37.500 0.00 0.00 0.00 1.40
318 319 5.824904 TTTAGTAGGAGCGACGAGTAATT 57.175 39.130 0.00 0.00 0.00 1.40
319 320 5.824904 TTTTAGTAGGAGCGACGAGTAAT 57.175 39.130 0.00 0.00 0.00 1.89
320 321 5.824904 ATTTTAGTAGGAGCGACGAGTAA 57.175 39.130 0.00 0.00 0.00 2.24
321 322 5.124457 ACAATTTTAGTAGGAGCGACGAGTA 59.876 40.000 0.00 0.00 0.00 2.59
322 323 4.082354 ACAATTTTAGTAGGAGCGACGAGT 60.082 41.667 0.00 0.00 0.00 4.18
323 324 4.421948 ACAATTTTAGTAGGAGCGACGAG 58.578 43.478 0.00 0.00 0.00 4.18
324 325 4.082625 TGACAATTTTAGTAGGAGCGACGA 60.083 41.667 0.00 0.00 0.00 4.20
325 326 4.171005 TGACAATTTTAGTAGGAGCGACG 58.829 43.478 0.00 0.00 0.00 5.12
326 327 6.508088 CGATTGACAATTTTAGTAGGAGCGAC 60.508 42.308 1.39 0.00 0.00 5.19
327 328 5.518847 CGATTGACAATTTTAGTAGGAGCGA 59.481 40.000 1.39 0.00 0.00 4.93
328 329 5.291128 ACGATTGACAATTTTAGTAGGAGCG 59.709 40.000 1.39 0.00 0.00 5.03
329 330 6.663944 ACGATTGACAATTTTAGTAGGAGC 57.336 37.500 1.39 0.00 0.00 4.70
657 658 3.866582 GATGGGCGGAGTCAGGGG 61.867 72.222 0.00 0.00 0.00 4.79
658 659 4.227134 CGATGGGCGGAGTCAGGG 62.227 72.222 0.00 0.00 36.03 4.45
659 660 4.899239 GCGATGGGCGGAGTCAGG 62.899 72.222 0.00 0.00 41.29 3.86
669 670 1.102154 TACAATGCCAAAGCGATGGG 58.898 50.000 12.02 0.00 44.31 4.00
670 671 1.202290 GGTACAATGCCAAAGCGATGG 60.202 52.381 6.46 6.46 44.31 3.51
685 686 7.884354 AGAAATTAAAATCGTAGGTTGGGTACA 59.116 33.333 0.00 0.00 0.00 2.90
695 696 9.749490 TTGTAGCGAAAGAAATTAAAATCGTAG 57.251 29.630 0.00 0.00 33.18 3.51
737 739 9.486857 GAAAGAACTAGTACACACTTTTTGTTC 57.513 33.333 0.00 0.00 35.67 3.18
753 758 5.412904 GTGGATTTGTCTGGGAAAGAACTAG 59.587 44.000 0.00 0.00 36.40 2.57
769 774 8.774890 TGGATATTTTGAAATGTGTGGATTTG 57.225 30.769 0.00 0.00 0.00 2.32
785 790 6.142498 TGGATTGTAATGGGCTGGATATTTT 58.858 36.000 0.00 0.00 0.00 1.82
817 822 1.418334 TCTAATGGGCTGAGCTCTCC 58.582 55.000 16.19 15.33 0.00 3.71
823 828 4.996788 AAAGCATTTCTAATGGGCTGAG 57.003 40.909 1.99 0.00 27.08 3.35
843 848 3.496331 GAAATGGTCCAGGGACAAGAAA 58.504 45.455 19.43 0.93 46.20 2.52
858 1037 0.032117 GGGGGAAAGAGGGGAAATGG 60.032 60.000 0.00 0.00 0.00 3.16
860 1039 1.580994 CCGGGGGAAAGAGGGGAAAT 61.581 60.000 0.00 0.00 0.00 2.17
861 1040 2.235761 CCGGGGGAAAGAGGGGAAA 61.236 63.158 0.00 0.00 0.00 3.13
868 1238 0.344080 TAGGGATTCCGGGGGAAAGA 59.656 55.000 0.00 0.00 45.41 2.52
920 1295 3.357203 AGAAGCAGAGTTGGTAGATCGA 58.643 45.455 0.00 0.00 33.93 3.59
925 1300 3.999663 CCAAGAAGAAGCAGAGTTGGTAG 59.000 47.826 0.00 0.00 33.93 3.18
931 1306 1.419387 AGCACCAAGAAGAAGCAGAGT 59.581 47.619 0.00 0.00 0.00 3.24
942 1318 1.131638 ACAGAGGAACAGCACCAAGA 58.868 50.000 0.00 0.00 0.00 3.02
