Multiple sequence alignment - TraesCS3A01G464000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G464000 chr3A 100.000 2958 0 0 1 2958 698295940 698298897 0.000000e+00 5463
1 TraesCS3A01G464000 chr3A 81.944 216 39 0 2254 2469 698276235 698276450 1.810000e-42 183
2 TraesCS3A01G464000 chr1A 96.848 2284 32 6 1 2254 532735322 532733049 0.000000e+00 3783
3 TraesCS3A01G464000 chr1A 92.550 1933 101 16 1 1923 584970312 584972211 0.000000e+00 2732
4 TraesCS3A01G464000 chr1A 96.041 1263 43 3 1 1262 12307859 12309115 0.000000e+00 2049
5 TraesCS3A01G464000 chr1A 92.127 978 31 5 1299 2250 12309363 12310320 0.000000e+00 1338
6 TraesCS3A01G464000 chr1A 98.925 465 4 1 2470 2933 82077335 82076871 0.000000e+00 830
7 TraesCS3A01G464000 chr1A 98.283 466 7 1 2470 2934 583298501 583298966 0.000000e+00 815
8 TraesCS3A01G464000 chr1A 93.617 329 18 3 1923 2250 584972292 584972618 3.430000e-134 488
9 TraesCS3A01G464000 chr5A 94.965 2284 67 14 1 2250 673237892 673240161 0.000000e+00 3537
10 TraesCS3A01G464000 chr2A 94.908 2278 76 14 1 2250 9951375 9953640 0.000000e+00 3528
11 TraesCS3A01G464000 chr2A 94.960 2262 72 11 1 2231 776173545 776175795 0.000000e+00 3507
12 TraesCS3A01G464000 chr2A 87.793 213 26 0 2257 2469 549640579 549640367 1.760000e-62 250
13 TraesCS3A01G464000 chr7B 93.046 1927 96 13 1 1923 706976364 706974472 0.000000e+00 2782
14 TraesCS3A01G464000 chr7B 98.498 466 6 1 2470 2934 624247466 624247001 0.000000e+00 821
15 TraesCS3A01G464000 chr3B 92.188 1933 100 17 1 1923 772227377 772229268 0.000000e+00 2686
16 TraesCS3A01G464000 chr3B 99.355 465 2 1 2470 2933 754371025 754371489 0.000000e+00 841
17 TraesCS3A01G464000 chr3B 98.498 466 6 1 2469 2933 472877796 472878261 0.000000e+00 821
18 TraesCS3A01G464000 chr3B 92.121 330 23 3 1923 2250 772229349 772229677 2.080000e-126 462
19 TraesCS3A01G464000 chr3B 95.261 211 10 0 2259 2469 751061555 751061765 4.720000e-88 335
20 TraesCS3A01G464000 chr3B 84.804 204 31 0 2266 2469 751047032 751047235 3.860000e-49 206
21 TraesCS3A01G464000 chr5B 91.710 1942 108 23 1 1923 26737093 26735186 0.000000e+00 2645
22 TraesCS3A01G464000 chr5B 93.393 333 19 3 1923 2254 26735105 26734775 9.530000e-135 490
23 TraesCS3A01G464000 chrUn 93.239 917 48 6 1010 1923 117079696 117080601 0.000000e+00 1338
24 TraesCS3A01G464000 chrUn 91.622 931 60 8 1 925 117078750 117079668 0.000000e+00 1271
25 TraesCS3A01G464000 chrUn 98.501 467 6 1 2470 2935 235766266 235766732 0.000000e+00 822
26 TraesCS3A01G464000 chrUn 90.988 344 27 3 1927 2267 327556918 327557260 7.470000e-126 460
27 TraesCS3A01G464000 chr4A 98.715 467 5 1 2470 2935 617684635 617685101 0.000000e+00 828
28 TraesCS3A01G464000 chr7A 98.501 467 6 1 2469 2934 47789464 47788998 0.000000e+00 822
29 TraesCS3A01G464000 chr6B 98.498 466 6 1 2470 2934 18757206 18757671 0.000000e+00 821
30 TraesCS3A01G464000 chr1B 92.814 334 22 2 1923 2254 182060466 182060799 1.590000e-132 483
31 TraesCS3A01G464000 chr3D 95.370 216 10 0 2254 2469 563636937 563637152 7.850000e-91 344
32 TraesCS3A01G464000 chr3D 85.253 217 31 1 2254 2469 563620026 563620242 3.840000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G464000 chr3A 698295940 698298897 2957 False 5463.0 5463 100.0000 1 2958 1 chr3A.!!$F2 2957
1 TraesCS3A01G464000 chr1A 532733049 532735322 2273 True 3783.0 3783 96.8480 1 2254 1 chr1A.!!$R2 2253
2 TraesCS3A01G464000 chr1A 12307859 12310320 2461 False 1693.5 2049 94.0840 1 2250 2 chr1A.!!$F2 2249
3 TraesCS3A01G464000 chr1A 584970312 584972618 2306 False 1610.0 2732 93.0835 1 2250 2 chr1A.!!$F3 2249
4 TraesCS3A01G464000 chr5A 673237892 673240161 2269 False 3537.0 3537 94.9650 1 2250 1 chr5A.!!$F1 2249
5 TraesCS3A01G464000 chr2A 9951375 9953640 2265 False 3528.0 3528 94.9080 1 2250 1 chr2A.!!$F1 2249
6 TraesCS3A01G464000 chr2A 776173545 776175795 2250 False 3507.0 3507 94.9600 1 2231 1 chr2A.!!$F2 2230
7 TraesCS3A01G464000 chr7B 706974472 706976364 1892 True 2782.0 2782 93.0460 1 1923 1 chr7B.!!$R2 1922
8 TraesCS3A01G464000 chr3B 772227377 772229677 2300 False 1574.0 2686 92.1545 1 2250 2 chr3B.!!$F5 2249
9 TraesCS3A01G464000 chr5B 26734775 26737093 2318 True 1567.5 2645 92.5515 1 2254 2 chr5B.!!$R1 2253
10 TraesCS3A01G464000 chrUn 117078750 117080601 1851 False 1304.5 1338 92.4305 1 1923 2 chrUn.!!$F3 1922

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 849 0.247736 AGACTAAGCTGCTTGTCCCG 59.752 55.0 26.49 14.28 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2275 2690 0.036952 CACCAATGACCTCGACTGCT 60.037 55.0 0.0 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 174 2.450609 AATTCGCGTTAGGTCACAGT 57.549 45.000 5.77 0.00 0.00 3.55
185 195 2.807045 GAGAGAGCACACACGCGG 60.807 66.667 12.47 1.27 36.85 6.46
546 569 3.379372 CGAGTTTGATGGATGGATGCTTT 59.621 43.478 0.00 0.00 0.00 3.51
702 725 6.897706 TGATGATTGACCATTTGTTCTTCA 57.102 33.333 0.00 0.00 0.00 3.02
754 781 3.628832 ATGGACAAGGAAAAGGGGAAA 57.371 42.857 0.00 0.00 0.00 3.13
787 817 1.360852 AGGAGAAGGAGAGGAGCTTGA 59.639 52.381 0.00 0.00 0.00 3.02
809 839 7.129457 TGATGTCCATTATGAAGACTAAGCT 57.871 36.000 0.00 0.00 0.00 3.74
819 849 0.247736 AGACTAAGCTGCTTGTCCCG 59.752 55.000 26.49 14.28 0.00 5.14
896 934 2.643551 CAAGGATTACGGCAATGTCCT 58.356 47.619 0.00 0.00 40.91 3.85
1043 1081 4.308458 CCAAGGCGACCACGTCCA 62.308 66.667 0.00 0.00 45.89 4.02
1419 1676 4.084171 TGTCGAACACGTTCTGTAGTAGAG 60.084 45.833 8.21 0.00 36.61 2.43
1945 2347 9.123902 CCAATTCTTTTCATCACTATGACCATA 57.876 33.333 0.00 0.00 41.87 2.74
2123 2528 1.823295 GGTCTGAGCCGAGCCATAA 59.177 57.895 0.00 0.00 0.00 1.90
2135 2540 2.159627 CGAGCCATAACAAAAACGAGCT 59.840 45.455 0.00 0.00 0.00 4.09
2184 2599 4.856607 GAGCCGAGCCGAACCGAG 62.857 72.222 0.00 0.00 0.00 4.63
2254 2669 1.592223 GCTCGTGTCCAGCCTTACT 59.408 57.895 0.00 0.00 0.00 2.24
2255 2670 0.458716 GCTCGTGTCCAGCCTTACTC 60.459 60.000 0.00 0.00 0.00 2.59
2256 2671 0.888619 CTCGTGTCCAGCCTTACTCA 59.111 55.000 0.00 0.00 0.00 3.41
2257 2672 1.478510 CTCGTGTCCAGCCTTACTCAT 59.521 52.381 0.00 0.00 0.00 2.90
2258 2673 1.204704 TCGTGTCCAGCCTTACTCATG 59.795 52.381 0.00 0.00 0.00 3.07
2259 2674 1.740380 CGTGTCCAGCCTTACTCATGG 60.740 57.143 0.00 0.00 0.00 3.66
2266 2681 3.853104 CCTTACTCATGGCACGGAA 57.147 52.632 0.00 0.00 0.00 4.30
2267 2682 1.656652 CCTTACTCATGGCACGGAAG 58.343 55.000 0.00 0.00 0.00 3.46
2286 2701 3.289525 GCCTGTAGCAGTCGAGGT 58.710 61.111 0.00 0.00 42.97 3.85
2287 2702 1.139947 GCCTGTAGCAGTCGAGGTC 59.860 63.158 0.00 0.00 42.97 3.85
2288 2703 1.595993 GCCTGTAGCAGTCGAGGTCA 61.596 60.000 0.00 0.00 42.97 4.02
2289 2704 1.107114 CCTGTAGCAGTCGAGGTCAT 58.893 55.000 0.00 0.00 0.00 3.06
2290 2705 1.478510 CCTGTAGCAGTCGAGGTCATT 59.521 52.381 0.00 0.00 0.00 2.57
2291 2706 2.534298 CTGTAGCAGTCGAGGTCATTG 58.466 52.381 0.00 0.00 0.00 2.82
2292 2707 1.204704 TGTAGCAGTCGAGGTCATTGG 59.795 52.381 0.00 0.00 0.00 3.16
2293 2708 1.204941 GTAGCAGTCGAGGTCATTGGT 59.795 52.381 0.00 0.00 0.00 3.67
2294 2709 0.036952 AGCAGTCGAGGTCATTGGTG 60.037 55.000 0.00 0.00 0.00 4.17
