Multiple sequence alignment - TraesCS3A01G463500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G463500 chr3A 100.000 4917 0 0 1 4917 697744347 697739431 0.000000e+00 9081.0
1 TraesCS3A01G463500 chr3B 93.127 1935 82 17 3028 4917 750139954 750138026 0.000000e+00 2789.0
2 TraesCS3A01G463500 chr3B 86.681 1419 130 31 1588 2972 750141366 750139973 0.000000e+00 1519.0
3 TraesCS3A01G463500 chr3B 86.913 298 18 4 1 290 750158743 750158459 1.030000e-81 315.0
4 TraesCS3A01G463500 chr3B 87.149 249 12 12 850 1084 750142180 750141938 1.050000e-66 265.0
5 TraesCS3A01G463500 chr3B 90.090 111 6 4 378 485 750157622 750157514 6.640000e-29 139.0
6 TraesCS3A01G463500 chr3B 78.325 203 17 8 587 763 750142580 750142379 6.730000e-19 106.0
7 TraesCS3A01G463500 chr3B 100.000 28 0 0 299 326 794697511 794697538 9.000000e-03 52.8
8 TraesCS3A01G463500 chr3D 93.321 1048 46 6 3889 4917 562700467 562699425 0.000000e+00 1526.0
9 TraesCS3A01G463500 chr2A 92.446 887 41 12 829 1703 484996833 484995961 0.000000e+00 1243.0
10 TraesCS3A01G463500 chrUn 97.143 350 3 1 1 343 295179021 295179370 7.090000e-163 584.0
11 TraesCS3A01G463500 chrUn 100.000 28 0 0 299 326 340128772 340128799 9.000000e-03 52.8
12 TraesCS3A01G463500 chr7D 84.791 263 27 7 896 1149 540441724 540441466 8.170000e-63 252.0
13 TraesCS3A01G463500 chr7A 83.650 263 30 7 896 1149 366389247 366388989 8.230000e-58 235.0
14 TraesCS3A01G463500 chr6D 83.270 263 31 7 896 1149 209443468 209443726 3.830000e-56 230.0
15 TraesCS3A01G463500 chr2B 83.562 73 8 3 300 368 699213888 699213960 1.140000e-06 65.8
16 TraesCS3A01G463500 chr6B 84.483 58 8 1 480 536 2219704 2219647 6.880000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G463500 chr3A 697739431 697744347 4916 True 9081.00 9081 100.0000 1 4917 1 chr3A.!!$R1 4916
1 TraesCS3A01G463500 chr3B 750138026 750142580 4554 True 1169.75 2789 86.3205 587 4917 4 chr3B.!!$R1 4330
2 TraesCS3A01G463500 chr3B 750157514 750158743 1229 True 227.00 315 88.5015 1 485 2 chr3B.!!$R2 484
3 TraesCS3A01G463500 chr3D 562699425 562700467 1042 True 1526.00 1526 93.3210 3889 4917 1 chr3D.!!$R1 1028
4 TraesCS3A01G463500 chr2A 484995961 484996833 872 True 1243.00 1243 92.4460 829 1703 1 chr2A.!!$R1 874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
597 1358 0.040499 TGATTTAAGGGCCCCACCAC 59.960 55.0 21.43 6.85 42.05 4.16 F
993 1924 0.329261 TGATTCTCTGCCTGGGGTTG 59.671 55.0 0.00 0.00 0.00 3.77 F
1996 3049 0.604578 TAAGGCTTCTTACCACGCGT 59.395 50.0 5.58 5.58 32.23 6.01 F
3638 4725 0.042731 CTTCCTCTCACCCCCTACCA 59.957 60.0 0.00 0.00 0.00 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1993 3046 0.572125 GCAAACAGAAAAGCACACGC 59.428 50.0 0.00 0.0 38.99 5.34 R
2221 3275 0.806868 ATGCCTGCTTGTTCATCGTG 59.193 50.0 0.00 0.0 0.00 4.35 R
3704 4791 0.108898 CTCACAGACCTGAGAAGGCG 60.109 60.0 3.76 0.0 40.28 5.52 R
4556 5678 0.251209 GTCGGGCCCTTCCTTTCTTT 60.251 55.0 22.43 0.0 34.39 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.514136 TTATACATTTTATTTTGCGCCATAGC 57.486 30.769 4.18 0.00 37.71 2.97
57 58 5.104259 AGCGTTAGGATTCTCTGGATTTT 57.896 39.130 0.00 0.00 0.00 1.82
84 85 1.324134 CTTGCGCGCCCATTTTATTTG 59.676 47.619 30.77 0.00 0.00 2.32
85 86 0.244994 TGCGCGCCCATTTTATTTGT 59.755 45.000 30.77 0.00 0.00 2.83
89 90 3.723542 GCGCGCCCATTTTATTTGTTTTC 60.724 43.478 23.24 0.00 0.00 2.29
90 91 3.481146 CGCGCCCATTTTATTTGTTTTCG 60.481 43.478 0.00 0.00 0.00 3.46
156 165 9.669887 AACAATAATATGGTGCAAAAATCATGT 57.330 25.926 0.00 0.00 0.00 3.21
166 175 7.102993 GGTGCAAAAATCATGTTAATTAGGGT 58.897 34.615 0.00 0.00 0.00 4.34
177 186 9.875708 TCATGTTAATTAGGGTAATAATGGCTT 57.124 29.630 0.00 0.00 0.00 4.35
180 189 9.577222 TGTTAATTAGGGTAATAATGGCTTACC 57.423 33.333 5.14 5.14 44.89 2.85
220 229 1.680249 GGAAGAAGAAGGAGGCGCATT 60.680 52.381 10.83 0.00 0.00 3.56
235 244 2.223135 GCGCATTAAAGAAGACCAGAGC 60.223 50.000 0.30 0.00 0.00 4.09
240 249 4.801330 TTAAAGAAGACCAGAGCGATCA 57.199 40.909 2.38 0.00 0.00 2.92
297 1031 1.403323 CGGTCGTTCCCCTAGTAAGAC 59.597 57.143 0.00 0.00 0.00 3.01
298 1032 1.753649 GGTCGTTCCCCTAGTAAGACC 59.246 57.143 0.00 0.00 39.63 3.85
299 1033 2.450476 GTCGTTCCCCTAGTAAGACCA 58.550 52.381 0.00 0.00 0.00 4.02
333 1070 9.733556 ATTTCTGGTGTTTGTTGTATACTCATA 57.266 29.630 4.17 0.00 0.00 2.15
393 1151 9.996554 ACCAAATAAAATCTTACAGGGAAAAAG 57.003 29.630 0.00 0.00 0.00 2.27
394 1152 9.435688 CCAAATAAAATCTTACAGGGAAAAAGG 57.564 33.333 0.00 0.00 0.00 3.11
415 1174 6.228616 AGGAAATCTACTCTTAAGTCCAGC 57.771 41.667 1.63 0.00 36.92 4.85
418 1177 6.536941 GGAAATCTACTCTTAAGTCCAGCTTG 59.463 42.308 1.63 0.00 38.05 4.01
419 1178 5.606348 ATCTACTCTTAAGTCCAGCTTGG 57.394 43.478 1.63 0.00 38.05 3.61
439 1198 7.281100 AGCTTGGAAATTCTTATTTCTAGGACG 59.719 37.037 9.26 0.00 45.81 4.79
469 1228 9.181805 GTTCTAAGTTTTATTTCTCTGCCAAAC 57.818 33.333 0.00 0.00 0.00 2.93
470 1229 8.458573 TCTAAGTTTTATTTCTCTGCCAAACA 57.541 30.769 0.00 0.00 0.00 2.83
485 1246 4.141801 TGCCAAACAGTACTGAGTGTTACT 60.142 41.667 29.30 0.83 46.46 2.24
486 1247 4.448060 GCCAAACAGTACTGAGTGTTACTC 59.552 45.833 29.30 2.11 46.46 2.59
487 1248 4.989168 CCAAACAGTACTGAGTGTTACTCC 59.011 45.833 29.30 0.00 46.46 3.85