959 1335 8.168725 AGGATTTAGTTACCGGATAGATCTACA 58.831 37.037 9.46 0.00 0.00 2.74
992 1368 1.078988 AATCGCCGCGGTAAGGAAA 60.079 52.632 28.70 4.84 0.00 3.13
1001 1377 0.719465 AAAAGTAGACAATCGCCGCG 59.281 50.000 6.39 6.39 0.00 6.46
1040 1416 1.508632 ACTTTTTAGCAAGCGAGCGA 58.491 45.000 0.00 0.00 40.15 4.93
1394 1842 2.448582 TTCACCAAGACCCGGCTGT 61.449 57.895 0.00 0.00 0.00 4.40
1396 1844 2.430367 GTTCACCAAGACCCGGCT 59.570 61.111 0.00 0.00 0.00 5.52
1527 1975 4.373116 GGGTTGAGGACGCGAGCA 62.373 66.667 15.93 1.43 0.00 4.26
1626 2074 2.073307 CACGGTGAGATTGTGCGAG 58.927 57.895 0.74 0.00 0.00 5.03
1706 2202 3.410631 ACATAACATCGTTGGTGGTCA 57.589 42.857 0.00 0.00 0.00 4.02
1725 2221 3.560068 CCGCCTTCCTCATGTAATTGTAC 59.440 47.826 0.00 0.00 0.00 2.90
1848 2344 5.821204 ACAGAGAAAAACTTGACGAAATGG 58.179 37.500 0.00 0.00 0.00 3.16
2629 3271 1.162698 CACAGATCACAAGTGGGCAG 58.837 55.000 0.00 0.00 0.00 4.85
2650 3294 2.764572 GTTCTAAGCCCTACCTGCAGTA 59.235 50.000 13.81 4.50 0.00 2.74
2700 3349 6.266131 AGTATAAAGGGATGAAGGCATGAA 57.734 37.500 0.00 0.00 34.11 2.57
2701 3350 5.912149 AGTATAAAGGGATGAAGGCATGA 57.088 39.130 0.00 0.00 34.11 3.07
2702 3351 8.517878 CAAATAGTATAAAGGGATGAAGGCATG 58.482 37.037 0.00 0.00 34.11 4.06
2703 3352 7.177392 GCAAATAGTATAAAGGGATGAAGGCAT 59.823 37.037 0.00 0.00 37.47 4.40
2704 3353 6.490040 GCAAATAGTATAAAGGGATGAAGGCA 59.510 38.462 0.00 0.00 0.00 4.75
2705 3354 6.717084 AGCAAATAGTATAAAGGGATGAAGGC 59.283 38.462 0.00 0.00 0.00 4.35
2706 3355 8.697507 AAGCAAATAGTATAAAGGGATGAAGG 57.302 34.615 0.00 0.00 0.00 3.46
2746 3399 6.405508 CCAAGCACATCTTAAATTCTCAGCAT 60.406 38.462 0.00 0.00 32.74 3.79
2832 5334 9.448438 AACAGCAACTAAATATTGTGTCTGATA 57.552 29.630 12.53 0.00 0.00 2.15
2836 5338 8.396272 AGAAACAGCAACTAAATATTGTGTCT 57.604 30.769 0.00 0.00 30.37 3.41
2899 5401 8.946085 GTTGTATTCTCATCAACACCTGATAAA 58.054 33.333 0.00 0.00 43.28 1.40
2941 5443 7.661847 AGTCAAGGTTCCAAAGTATCAAACTAG 59.338 37.037 0.00 0.00 37.50 2.57
2967 5564 8.112822 TGTGGAGATGAAGAATTTAACCCATTA 58.887 33.333 0.00 0.00 0.00 1.90
2969 5566 6.493166 TGTGGAGATGAAGAATTTAACCCAT 58.507 36.000 0.00 0.00 0.00 4.00
3023 5620 6.183360 GCTAAATTACAGCAGCTACACAATCA 60.183 38.462 0.00 0.00 38.93 2.57
3024 5621 6.037610 AGCTAAATTACAGCAGCTACACAATC 59.962 38.462 12.93 0.00 42.41 2.67
3026 5623 5.245531 AGCTAAATTACAGCAGCTACACAA 58.754 37.500 12.93 0.00 42.41 3.33
3027 5624 4.832248 AGCTAAATTACAGCAGCTACACA 58.168 39.130 12.93 0.00 42.41 3.72
3028 5625 5.122396 ACAAGCTAAATTACAGCAGCTACAC 59.878 40.000 12.93 0.00 43.39 2.90
3032 5629 4.082571 CCAACAAGCTAAATTACAGCAGCT 60.083 41.667 12.93 0.00 46.05 4.24