2295 2710 1.021390 GCAGTCGAGGTCATTGGTGG 61.021 60.000 0.00 0.00 0.00 4.61
2296 2711 0.321671 CAGTCGAGGTCATTGGTGGT 59.678 55.000 0.00 0.00 0.00 4.16
2297 2712 0.608640 AGTCGAGGTCATTGGTGGTC 59.391 55.000 0.00 0.00 0.00 4.02
2298 2713 0.320374 GTCGAGGTCATTGGTGGTCA 59.680 55.000 0.00 0.00 0.00 4.02
2299 2714 0.608130 TCGAGGTCATTGGTGGTCAG 59.392 55.000 0.00 0.00 0.00 3.51
2300 2715 0.321671 CGAGGTCATTGGTGGTCAGT 59.678 55.000 0.00 0.00 0.00 3.41
2301 2716 1.548719 CGAGGTCATTGGTGGTCAGTA 59.451 52.381 0.00 0.00 0.00 2.74
2302 2717 2.417379 CGAGGTCATTGGTGGTCAGTAG 60.417 54.545 0.00 0.00 0.00 2.57
2303 2718 1.909302 AGGTCATTGGTGGTCAGTAGG 59.091 52.381 0.00 0.00 0.00 3.18
2304 2719 1.065418 GGTCATTGGTGGTCAGTAGGG 60.065 57.143 0.00 0.00 0.00 3.53
2305 2720 1.906574 GTCATTGGTGGTCAGTAGGGA 59.093 52.381 0.00 0.00 0.00 4.20
2306 2721 2.093447 GTCATTGGTGGTCAGTAGGGAG 60.093 54.545 0.00 0.00 0.00 4.30
2307 2722 1.909302 CATTGGTGGTCAGTAGGGAGT 59.091 52.381 0.00 0.00 0.00 3.85
2308 2723 1.640917 TTGGTGGTCAGTAGGGAGTC 58.359 55.000 0.00 0.00 0.00 3.36
2309 2724 0.611062 TGGTGGTCAGTAGGGAGTCG 60.611 60.000 0.00 0.00 0.00 4.18
2310 2725 1.321074 GGTGGTCAGTAGGGAGTCGG 61.321 65.000 0.00 0.00 0.00 4.79
2311 2726 1.681327 TGGTCAGTAGGGAGTCGGC 60.681 63.158 0.00 0.00 0.00 5.54
2312 2727 2.772691 GGTCAGTAGGGAGTCGGCG 61.773 68.421 0.00 0.00 0.00 6.46
2313 2728 1.748122 GTCAGTAGGGAGTCGGCGA 60.748 63.158 4.99 4.99 0.00 5.54
2314 2729 1.748122 TCAGTAGGGAGTCGGCGAC 60.748 63.158 31.33 31.33 0.00 5.19
2329 2744 3.774702 GACGCGGCGAACAAGGTC 61.775 66.667 30.94 10.39 0.00 3.85
2330 2745 4.595538 ACGCGGCGAACAAGGTCA 62.596 61.111 30.94 0.00 0.00 4.02
2331 2746 3.777925 CGCGGCGAACAAGGTCAG 61.778 66.667 19.16 0.00 0.00 3.51
2332 2747 3.423154 GCGGCGAACAAGGTCAGG 61.423 66.667 12.98 0.00 0.00 3.86
2333 2748 3.423154 CGGCGAACAAGGTCAGGC 61.423 66.667 0.00 0.00 0.00 4.85
2334 2749 3.423154 GGCGAACAAGGTCAGGCG 61.423 66.667 0.00 0.00 0.00 5.52
2335 2750 3.423154 GCGAACAAGGTCAGGCGG 61.423 66.667 0.00 0.00 0.00 6.13
2336 2751 2.342279 CGAACAAGGTCAGGCGGA 59.658 61.111 0.00 0.00 0.00 5.54
2337 2752 1.301401 CGAACAAGGTCAGGCGGAA 60.301 57.895 0.00 0.00 0.00 4.30
2338 2753 1.291877 CGAACAAGGTCAGGCGGAAG 61.292 60.000 0.00 0.00 0.00 3.46
2350 2765 3.981308 CGGAAGCGTGGACCATTT 58.019 55.556 0.00 0.00 0.00 2.32
2351 2766 1.501741 CGGAAGCGTGGACCATTTG 59.498 57.895 0.00 0.00 0.00 2.32
2352 2767 1.883021 GGAAGCGTGGACCATTTGG 59.117 57.895 0.00 0.00 42.17 3.28
2353 2768 0.608035 GGAAGCGTGGACCATTTGGA 60.608 55.000 3.01 0.00 38.94 3.53
2354 2769 0.521735 GAAGCGTGGACCATTTGGAC 59.478 55.000 3.01 0.00 38.94 4.02
2361 2776 2.586648 GGACCATTTGGACCAGTCTT 57.413 50.000 12.40 0.00 46.96 3.01
2362 2777 2.437413 GGACCATTTGGACCAGTCTTC 58.563 52.381 12.40 0.00 46.96 2.87
2363 2778 2.437413 GACCATTTGGACCAGTCTTCC 58.563 52.381 3.01 0.00 38.94 3.46
2364 2779 1.271379 ACCATTTGGACCAGTCTTCCG 60.271 52.381 3.01 0.00 38.94 4.30
2365 2780 0.804989 CATTTGGACCAGTCTTCCGC 59.195 55.000 0.00 0.00 35.70 5.54
2366 2781 0.693049 ATTTGGACCAGTCTTCCGCT 59.307 50.000 0.00 0.00 35.70 5.52
2367 2782 1.344065 TTTGGACCAGTCTTCCGCTA 58.656 50.000 0.00 0.00 35.70 4.26
2368 2783 1.568504 TTGGACCAGTCTTCCGCTAT 58.431 50.000 0.00 0.00 35.70 2.97
2369 2784 1.112113 TGGACCAGTCTTCCGCTATC 58.888 55.000 0.00 0.00 35.70 2.08
2370 2785 1.112113 GGACCAGTCTTCCGCTATCA 58.888 55.000 0.00 0.00 0.00 2.15
2371 2786 1.689273 GGACCAGTCTTCCGCTATCAT 59.311 52.381 0.00 0.00 0.00 2.45
2372 2787 2.546795 GGACCAGTCTTCCGCTATCATG 60.547 54.545 0.00 0.00 0.00 3.07
2373 2788 1.414181 ACCAGTCTTCCGCTATCATGG 59.586 52.381 0.00 0.00 0.00 3.66
2374 2789 1.688735 CCAGTCTTCCGCTATCATGGA 59.311 52.381 0.00 0.00 0.00 3.41
2375 2790 2.546795 CCAGTCTTCCGCTATCATGGAC 60.547 54.545 0.00 0.00 32.95 4.02
2376 2791 1.338337 AGTCTTCCGCTATCATGGACG 59.662 52.381 0.00 0.00 32.95 4.79
2377 2792 0.673985 TCTTCCGCTATCATGGACGG 59.326 55.000 9.43 9.43 46.97 4.79
2381 2796 2.900528 CGCTATCATGGACGGAACC 58.099 57.895 0.00 0.00 0.00 3.62
2382 2797 0.104120 CGCTATCATGGACGGAACCA 59.896 55.000 0.00 0.00 44.41 3.67
2383 2798 1.583054 GCTATCATGGACGGAACCAC 58.417 55.000 0.00 0.00 43.03 4.16
2384 2799 1.810412 GCTATCATGGACGGAACCACC 60.810 57.143 0.00 0.00 43.03 4.61
2402 2817 4.986708 GGCGTGGCTTGGGGGAAA 62.987 66.667 0.00 0.00 0.00 3.13
2403 2818 3.680786 GCGTGGCTTGGGGGAAAC 61.681 66.667 0.00 0.00 0.00 2.78
2404 2819 2.115266 CGTGGCTTGGGGGAAACT 59.885 61.111 0.00 0.00 0.00 2.66
2405 2820 1.971695 CGTGGCTTGGGGGAAACTC 60.972 63.158 0.00 0.00 0.00 3.01
2406 2821 1.971695 GTGGCTTGGGGGAAACTCG 60.972 63.158 0.00 0.00 0.00 4.18
2407 2822 2.361230 GGCTTGGGGGAAACTCGG 60.361 66.667 0.00 0.00 0.00 4.63
2408 2823 2.361230 GCTTGGGGGAAACTCGGG 60.361 66.667 0.00 0.00 0.00 5.14
2409 2824 3.167414 CTTGGGGGAAACTCGGGT 58.833 61.111 0.00 0.00 0.00 5.28
2410 2825 1.002502 CTTGGGGGAAACTCGGGTC 60.003 63.158 0.00 0.00 0.00 4.46
2411 2826 1.462627 TTGGGGGAAACTCGGGTCT 60.463 57.895 0.00 0.00 0.00 3.85
2412 2827 1.063654 TTGGGGGAAACTCGGGTCTT 61.064 55.000 0.00 0.00 0.00 3.01
2413 2828 1.298993 GGGGGAAACTCGGGTCTTC 59.701 63.158 0.00 0.00 0.00 2.87
2414 2829 1.486145 GGGGGAAACTCGGGTCTTCA 61.486 60.000 10.95 0.00 0.00 3.02
2415 2830 0.618981 GGGGAAACTCGGGTCTTCAT 59.381 55.000 10.95 0.00 0.00 2.57
2416 2831 1.004394 GGGGAAACTCGGGTCTTCATT 59.996 52.381 10.95 0.00 0.00 2.57
2417 2832 2.357075 GGGAAACTCGGGTCTTCATTC 58.643 52.381 10.95 1.35 0.00 2.67
2418 2833 2.290071 GGGAAACTCGGGTCTTCATTCA 60.290 50.000 10.95 0.00 0.00 2.57
2419 2834 2.742589 GGAAACTCGGGTCTTCATTCAC 59.257 50.000 10.95 0.00 0.00 3.18
2420 2835 3.557264 GGAAACTCGGGTCTTCATTCACT 60.557 47.826 10.95 0.00 0.00 3.41
2421 2836 3.771577 AACTCGGGTCTTCATTCACTT 57.228 42.857 0.00 0.00 0.00 3.16
2422 2837 3.771577 ACTCGGGTCTTCATTCACTTT 57.228 42.857 0.00 0.00 0.00 2.66
2423 2838 4.086706 ACTCGGGTCTTCATTCACTTTT 57.913 40.909 0.00 0.00 0.00 2.27
2424 2839 4.461198 ACTCGGGTCTTCATTCACTTTTT 58.539 39.130 0.00 0.00 0.00 1.94
2438 2853 2.203365 TTTTTGGCCGGCGGAAGA 60.203 55.556 33.44 11.14 0.00 2.87
2439 2854 1.828660 TTTTTGGCCGGCGGAAGAA 60.829 52.632 33.44 16.96 0.00 2.52
2440 2855 1.801309 TTTTTGGCCGGCGGAAGAAG 61.801 55.000 33.44 1.21 0.00 2.85
2441 2856 2.684192 TTTTGGCCGGCGGAAGAAGA 62.684 55.000 33.44 10.59 0.00 2.87
2442 2857 3.605749 TTGGCCGGCGGAAGAAGAG 62.606 63.158 33.44 0.00 0.00 2.85
2444 2859 4.760047 GCCGGCGGAAGAAGAGCA 62.760 66.667 33.44 0.00 0.00 4.26
2445 2860 2.510238 CCGGCGGAAGAAGAGCAG 60.510 66.667 24.41 0.00 0.00 4.24
2446 2861 2.510238 CGGCGGAAGAAGAGCAGG 60.510 66.667 0.00 0.00 0.00 4.85
2447 2862 2.124942 GGCGGAAGAAGAGCAGGG 60.125 66.667 0.00 0.00 0.00 4.45
2448 2863 2.124942 GCGGAAGAAGAGCAGGGG 60.125 66.667 0.00 0.00 0.00 4.79
2449 2864 2.960688 GCGGAAGAAGAGCAGGGGT 61.961 63.158 0.00 0.00 0.00 4.95
2450 2865 1.078848 CGGAAGAAGAGCAGGGGTG 60.079 63.158 0.00 0.00 0.00 4.61
2451 2866 1.301293 GGAAGAAGAGCAGGGGTGG 59.699 63.158 0.00 0.00 0.00 4.61