488 1249 4.868314 AACAGTACTGAGTGTTACTCCC 57.132 45.455 29.30 0.00 45.54 4.30
489 1250 4.115398 ACAGTACTGAGTGTTACTCCCT 57.885 45.455 29.30 0.00 44.44 4.20
490 1251 4.080687 ACAGTACTGAGTGTTACTCCCTC 58.919 47.826 29.30 0.00 44.44 4.30
491 1252 3.444388 CAGTACTGAGTGTTACTCCCTCC 59.556 52.174 18.45 0.00 44.44 4.30
492 1253 2.696526 ACTGAGTGTTACTCCCTCCA 57.303 50.000 6.52 0.00 44.44 3.86
493 1254 3.191888 ACTGAGTGTTACTCCCTCCAT 57.808 47.619 6.52 0.00 44.44 3.41
494 1255 3.100671 ACTGAGTGTTACTCCCTCCATC 58.899 50.000 6.52 0.00 44.44 3.51
495 1256 2.432510 CTGAGTGTTACTCCCTCCATCC 59.567 54.545 6.52 0.00 44.44 3.51
496 1257 1.763545 GAGTGTTACTCCCTCCATCCC 59.236 57.143 0.00 0.00 39.28 3.85
497 1258 1.080498 AGTGTTACTCCCTCCATCCCA 59.920 52.381 0.00 0.00 0.00 4.37
498 1259 1.913419 GTGTTACTCCCTCCATCCCAA 59.087 52.381 0.00 0.00 0.00 4.12
499 1260 2.307686 GTGTTACTCCCTCCATCCCAAA 59.692 50.000 0.00 0.00 0.00 3.28
500 1261 2.990284 TGTTACTCCCTCCATCCCAAAA 59.010 45.455 0.00 0.00 0.00 2.44
501 1262 3.596046 TGTTACTCCCTCCATCCCAAAAT 59.404 43.478 0.00 0.00 0.00 1.82
502 1263 4.791334 TGTTACTCCCTCCATCCCAAAATA 59.209 41.667 0.00 0.00 0.00 1.40
503 1264 5.254267 TGTTACTCCCTCCATCCCAAAATAA 59.746 40.000 0.00 0.00 0.00 1.40
504 1265 4.965283 ACTCCCTCCATCCCAAAATAAA 57.035 40.909 0.00 0.00 0.00 1.40
505 1266 5.487861 ACTCCCTCCATCCCAAAATAAAT 57.512 39.130 0.00 0.00 0.00 1.40
506 1267 5.211201 ACTCCCTCCATCCCAAAATAAATG 58.789 41.667 0.00 0.00 0.00 2.32
507 1268 5.043432 ACTCCCTCCATCCCAAAATAAATGA 60.043 40.000 0.00 0.00 0.00 2.57
508 1269 6.041910 TCCCTCCATCCCAAAATAAATGAT 57.958 37.500 0.00 0.00 0.00 2.45
509 1270 6.451714 TCCCTCCATCCCAAAATAAATGATT 58.548 36.000 0.00 0.00 0.00 2.57
510 1271 6.908029 TCCCTCCATCCCAAAATAAATGATTT 59.092 34.615 0.00 0.00 39.56 2.17
511 1272 6.993902 CCCTCCATCCCAAAATAAATGATTTG 59.006 38.462 0.00 0.00 37.82 2.32
512 1273 7.147514 CCCTCCATCCCAAAATAAATGATTTGA 60.148 37.037 0.00 0.00 37.82 2.69
513 1274 7.712205 CCTCCATCCCAAAATAAATGATTTGAC 59.288 37.037 0.00 0.00 37.82 3.18
514 1275 8.378115 TCCATCCCAAAATAAATGATTTGACT 57.622 30.769 0.00 0.00 37.82 3.41
515 1276 8.824783 TCCATCCCAAAATAAATGATTTGACTT 58.175 29.630 0.00 0.00 37.82 3.01
516 1277 9.452287 CCATCCCAAAATAAATGATTTGACTTT 57.548 29.630 0.00 0.00 37.82 2.66
544 1305 8.370493 ACTAAAGTTAGTAAAAAGTTCCGACC 57.630 34.615 1.81 0.00 41.92 4.79
545 1306 6.624352 AAAGTTAGTAAAAAGTTCCGACCC 57.376 37.500 0.00 0.00 0.00 4.46
546 1307 4.309933 AGTTAGTAAAAAGTTCCGACCCG 58.690 43.478 0.00 0.00 0.00 5.28
560 1321 2.730550 GACCCGGTCGAACTCTAAAA 57.269 50.000 0.65 0.00 0.00 1.52
561 1322 3.030668 GACCCGGTCGAACTCTAAAAA 57.969 47.619 0.65 0.00 0.00 1.94
562 1323 3.593096 GACCCGGTCGAACTCTAAAAAT 58.407 45.455 0.65 0.00 0.00 1.82
563 1324 4.747810 GACCCGGTCGAACTCTAAAAATA 58.252 43.478 0.65 0.00 0.00 1.40
564 1325 4.498241 ACCCGGTCGAACTCTAAAAATAC 58.502 43.478 0.00 0.00 0.00 1.89
565 1326 4.021192 ACCCGGTCGAACTCTAAAAATACA 60.021 41.667 0.00 0.00 0.00 2.29
566 1327 4.565564 CCCGGTCGAACTCTAAAAATACAG 59.434 45.833 0.00 0.00 0.00 2.74
567 1328 5.404946 CCGGTCGAACTCTAAAAATACAGA 58.595 41.667 0.00 0.00 0.00 3.41
568 1329 5.865552 CCGGTCGAACTCTAAAAATACAGAA 59.134 40.000 0.00 0.00 0.00 3.02
569 1330 6.034683 CCGGTCGAACTCTAAAAATACAGAAG 59.965 42.308 0.00 0.00 0.00 2.85
570 1331 6.585322 CGGTCGAACTCTAAAAATACAGAAGT 59.415 38.462 0.00 0.00 0.00 3.01
571 1332 7.201333 CGGTCGAACTCTAAAAATACAGAAGTC 60.201 40.741 0.00 0.00 0.00 3.01
572 1333 7.813627 GGTCGAACTCTAAAAATACAGAAGTCT 59.186 37.037 0.00 0.00 0.00 3.24
573 1334 9.837525 GTCGAACTCTAAAAATACAGAAGTCTA 57.162 33.333 0.00 0.00 0.00 2.59
589 1350 8.523658 ACAGAAGTCTAAAAATGATTTAAGGGC 58.476 33.333 0.00 0.00 0.00 5.19
597 1358 0.040499 TGATTTAAGGGCCCCACCAC 59.960 55.000 21.43 6.85 42.05 4.16
620 1381 4.436998 CGACCCGGTCAGACAGCC 62.437 72.222 17.87 0.00 32.09 4.85
621 1382 2.997897 GACCCGGTCAGACAGCCT 60.998 66.667 13.05 0.00 32.09 4.58
624 1385 3.775654 CCGGTCAGACAGCCTCCC 61.776 72.222 2.17 0.00 0.00 4.30
646 1407 2.559668 GCCTCCTCTCTGATCTGATCTG 59.440 54.545 17.82 16.82 0.00 2.90
648 1409 4.669700 CCTCCTCTCTGATCTGATCTGAT 58.330 47.826 22.32 14.33 36.78 2.90
649 1410 4.703575 CCTCCTCTCTGATCTGATCTGATC 59.296 50.000 27.10 27.10 42.19 2.92
650 1411 4.325972 TCCTCTCTGATCTGATCTGATCG 58.674 47.826 27.54 22.95 44.12 3.69
653 1414 2.557490 CTCTGATCTGATCTGATCGCCA 59.443 50.000 27.54 17.26 44.12 5.69
654 1415 2.295629 TCTGATCTGATCTGATCGCCAC 59.704 50.000 27.54 12.46 44.12 5.01
655 1416 1.342496 TGATCTGATCTGATCGCCACC 59.658 52.381 27.54 11.90 44.12 4.61
657 1418 1.300465 CTGATCTGATCGCCACCCG 60.300 63.158 12.65 0.00 38.61 5.28
719 1505 8.996988 TTTCACAAATACAAACAATCGTACTC 57.003 30.769 0.00 0.00 0.00 2.59
721 1507 6.932400 TCACAAATACAAACAATCGTACTCCT 59.068 34.615 0.00 0.00 0.00 3.69
722 1508 7.117236 TCACAAATACAAACAATCGTACTCCTC 59.883 37.037 0.00 0.00 0.00 3.71
724 1510 2.955614 ACAAACAATCGTACTCCTCCG 58.044 47.619 0.00 0.00 0.00 4.63
735 1521 5.308014 TCGTACTCCTCCGCTATATAAACA 58.692 41.667 0.00 0.00 0.00 2.83
737 1523 5.049198 CGTACTCCTCCGCTATATAAACACA 60.049 44.000 0.00 0.00 0.00 3.72
763 1549 2.311124 CGCTAACGAAATCCCCTTCT 57.689 50.000 0.00 0.00 43.93 2.85