3033 5630 4.082787 TCCAACAAGCTAAATTACAGCAGC 60.083 41.667 12.93 2.32 41.66 5.25
3034 5631 5.627499 TCCAACAAGCTAAATTACAGCAG 57.373 39.130 12.93 8.20 41.66 4.24
3035 5632 6.389091 CATTCCAACAAGCTAAATTACAGCA 58.611 36.000 12.93 0.00 41.66 4.41
3042 5639 5.163478 GCAGATCCATTCCAACAAGCTAAAT 60.163 40.000 0.00 0.00 0.00 1.40
3064 5661 2.356278 GACCTTCAGGCCCATGCA 59.644 61.111 0.00 0.00 40.13 3.96
3114 5711 0.670162 CAGAAGCACACAAACCTGGG 59.330 55.000 0.00 0.00 0.00 4.45
3116 5713 0.670162 CCCAGAAGCACACAAACCTG 59.330 55.000 0.00 0.00 0.00 4.00
3117 5714 0.258774 ACCCAGAAGCACACAAACCT 59.741 50.000 0.00 0.00 0.00 3.50
3118 5715 0.668535 GACCCAGAAGCACACAAACC 59.331 55.000 0.00 0.00 0.00 3.27
3119 5716 1.680338 AGACCCAGAAGCACACAAAC 58.320 50.000 0.00 0.00 0.00 2.93
3120 5717 2.703536 TCTAGACCCAGAAGCACACAAA 59.296 45.455 0.00 0.00 0.00 2.83
3121 5718 2.325484 TCTAGACCCAGAAGCACACAA 58.675 47.619 0.00 0.00 0.00 3.33
3122 5719 2.009681 TCTAGACCCAGAAGCACACA 57.990 50.000 0.00 0.00 0.00 3.72
3123 5720 2.497675 TCATCTAGACCCAGAAGCACAC 59.502 50.000 0.00 0.00 0.00 3.82
3124 5721 2.820178 TCATCTAGACCCAGAAGCACA 58.180 47.619 0.00 0.00 0.00 4.57
3125 5722 3.895232 TTCATCTAGACCCAGAAGCAC 57.105 47.619 0.00 0.00 0.00 4.40
3126 5723 5.441718 AAATTCATCTAGACCCAGAAGCA 57.558 39.130 0.00 0.00 0.00 3.91
3127 5724 7.174080 GGATTAAATTCATCTAGACCCAGAAGC 59.826 40.741 0.00 0.00 0.00 3.86
3128 5725 7.663493 GGGATTAAATTCATCTAGACCCAGAAG 59.337 40.741 0.00 0.00 34.43 2.85
3129 5726 7.421382 GGGGATTAAATTCATCTAGACCCAGAA 60.421 40.741 9.28 5.86 35.78 3.02
3130 5727 6.044404 GGGGATTAAATTCATCTAGACCCAGA 59.956 42.308 9.28 0.00 35.78 3.86
3131 5728 6.183361 TGGGGATTAAATTCATCTAGACCCAG 60.183 42.308 9.28 0.00 38.28 4.45
3132 5729 5.674496 TGGGGATTAAATTCATCTAGACCCA 59.326 40.000 9.28 7.45 40.69 4.51
3133 5730 6.200878 TGGGGATTAAATTCATCTAGACCC 57.799 41.667 0.00 0.00 0.00 4.46
3134 5731 6.183361 ACCTGGGGATTAAATTCATCTAGACC 60.183 42.308 0.00 0.00 0.00 3.85
3135 5732 6.842676 ACCTGGGGATTAAATTCATCTAGAC 58.157 40.000 0.00 0.00 0.00 2.59
3136 5733 8.437575 GTTACCTGGGGATTAAATTCATCTAGA 58.562 37.037 0.00 0.00 0.00 2.43
3137 5734 8.440771 AGTTACCTGGGGATTAAATTCATCTAG 58.559 37.037 0.00 0.00 0.00 2.43
3138 5735 8.344939 AGTTACCTGGGGATTAAATTCATCTA 57.655 34.615 0.00 0.00 0.00 1.98
3139 5736 7.226059 AGTTACCTGGGGATTAAATTCATCT 57.774 36.000 0.00 0.00 0.00 2.90
3340 5937 7.119846 GTGCTAAGTTTGGTGATGATAAGTTCT 59.880 37.037 0.00 0.00 0.00 3.01
3438 6035 4.288366 TCCCATGATGTTAACAAGAGTGGA 59.712 41.667 23.31 18.39 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.