2452 2867 1.377856 GAAGAAGAGCAGGGGTGGC 60.378 63.158 0.00 0.00 0.00 5.01
2453 2868 2.828480 GAAGAAGAGCAGGGGTGGCC 62.828 65.000 0.00 0.00 0.00 5.36
2454 2869 3.650950 GAAGAGCAGGGGTGGCCA 61.651 66.667 0.00 0.00 0.00 5.36
2455 2870 3.185203 AAGAGCAGGGGTGGCCAA 61.185 61.111 7.24 0.00 0.00 4.52
2456 2871 2.505364 GAAGAGCAGGGGTGGCCAAT 62.505 60.000 7.24 0.00 0.00 3.16
2457 2872 2.757099 GAGCAGGGGTGGCCAATG 60.757 66.667 7.24 5.48 0.00 2.82
2458 2873 4.387343 AGCAGGGGTGGCCAATGG 62.387 66.667 7.24 0.00 0.00 3.16
2468 2883 4.827481 GCCAATGGCTGCAGAATG 57.173 55.556 20.43 9.57 46.69 2.67
2488 2903 9.449550 CAGAATGCGAAAATATAAAATAGCACA 57.550 29.630 0.00 0.00 36.15 4.57
2489 2904 9.669353 AGAATGCGAAAATATAAAATAGCACAG 57.331 29.630 0.00 0.00 36.15 3.66
2490 2905 7.858052 ATGCGAAAATATAAAATAGCACAGC 57.142 32.000 0.00 0.00 36.15 4.40
2491 2906 7.026631 TGCGAAAATATAAAATAGCACAGCT 57.973 32.000 0.00 0.00 43.41 4.24
2492 2907 6.912051 TGCGAAAATATAAAATAGCACAGCTG 59.088 34.615 13.48 13.48 40.10 4.24
2493 2908 6.129352 GCGAAAATATAAAATAGCACAGCTGC 60.129 38.462 15.27 0.57 44.63 5.25
2494 2909 6.912051 CGAAAATATAAAATAGCACAGCTGCA 59.088 34.615 15.27 0.00 46.97 4.41
2495 2910 7.096885 CGAAAATATAAAATAGCACAGCTGCAC 60.097 37.037 15.27 5.98 46.97 4.57
2496 2911 5.695851 ATATAAAATAGCACAGCTGCACC 57.304 39.130 15.27 1.79 46.97 5.01
2497 2912 0.523072 AAAATAGCACAGCTGCACCG 59.477 50.000 15.27 0.69 46.97 4.94
2498 2913 1.308069 AAATAGCACAGCTGCACCGG 61.308 55.000 15.27 0.00 46.97 5.28
2499 2914 3.687321 ATAGCACAGCTGCACCGGG 62.687 63.158 15.27 0.00 46.97 5.73
2510 2925 2.122813 CACCGGGGCCCTCTCTAT 60.123 66.667 24.38 0.00 0.00 1.98
2511 2926 2.201771 ACCGGGGCCCTCTCTATC 59.798 66.667 24.38 0.93 0.00 2.08
2512 2927 2.404750 ACCGGGGCCCTCTCTATCT 61.405 63.158 24.38 0.00 0.00 1.98
2513 2928 1.072505 ACCGGGGCCCTCTCTATCTA 61.073 60.000 24.38 0.00 0.00 1.98
2514 2929 0.323908 CCGGGGCCCTCTCTATCTAG 60.324 65.000 24.38 0.00 0.00 2.43
2515 2930 0.968393 CGGGGCCCTCTCTATCTAGC 60.968 65.000 24.38 0.00 0.00 3.42
2516 2931 0.616395 GGGGCCCTCTCTATCTAGCC 60.616 65.000 24.38 0.00 39.73 3.93
2517 2932 0.115349 GGGCCCTCTCTATCTAGCCA 59.885 60.000 17.04 0.00 42.29 4.75
2518 2933 1.273552 GGGCCCTCTCTATCTAGCCAT 60.274 57.143 17.04 0.00 42.29 4.40
2519 2934 2.107366 GGCCCTCTCTATCTAGCCATC 58.893 57.143 0.00 0.00 40.20 3.51
2520 2935 2.107366 GCCCTCTCTATCTAGCCATCC 58.893 57.143 0.00 0.00 0.00 3.51
2521 2936 2.558575 GCCCTCTCTATCTAGCCATCCA 60.559 54.545 0.00 0.00 0.00 3.41
2522 2937 3.885333 GCCCTCTCTATCTAGCCATCCAT 60.885 52.174 0.00 0.00 0.00 3.41
2523 2938 4.360889 CCCTCTCTATCTAGCCATCCATT 58.639 47.826 0.00 0.00 0.00 3.16
2524 2939 4.405358 CCCTCTCTATCTAGCCATCCATTC 59.595 50.000 0.00 0.00 0.00 2.67
2525 2940 5.271598 CCTCTCTATCTAGCCATCCATTCT 58.728 45.833 0.00 0.00 0.00 2.40
2526 2941 5.127519 CCTCTCTATCTAGCCATCCATTCTG 59.872 48.000 0.00 0.00 0.00 3.02
2527 2942 4.465660 TCTCTATCTAGCCATCCATTCTGC 59.534 45.833 0.00 0.00 0.00 4.26
2528 2943 2.469274 ATCTAGCCATCCATTCTGCG 57.531 50.000 0.00 0.00 0.00 5.18
2529 2944 0.250038 TCTAGCCATCCATTCTGCGC 60.250 55.000 0.00 0.00 0.00 6.09
2530 2945 0.533531 CTAGCCATCCATTCTGCGCA 60.534 55.000 10.98 10.98 0.00 6.09
2531 2946 0.109153 TAGCCATCCATTCTGCGCAT 59.891 50.000 12.24 0.00 0.00 4.73
2532 2947 1.170919 AGCCATCCATTCTGCGCATC 61.171 55.000 12.24 0.00 0.00 3.91
2533 2948 1.572941 CCATCCATTCTGCGCATCG 59.427 57.895 12.24 0.00 0.00 3.84
2545 2960 2.399217 GCATCGCGATTCGTGCAA 59.601 55.556 23.50 0.00 41.45 4.08
2546 2961 1.225991 GCATCGCGATTCGTGCAAA 60.226 52.632 23.50 0.00 41.45 3.68
2547 2962 1.455908 GCATCGCGATTCGTGCAAAC 61.456 55.000 23.50 1.07 41.45 2.93
2548 2963 0.179227 CATCGCGATTCGTGCAAACA 60.179 50.000 21.14 0.00 37.28 2.83
2549 2964 0.179225 ATCGCGATTCGTGCAAACAC 60.179 50.000 17.62 0.00 43.76 3.32
2606 3021 6.479095 TTTTTGAAGTTCAAACCTTTGCAG 57.521 33.333 26.72 0.00 45.03 4.41
2607 3022 3.163630 TGAAGTTCAAACCTTTGCAGC 57.836 42.857 2.20 0.00 38.05 5.25
2608 3023 2.119457 GAAGTTCAAACCTTTGCAGCG 58.881 47.619 0.00 0.00 38.05 5.18
2609 3024 1.102978 AGTTCAAACCTTTGCAGCGT 58.897 45.000 0.00 0.00 38.05 5.07
2610 3025 2.294074 AGTTCAAACCTTTGCAGCGTA 58.706 42.857 0.00 0.00 38.05 4.42
2611 3026 2.290641 AGTTCAAACCTTTGCAGCGTAG 59.709 45.455 0.00 0.00 38.05 3.51
2612 3027 0.591170 TCAAACCTTTGCAGCGTAGC 59.409 50.000 0.00 0.00 46.28 3.58
2633 3048 9.522804 CGTAGCAAAGTTTTCTATCTAGAATCT 57.477 33.333 0.00 0.00 41.52 2.40
2759 3174 9.809395 TCCGAAAGATTTATCCTAGATTCTAGA 57.191 33.333 20.14 8.37 0.00 2.43
2768 3183 8.964533 TTATCCTAGATTCTAGATGGAAAGCT 57.035 34.615 20.14 0.80 0.00 3.74
2769 3184 7.870426 ATCCTAGATTCTAGATGGAAAGCTT 57.130 36.000 20.14 0.00 0.00 3.74
2770 3185 7.682787 TCCTAGATTCTAGATGGAAAGCTTT 57.317 36.000 20.14 12.53 0.00 3.51
2771 3186 7.504403 TCCTAGATTCTAGATGGAAAGCTTTG 58.496 38.462 18.30 0.00 0.00 2.77
2772 3187 6.204495 CCTAGATTCTAGATGGAAAGCTTTGC 59.796 42.308 22.47 22.47 0.00 3.68
2773 3188 4.886489 AGATTCTAGATGGAAAGCTTTGCC 59.114 41.667 25.53 20.40 0.00 4.52
2774 3189 3.719268 TCTAGATGGAAAGCTTTGCCA 57.281 42.857 25.53 24.47 35.91 4.92
2775 3190 3.347216 TCTAGATGGAAAGCTTTGCCAC 58.653 45.455 25.53 18.80 33.93 5.01
2776 3191 0.883833 AGATGGAAAGCTTTGCCACG 59.116 50.000 25.53 0.00 33.93 4.94
2777 3192 0.733909 GATGGAAAGCTTTGCCACGC 60.734 55.000 25.53 17.52 33.93 5.34
2778 3193 1.181098 ATGGAAAGCTTTGCCACGCT 61.181 50.000 25.53 11.04 38.30 5.07
2779 3194 1.372128 GGAAAGCTTTGCCACGCTG 60.372 57.895 18.30 0.00 36.45 5.18
2780 3195 2.018324 GAAAGCTTTGCCACGCTGC 61.018 57.895 18.30 0.00 36.45 5.25
2781 3196 2.682256 GAAAGCTTTGCCACGCTGCA 62.682 55.000 18.30 0.00 40.07 4.41
2787 3202 2.832661 TGCCACGCTGCAAAGGTT 60.833 55.556 0.00 0.00 38.56 3.50
2788 3203 2.417097 GCCACGCTGCAAAGGTTT 59.583 55.556 0.00 0.00 0.00 3.27
2789 3204 1.950630 GCCACGCTGCAAAGGTTTG 60.951 57.895 0.00 0.00 41.03 2.93
2790 3205 1.732917 CCACGCTGCAAAGGTTTGA 59.267 52.632 6.63 0.00 40.55 2.69
2791 3206 0.102120 CCACGCTGCAAAGGTTTGAA 59.898 50.000 6.63 0.00 40.55 2.69
2792 3207 1.199624 CACGCTGCAAAGGTTTGAAC 58.800 50.000 6.63 0.00 40.55 3.18
2793 3208 1.102978 ACGCTGCAAAGGTTTGAACT 58.897 45.000 6.63 0.00 40.55 3.01
2794 3209 1.476488 ACGCTGCAAAGGTTTGAACTT 59.524 42.857 6.63 0.00 40.55 2.66
2795 3210 2.119457 CGCTGCAAAGGTTTGAACTTC 58.881 47.619 6.63 0.00 40.55 3.01
2796 3211 2.479389 CGCTGCAAAGGTTTGAACTTCA 60.479 45.455 6.63 0.00 40.55 3.02
2797 3212 3.520569 GCTGCAAAGGTTTGAACTTCAA 58.479 40.909 6.63 0.00 40.55 2.69
2798 3213 3.553105 GCTGCAAAGGTTTGAACTTCAAG 59.447 43.478 6.63 0.00 40.55 3.02
2799 3214 4.677779 GCTGCAAAGGTTTGAACTTCAAGA 60.678 41.667 6.63 0.00 40.55 3.02
2800 3215 4.743493 TGCAAAGGTTTGAACTTCAAGAC 58.257 39.130 6.63 6.37 40.55 3.01
2801 3216 4.219507 TGCAAAGGTTTGAACTTCAAGACA 59.780 37.500 6.63 0.00 40.55 3.41
2802 3217 5.105392 TGCAAAGGTTTGAACTTCAAGACAT 60.105 36.000 6.63 2.37 40.55 3.06
2803 3218 5.460091 GCAAAGGTTTGAACTTCAAGACATC 59.540 40.000 6.63 0.00 40.55 3.06
2804 3219 6.681368 GCAAAGGTTTGAACTTCAAGACATCT 60.681 38.462 6.63 0.00 40.55 2.90