764 1550 2.629051 CGCTAACGAAATCCCCTTCTT 58.371 47.619 0.00 0.00 43.93 2.52
765 1551 2.351726 CGCTAACGAAATCCCCTTCTTG 59.648 50.000 0.00 0.00 43.93 3.02
768 1554 1.826385 ACGAAATCCCCTTCTTGCTG 58.174 50.000 0.00 0.00 0.00 4.41
769 1555 1.073923 ACGAAATCCCCTTCTTGCTGT 59.926 47.619 0.00 0.00 0.00 4.40
770 1556 1.740025 CGAAATCCCCTTCTTGCTGTC 59.260 52.381 0.00 0.00 0.00 3.51
771 1557 2.795329 GAAATCCCCTTCTTGCTGTCA 58.205 47.619 0.00 0.00 0.00 3.58
772 1558 2.978156 AATCCCCTTCTTGCTGTCAA 57.022 45.000 0.00 0.00 0.00 3.18
773 1559 2.978156 ATCCCCTTCTTGCTGTCAAA 57.022 45.000 0.00 0.00 0.00 2.69
774 1560 2.746279 TCCCCTTCTTGCTGTCAAAA 57.254 45.000 0.00 0.00 0.00 2.44
775 1561 3.025322 TCCCCTTCTTGCTGTCAAAAA 57.975 42.857 0.00 0.00 0.00 1.94
984 1914 4.067896 TGGAGTTTGTTCTGATTCTCTGC 58.932 43.478 0.00 0.00 0.00 4.26
993 1924 0.329261 TGATTCTCTGCCTGGGGTTG 59.671 55.000 0.00 0.00 0.00 3.77
1056 1987 2.108157 TCGTGCTTGCTCGTGGTT 59.892 55.556 14.99 0.00 0.00 3.67
1172 2127 2.772568 TGTTGTGCTTGATTGGTTCG 57.227 45.000 0.00 0.00 0.00 3.95
1178 2133 1.269517 TGCTTGATTGGTTCGGTTTGC 60.270 47.619 0.00 0.00 0.00 3.68
1229 2184 6.408858 AAACTGCAACTAATATGTGTCGAG 57.591 37.500 0.00 0.00 0.00 4.04
1302 2258 4.877823 GTGCACTTCAAGATGACCATATCA 59.122 41.667 10.32 0.00 43.13 2.15
1315 2271 6.271488 TGACCATATCAGCAAAAGAAAAGG 57.729 37.500 0.00 0.00 31.91 3.11
1322 2278 8.919661 CATATCAGCAAAAGAAAAGGAAAAGAC 58.080 33.333 0.00 0.00 0.00 3.01
1324 2280 6.877236 TCAGCAAAAGAAAAGGAAAAGACAT 58.123 32.000 0.00 0.00 0.00 3.06
1326 2282 6.536224 CAGCAAAAGAAAAGGAAAAGACATGT 59.464 34.615 0.00 0.00 0.00 3.21
1327 2283 7.706179 CAGCAAAAGAAAAGGAAAAGACATGTA 59.294 33.333 0.00 0.00 0.00 2.29
1328 2284 7.706607 AGCAAAAGAAAAGGAAAAGACATGTAC 59.293 33.333 0.00 0.00 0.00 2.90
1384 2348 3.146066 TGGAAATGTGTCTAGTTGGTGC 58.854 45.455 0.00 0.00 0.00 5.01
1466 2431 7.254658 CGGTTCAGCTCTAACTTCAAAAAGTAA 60.255 37.037 8.07 0.00 45.07 2.24
1622 2669 2.939103 AGCGTTATCCATGTTGCTCTTC 59.061 45.455 0.00 0.00 0.00 2.87
1666 2714 5.825507 GGTTCAGTACCTACGGTTATACAG 58.174 45.833 0.00 0.00 44.10 2.74
1741 2789 1.200020 GCTGCTGCCGTAAGTTCATTT 59.800 47.619 3.85 0.00 0.00 2.32
1755 2803 8.020819 CGTAAGTTCATTTGCCTTTTCTTATCA 58.979 33.333 0.00 0.00 0.00 2.15
1819 2872 7.039313 AGTTTGTCAAATTCTTTCTGGTACC 57.961 36.000 4.43 4.43 0.00 3.34
1821 2874 7.342026 AGTTTGTCAAATTCTTTCTGGTACCTT 59.658 33.333 14.36 0.00 0.00 3.50
1826 2879 6.836527 TCAAATTCTTTCTGGTACCTTGGAAA 59.163 34.615 14.36 17.60 0.00 3.13
1827 2880 7.343316 TCAAATTCTTTCTGGTACCTTGGAAAA 59.657 33.333 14.36 7.67 0.00 2.29
1829 2882 5.382664 TCTTTCTGGTACCTTGGAAAACT 57.617 39.130 14.36 0.00 0.00 2.66
1831 2884 3.782656 TCTGGTACCTTGGAAAACTCC 57.217 47.619 14.36 0.00 0.00 3.85
1832 2885 3.323775 TCTGGTACCTTGGAAAACTCCT 58.676 45.455 14.36 0.00 0.00 3.69
1842 2895 7.523415 ACCTTGGAAAACTCCTCAAAAGTATA 58.477 34.615 0.00 0.00 0.00 1.47
1845 2898 8.617290 TTGGAAAACTCCTCAAAAGTATACTC 57.383 34.615 5.70 0.00 0.00 2.59
1851 2904 9.708092 AAACTCCTCAAAAGTATACTCTGTTAC 57.292 33.333 5.70 0.00 0.00 2.50
1875 2928 8.943909 ACTTAAGTTTCTACCATTTATCTCCG 57.056 34.615 1.12 0.00 0.00 4.63
1876 2929 7.494952 ACTTAAGTTTCTACCATTTATCTCCGC 59.505 37.037 1.12 0.00 0.00 5.54
1878 2931 5.741011 AGTTTCTACCATTTATCTCCGCAA 58.259 37.500 0.00 0.00 0.00 4.85
1879 2932 6.177610 AGTTTCTACCATTTATCTCCGCAAA 58.822 36.000 0.00 0.00 0.00 3.68
1892 2945 4.766404 CTCCGCAAATTTGGAGTTAAGT 57.234 40.909 19.47 0.00 45.48 2.24
1893 2946 5.121221 CTCCGCAAATTTGGAGTTAAGTT 57.879 39.130 19.47 0.00 45.48 2.66
1896 2949 4.447389 CCGCAAATTTGGAGTTAAGTTTGG 59.553 41.667 19.47 0.00 37.58 3.28
1912 2965 4.910195 AGTTTGGTGATGTCTTGCAGATA 58.090 39.130 0.00 0.00 0.00 1.98
1933 2986 9.264719 CAGATATATACTGCTGATTTGACACAA 57.735 33.333 0.00 0.00 0.00 3.33
1939 2992 5.284079 ACTGCTGATTTGACACAATTGTTC 58.716 37.500 8.77 10.55 35.47 3.18
1972 3025 2.297315 TGATAGATGCGGTGACCTGATC 59.703 50.000 0.00 0.66 0.00 2.92
1985 3038 2.517650 CCTGATCGAGGTAAGGCTTC 57.482 55.000 1.30 0.00 37.02 3.86
1995 3048 0.997196 GTAAGGCTTCTTACCACGCG 59.003 55.000 3.53 3.53 44.23 6.01
1996 3049 0.604578 TAAGGCTTCTTACCACGCGT 59.395 50.000 5.58 5.58 32.23 6.01
2001 3054 0.944311 CTTCTTACCACGCGTGTGCT 60.944 55.000 34.81 20.18 45.04 4.40
2016 3069 2.854185 GTGTGCTTTTCTGTTTGCTGTC 59.146 45.455 0.00 0.00 0.00 3.51
2026 3079 7.518731 TTTCTGTTTGCTGTCACATAAAAAC 57.481 32.000 4.08 4.08 0.00 2.43
2028 3081 5.065346 TCTGTTTGCTGTCACATAAAAACGA 59.935 36.000 0.00 4.40 31.71 3.85
2030 3083 3.889196 TGCTGTCACATAAAAACGACC 57.111 42.857 0.00 0.00 0.00 4.79
2031 3084 3.206964 TGCTGTCACATAAAAACGACCA 58.793 40.909 0.00 0.00 0.00 4.02
2033 3086 4.083537 TGCTGTCACATAAAAACGACCATC 60.084 41.667 0.00 0.00 0.00 3.51
2052 3105 4.396166 CCATCCCAACTTCATACAACACTC 59.604 45.833 0.00 0.00 0.00 3.51
2071 3125 5.304357 ACACTCGTATGGTATGGATGATGAA 59.696 40.000 0.00 0.00 0.00 2.57
2084 3138 8.946085 GTATGGATGATGAAGTAAACTTGTTGA 58.054 33.333 0.00 0.00 36.11 3.18
2162 3216 1.001633 GTTCGTCCCTACTTGCCTTCA 59.998 52.381 0.00 0.00 0.00 3.02
2165 3219 1.673033 CGTCCCTACTTGCCTTCAGTG 60.673 57.143 0.00 0.00 0.00 3.66