2805 3220 7.260603 CAAAGGTTTGAACTTCAAGACATCTT 58.739 34.615 4.43 0.37 40.55 2.40
2806 3221 7.410120 AAGGTTTGAACTTCAAGACATCTTT 57.590 32.000 4.43 0.00 37.70 2.52
2807 3222 7.410120 AGGTTTGAACTTCAAGACATCTTTT 57.590 32.000 4.43 0.00 37.70 2.27
2808 3223 8.519799 AGGTTTGAACTTCAAGACATCTTTTA 57.480 30.769 4.43 0.00 37.70 1.52
2809 3224 9.136323 AGGTTTGAACTTCAAGACATCTTTTAT 57.864 29.630 4.43 0.00 37.70 1.40
2810 3225 9.185192 GGTTTGAACTTCAAGACATCTTTTATG 57.815 33.333 4.43 0.00 37.70 1.90
2811 3226 9.736023 GTTTGAACTTCAAGACATCTTTTATGT 57.264 29.630 4.43 0.00 37.70 2.29
2812 3227 9.734620 TTTGAACTTCAAGACATCTTTTATGTG 57.265 29.630 4.43 0.00 37.70 3.21
2813 3228 8.675705 TGAACTTCAAGACATCTTTTATGTGA 57.324 30.769 0.00 0.00 33.11 3.58
2814 3229 8.777413 TGAACTTCAAGACATCTTTTATGTGAG 58.223 33.333 0.00 0.00 33.11 3.51
2815 3230 8.908786 AACTTCAAGACATCTTTTATGTGAGA 57.091 30.769 0.00 0.00 33.11 3.27
2816 3231 8.545229 ACTTCAAGACATCTTTTATGTGAGAG 57.455 34.615 0.00 0.00 33.11 3.20
2817 3232 8.370940 ACTTCAAGACATCTTTTATGTGAGAGA 58.629 33.333 0.00 0.00 33.11 3.10
2818 3233 9.212641 CTTCAAGACATCTTTTATGTGAGAGAA 57.787 33.333 0.00 0.00 33.11 2.87
2819 3234 9.559732 TTCAAGACATCTTTTATGTGAGAGAAA 57.440 29.630 0.00 0.00 33.11 2.52
2820 3235 8.993121 TCAAGACATCTTTTATGTGAGAGAAAC 58.007 33.333 0.00 0.00 33.11 2.78
2821 3236 8.777413 CAAGACATCTTTTATGTGAGAGAAACA 58.223 33.333 0.00 0.00 33.11 2.83
2822 3237 8.908786 AGACATCTTTTATGTGAGAGAAACAA 57.091 30.769 0.00 0.00 31.52 2.83
2823 3238 9.342308 AGACATCTTTTATGTGAGAGAAACAAA 57.658 29.630 0.00 0.00 31.52 2.83
2824 3239 9.950680 GACATCTTTTATGTGAGAGAAACAAAA 57.049 29.630 0.00 0.00 31.52 2.44
2859 3274 8.829514 TTTCATACGAAAAGTTAGTTGTGTTG 57.170 30.769 0.00 0.00 38.19 3.33
2860 3275 6.423862 TCATACGAAAAGTTAGTTGTGTTGC 58.576 36.000 0.00 0.00 0.00 4.17
2861 3276 4.688511 ACGAAAAGTTAGTTGTGTTGCA 57.311 36.364 0.00 0.00 0.00 4.08
2862 3277 4.408694 ACGAAAAGTTAGTTGTGTTGCAC 58.591 39.130 0.00 0.00 34.56 4.57
2863 3278 4.083217 ACGAAAAGTTAGTTGTGTTGCACA 60.083 37.500 0.00 0.00 43.02 4.57
2864 3279 4.495472 CGAAAAGTTAGTTGTGTTGCACAG 59.505 41.667 2.17 0.00 45.39 3.66
2865 3280 5.636837 GAAAAGTTAGTTGTGTTGCACAGA 58.363 37.500 2.17 0.00 45.39 3.41
2866 3281 5.835113 AAAGTTAGTTGTGTTGCACAGAT 57.165 34.783 2.17 0.00 45.39 2.90
2867 3282 5.424121 AAGTTAGTTGTGTTGCACAGATC 57.576 39.130 2.17 0.00 45.39 2.75
2868 3283 4.708177 AGTTAGTTGTGTTGCACAGATCT 58.292 39.130 2.17 0.00 45.39 2.75
2869 3284 5.126067 AGTTAGTTGTGTTGCACAGATCTT 58.874 37.500 0.00 0.00 45.39 2.40
2870 3285 6.288294 AGTTAGTTGTGTTGCACAGATCTTA 58.712 36.000 0.00 0.00 45.39 2.10
2871 3286 6.765989 AGTTAGTTGTGTTGCACAGATCTTAA 59.234 34.615 0.00 0.00 45.39 1.85
2872 3287 7.282224 AGTTAGTTGTGTTGCACAGATCTTAAA 59.718 33.333 0.00 0.00 45.39 1.52
2873 3288 6.064846 AGTTGTGTTGCACAGATCTTAAAG 57.935 37.500 0.00 0.00 45.39 1.85
2874 3289 4.488126 TGTGTTGCACAGATCTTAAAGC 57.512 40.909 0.00 0.00 39.62 3.51
2875 3290 3.882288 TGTGTTGCACAGATCTTAAAGCA 59.118 39.130 0.00 0.00 39.62 3.91
2876 3291 4.337836 TGTGTTGCACAGATCTTAAAGCAA 59.662 37.500 13.71 13.71 39.62 3.91
2877 3292 5.009911 TGTGTTGCACAGATCTTAAAGCAAT 59.990 36.000 18.21 0.00 42.90 3.56
2878 3293 6.206438 TGTGTTGCACAGATCTTAAAGCAATA 59.794 34.615 18.21 14.67 42.90 1.90
2879 3294 7.094248 TGTGTTGCACAGATCTTAAAGCAATAT 60.094 33.333 18.21 0.00 42.90 1.28
2880 3295 7.756722 GTGTTGCACAGATCTTAAAGCAATATT 59.243 33.333 18.21 0.00 42.90 1.28
2881 3296 7.756272 TGTTGCACAGATCTTAAAGCAATATTG 59.244 33.333 18.21 11.27 42.90 1.90
2882 3297 6.798482 TGCACAGATCTTAAAGCAATATTGG 58.202 36.000 17.02 0.00 0.00 3.16
2883 3298 6.602803 TGCACAGATCTTAAAGCAATATTGGA 59.397 34.615 17.02 5.09 0.00 3.53
2884 3299 6.914757 GCACAGATCTTAAAGCAATATTGGAC 59.085 38.462 17.02 1.44 0.00 4.02
2885 3300 7.415541 GCACAGATCTTAAAGCAATATTGGACA 60.416 37.037 17.02 0.00 0.00 4.02
2886 3301 8.461222 CACAGATCTTAAAGCAATATTGGACAA 58.539 33.333 17.02 0.00 0.00 3.18
2887 3302 8.462016 ACAGATCTTAAAGCAATATTGGACAAC 58.538 33.333 17.02 0.00 0.00 3.32
2888 3303 7.917505 CAGATCTTAAAGCAATATTGGACAACC 59.082 37.037 17.02 0.00 0.00 3.77
2889 3304 7.615365 AGATCTTAAAGCAATATTGGACAACCA 59.385 33.333 17.02 0.00 45.34 3.67
2899 3314 1.285280 TGGACAACCAGGATACCAGG 58.715 55.000 0.00 0.00 41.77 4.45
2900 3315 0.546598 GGACAACCAGGATACCAGGG 59.453 60.000 0.00 1.34 36.62 4.45
2901 3316 0.107165 GACAACCAGGATACCAGGGC 60.107 60.000 0.00 0.00 36.62 5.19
2902 3317 1.227383 CAACCAGGATACCAGGGCC 59.773 63.158 0.00 0.00 36.62 5.80
2903 3318 2.375345 AACCAGGATACCAGGGCCG 61.375 63.158 0.00 0.00 36.62 6.13
2904 3319 3.560251 CCAGGATACCAGGGCCGG 61.560 72.222 12.04 12.04 37.17 6.13
2905 3320 3.560251 CAGGATACCAGGGCCGGG 61.560 72.222 22.02 22.02 37.17 5.73
2906 3321 4.900259 AGGATACCAGGGCCGGGG 62.900 72.222 26.86 20.58 37.17 5.73
2908 3323 3.873812 GATACCAGGGCCGGGGTG 61.874 72.222 26.86 5.52 38.06 4.61
2918 3333 4.335647 CCGGGGTGCAGCTGTTCT 62.336 66.667 16.64 0.00 0.00 3.01
2919 3334 2.662596 CGGGGTGCAGCTGTTCTA 59.337 61.111 16.64 0.00 0.00 2.10
2920 3335 1.003839 CGGGGTGCAGCTGTTCTAA 60.004 57.895 16.64 0.00 0.00 2.10
2921 3336 0.605319 CGGGGTGCAGCTGTTCTAAA 60.605 55.000 16.64 0.00 0.00 1.85
2922 3337 1.616159 GGGGTGCAGCTGTTCTAAAA 58.384 50.000 16.64 0.00 0.00 1.52
2923 3338 1.960689 GGGGTGCAGCTGTTCTAAAAA 59.039 47.619 16.64 0.00 0.00 1.94
2924 3339 2.562738 GGGGTGCAGCTGTTCTAAAAAT 59.437 45.455 16.64 0.00 0.00 1.82
2925 3340 3.367395 GGGGTGCAGCTGTTCTAAAAATC 60.367 47.826 16.64 0.00 0.00 2.17
2926 3341 3.367395 GGGTGCAGCTGTTCTAAAAATCC 60.367 47.826 16.64 3.45 0.00 3.01
2927 3342 3.255642 GGTGCAGCTGTTCTAAAAATCCA 59.744 43.478 16.64 0.00 0.00 3.41
2928 3343 4.229876 GTGCAGCTGTTCTAAAAATCCAC 58.770 43.478 16.64 6.27 0.00 4.02
2929 3344 3.058293 TGCAGCTGTTCTAAAAATCCACG 60.058 43.478 16.64 0.00 0.00 4.94
2930 3345 3.058224 GCAGCTGTTCTAAAAATCCACGT 60.058 43.478 16.64 0.00 0.00 4.49
2931 3346 4.712763 CAGCTGTTCTAAAAATCCACGTC 58.287 43.478 5.25 0.00 0.00 4.34
2932 3347 3.751698 AGCTGTTCTAAAAATCCACGTCC 59.248 43.478 0.00 0.00 0.00 4.79
2933 3348 3.119955 GCTGTTCTAAAAATCCACGTCCC 60.120 47.826 0.00 0.00 0.00 4.46
2934 3349 4.324267 CTGTTCTAAAAATCCACGTCCCT 58.676 43.478 0.00 0.00 0.00 4.20
2935 3350 4.069304 TGTTCTAAAAATCCACGTCCCTG 58.931 43.478 0.00 0.00 0.00 4.45
2936 3351 2.706890 TCTAAAAATCCACGTCCCTGC 58.293 47.619 0.00 0.00 0.00 4.85
2937 3352 2.039216 TCTAAAAATCCACGTCCCTGCA 59.961 45.455 0.00 0.00 0.00 4.41
2938 3353 1.247567 AAAAATCCACGTCCCTGCAG 58.752 50.000 6.78 6.78 0.00 4.41
2939 3354 0.400213 AAAATCCACGTCCCTGCAGA 59.600 50.000 17.39 0.00 0.00 4.26
2940 3355 0.400213 AAATCCACGTCCCTGCAGAA 59.600 50.000 17.39 0.00 0.00 3.02
2941 3356 0.620556 AATCCACGTCCCTGCAGAAT 59.379 50.000 17.39 0.00 0.00 2.40
2942 3357 0.107508 ATCCACGTCCCTGCAGAATG 60.108 55.000 17.39 10.87 40.87 2.67
2943 3358 1.003355 CCACGTCCCTGCAGAATGT 60.003 57.895 17.39 11.55 39.31 2.71
2944 3359 1.021390 CCACGTCCCTGCAGAATGTC 61.021 60.000 17.39 0.24 39.31 3.06
2945 3360 0.320683 CACGTCCCTGCAGAATGTCA 60.321 55.000 17.39 0.00 39.31 3.58
2946 3361 0.320771 ACGTCCCTGCAGAATGTCAC 60.321 55.000 17.39 1.11 39.31 3.67
2947 3362 1.021390 CGTCCCTGCAGAATGTCACC 61.021 60.000 17.39 0.00 39.31 4.02
2948 3363 1.021390 GTCCCTGCAGAATGTCACCG 61.021 60.000 17.39 0.00 39.31 4.94
2949 3364 1.746615 CCCTGCAGAATGTCACCGG 60.747 63.158 17.39 0.00 39.31 5.28
2950 3365 1.746615 CCTGCAGAATGTCACCGGG 60.747 63.158 17.39 0.00 39.31 5.73
2951 3366 2.359850 TGCAGAATGTCACCGGGC 60.360 61.111 6.32 0.00 39.31 6.13
2952 3367 2.359850 GCAGAATGTCACCGGGCA 60.360 61.111 6.32 1.58 39.31 5.36
2953 3368 2.690778 GCAGAATGTCACCGGGCAC 61.691 63.158 6.32 1.49 39.31 5.01
2954 3369 2.047274 AGAATGTCACCGGGCACG 60.047 61.111 6.32 0.00 40.55 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 174 0.805614 GCGTGTGTGCTCTCTCTCTA 59.194 55.000 0.00 0.00 0.00 2.43
185 195 1.578206 GAAGGGTGAGGAAACTGCGC 61.578 60.000 0.00 0.00 44.43 6.09
257 269 1.675641 GTGCCAAGCCCGATGAGTT 60.676 57.895 0.00 0.00 0.00 3.01
546 569 2.023673 CACTCTCCAGCCAACAAACAA 58.976 47.619 0.00 0.00 0.00 2.83
702 725 0.471617 GGGGCTCTGCATACATCAGT 59.528 55.000 0.00 0.00 33.48 3.41
754 781 2.244769 CCTTCTCCTTCTCCTCCTCTCT 59.755 54.545 0.00 0.00 0.00 3.10
787 817 5.762218 GCAGCTTAGTCTTCATAATGGACAT 59.238 40.000 0.00 0.00 32.98 3.06
819 849 1.304617 CCTTCCCCTTCTGCTTCCC 59.695 63.158 0.00 0.00 0.00 3.97
896 934 2.658373 TAATAACAACTCGGCGAGCA 57.342 45.000 34.76 16.20 32.04 4.26
1004 1042 2.892640 CGGCGGTCTTGAGATCCA 59.107 61.111 0.00 0.00 0.00 3.41
1043 1081 1.668047 CCTCGTAGCGGAAGTTTTCGT 60.668 52.381 0.00 0.00 31.34 3.85
1105 1151 2.581216 TAGAGACAAGGACTCACGGT 57.419 50.000 0.00 0.00 36.91 4.83
1419 1676 3.718815 GGTGAAGATGTAGGATTCCGTC 58.281 50.000 0.00 0.00 0.00 4.79
1945 2347 9.113838 CAACATCTAGCAGTCTATGGTTTAAAT 57.886 33.333 0.00 0.00 40.89 1.40
2123 2528 1.941812 CGGCTCAGCTCGTTTTTGT 59.058 52.632 0.00 0.00 0.00 2.83
2135 2540 2.268920 CCTGCTTTAGGCGGCTCA 59.731 61.111 17.67 6.31 45.46 4.26
2176 2591 3.181967 CTCAAGCGGCTCGGTTCG 61.182 66.667 1.45 6.06 45.71 3.95
2177 2592 1.807573 CTCTCAAGCGGCTCGGTTC 60.808 63.158 1.45 0.00 45.71 3.62
2179 2594 4.443266 GCTCTCAAGCGGCTCGGT 62.443 66.667 1.45 0.00 39.10 4.69
2260 2675 3.876300 GCTACAGGCACTTCCGTG 58.124 61.111 0.00 0.00 44.07 4.94
2269 2684 1.139947 GACCTCGACTGCTACAGGC 59.860 63.158 0.00 0.00 35.89 4.85
2270 2685 1.107114 ATGACCTCGACTGCTACAGG 58.893 55.000 0.00 0.00 35.51 4.00
2271 2686 2.534298 CAATGACCTCGACTGCTACAG 58.466 52.381 0.00 0.00 37.52 2.74
2272 2687 1.204704 CCAATGACCTCGACTGCTACA 59.795 52.381 0.00 0.00 0.00 2.74
2273 2688 1.204941 ACCAATGACCTCGACTGCTAC 59.795 52.381 0.00 0.00 0.00 3.58
2274 2689 1.204704 CACCAATGACCTCGACTGCTA 59.795 52.381 0.00 0.00 0.00 3.49
2275 2690 0.036952 CACCAATGACCTCGACTGCT 60.037 55.000 0.00 0.00 0.00 4.24
2276 2691 1.021390 CCACCAATGACCTCGACTGC 61.021 60.000 0.00 0.00 0.00 4.40
2277 2692 0.321671 ACCACCAATGACCTCGACTG 59.678 55.000 0.00 0.00 0.00 3.51
2278 2693 0.608640 GACCACCAATGACCTCGACT 59.391 55.000 0.00 0.00 0.00 4.18
2279 2694 0.320374 TGACCACCAATGACCTCGAC 59.680 55.000 0.00 0.00 0.00 4.20
2280 2695 0.608130 CTGACCACCAATGACCTCGA 59.392 55.000 0.00 0.00 0.00 4.04
2281 2696 0.321671 ACTGACCACCAATGACCTCG 59.678 55.000 0.00 0.00 0.00 4.63
2282 2697 2.093447 CCTACTGACCACCAATGACCTC 60.093 54.545 0.00 0.00 0.00 3.85
2283 2698 1.909302 CCTACTGACCACCAATGACCT 59.091 52.381 0.00 0.00 0.00 3.85
2284 2699 1.065418 CCCTACTGACCACCAATGACC 60.065 57.143 0.00 0.00 0.00 4.02
2285 2700 1.906574 TCCCTACTGACCACCAATGAC 59.093 52.381 0.00 0.00 0.00 3.06
2286 2701 2.187958 CTCCCTACTGACCACCAATGA 58.812 52.381 0.00 0.00 0.00 2.57
2287 2702 1.909302 ACTCCCTACTGACCACCAATG 59.091 52.381 0.00 0.00 0.00 2.82
2288 2703 2.188817 GACTCCCTACTGACCACCAAT 58.811 52.381 0.00 0.00 0.00 3.16
2289 2704 1.640917 GACTCCCTACTGACCACCAA 58.359 55.000 0.00 0.00 0.00 3.67
2290 2705 0.611062 CGACTCCCTACTGACCACCA 60.611 60.000 0.00 0.00 0.00 4.17
2291 2706 1.321074 CCGACTCCCTACTGACCACC 61.321 65.000 0.00 0.00 0.00 4.61
2292 2707 1.946475 GCCGACTCCCTACTGACCAC 61.946 65.000 0.00 0.00 0.00 4.16
2293 2708 1.681327 GCCGACTCCCTACTGACCA 60.681 63.158 0.00 0.00 0.00 4.02
2294 2709 2.772691 CGCCGACTCCCTACTGACC 61.773 68.421 0.00 0.00 0.00 4.02
2295 2710 1.748122 TCGCCGACTCCCTACTGAC 60.748 63.158 0.00 0.00 0.00 3.51
2296 2711 1.748122 GTCGCCGACTCCCTACTGA 60.748 63.158 10.56 0.00 0.00 3.41
2297 2712 2.799371 GTCGCCGACTCCCTACTG 59.201 66.667 10.56 0.00 0.00 2.74
2298 2713 2.823147 CGTCGCCGACTCCCTACT 60.823 66.667 16.07 0.00 35.63 2.57
2299 2714 4.549516 GCGTCGCCGACTCCCTAC 62.550 72.222 16.07 0.00 35.63 3.18
2312 2727 3.774702 GACCTTGTTCGCCGCGTC 61.775 66.667 13.39 8.10 0.00 5.19
2313 2728 4.595538 TGACCTTGTTCGCCGCGT 62.596 61.111 13.39 0.00 0.00 6.01
2314 2729 3.777925 CTGACCTTGTTCGCCGCG 61.778 66.667 6.39 6.39 0.00 6.46
2315 2730 3.423154 CCTGACCTTGTTCGCCGC 61.423 66.667 0.00 0.00 0.00 6.53
2316 2731 3.423154 GCCTGACCTTGTTCGCCG 61.423 66.667 0.00 0.00 0.00 6.46
2317 2732 3.423154 CGCCTGACCTTGTTCGCC 61.423 66.667 0.00 0.00 0.00 5.54
2318 2733 3.423154 CCGCCTGACCTTGTTCGC 61.423 66.667 0.00 0.00 0.00 4.70
2319 2734 1.291877 CTTCCGCCTGACCTTGTTCG 61.292 60.000 0.00 0.00 0.00 3.95
2320 2735 1.578206 GCTTCCGCCTGACCTTGTTC 61.578 60.000 0.00 0.00 0.00 3.18
2321 2736 1.600916 GCTTCCGCCTGACCTTGTT 60.601 57.895 0.00 0.00 0.00 2.83
2322 2737 2.032681 GCTTCCGCCTGACCTTGT 59.967 61.111 0.00 0.00 0.00 3.16
2323 2738 3.121030 CGCTTCCGCCTGACCTTG 61.121 66.667 0.00 0.00 0.00 3.61
2324 2739 3.626924 ACGCTTCCGCCTGACCTT 61.627 61.111 0.00 0.00 38.22 3.50
2325 2740 4.379243 CACGCTTCCGCCTGACCT 62.379 66.667 0.00 0.00 38.22 3.85
2327 2742 4.373116 TCCACGCTTCCGCCTGAC 62.373 66.667 0.00 0.00 38.22 3.51
2328 2743 4.373116 GTCCACGCTTCCGCCTGA 62.373 66.667 0.00 0.00 38.22 3.86
2331 2746 4.778143 ATGGTCCACGCTTCCGCC 62.778 66.667 0.00 0.00 38.22 6.13
2332 2747 2.332654 AAATGGTCCACGCTTCCGC 61.333 57.895 0.00 0.00 38.22 5.54
2333 2748 1.501741 CAAATGGTCCACGCTTCCG 59.498 57.895 0.00 0.00 41.14 4.30
2334 2749 0.608035 TCCAAATGGTCCACGCTTCC 60.608 55.000 0.00 0.00 36.34 3.46
2335 2750 0.521735 GTCCAAATGGTCCACGCTTC 59.478 55.000 0.00 0.00 36.34 3.86
2336 2751 0.893727 GGTCCAAATGGTCCACGCTT 60.894 55.000 10.36 0.00 42.04 4.68
2337 2752 1.303317 GGTCCAAATGGTCCACGCT 60.303 57.895 10.36 0.00 42.04 5.07
2338 2753 1.586154 CTGGTCCAAATGGTCCACGC 61.586 60.000 13.44 0.00 46.05 5.34
2339 2754 0.250727 ACTGGTCCAAATGGTCCACG 60.251 55.000 13.44 11.96 46.05 4.94
2340 2755 1.073923 AGACTGGTCCAAATGGTCCAC 59.926 52.381 13.44 6.33 46.05 4.02
2342 2757 2.437413 GAAGACTGGTCCAAATGGTCC 58.563 52.381 8.57 8.57 42.66 4.46
2343 2758 2.437413 GGAAGACTGGTCCAAATGGTC 58.563 52.381 0.00 0.00 35.05 4.02
2344 2759 1.271379 CGGAAGACTGGTCCAAATGGT 60.271 52.381 0.00 0.00 34.56 3.55
2345 2760 1.453155 CGGAAGACTGGTCCAAATGG 58.547 55.000 0.00 0.00 34.56 3.16
2346 2761 0.804989 GCGGAAGACTGGTCCAAATG 59.195 55.000 0.00 0.00 34.56 2.32