2179 3233 6.108687 TGCCTTCAGTGTGTTTATCTCTATG 58.891 40.000 0.00 0.00 0.00 2.23
2183 3237 9.003658 CCTTCAGTGTGTTTATCTCTATGTTTT 57.996 33.333 0.00 0.00 0.00 2.43
2185 3239 9.778741 TTCAGTGTGTTTATCTCTATGTTTTCT 57.221 29.630 0.00 0.00 0.00 2.52
2186 3240 9.778741 TCAGTGTGTTTATCTCTATGTTTTCTT 57.221 29.630 0.00 0.00 0.00 2.52
2189 3243 8.169268 GTGTGTTTATCTCTATGTTTTCTTCCG 58.831 37.037 0.00 0.00 0.00 4.30
2190 3244 7.148474 TGTGTTTATCTCTATGTTTTCTTCCGC 60.148 37.037 0.00 0.00 0.00 5.54
2191 3245 6.315393 TGTTTATCTCTATGTTTTCTTCCGCC 59.685 38.462 0.00 0.00 0.00 6.13
2193 3247 3.861840 TCTCTATGTTTTCTTCCGCCTG 58.138 45.455 0.00 0.00 0.00 4.85
2194 3248 2.352960 CTCTATGTTTTCTTCCGCCTGC 59.647 50.000 0.00 0.00 0.00 4.85
2195 3249 2.027192 TCTATGTTTTCTTCCGCCTGCT 60.027 45.455 0.00 0.00 0.00 4.24
2196 3250 2.489938 ATGTTTTCTTCCGCCTGCTA 57.510 45.000 0.00 0.00 0.00 3.49
2197 3251 2.264005 TGTTTTCTTCCGCCTGCTAA 57.736 45.000 0.00 0.00 0.00 3.09
2199 3253 2.152016 GTTTTCTTCCGCCTGCTAAGT 58.848 47.619 0.00 0.00 0.00 2.24
2200 3254 1.808411 TTTCTTCCGCCTGCTAAGTG 58.192 50.000 0.00 0.00 0.00 3.16
2202 3256 2.046314 TTCCGCCTGCTAAGTGCC 60.046 61.111 0.00 0.00 42.00 5.01
2204 3258 1.261938 TTCCGCCTGCTAAGTGCCTA 61.262 55.000 0.00 0.00 42.00 3.93
2205 3259 1.227380 CCGCCTGCTAAGTGCCTAG 60.227 63.158 0.00 0.00 42.00 3.02
2206 3260 1.227380 CGCCTGCTAAGTGCCTAGG 60.227 63.158 3.67 3.67 42.00 3.02
2209 3263 2.014068 GCCTGCTAAGTGCCTAGGTTG 61.014 57.143 11.31 0.00 42.00 3.77
2210 3264 1.555075 CCTGCTAAGTGCCTAGGTTGA 59.445 52.381 11.31 0.00 42.00 3.18
2212 3266 3.462021 CTGCTAAGTGCCTAGGTTGATC 58.538 50.000 11.31 0.00 42.00 2.92
2213 3267 2.170607 TGCTAAGTGCCTAGGTTGATCC 59.829 50.000 11.31 0.00 42.00 3.36
2214 3268 2.485657 GCTAAGTGCCTAGGTTGATCCC 60.486 54.545 11.31 0.00 34.21 3.85
2215 3269 1.972588 AAGTGCCTAGGTTGATCCCT 58.027 50.000 11.31 0.00 38.70 4.20
2217 3271 2.279173 AGTGCCTAGGTTGATCCCTTT 58.721 47.619 11.31 0.00 35.97 3.11
2218 3272 2.649816 AGTGCCTAGGTTGATCCCTTTT 59.350 45.455 11.31 0.00 35.97 2.27
2219 3273 3.076032 AGTGCCTAGGTTGATCCCTTTTT 59.924 43.478 11.31 0.00 35.97 1.94
2273 3327 3.809279 TGCCAGTGATATTAATGCTGTCG 59.191 43.478 0.00 0.00 0.00 4.35
2311 3365 7.554959 AGGAACTCAAGAGAACAGGTAATTA 57.445 36.000 3.73 0.00 0.00 1.40
2312 3366 7.387643 AGGAACTCAAGAGAACAGGTAATTAC 58.612 38.462 7.09 7.09 0.00 1.89
2336 3390 3.870419 CCACACCTCATTTTGTTTGGTTG 59.130 43.478 0.00 0.00 29.63 3.77
2340 3394 6.760770 CACACCTCATTTTGTTTGGTTGTAAT 59.239 34.615 0.00 0.00 0.00 1.89
2344 3398 9.892130 ACCTCATTTTGTTTGGTTGTAATAAAA 57.108 25.926 0.00 0.00 32.62 1.52
2379 3433 7.448588 TGTTTTGATTCAGAATGTTTTGTCG 57.551 32.000 0.00 0.00 37.40 4.35
2382 3436 6.552859 TTGATTCAGAATGTTTTGTCGCTA 57.447 33.333 0.00 0.00 37.40 4.26
2388 3454 8.722342 TTCAGAATGTTTTGTCGCTAATTTAC 57.278 30.769 0.00 0.00 37.40 2.01
2394 3460 9.615295 AATGTTTTGTCGCTAATTTACGTATTT 57.385 25.926 0.00 0.00 0.00 1.40
2395 3461 9.615295 ATGTTTTGTCGCTAATTTACGTATTTT 57.385 25.926 0.00 0.00 0.00 1.82
2398 3464 9.661187 TTTTGTCGCTAATTTACGTATTTTGAA 57.339 25.926 0.00 0.00 0.00 2.69
2474 3543 9.801714 GTTTGCATATTTTTATCTATTGCATGC 57.198 29.630 11.82 11.82 37.39 4.06
2499 3568 9.243637 GCAATAGTCATTTAAAAGTGTGTCAAA 57.756 29.630 0.00 0.00 0.00 2.69
2520 3589 9.239551 GTCAAAATACTTTATAACCCCTCAACT 57.760 33.333 0.00 0.00 0.00 3.16
2529 3598 8.974060 TTTATAACCCCTCAACTGTATTCATC 57.026 34.615 0.00 0.00 0.00 2.92
2536 3605 6.125029 CCCTCAACTGTATTCATCTTCCAAT 58.875 40.000 0.00 0.00 0.00 3.16
2665 3739 8.608317 GTTAATGCAGTTGTGTTAAACCAAAAT 58.392 29.630 0.00 0.00 0.00 1.82
2668 3742 4.208253 GCAGTTGTGTTAAACCAAAATCCG 59.792 41.667 0.00 0.00 0.00 4.18
2674 3748 7.798596 TGTGTTAAACCAAAATCCGTAGTAA 57.201 32.000 0.00 0.00 0.00 2.24
2685 3759 6.619801 AAATCCGTAGTAATGCTTGATTCC 57.380 37.500 0.00 0.00 0.00 3.01
2767 3841 3.994392 GTCAGCGGTATTCAAAAGACTCA 59.006 43.478 0.00 0.00 0.00 3.41
2862 3936 5.107298 GCACTTGATCTTGTTGTGAGTACTC 60.107 44.000 16.32 16.32 0.00 2.59
2863 3937 6.219473 CACTTGATCTTGTTGTGAGTACTCT 58.781 40.000 23.01 0.00 0.00 3.24
2864 3938 6.364706 CACTTGATCTTGTTGTGAGTACTCTC 59.635 42.308 23.01 19.55 40.79 3.20
2865 3939 6.266558 ACTTGATCTTGTTGTGAGTACTCTCT 59.733 38.462 23.01 2.66 40.98 3.10
2866 3940 6.018589 TGATCTTGTTGTGAGTACTCTCTG 57.981 41.667 23.01 9.35 40.98 3.35
2870 3947 4.672587 TGTTGTGAGTACTCTCTGCTTT 57.327 40.909 23.01 0.00 40.98 3.51
2871 3948 4.621991 TGTTGTGAGTACTCTCTGCTTTC 58.378 43.478 23.01 8.74 40.98 2.62
2879 3956 8.032451 GTGAGTACTCTCTGCTTTCTCTTAAAT 58.968 37.037 23.01 0.00 40.98 1.40
2955 4032 8.650143 TTCCCTAACTCAATCTGCTAATTTTT 57.350 30.769 0.00 0.00 0.00 1.94
2958 4035 8.186821 CCCTAACTCAATCTGCTAATTTTTCTG 58.813 37.037 0.00 0.00 0.00 3.02
2959 4036 8.186821 CCTAACTCAATCTGCTAATTTTTCTGG 58.813 37.037 0.00 0.00 0.00 3.86
2962 4039 7.373493 ACTCAATCTGCTAATTTTTCTGGTTG 58.627 34.615 0.00 0.00 0.00 3.77
2975 4052 8.877864 ATTTTTCTGGTTGTGAGTTATATGGA 57.122 30.769 0.00 0.00 0.00 3.41
2976 4053 8.877864 TTTTTCTGGTTGTGAGTTATATGGAT 57.122 30.769 0.00 0.00 0.00 3.41
2977 4054 8.506168 TTTTCTGGTTGTGAGTTATATGGATC 57.494 34.615 0.00 0.00 0.00 3.36