2347 2762 0.693049 AGCGGAAGACTGGTCCAAAT 59.307 50.000 0.00 0.00 34.56 2.32
2348 2763 1.344065 TAGCGGAAGACTGGTCCAAA 58.656 50.000 0.00 0.00 34.56 3.28
2349 2764 1.480954 GATAGCGGAAGACTGGTCCAA 59.519 52.381 0.00 0.00 34.56 3.53
2350 2765 1.112113 GATAGCGGAAGACTGGTCCA 58.888 55.000 0.00 0.00 34.56 4.02
2351 2766 1.112113 TGATAGCGGAAGACTGGTCC 58.888 55.000 0.00 0.00 34.75 4.46
2352 2767 2.546795 CCATGATAGCGGAAGACTGGTC 60.547 54.545 0.00 0.00 34.75 4.02
2353 2768 1.414181 CCATGATAGCGGAAGACTGGT 59.586 52.381 0.00 0.00 36.97 4.00
2354 2769 1.688735 TCCATGATAGCGGAAGACTGG 59.311 52.381 0.00 0.00 0.00 4.00
2355 2770 2.748605 GTCCATGATAGCGGAAGACTG 58.251 52.381 0.00 0.00 31.67 3.51
2356 2771 1.338337 CGTCCATGATAGCGGAAGACT 59.662 52.381 0.00 0.00 33.13 3.24
2357 2772 1.603172 CCGTCCATGATAGCGGAAGAC 60.603 57.143 10.26 0.00 46.33 3.01
2358 2773 0.673985 CCGTCCATGATAGCGGAAGA 59.326 55.000 10.26 0.00 46.33 2.87
2359 2774 3.201342 CCGTCCATGATAGCGGAAG 57.799 57.895 10.26 0.00 46.33 3.46
2362 2777 0.600255 GGTTCCGTCCATGATAGCGG 60.600 60.000 0.00 2.51 44.95 5.52
2363 2778 0.104120 TGGTTCCGTCCATGATAGCG 59.896 55.000 0.00 0.00 31.96 4.26
2364 2779 1.583054 GTGGTTCCGTCCATGATAGC 58.417 55.000 0.00 0.00 39.81 2.97
2365 2780 2.240493 GGTGGTTCCGTCCATGATAG 57.760 55.000 0.00 0.00 39.81 2.08
2385 2800 4.986708 TTTCCCCCAAGCCACGCC 62.987 66.667 0.00 0.00 0.00 5.68
2386 2801 3.680786 GTTTCCCCCAAGCCACGC 61.681 66.667 0.00 0.00 0.00 5.34
2387 2802 1.971695 GAGTTTCCCCCAAGCCACG 60.972 63.158 0.00 0.00 0.00 4.94
2388 2803 1.971695 CGAGTTTCCCCCAAGCCAC 60.972 63.158 0.00 0.00 0.00 5.01
2389 2804 2.434331 CGAGTTTCCCCCAAGCCA 59.566 61.111 0.00 0.00 0.00 4.75
2390 2805 2.361230 CCGAGTTTCCCCCAAGCC 60.361 66.667 0.00 0.00 0.00 4.35
2391 2806 2.361230 CCCGAGTTTCCCCCAAGC 60.361 66.667 0.00 0.00 0.00 4.01
2392 2807 1.002502 GACCCGAGTTTCCCCCAAG 60.003 63.158 0.00 0.00 0.00 3.61
2393 2808 1.063654 AAGACCCGAGTTTCCCCCAA 61.064 55.000 0.00 0.00 0.00 4.12
2394 2809 1.462627 AAGACCCGAGTTTCCCCCA 60.463 57.895 0.00 0.00 0.00 4.96
2395 2810 1.298993 GAAGACCCGAGTTTCCCCC 59.701 63.158 0.00 0.00 0.00 5.40
2396 2811 0.618981 ATGAAGACCCGAGTTTCCCC 59.381 55.000 0.00 0.00 0.00 4.81
2397 2812 2.290071 TGAATGAAGACCCGAGTTTCCC 60.290 50.000 0.00 0.00 0.00 3.97
2398 2813 2.742589 GTGAATGAAGACCCGAGTTTCC 59.257 50.000 0.00 0.00 0.00 3.13
2399 2814 3.665190 AGTGAATGAAGACCCGAGTTTC 58.335 45.455 0.00 0.00 0.00 2.78
2400 2815 3.771577 AGTGAATGAAGACCCGAGTTT 57.228 42.857 0.00 0.00 0.00 2.66
2401 2816 3.771577 AAGTGAATGAAGACCCGAGTT 57.228 42.857 0.00 0.00 0.00 3.01
2402 2817 3.771577 AAAGTGAATGAAGACCCGAGT 57.228 42.857 0.00 0.00 0.00 4.18
2421 2836 1.801309 CTTCTTCCGCCGGCCAAAAA 61.801 55.000 23.46 6.09 0.00 1.94
2422 2837 2.203365 TTCTTCCGCCGGCCAAAA 60.203 55.556 23.46 11.74 0.00 2.44
2423 2838 2.671619 CTTCTTCCGCCGGCCAAA 60.672 61.111 23.46 14.49 0.00 3.28
2424 2839 3.605749 CTCTTCTTCCGCCGGCCAA 62.606 63.158 23.46 13.32 0.00 4.52
2425 2840 4.082523 CTCTTCTTCCGCCGGCCA 62.083 66.667 23.46 4.32 0.00 5.36
2427 2842 4.760047 TGCTCTTCTTCCGCCGGC 62.760 66.667 19.07 19.07 0.00 6.13
2428 2843 2.510238 CTGCTCTTCTTCCGCCGG 60.510 66.667 0.00 0.00 0.00 6.13
2429 2844 2.510238 CCTGCTCTTCTTCCGCCG 60.510 66.667 0.00 0.00 0.00 6.46
2430 2845 2.124942 CCCTGCTCTTCTTCCGCC 60.125 66.667 0.00 0.00 0.00 6.13
2431 2846 2.124942 CCCCTGCTCTTCTTCCGC 60.125 66.667 0.00 0.00 0.00 5.54
2432 2847 1.078848 CACCCCTGCTCTTCTTCCG 60.079 63.158 0.00 0.00 0.00 4.30
2433 2848 1.301293 CCACCCCTGCTCTTCTTCC 59.699 63.158 0.00 0.00 0.00 3.46
2434 2849 1.377856 GCCACCCCTGCTCTTCTTC 60.378 63.158 0.00 0.00 0.00 2.87
2435 2850 2.759795 GCCACCCCTGCTCTTCTT 59.240 61.111 0.00 0.00 0.00 2.52
2436 2851 3.334054 GGCCACCCCTGCTCTTCT 61.334 66.667 0.00 0.00 0.00 2.85
2437 2852 2.505364 ATTGGCCACCCCTGCTCTTC 62.505 60.000 3.88 0.00 0.00 2.87
2438 2853 2.551413 ATTGGCCACCCCTGCTCTT 61.551 57.895 3.88 0.00 0.00 2.85
2439 2854 2.943265 ATTGGCCACCCCTGCTCT 60.943 61.111 3.88 0.00 0.00 4.09
2440 2855 2.757099 CATTGGCCACCCCTGCTC 60.757 66.667 3.88 0.00 0.00 4.26
2441 2856 4.387343 CCATTGGCCACCCCTGCT 62.387 66.667 3.88 0.00 0.00 4.24
2450 2865 2.918230 GCATTCTGCAGCCATTGGCC 62.918 60.000 23.99 10.41 42.59 5.36
2451 2866 1.520787 GCATTCTGCAGCCATTGGC 60.521 57.895 20.38 20.38 44.26 4.52
2452 2867 1.226859 CGCATTCTGCAGCCATTGG 60.227 57.895 9.47 0.00 45.36 3.16
2453 2868 0.171679 TTCGCATTCTGCAGCCATTG 59.828 50.000 9.47 4.81 45.36 2.82
2454 2869 0.889994 TTTCGCATTCTGCAGCCATT 59.110 45.000 9.47 0.00 45.36 3.16
2455 2870 0.889994 TTTTCGCATTCTGCAGCCAT 59.110 45.000 9.47 0.00 45.36 4.40
2456 2871 0.889994 ATTTTCGCATTCTGCAGCCA 59.110 45.000 9.47 0.00 45.36 4.75
2457 2872 2.849880 TATTTTCGCATTCTGCAGCC 57.150 45.000 9.47 0.00 45.36 4.85
2458 2873 6.810888 TTTTATATTTTCGCATTCTGCAGC 57.189 33.333 9.47 0.00 45.36 5.25
2459 2874 8.633408 GCTATTTTATATTTTCGCATTCTGCAG 58.367 33.333 7.63 7.63 45.36 4.41
2460 2875 8.134261 TGCTATTTTATATTTTCGCATTCTGCA 58.866 29.630 0.00 0.00 45.36 4.41
2461 2876 8.420189 GTGCTATTTTATATTTTCGCATTCTGC 58.580 33.333 0.00 0.00 40.69 4.26
2462 2877 9.449550 TGTGCTATTTTATATTTTCGCATTCTG 57.550 29.630 0.00 0.00 0.00 3.02
2463 2878 9.669353 CTGTGCTATTTTATATTTTCGCATTCT 57.331 29.630 0.00 0.00 0.00 2.40
2464 2879 8.420189 GCTGTGCTATTTTATATTTTCGCATTC 58.580 33.333 0.00 0.00 0.00 2.67
2465 2880 8.137437 AGCTGTGCTATTTTATATTTTCGCATT 58.863 29.630 0.00 0.00 36.99 3.56
2466 2881 7.592533 CAGCTGTGCTATTTTATATTTTCGCAT 59.407 33.333 5.25 0.00 36.40 4.73
2467 2882 6.912051 CAGCTGTGCTATTTTATATTTTCGCA 59.088 34.615 5.25 0.00 36.40 5.10
2468 2883 7.312888 CAGCTGTGCTATTTTATATTTTCGC 57.687 36.000 5.25 0.00 36.40 4.70
2493 2908 2.122813 ATAGAGAGGGCCCCGGTG 60.123 66.667 21.43 0.00 0.00 4.94
2494 2909 1.072505 TAGATAGAGAGGGCCCCGGT 61.073 60.000 21.43 1.98 0.00 5.28
2495 2910 0.323908 CTAGATAGAGAGGGCCCCGG 60.324 65.000 21.43 0.00 0.00 5.73
2496 2911 0.968393 GCTAGATAGAGAGGGCCCCG 60.968 65.000 21.43 0.00 0.00 5.73
2497 2912 0.616395 GGCTAGATAGAGAGGGCCCC 60.616 65.000 21.43 10.60 34.19 5.80
2498 2913 0.115349 TGGCTAGATAGAGAGGGCCC 59.885 60.000 16.46 16.46 38.89 5.80
2499 2914 2.107366 GATGGCTAGATAGAGAGGGCC 58.893 57.143 0.00 0.00 39.93 5.80
2500 2915 2.107366 GGATGGCTAGATAGAGAGGGC 58.893 57.143 0.00 0.00 0.00 5.19
2501 2916 3.464720 TGGATGGCTAGATAGAGAGGG 57.535 52.381 0.00 0.00 0.00 4.30
2502 2917 5.127519 CAGAATGGATGGCTAGATAGAGAGG 59.872 48.000 0.00 0.00 0.00 3.69
2503 2918 5.394443 GCAGAATGGATGGCTAGATAGAGAG 60.394 48.000 0.00 0.00 35.86 3.20
2504 2919 4.465660 GCAGAATGGATGGCTAGATAGAGA 59.534 45.833 0.00 0.00 35.86 3.10
2505 2920 4.677514 CGCAGAATGGATGGCTAGATAGAG 60.678 50.000 0.00 0.00 35.86 2.43
2506 2921 3.194329 CGCAGAATGGATGGCTAGATAGA 59.806 47.826 0.00 0.00 35.86 1.98
2507 2922 3.519579 CGCAGAATGGATGGCTAGATAG 58.480 50.000 0.00 0.00 35.86 2.08
2508 2923 2.354103 GCGCAGAATGGATGGCTAGATA 60.354 50.000 0.30 0.00 35.86 1.98
2509 2924 1.610102 GCGCAGAATGGATGGCTAGAT 60.610 52.381 0.30 0.00 35.86 1.98
2510 2925 0.250038 GCGCAGAATGGATGGCTAGA 60.250 55.000 0.30 0.00 35.86 2.43
2511 2926 0.533531 TGCGCAGAATGGATGGCTAG 60.534 55.000 5.66 0.00 35.86 3.42
2512 2927 0.109153 ATGCGCAGAATGGATGGCTA 59.891 50.000 18.32 0.00 35.86 3.93
2513 2928 1.152819 ATGCGCAGAATGGATGGCT 60.153 52.632 18.32 0.00 35.86 4.75
2514 2929 1.285023 GATGCGCAGAATGGATGGC 59.715 57.895 18.32 0.00 35.86 4.40
2515 2930 1.572941 CGATGCGCAGAATGGATGG 59.427 57.895 18.32 0.00 35.86 3.51
2528 2943 1.225991 TTTGCACGAATCGCGATGC 60.226 52.632 24.47 23.10 44.57 3.91
2529 2944 0.179227 TGTTTGCACGAATCGCGATG 60.179 50.000 24.47 13.82 44.57 3.84
2530 2945 0.179225 GTGTTTGCACGAATCGCGAT 60.179 50.000 17.62 17.62 44.57 4.58
2531 2946 1.203065 GTGTTTGCACGAATCGCGA 59.797 52.632 13.09 13.09 44.57 5.87
2583 2998 5.106752 GCTGCAAAGGTTTGAACTTCAAAAA 60.107 36.000 16.79 0.00 46.53 1.94
2584 2999 4.391523 GCTGCAAAGGTTTGAACTTCAAAA 59.608 37.500 16.79 1.47 46.53 2.44
2585 3000 3.932089 GCTGCAAAGGTTTGAACTTCAAA 59.068 39.130 12.12 12.12 43.37 2.69
2586 3001 3.520569 GCTGCAAAGGTTTGAACTTCAA 58.479 40.909 6.63 0.00 40.55 2.69
2587 3002 2.479389 CGCTGCAAAGGTTTGAACTTCA 60.479 45.455 6.63 0.00 40.55 3.02
2588 3003 2.119457 CGCTGCAAAGGTTTGAACTTC 58.881 47.619 6.63 0.00 40.55 3.01
2589 3004 1.476488 ACGCTGCAAAGGTTTGAACTT 59.524 42.857 6.63 0.00 40.55 2.66
2590 3005 1.102978 ACGCTGCAAAGGTTTGAACT 58.897 45.000 6.63 0.00 40.55 3.01
2591 3006 2.650608 CTACGCTGCAAAGGTTTGAAC 58.349 47.619 6.63 0.00 40.55 3.18
2592 3007 1.001815 GCTACGCTGCAAAGGTTTGAA 60.002 47.619 6.63 0.00 40.55 2.69
2593 3008 0.591170 GCTACGCTGCAAAGGTTTGA 59.409 50.000 6.63 0.00 40.55 2.69
2594 3009 0.310543 TGCTACGCTGCAAAGGTTTG 59.689 50.000 0.00 0.00 40.29 2.93
2595 3010 2.714259 TGCTACGCTGCAAAGGTTT 58.286 47.368 0.00 0.00 40.29 3.27
2596 3011 4.473643 TGCTACGCTGCAAAGGTT 57.526 50.000 0.00 0.00 40.29 3.50
2602 3017 1.946768 AGAAAACTTTGCTACGCTGCA 59.053 42.857 0.00 0.00 41.65 4.41
2603 3018 2.688364 AGAAAACTTTGCTACGCTGC 57.312 45.000 0.00 0.00 0.00 5.25
2604 3019 5.786401 AGATAGAAAACTTTGCTACGCTG 57.214 39.130 0.00 0.00 0.00 5.18
2605 3020 6.864342 TCTAGATAGAAAACTTTGCTACGCT 58.136 36.000 0.00 0.00 0.00 5.07
2606 3021 7.521509 TTCTAGATAGAAAACTTTGCTACGC 57.478 36.000 0.00 0.00 39.22 4.42
2607 3022 9.522804 AGATTCTAGATAGAAAACTTTGCTACG 57.477 33.333 6.40 0.00 44.63 3.51
2733 3148 9.809395 TCTAGAATCTAGGATAAATCTTTCGGA 57.191 33.333 16.47 0.00 0.00 4.55
2742 3157 9.386122 AGCTTTCCATCTAGAATCTAGGATAAA 57.614 33.333 16.47 10.96 0.00 1.40
2743 3158 8.964533 AGCTTTCCATCTAGAATCTAGGATAA 57.035 34.615 16.47 4.76 0.00 1.75
2744 3159 8.964533 AAGCTTTCCATCTAGAATCTAGGATA 57.035 34.615 16.47 2.95 0.00 2.59
2745 3160 7.870426 AAGCTTTCCATCTAGAATCTAGGAT 57.130 36.000 16.47 6.87 0.00 3.24
2746 3161 7.504403 CAAAGCTTTCCATCTAGAATCTAGGA 58.496 38.462 16.47 5.18 0.00 2.94
2747 3162 6.204495 GCAAAGCTTTCCATCTAGAATCTAGG 59.796 42.308 16.47 2.83 0.00 3.02
2748 3163 6.204495 GGCAAAGCTTTCCATCTAGAATCTAG 59.796 42.308 9.23 10.93 0.00 2.43
2749 3164 6.058183 GGCAAAGCTTTCCATCTAGAATCTA 58.942 40.000 9.23 0.00 0.00 1.98
2750 3165 4.886489 GGCAAAGCTTTCCATCTAGAATCT 59.114 41.667 9.23 0.00 0.00 2.40
2751 3166 4.641989 TGGCAAAGCTTTCCATCTAGAATC 59.358 41.667 19.97 0.00 0.00 2.52
2752 3167 4.400567 GTGGCAAAGCTTTCCATCTAGAAT 59.599 41.667 24.04 0.00 31.83 2.40
2753 3168 3.758554 GTGGCAAAGCTTTCCATCTAGAA 59.241 43.478 24.04 5.89 31.83 2.10
2754 3169 3.347216 GTGGCAAAGCTTTCCATCTAGA 58.653 45.455 24.04 0.00 31.83 2.43
2755 3170 2.096496 CGTGGCAAAGCTTTCCATCTAG 59.904 50.000 24.04 15.77 31.83 2.43
2756 3171 2.083774 CGTGGCAAAGCTTTCCATCTA 58.916 47.619 24.04 6.48 31.83 1.98
2757 3172 0.883833 CGTGGCAAAGCTTTCCATCT 59.116 50.000 24.04 0.00 31.83 2.90
2758 3173 0.733909 GCGTGGCAAAGCTTTCCATC 60.734 55.000 24.04 17.74 31.83 3.51
2759 3174 1.181098 AGCGTGGCAAAGCTTTCCAT 61.181 50.000 24.04 12.24 37.97 3.41
2760 3175 1.827789 AGCGTGGCAAAGCTTTCCA 60.828 52.632 19.97 19.97 37.97 3.53
2761 3176 1.372128 CAGCGTGGCAAAGCTTTCC 60.372 57.895 9.23 13.81 39.27 3.13
2762 3177 2.018324 GCAGCGTGGCAAAGCTTTC 61.018 57.895 9.23 4.47 39.27 2.62
2763 3178 2.028043 GCAGCGTGGCAAAGCTTT 59.972 55.556 14.91 5.69 39.27 3.51
2764 3179 3.218470 TGCAGCGTGGCAAAGCTT 61.218 55.556 14.91 0.00 39.27 3.74
2770 3185 2.422231 AAACCTTTGCAGCGTGGCA 61.422 52.632 0.00 0.00 43.19 4.92
2771 3186 1.950630 CAAACCTTTGCAGCGTGGC 60.951 57.895 0.00 0.00 0.00 5.01
2772 3187 0.102120 TTCAAACCTTTGCAGCGTGG 59.898 50.000 0.00 0.00 38.05 4.94
2773 3188 1.199624 GTTCAAACCTTTGCAGCGTG 58.800 50.000 0.00 0.00 38.05 5.34
2774 3189 1.102978 AGTTCAAACCTTTGCAGCGT 58.897 45.000 0.00 0.00 38.05 5.07
2775 3190 2.119457 GAAGTTCAAACCTTTGCAGCG 58.881 47.619 0.00 0.00 38.05 5.18
2776 3191 3.163630 TGAAGTTCAAACCTTTGCAGC 57.836 42.857 2.20 0.00 38.05 5.25
2777 3192 4.800471 GTCTTGAAGTTCAAACCTTTGCAG 59.200 41.667 18.55 4.64 35.73 4.41
2778 3193 4.219507 TGTCTTGAAGTTCAAACCTTTGCA 59.780 37.500 18.55 7.68 35.73 4.08
2779 3194 4.743493 TGTCTTGAAGTTCAAACCTTTGC 58.257 39.130 18.55 5.56 35.73 3.68
2780 3195 6.799512 AGATGTCTTGAAGTTCAAACCTTTG 58.200 36.000 18.55 6.82 35.73 2.77
2781 3196 7.410120 AAGATGTCTTGAAGTTCAAACCTTT 57.590 32.000 18.55 10.68 35.73 3.11
2782 3197 7.410120 AAAGATGTCTTGAAGTTCAAACCTT 57.590 32.000 18.55 13.24 35.73 3.50
2783 3198 7.410120 AAAAGATGTCTTGAAGTTCAAACCT 57.590 32.000 18.55 12.17 35.73 3.50
2784 3199 9.185192 CATAAAAGATGTCTTGAAGTTCAAACC 57.815 33.333 18.55 12.20 35.73 3.27
2785 3200 9.736023 ACATAAAAGATGTCTTGAAGTTCAAAC 57.264 29.630 18.55 17.68 35.73 2.93
2786 3201 9.734620 CACATAAAAGATGTCTTGAAGTTCAAA 57.265 29.630 18.55 5.42 35.73 2.69
2787 3202 9.119418 TCACATAAAAGATGTCTTGAAGTTCAA 57.881 29.630 17.16 17.16 36.12 2.69
2788 3203 8.675705 TCACATAAAAGATGTCTTGAAGTTCA 57.324 30.769 0.08 0.08 36.12 3.18
2789 3204 8.993121 TCTCACATAAAAGATGTCTTGAAGTTC 58.007 33.333 0.00 0.00 36.12 3.01
2790 3205 8.908786 TCTCACATAAAAGATGTCTTGAAGTT 57.091 30.769 0.00 0.00 36.12 2.66
2791 3206 8.370940 TCTCTCACATAAAAGATGTCTTGAAGT 58.629 33.333 0.00 0.00 36.12 3.01
2792 3207 8.768957 TCTCTCACATAAAAGATGTCTTGAAG 57.231 34.615 0.00 0.00 36.12 3.02
2793 3208 9.559732 TTTCTCTCACATAAAAGATGTCTTGAA 57.440 29.630 0.00 0.00 36.12 2.69
2794 3209 8.993121 GTTTCTCTCACATAAAAGATGTCTTGA 58.007 33.333 0.00 0.00 36.12 3.02
2795 3210 8.777413 TGTTTCTCTCACATAAAAGATGTCTTG 58.223 33.333 0.00 0.00 36.12 3.02
2796 3211 8.908786 TGTTTCTCTCACATAAAAGATGTCTT 57.091 30.769 0.00 0.00 37.91 3.01
2797 3212 8.908786 TTGTTTCTCTCACATAAAAGATGTCT 57.091 30.769 0.00 0.00 0.00 3.41
2798 3213 9.950680 TTTTGTTTCTCTCACATAAAAGATGTC 57.049 29.630 0.00 0.00 0.00 3.06
2834 3249 7.429920 GCAACACAACTAACTTTTCGTATGAAA 59.570 33.333 6.00 6.00 42.21 2.69
2835 3250 6.908284 GCAACACAACTAACTTTTCGTATGAA 59.092 34.615 0.00 0.00 0.00 2.57
2836 3251 6.037281 TGCAACACAACTAACTTTTCGTATGA 59.963 34.615 0.00 0.00 0.00 2.15
2837 3252 6.140108 GTGCAACACAACTAACTTTTCGTATG 59.860 38.462 0.00 0.00 36.32 2.39
2838 3253 6.183360 TGTGCAACACAACTAACTTTTCGTAT 60.183 34.615 0.00 0.00 45.67 3.06