2978 4055 7.437713 TTCTGGTTGTGAGTTATATGGATCT 57.562 36.000 0.00 0.00 0.00 2.75
2979 4056 7.437713 TCTGGTTGTGAGTTATATGGATCTT 57.562 36.000 0.00 0.00 0.00 2.40
2980 4057 7.861629 TCTGGTTGTGAGTTATATGGATCTTT 58.138 34.615 0.00 0.00 0.00 2.52
2981 4058 8.328758 TCTGGTTGTGAGTTATATGGATCTTTT 58.671 33.333 0.00 0.00 0.00 2.27
2982 4059 9.613428 CTGGTTGTGAGTTATATGGATCTTTTA 57.387 33.333 0.00 0.00 0.00 1.52
2983 4060 9.391006 TGGTTGTGAGTTATATGGATCTTTTAC 57.609 33.333 0.00 0.00 0.00 2.01
2984 4061 8.837389 GGTTGTGAGTTATATGGATCTTTTACC 58.163 37.037 0.00 0.00 0.00 2.85
2985 4062 9.391006 GTTGTGAGTTATATGGATCTTTTACCA 57.609 33.333 0.00 0.00 40.57 3.25
2986 4063 8.958119 TGTGAGTTATATGGATCTTTTACCAC 57.042 34.615 0.00 0.00 39.06 4.16
2987 4064 8.544622 TGTGAGTTATATGGATCTTTTACCACA 58.455 33.333 0.00 0.00 39.06 4.17
2988 4065 9.561069 GTGAGTTATATGGATCTTTTACCACAT 57.439 33.333 0.00 0.00 39.06 3.21
2996 4073 8.747538 ATGGATCTTTTACCACATACTTTACC 57.252 34.615 0.00 0.00 39.06 2.85
2997 4074 7.924541 TGGATCTTTTACCACATACTTTACCT 58.075 34.615 0.00 0.00 0.00 3.08
2998 4075 9.049050 TGGATCTTTTACCACATACTTTACCTA 57.951 33.333 0.00 0.00 0.00 3.08
3011 4088 8.508875 ACATACTTTACCTAATGGTTGTTTTCG 58.491 33.333 0.00 0.00 46.05 3.46
3013 4090 6.063404 ACTTTACCTAATGGTTGTTTTCGGA 58.937 36.000 0.00 0.00 46.05 4.55
3018 4095 5.646360 ACCTAATGGTTGTTTTCGGACTATG 59.354 40.000 0.00 0.00 46.05 2.23
3019 4096 4.434713 AATGGTTGTTTTCGGACTATGC 57.565 40.909 0.00 0.00 0.00 3.14
3020 4097 1.801771 TGGTTGTTTTCGGACTATGCG 59.198 47.619 0.00 0.00 0.00 4.73
3021 4098 1.802365 GGTTGTTTTCGGACTATGCGT 59.198 47.619 0.00 0.00 31.47 5.24
3022 4099 2.995258 GGTTGTTTTCGGACTATGCGTA 59.005 45.455 0.00 0.00 31.47 4.42
3023 4100 3.181527 GGTTGTTTTCGGACTATGCGTAC 60.182 47.826 0.00 0.00 31.47 3.67
3024 4101 3.581024 TGTTTTCGGACTATGCGTACT 57.419 42.857 0.00 0.00 31.47 2.73
3025 4102 3.916761 TGTTTTCGGACTATGCGTACTT 58.083 40.909 0.00 0.00 31.47 2.24
3026 4103 3.922240 TGTTTTCGGACTATGCGTACTTC 59.078 43.478 0.00 0.00 31.47 3.01
3027 4104 4.171754 GTTTTCGGACTATGCGTACTTCT 58.828 43.478 0.00 0.00 31.47 2.85
3032 4109 4.024302 TCGGACTATGCGTACTTCTACATG 60.024 45.833 0.00 0.00 31.47 3.21
3221 4298 1.137086 AGATACTTGCCTCACGCGATT 59.863 47.619 15.93 0.00 42.08 3.34
3239 4316 5.556382 CGCGATTCGAGTTACTAATGCAAAT 60.556 40.000 10.88 0.00 41.67 2.32
3318 4395 3.840666 TCACTTTCCAAGAGAGGTATGCT 59.159 43.478 0.00 0.00 0.00 3.79
3339 4416 1.889105 ACTCTGTGGCACGCTTGTG 60.889 57.895 13.77 6.69 46.67 3.33
3422 4509 3.560636 AGTCCTGTGTAGTTTGTGCTT 57.439 42.857 0.00 0.00 0.00 3.91
3476 4563 8.531146 CAAAGAAACCTTTCAATGTATACCCAT 58.469 33.333 0.00 0.00 39.61 4.00
3486 4573 2.990195 TGTATACCCATCCCATCAGCT 58.010 47.619 0.00 0.00 0.00 4.24
3500 4587 3.211865 CATCAGCTCCACTGCATAATGT 58.788 45.455 0.00 0.00 46.76 2.71
3502 4589 2.236893 TCAGCTCCACTGCATAATGTGA 59.763 45.455 5.44 0.00 46.76 3.58
3504 4591 1.328680 GCTCCACTGCATAATGTGACG 59.671 52.381 5.44 0.00 36.38 4.35
3555 4642 3.148279 GATGTCGGGCTCGGGAGT 61.148 66.667 5.94 0.00 36.95 3.85
3621 4708 2.362120 GCATGCAGCAGGTCCCTT 60.362 61.111 14.21 0.00 44.79 3.95
3628 4715 0.906756 CAGCAGGTCCCTTCCTCTCA 60.907 60.000 0.00 0.00 35.37 3.27
3634 4721 2.184631 TCCCTTCCTCTCACCCCCT 61.185 63.158 0.00 0.00 0.00 4.79
3635 4722 0.858598 TCCCTTCCTCTCACCCCCTA 60.859 60.000 0.00 0.00 0.00 3.53
3636 4723 0.691413 CCCTTCCTCTCACCCCCTAC 60.691 65.000 0.00 0.00 0.00 3.18
3637 4724 0.691413 CCTTCCTCTCACCCCCTACC 60.691 65.000 0.00 0.00 0.00 3.18
3638 4725 0.042731 CTTCCTCTCACCCCCTACCA 59.957 60.000 0.00 0.00 0.00 3.25
3650 4737 1.686325 CCCTACCACCATCTCCCGTG 61.686 65.000 0.00 0.00 0.00 4.94
3653 4740 1.762957 CTACCACCATCTCCCGTGAAT 59.237 52.381 0.00 0.00 31.36 2.57
3704 4791 3.252458 ACTCTTGGTTAACATTGTTCGCC 59.748 43.478 5.07 9.86 0.00 5.54
3739 4826 1.394917 GTGAGCGGTAACAGCATTCAG 59.605 52.381 0.00 0.00 38.34 3.02
3742 4829 0.727398 GCGGTAACAGCATTCAGGAC 59.273 55.000 0.00 0.00 36.37 3.85
3799 4886 1.077644 CTGGAGCAGCTGCAGGATT 60.078 57.895 38.24 19.47 44.36 3.01
3811 4898 3.746751 GCTGCAGGATTGTCATGGACTAT 60.747 47.826 17.12 0.00 33.15 2.12
3817 4904 3.466836 GATTGTCATGGACTATGCCGAA 58.533 45.455 0.00 0.00 36.70 4.30
3875 4962 3.048475 CGAAGCAGCAGCAGCAGT 61.048 61.111 12.92 0.00 45.49 4.40
3876 4963 2.868920 GAAGCAGCAGCAGCAGTC 59.131 61.111 12.92 5.20 45.49 3.51
3877 4964 1.671704 GAAGCAGCAGCAGCAGTCT 60.672 57.895 12.92 0.00 45.49 3.24
3886 4982 1.375268 GCAGCAGTCTGGTCTGTCC 60.375 63.158 0.36 0.00 40.65 4.02
3887 4983 2.052779 CAGCAGTCTGGTCTGTCCA 58.947 57.895 0.36 0.00 45.01 4.02
3921 5017 3.365265 CAGCGCCCAGTGAAACCC 61.365 66.667 2.29 0.00 37.80 4.11
3929 5025 2.231235 GCCCAGTGAAACCCATGTAAAG 59.769 50.000 0.00 0.00 37.80 1.85
3939 5035 6.039270 TGAAACCCATGTAAAGAAGTTCTGTG 59.961 38.462 6.06 1.46 0.00 3.66
3972 5068 2.127270 CACGCACGCAACATGTCC 60.127 61.111 0.00 0.00 0.00 4.02
3979 5075 1.303236 CGCAACATGTCCTTCCCCA 60.303 57.895 0.00 0.00 0.00 4.96
4094 5190 8.082242 GTGAAGCATTTTCCAGTACAAAATACT 58.918 33.333 0.00 0.00 32.74 2.12
4098 5194 8.515414 AGCATTTTCCAGTACAAAATACTTCTC 58.485 33.333 0.00 0.00 32.74 2.87
4113 5209 4.679373 ACTTCTCTTCTCTTTGCTCACA 57.321 40.909 0.00 0.00 0.00 3.58