2839 3254 5.121925 TGTGCAACACAACTAACTTTTCGTA 59.878 36.000 0.00 0.00 45.67 3.43
2840 3255 4.083217 TGTGCAACACAACTAACTTTTCGT 60.083 37.500 0.00 0.00 45.67 3.85
2841 3256 4.407818 TGTGCAACACAACTAACTTTTCG 58.592 39.130 0.00 0.00 45.67 3.46
2842 3257 5.636837 TCTGTGCAACACAACTAACTTTTC 58.363 37.500 1.64 0.00 45.67 2.29
2843 3258 5.637006 TCTGTGCAACACAACTAACTTTT 57.363 34.783 1.64 0.00 45.67 2.27
2844 3259 5.590259 AGATCTGTGCAACACAACTAACTTT 59.410 36.000 0.00 0.00 45.67 2.66
2845 3260 5.126067 AGATCTGTGCAACACAACTAACTT 58.874 37.500 0.00 0.00 45.67 2.66
2846 3261 4.708177 AGATCTGTGCAACACAACTAACT 58.292 39.130 0.00 0.00 45.67 2.24
2847 3262 5.424121 AAGATCTGTGCAACACAACTAAC 57.576 39.130 0.00 0.00 45.67 2.34
2848 3263 7.561021 TTTAAGATCTGTGCAACACAACTAA 57.439 32.000 0.00 0.00 45.67 2.24
2849 3264 6.293407 GCTTTAAGATCTGTGCAACACAACTA 60.293 38.462 0.00 0.00 45.67 2.24
2850 3265 5.506317 GCTTTAAGATCTGTGCAACACAACT 60.506 40.000 0.00 0.00 45.67 3.16
2851 3266 4.676924 GCTTTAAGATCTGTGCAACACAAC 59.323 41.667 0.00 0.00 45.67 3.32
2852 3267 4.337836 TGCTTTAAGATCTGTGCAACACAA 59.662 37.500 0.00 0.00 45.67 3.33
2853 3268 3.882288 TGCTTTAAGATCTGTGCAACACA 59.118 39.130 0.00 0.00 45.67 3.72
2854 3269 4.488126 TGCTTTAAGATCTGTGCAACAC 57.512 40.909 0.00 0.00 45.67 3.32
2856 3271 7.221452 CCAATATTGCTTTAAGATCTGTGCAAC 59.779 37.037 19.76 2.27 42.01 4.17
2857 3272 7.122501 TCCAATATTGCTTTAAGATCTGTGCAA 59.877 33.333 19.69 19.69 43.09 4.08
2858 3273 6.602803 TCCAATATTGCTTTAAGATCTGTGCA 59.397 34.615 10.11 1.97 0.00 4.57
2859 3274 6.914757 GTCCAATATTGCTTTAAGATCTGTGC 59.085 38.462 10.11 0.00 0.00 4.57
2860 3275 7.988737 TGTCCAATATTGCTTTAAGATCTGTG 58.011 34.615 10.11 0.00 0.00 3.66
2861 3276 8.462016 GTTGTCCAATATTGCTTTAAGATCTGT 58.538 33.333 10.11 0.00 0.00 3.41
2862 3277 7.917505 GGTTGTCCAATATTGCTTTAAGATCTG 59.082 37.037 10.11 0.00 0.00 2.90
2863 3278 7.615365 TGGTTGTCCAATATTGCTTTAAGATCT 59.385 33.333 10.11 0.00 41.25 2.75
2864 3279 7.771183 TGGTTGTCCAATATTGCTTTAAGATC 58.229 34.615 10.11 0.00 41.25 2.75
2865 3280 7.147846 CCTGGTTGTCCAATATTGCTTTAAGAT 60.148 37.037 10.11 0.00 43.81 2.40
2866 3281 6.152661 CCTGGTTGTCCAATATTGCTTTAAGA 59.847 38.462 10.11 0.00 43.81 2.10
2867 3282 6.152661 TCCTGGTTGTCCAATATTGCTTTAAG 59.847 38.462 10.11 1.79 43.81 1.85
2868 3283 6.013379 TCCTGGTTGTCCAATATTGCTTTAA 58.987 36.000 10.11 0.04 43.81 1.52
2869 3284 5.575157 TCCTGGTTGTCCAATATTGCTTTA 58.425 37.500 10.11 0.00 43.81 1.85
2870 3285 4.415596 TCCTGGTTGTCCAATATTGCTTT 58.584 39.130 10.11 0.00 43.81 3.51
2871 3286 4.046286 TCCTGGTTGTCCAATATTGCTT 57.954 40.909 10.11 0.00 43.81 3.91
2872 3287 3.737559 TCCTGGTTGTCCAATATTGCT 57.262 42.857 10.11 0.00 43.81 3.91
2873 3288 4.278419 GGTATCCTGGTTGTCCAATATTGC 59.722 45.833 10.11 0.00 43.81 3.56
2874 3289 5.445069 TGGTATCCTGGTTGTCCAATATTG 58.555 41.667 8.58 8.58 43.81 1.90
2875 3290 5.399038 CCTGGTATCCTGGTTGTCCAATATT 60.399 44.000 0.00 0.00 43.81 1.28
2876 3291 4.104738 CCTGGTATCCTGGTTGTCCAATAT 59.895 45.833 0.00 0.00 43.81 1.28
2877 3292 3.458118 CCTGGTATCCTGGTTGTCCAATA 59.542 47.826 0.00 0.00 43.81 1.90
2878 3293 2.242196 CCTGGTATCCTGGTTGTCCAAT 59.758 50.000 0.00 0.00 43.81 3.16
2879 3294 1.633432 CCTGGTATCCTGGTTGTCCAA 59.367 52.381 0.00 0.00 43.81 3.53
2880 3295 1.285280 CCTGGTATCCTGGTTGTCCA 58.715 55.000 0.00 0.00 42.05 4.02
2881 3296 0.546598 CCCTGGTATCCTGGTTGTCC 59.453 60.000 10.06 0.00 40.44 4.02
2882 3297 0.107165 GCCCTGGTATCCTGGTTGTC 60.107 60.000 10.06 0.00 40.44 3.18
2883 3298 1.571773 GGCCCTGGTATCCTGGTTGT 61.572 60.000 10.06 0.00 40.44 3.32
2884 3299 1.227383 GGCCCTGGTATCCTGGTTG 59.773 63.158 10.06 0.00 40.44 3.77
2885 3300 2.375345 CGGCCCTGGTATCCTGGTT 61.375 63.158 0.00 0.00 40.44 3.67
2886 3301 2.768344 CGGCCCTGGTATCCTGGT 60.768 66.667 0.00 0.00 40.44 4.00
2887 3302 3.560251 CCGGCCCTGGTATCCTGG 61.560 72.222 0.00 4.97 41.51 4.45
2888 3303 3.560251 CCCGGCCCTGGTATCCTG 61.560 72.222 0.00 0.00 0.00 3.86
2889 3304 4.900259 CCCCGGCCCTGGTATCCT 62.900 72.222 0.00 0.00 0.00 3.24
2891 3306 3.873812 CACCCCGGCCCTGGTATC 61.874 72.222 10.39 0.00 32.32 2.24
2901 3316 2.463589 TTAGAACAGCTGCACCCCGG 62.464 60.000 15.27 0.00 0.00 5.73
2902 3317 0.605319 TTTAGAACAGCTGCACCCCG 60.605 55.000 15.27 0.00 0.00 5.73
2903 3318 1.616159 TTTTAGAACAGCTGCACCCC 58.384 50.000 15.27 0.00 0.00 4.95
2904 3319 3.367395 GGATTTTTAGAACAGCTGCACCC 60.367 47.826 15.27 0.00 0.00 4.61
2905 3320 3.255642 TGGATTTTTAGAACAGCTGCACC 59.744 43.478 15.27 2.79 0.00 5.01
2906 3321 4.229876 GTGGATTTTTAGAACAGCTGCAC 58.770 43.478 15.27 8.20 0.00 4.57
2907 3322 3.058293 CGTGGATTTTTAGAACAGCTGCA 60.058 43.478 15.27 0.00 0.00 4.41
2908 3323 3.058224 ACGTGGATTTTTAGAACAGCTGC 60.058 43.478 15.27 0.00 0.00 5.25
2909 3324 4.378459 GGACGTGGATTTTTAGAACAGCTG 60.378 45.833 13.48 13.48 0.00 4.24
2910 3325 3.751698 GGACGTGGATTTTTAGAACAGCT 59.248 43.478 0.00 0.00 0.00 4.24
2911 3326 3.119955 GGGACGTGGATTTTTAGAACAGC 60.120 47.826 0.00 0.00 0.00 4.40
2912 3327 4.154195 CAGGGACGTGGATTTTTAGAACAG 59.846 45.833 0.00 0.00 0.00 3.16
2913 3328 4.069304 CAGGGACGTGGATTTTTAGAACA 58.931 43.478 0.00 0.00 0.00 3.18
2914 3329 3.119955 GCAGGGACGTGGATTTTTAGAAC 60.120 47.826 0.00 0.00 0.00 3.01
2915 3330 3.078837 GCAGGGACGTGGATTTTTAGAA 58.921 45.455 0.00 0.00 0.00 2.10
2916 3331 2.039216 TGCAGGGACGTGGATTTTTAGA 59.961 45.455 0.00 0.00 0.00 2.10
2917 3332 2.420022 CTGCAGGGACGTGGATTTTTAG 59.580 50.000 5.57 0.00 0.00 1.85
2918 3333 2.039216 TCTGCAGGGACGTGGATTTTTA 59.961 45.455 15.13 0.00 0.00 1.52
2919 3334 1.202879 TCTGCAGGGACGTGGATTTTT 60.203 47.619 15.13 0.00 0.00 1.94
2920 3335 0.400213 TCTGCAGGGACGTGGATTTT 59.600 50.000 15.13 0.00 0.00 1.82
2921 3336 0.400213 TTCTGCAGGGACGTGGATTT 59.600 50.000 15.13 0.00 0.00 2.17
2922 3337 0.620556 ATTCTGCAGGGACGTGGATT 59.379 50.000 15.13 0.00 0.00 3.01
2923 3338 0.107508 CATTCTGCAGGGACGTGGAT 60.108 55.000 15.13 0.00 0.00 3.41
2924 3339 1.296392 CATTCTGCAGGGACGTGGA 59.704 57.895 15.13 0.00 0.00 4.02
2925 3340 1.003355 ACATTCTGCAGGGACGTGG 60.003 57.895 15.13 0.00 0.00 4.94
2926 3341 0.320683 TGACATTCTGCAGGGACGTG 60.321 55.000 15.13 8.33 0.00 4.49
2927 3342 0.320771 GTGACATTCTGCAGGGACGT 60.321 55.000 15.13 6.28 0.00 4.34
2928 3343 1.021390 GGTGACATTCTGCAGGGACG 61.021 60.000 15.13 2.81 0.00 4.79
2929 3344 1.021390 CGGTGACATTCTGCAGGGAC 61.021 60.000 15.13 5.27 0.00 4.46
2930 3345 1.296392 CGGTGACATTCTGCAGGGA 59.704 57.895 15.13 3.26 0.00 4.20
2931 3346 1.746615 CCGGTGACATTCTGCAGGG 60.747 63.158 15.13 6.64 0.00 4.45
2932 3347 1.746615 CCCGGTGACATTCTGCAGG 60.747 63.158 15.13 0.00 0.00 4.85
2933 3348 2.401766 GCCCGGTGACATTCTGCAG 61.402 63.158 7.63 7.63 0.00 4.41
2934 3349 2.359850 GCCCGGTGACATTCTGCA 60.360 61.111 0.00 0.00 0.00 4.41
2935 3350 2.359850 TGCCCGGTGACATTCTGC 60.360 61.111 0.00 0.00 0.00 4.26
2936 3351 2.390599 CGTGCCCGGTGACATTCTG 61.391 63.158 0.00 0.00 0.00 3.02
2937 3352 2.047274 CGTGCCCGGTGACATTCT 60.047 61.111 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.