4117 5213 5.728637 TCTCTTCTCTTTGCTCACATGTA 57.271 39.130 0.00 0.00 0.00 2.29
4120 5216 5.610398 TCTTCTCTTTGCTCACATGTAACA 58.390 37.500 0.00 0.00 0.00 2.41
4121 5217 5.466728 TCTTCTCTTTGCTCACATGTAACAC 59.533 40.000 0.00 0.00 0.00 3.32
4128 5224 3.576550 TGCTCACATGTAACACCTGACTA 59.423 43.478 0.00 0.00 0.00 2.59
4130 5226 4.627467 GCTCACATGTAACACCTGACTAAG 59.373 45.833 0.00 0.00 0.00 2.18
4131 5227 5.784177 CTCACATGTAACACCTGACTAAGT 58.216 41.667 0.00 0.00 0.00 2.24
4135 5231 7.225931 TCACATGTAACACCTGACTAAGTTTTC 59.774 37.037 0.00 0.00 0.00 2.29
4136 5232 7.226720 CACATGTAACACCTGACTAAGTTTTCT 59.773 37.037 0.00 0.00 0.00 2.52
4138 5234 7.781548 TGTAACACCTGACTAAGTTTTCTTC 57.218 36.000 0.00 0.00 40.91 2.87
4143 5249 5.765182 CACCTGACTAAGTTTTCTTCCATGT 59.235 40.000 0.00 0.00 40.91 3.21
4146 5252 6.486657 CCTGACTAAGTTTTCTTCCATGTTCA 59.513 38.462 0.00 0.00 40.91 3.18
4200 5315 1.587088 GATTTGCAAGATGGGCGCG 60.587 57.895 0.00 0.00 0.00 6.86
4267 5386 7.010160 TCCAGGAACAAAAGGAGAACAATAAT 58.990 34.615 0.00 0.00 0.00 1.28
4268 5387 7.039784 TCCAGGAACAAAAGGAGAACAATAATG 60.040 37.037 0.00 0.00 0.00 1.90
4275 5394 7.673926 ACAAAAGGAGAACAATAATGTATGGGT 59.326 33.333 0.00 0.00 39.40 4.51
4276 5395 7.645058 AAAGGAGAACAATAATGTATGGGTG 57.355 36.000 0.00 0.00 39.40 4.61
4332 5451 2.739913 TGCTAAACCATGTTCGCACTAC 59.260 45.455 0.00 0.00 0.00 2.73
4556 5678 2.729360 CGACATCGTGTAACTGCAGAAA 59.271 45.455 23.35 4.48 31.75 2.52
4577 5700 1.674651 GAAAGGAAGGGCCCGACAC 60.675 63.158 18.44 8.52 37.37 3.67
4599 5722 3.684990 AGCTCTGCGGCTTCGACA 61.685 61.111 0.00 0.00 39.86 4.35
4666 5789 2.768527 TCCTGAGCTCTAAAGGACATGG 59.231 50.000 15.53 3.37 35.14 3.66
4817 5940 2.440409 GGACAGTGCTGGAACAATGAT 58.560 47.619 4.11 0.00 37.84 2.45
4831 5954 6.481954 GAACAATGATCGTGTTCCTAAACT 57.518 37.500 22.55 0.00 45.99 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.165428 GCGCAAAATAAAATGTATAAAGCAACA 58.835 29.630 0.30 0.00 0.00 3.33
37 38 5.462398 CGGTAAAATCCAGAGAATCCTAACG 59.538 44.000 0.00 0.00 33.66 3.18
69 70 3.430556 ACGAAAACAAATAAAATGGGCGC 59.569 39.130 0.00 0.00 0.00 6.53
71 72 5.120053 CCTGACGAAAACAAATAAAATGGGC 59.880 40.000 0.00 0.00 0.00 5.36
90 91 2.034812 CCTCTGCGTAAGGTATCCTGAC 59.965 54.545 0.00 0.00 32.13 3.51
220 229 4.495422 GTTGATCGCTCTGGTCTTCTTTA 58.505 43.478 0.00 0.00 0.00 1.85
235 244 1.452025 GTATCCGTGCATCGTTGATCG 59.548 52.381 0.00 1.24 41.41 3.69
240 249 0.526954 GGTCGTATCCGTGCATCGTT 60.527 55.000 0.00 0.00 37.94 3.85
252 261 0.530744 ACGAGTGCATGTGGTCGTAT 59.469 50.000 14.18 0.00 43.53 3.06
311 1045 8.771920 TTCTATGAGTATACAACAAACACCAG 57.228 34.615 5.50 0.00 0.00 4.00
367 1104 9.996554 CTTTTTCCCTGTAAGATTTTATTTGGT 57.003 29.630 0.00 0.00 34.07 3.67
368 1105 9.435688 CCTTTTTCCCTGTAAGATTTTATTTGG 57.564 33.333 0.00 0.00 34.07 3.28
374 1111 9.159254 AGATTTCCTTTTTCCCTGTAAGATTTT 57.841 29.630 0.00 0.00 34.07 1.82
375 1112 8.727100 AGATTTCCTTTTTCCCTGTAAGATTT 57.273 30.769 0.00 0.00 34.07 2.17
380 1138 7.985589 AGAGTAGATTTCCTTTTTCCCTGTAA 58.014 34.615 0.00 0.00 0.00 2.41
393 1151 6.228616 AGCTGGACTTAAGAGTAGATTTCC 57.771 41.667 10.09 3.53 35.88 3.13
394 1152 6.536941 CCAAGCTGGACTTAAGAGTAGATTTC 59.463 42.308 10.09 0.00 40.96 2.17
395 1153 6.213600 TCCAAGCTGGACTTAAGAGTAGATTT 59.786 38.462 10.09 0.63 42.67 2.17
396 1154 5.721960 TCCAAGCTGGACTTAAGAGTAGATT 59.278 40.000 10.09 5.96 42.67 2.40
469 1228 4.705337 GAGGGAGTAACACTCAGTACTG 57.295 50.000 17.17 17.17 46.79 2.74
485 1246 5.480058 TCATTTATTTTGGGATGGAGGGA 57.520 39.130 0.00 0.00 0.00 4.20
486 1247 6.752285 AATCATTTATTTTGGGATGGAGGG 57.248 37.500 0.00 0.00 0.00 4.30
487 1248 7.712205 GTCAAATCATTTATTTTGGGATGGAGG 59.288 37.037 0.00 0.00 35.54 4.30
488 1249 8.480501 AGTCAAATCATTTATTTTGGGATGGAG 58.519 33.333 0.00 0.00 35.54 3.86
489 1250 8.378115 AGTCAAATCATTTATTTTGGGATGGA 57.622 30.769 0.00 0.00 35.54 3.41
490 1251 9.452287 AAAGTCAAATCATTTATTTTGGGATGG 57.548 29.630 0.00 0.00 35.54 3.51
518 1279 9.476202 GGTCGGAACTTTTTACTAACTTTAGTA 57.524 33.333 4.98 4.98 43.36 1.82
519 1280 7.442364 GGGTCGGAACTTTTTACTAACTTTAGT 59.558 37.037 6.85 6.85 45.39 2.24
520 1281 7.359514 CGGGTCGGAACTTTTTACTAACTTTAG 60.360 40.741 0.00 0.00 36.82 1.85
521 1282 6.423604 CGGGTCGGAACTTTTTACTAACTTTA 59.576 38.462 0.00 0.00 0.00 1.85
522 1283 5.237127 CGGGTCGGAACTTTTTACTAACTTT 59.763 40.000 0.00 0.00 0.00 2.66
523 1284 4.751600 CGGGTCGGAACTTTTTACTAACTT 59.248 41.667 0.00 0.00 0.00 2.66
524 1285 4.309933 CGGGTCGGAACTTTTTACTAACT 58.690 43.478 0.00 0.00 0.00 2.24
525 1286 4.652175 CGGGTCGGAACTTTTTACTAAC 57.348 45.455 0.00 0.00 0.00 2.34
541 1302 2.730550 TTTTAGAGTTCGACCGGGTC 57.269 50.000 17.38 17.38 0.00 4.46
542 1303 3.690475 ATTTTTAGAGTTCGACCGGGT 57.310 42.857 6.32 0.00 0.00 5.28
543 1304 4.497300 TGTATTTTTAGAGTTCGACCGGG 58.503 43.478 6.32 0.00 0.00 5.73
544 1305 5.404946 TCTGTATTTTTAGAGTTCGACCGG 58.595 41.667 0.00 0.00 0.00 5.28
545 1306 6.585322 ACTTCTGTATTTTTAGAGTTCGACCG 59.415 38.462 0.00 0.00 0.00 4.79
546 1307 7.813627 AGACTTCTGTATTTTTAGAGTTCGACC 59.186 37.037 0.00 0.00 0.00 4.79
547 1308 8.745464 AGACTTCTGTATTTTTAGAGTTCGAC 57.255 34.615 0.00 0.00 0.00 4.20
563 1324 8.523658 GCCCTTAAATCATTTTTAGACTTCTGT 58.476 33.333 0.00 0.00 0.00 3.41
564 1325 7.976175 GGCCCTTAAATCATTTTTAGACTTCTG 59.024 37.037 0.00 0.00 0.00 3.02
565 1326 7.124298 GGGCCCTTAAATCATTTTTAGACTTCT 59.876 37.037 17.04 0.00 0.00 2.85
566 1327 7.265673 GGGCCCTTAAATCATTTTTAGACTTC 58.734 38.462 17.04 0.00 0.00 3.01
567 1328 6.156256 GGGGCCCTTAAATCATTTTTAGACTT 59.844 38.462 24.38 0.00 0.00 3.01
568 1329 5.661312 GGGGCCCTTAAATCATTTTTAGACT 59.339 40.000 24.38 0.00 0.00 3.24
569 1330 5.423931 TGGGGCCCTTAAATCATTTTTAGAC 59.576 40.000 25.93 0.00 0.00 2.59
570 1331 5.423931 GTGGGGCCCTTAAATCATTTTTAGA 59.576 40.000 25.93 0.00 0.00 2.10
571 1332 5.396324 GGTGGGGCCCTTAAATCATTTTTAG 60.396 44.000 25.93 0.00 0.00 1.85
572 1333 4.471747 GGTGGGGCCCTTAAATCATTTTTA 59.528 41.667 25.93 0.00 0.00 1.52
573 1334 3.265737 GGTGGGGCCCTTAAATCATTTTT 59.734 43.478 25.93 0.00 0.00 1.94
574 1335 2.843730 GGTGGGGCCCTTAAATCATTTT 59.156 45.455 25.93 0.00 0.00 1.82
575 1336 2.225753 TGGTGGGGCCCTTAAATCATTT 60.226 45.455 25.93 0.00 36.04 2.32
576 1337 1.364328 TGGTGGGGCCCTTAAATCATT 59.636 47.619 25.93 0.00 36.04 2.57
577 1338 1.014804 TGGTGGGGCCCTTAAATCAT 58.985 50.000 25.93 0.00 36.04 2.45
578 1339 0.040499 GTGGTGGGGCCCTTAAATCA 59.960 55.000 25.93 6.83 36.04 2.57
579 1340 0.040499 TGTGGTGGGGCCCTTAAATC 59.960 55.000 25.93 3.59 36.04 2.17
580 1341 0.252057 GTGTGGTGGGGCCCTTAAAT 60.252 55.000 25.93 0.00 36.04 1.40
581 1342 1.154221 GTGTGGTGGGGCCCTTAAA 59.846 57.895 25.93 0.00 36.04 1.52
582 1343 2.075355 CTGTGTGGTGGGGCCCTTAA 62.075 60.000 25.93 4.77 36.04 1.85
583 1344 2.450699 TGTGTGGTGGGGCCCTTA 60.451 61.111 25.93 8.70 36.04 2.69
584 1345 3.902112 CTGTGTGGTGGGGCCCTT 61.902 66.667 25.93 0.00 36.04 3.95
620 1381 1.152567 ATCAGAGAGGAGGCGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
621 1382 1.152652 GATCAGAGAGGAGGCGGGA 60.153 63.158 0.00 0.00 0.00 5.14
624 1385 1.541147 GATCAGATCAGAGAGGAGGCG 59.459 57.143 5.44 0.00 0.00 5.52
646 1407 3.192922 CGGTTTCGGGTGGCGATC 61.193 66.667 0.00 0.00 0.00 3.69
657 1418 2.308344 GGCTTATCTCGCCGGTTTC 58.692 57.895 1.90 0.00 37.87 2.78
664 1425 1.369321 CCCCTGAGGCTTATCTCGC 59.631 63.158 0.00 0.00 36.61 5.03
719 1505 5.241949 AGAGAGTGTGTTTATATAGCGGAGG 59.758 44.000 0.00 0.00 0.00 4.30
721 1507 5.049612 CGAGAGAGTGTGTTTATATAGCGGA 60.050 44.000 0.00 0.00 0.00 5.54
722 1508 5.147865 CGAGAGAGTGTGTTTATATAGCGG 58.852 45.833 0.00 0.00 0.00 5.52
724 1510 5.764131 AGCGAGAGAGTGTGTTTATATAGC 58.236 41.667 0.00 0.00 0.00 2.97
816 1723 4.521062 AGCGCCGGAAGCTAGCTG 62.521 66.667 20.16 6.72 44.05 4.24
817 1724 4.214327 GAGCGCCGGAAGCTAGCT 62.214 66.667 22.15 12.68 46.13 3.32
819 1726 4.593864 GGGAGCGCCGGAAGCTAG 62.594 72.222 22.15 0.00 46.13 3.42
939 1869 2.287009 CGAAAATCCCGCCAATCTTAGC 60.287 50.000 0.00 0.00 0.00 3.09
940 1870 2.287009 GCGAAAATCCCGCCAATCTTAG 60.287 50.000 0.00 0.00 46.22 2.18
941 1871 1.673920 GCGAAAATCCCGCCAATCTTA 59.326 47.619 0.00 0.00 46.22 2.10
1056 1987 0.909610 ATTCACCTCTCCCGGAGCAA 60.910 55.000 9.87 0.00 40.57 3.91
1151 2106 2.981805 CGAACCAATCAAGCACAACATG 59.018 45.455 0.00 0.00 0.00 3.21
1172 2127 1.592543 CGTTTGGAAGCAAAGCAAACC 59.407 47.619 0.00 0.00 33.63 3.27
1229 2184 5.098211 GCTGAAACCAACTTGATAAGCATC 58.902 41.667 0.00 0.00 0.00 3.91
1257 2212 5.853282 CACACTTCTAGTTACAATTTGCTGC 59.147 40.000 0.00 0.00 0.00 5.25
1258 2213 5.853282 GCACACTTCTAGTTACAATTTGCTG 59.147 40.000 0.00 0.00 0.00 4.41
1302 2258 6.643388 ACATGTCTTTTCCTTTTCTTTTGCT 58.357 32.000 0.00 0.00 0.00 3.91
1315 2271 6.183360 GCACCAGTGATAGTACATGTCTTTTC 60.183 42.308 0.00 0.00 0.00 2.29
1322 2278 5.118286 TGAATGCACCAGTGATAGTACATG 58.882 41.667 0.99 0.00 0.00 3.21
1324 2280 4.466015 TCTGAATGCACCAGTGATAGTACA 59.534 41.667 15.13 0.00 33.57 2.90
1326 2282 5.876651 ATCTGAATGCACCAGTGATAGTA 57.123 39.130 15.13 0.00 33.57 1.82
1327 2283 4.767578 ATCTGAATGCACCAGTGATAGT 57.232 40.909 15.13 0.00 33.57 2.12
1328 2284 4.210746 CGAATCTGAATGCACCAGTGATAG 59.789 45.833 15.13 4.33 33.57 2.08
1384 2348 3.877508 TGATTCTGAATCTGAGCATGCTG 59.122 43.478 28.27 12.32 38.72 4.41
1428 2392 2.028930 AGCTGAACCGTCTTGTAGGAAG 60.029 50.000 0.00 0.00 0.00 3.46
1466 2431 6.687081 TTGACGGAAACTGAAATTTACTGT 57.313 33.333 0.00 0.00 0.00 3.55
1622 2669 7.171167 TGAACCACAAAATAAAGCATCAATGTG 59.829 33.333 0.00 0.00 37.31 3.21
1666 2714 2.867109 ATATGGTAGTGGATGGCTGC 57.133 50.000 0.00 0.00 0.00 5.25
1811 2864 3.323775 AGGAGTTTTCCAAGGTACCAGA 58.676 45.455 15.94 4.86 46.64 3.86
1812 2865 3.072476 TGAGGAGTTTTCCAAGGTACCAG 59.928 47.826 15.94 6.00 46.64 4.00
1813 2866 3.050089 TGAGGAGTTTTCCAAGGTACCA 58.950 45.455 15.94 0.00 46.64 3.25
1814 2867 3.782656 TGAGGAGTTTTCCAAGGTACC 57.217 47.619 2.73 2.73 46.64 3.34
1815 2868 5.593095 ACTTTTGAGGAGTTTTCCAAGGTAC 59.407 40.000 0.00 0.00 46.64 3.34
1816 2869 5.762279 ACTTTTGAGGAGTTTTCCAAGGTA 58.238 37.500 0.00 0.00 46.64 3.08
1817 2870 4.610333 ACTTTTGAGGAGTTTTCCAAGGT 58.390 39.130 0.00 0.00 46.64 3.50
1819 2872 8.622948 AGTATACTTTTGAGGAGTTTTCCAAG 57.377 34.615 0.00 0.00 46.64 3.61
1821 2874 7.878127 CAGAGTATACTTTTGAGGAGTTTTCCA 59.122 37.037 6.88 0.00 46.64 3.53
1826 2879 9.091220 AGTAACAGAGTATACTTTTGAGGAGTT 57.909 33.333 19.39 10.74 0.00 3.01
1827 2880 8.653036 AGTAACAGAGTATACTTTTGAGGAGT 57.347 34.615 19.39 1.89 0.00 3.85
1851 2904 7.494625 TGCGGAGATAAATGGTAGAAACTTAAG 59.505 37.037 0.00 0.00 0.00 1.85
1872 2925 5.285651 CAAACTTAACTCCAAATTTGCGGA 58.714 37.500 12.92 4.92 0.00 5.54
1873 2926 4.447389 CCAAACTTAACTCCAAATTTGCGG 59.553 41.667 12.92 9.43 0.00 5.69
1874 2927 5.047188 ACCAAACTTAACTCCAAATTTGCG 58.953 37.500 12.92 8.22 0.00 4.85
1875 2928 6.045955 TCACCAAACTTAACTCCAAATTTGC 58.954 36.000 12.92 0.00 0.00 3.68
1876 2929 7.710475 ACATCACCAAACTTAACTCCAAATTTG 59.290 33.333 11.40 11.40 0.00 2.32
1878 2931 7.287696 AGACATCACCAAACTTAACTCCAAATT 59.712 33.333 0.00 0.00 0.00 1.82
1879 2932 6.777580 AGACATCACCAAACTTAACTCCAAAT 59.222 34.615 0.00 0.00 0.00 2.32
1912 2965 8.284945 ACAATTGTGTCAAATCAGCAGTATAT 57.715 30.769 11.07 0.00 29.49 0.86
1939 2992 3.136763 GCATCTATCACATGTCCAGGTG 58.863 50.000 5.76 5.76 43.72 4.00
1980 3033 1.666872 ACACGCGTGGTAAGAAGCC 60.667 57.895 39.21 0.00 34.19 4.35
1993 3046 0.572125 GCAAACAGAAAAGCACACGC 59.428 50.000 0.00 0.00 38.99 5.34
1995 3048 2.854185 GACAGCAAACAGAAAAGCACAC 59.146 45.455 0.00 0.00 0.00 3.82
1996 3049 2.491298 TGACAGCAAACAGAAAAGCACA 59.509 40.909 0.00 0.00 0.00 4.57
2001 3054 7.201393 CGTTTTTATGTGACAGCAAACAGAAAA 60.201 33.333 13.87 4.70 42.51 2.29
2016 3069 4.217550 AGTTGGGATGGTCGTTTTTATGTG 59.782 41.667 0.00 0.00 0.00 3.21
2026 3079 3.260475 TGTATGAAGTTGGGATGGTCG 57.740 47.619 0.00 0.00 0.00 4.79
2028 3081 4.079253 GTGTTGTATGAAGTTGGGATGGT 58.921 43.478 0.00 0.00 0.00 3.55
2030 3083 4.093408 CGAGTGTTGTATGAAGTTGGGATG 59.907 45.833 0.00 0.00 0.00 3.51
2031 3084 4.253685 CGAGTGTTGTATGAAGTTGGGAT 58.746 43.478 0.00 0.00 0.00 3.85
2033 3086 3.399330 ACGAGTGTTGTATGAAGTTGGG 58.601 45.455 0.00 0.00 0.00 4.12
2052 3105 7.872993 AGTTTACTTCATCATCCATACCATACG 59.127 37.037 0.00 0.00 0.00 3.06
2071 3125 4.827284 CCTGGGTCATTCAACAAGTTTACT 59.173 41.667 0.00 0.00 0.00 2.24
2162 3216 9.220767 GGAAGAAAACATAGAGATAAACACACT 57.779 33.333 0.00 0.00 0.00 3.55
2165 3219 7.180748 GCGGAAGAAAACATAGAGATAAACAC 58.819 38.462 0.00 0.00 0.00 3.32
2179 3233 2.095718 CACTTAGCAGGCGGAAGAAAAC 60.096 50.000 13.54 0.00 0.00 2.43
2183 3237 1.079127 GCACTTAGCAGGCGGAAGA 60.079 57.895 13.54 0.00 44.79 2.87
2190 3244 6.783963 GGATCAACCTAGGCACTTAGCAGG 62.784 54.167 9.30 0.00 41.12 4.85
2191 3245 3.742640 GGATCAACCTAGGCACTTAGCAG 60.743 52.174 9.30 0.00 41.75 4.24
2193 3247 2.485657 GGGATCAACCTAGGCACTTAGC 60.486 54.545 9.30 0.00 39.85 3.09
2194 3248 3.041946 AGGGATCAACCTAGGCACTTAG 58.958 50.000 9.30 0.00 39.65 2.18
2195 3249 3.130734 AGGGATCAACCTAGGCACTTA 57.869 47.619 9.30 0.00 39.65 2.24
2196 3250 1.972588 AGGGATCAACCTAGGCACTT 58.027 50.000 9.30 0.00 39.65 3.16
2197 3251 1.972588 AAGGGATCAACCTAGGCACT 58.027 50.000 9.30 0.00 40.87 4.40
2199 3253 3.825908 AAAAAGGGATCAACCTAGGCA 57.174 42.857 9.30 0.00 40.87 4.75
2217 3271 2.287547 GCCTGCTTGTTCATCGTGAAAA 60.288 45.455 2.65 0.00 38.22 2.29
2218 3272 1.266718 GCCTGCTTGTTCATCGTGAAA 59.733 47.619 2.65 0.00 38.22 2.69
2219 3273 0.874390 GCCTGCTTGTTCATCGTGAA 59.126 50.000 0.00 0.00 33.32 3.18
2221 3275 0.806868 ATGCCTGCTTGTTCATCGTG 59.193 50.000 0.00 0.00 0.00 4.35
2222 3276 2.401583 TATGCCTGCTTGTTCATCGT 57.598 45.000 0.00 0.00 0.00 3.73
2223 3277 2.615447 ACATATGCCTGCTTGTTCATCG 59.385 45.455 1.58 0.00 0.00 3.84
2224 3278 4.357142 CAACATATGCCTGCTTGTTCATC 58.643 43.478 1.58 0.00 30.23 2.92
2225 3279 3.131577 CCAACATATGCCTGCTTGTTCAT 59.868 43.478 1.58 0.00 30.23 2.57
2226 3280 2.492881 CCAACATATGCCTGCTTGTTCA 59.507 45.455 1.58 0.00 30.23 3.18
2227 3281 2.493278 ACCAACATATGCCTGCTTGTTC 59.507 45.455 1.58 0.00 30.23 3.18
2228 3282 2.528564 ACCAACATATGCCTGCTTGTT 58.471 42.857 1.58 0.00 32.76 2.83
2229 3283 2.220653 ACCAACATATGCCTGCTTGT 57.779 45.000 1.58 0.00 0.00 3.16
2230 3284 3.598019 AAACCAACATATGCCTGCTTG 57.402 42.857 1.58 0.00 0.00 4.01
2254 3308 4.740205 ACGACGACAGCATTAATATCACTG 59.260 41.667 0.00 0.00 0.00 3.66
2273 3327 4.365723 TGAGTTCCTCTAAACACAACGAC 58.634 43.478 0.00 0.00 28.73 4.34
2299 3353 3.009805 AGGTGTGGGGTAATTACCTGTTC 59.990 47.826 29.26 18.59 45.72 3.18
2311 3365 2.433970 CAAACAAAATGAGGTGTGGGGT 59.566 45.455 0.00 0.00 0.00 4.95
2312 3366 2.224257 CCAAACAAAATGAGGTGTGGGG 60.224 50.000 0.00 0.00 38.51 4.96
2314 3368 3.817709 ACCAAACAAAATGAGGTGTGG 57.182 42.857 0.00 0.00 46.01 4.17
2315 3369 4.502962 ACAACCAAACAAAATGAGGTGTG 58.497 39.130 0.00 0.00 31.86 3.82
2356 3410 6.198966 AGCGACAAAACATTCTGAATCAAAAC 59.801 34.615 0.00 0.00 0.00 2.43
2361 3415 8.452989 AAATTAGCGACAAAACATTCTGAATC 57.547 30.769 0.00 0.00 0.00 2.52
2376 3430 9.480538 TGAATTCAAAATACGTAAATTAGCGAC 57.519 29.630 5.45 0.00 0.00 5.19
2388 3454 9.825972 AGTACACAAGAATGAATTCAAAATACG 57.174 29.630 13.09 2.67 39.23 3.06
2426 3492 7.839680 AACTAAGGAAACATGTCAAGGATTT 57.160 32.000 0.00 0.00 0.00 2.17
2466 3532 8.875803 CACTTTTAAATGACTATTGCATGCAAT 58.124 29.630 39.40 39.40 46.85 3.56
2491 3560 8.164733 TGAGGGGTTATAAAGTATTTTGACACA 58.835 33.333 0.00 0.00 40.09 3.72
2511 3580 4.080356 TGGAAGATGAATACAGTTGAGGGG 60.080 45.833 0.00 0.00 0.00 4.79
2520 3589 8.750515 TGCTGATAAATTGGAAGATGAATACA 57.249 30.769 0.00 0.00 0.00 2.29
2529 3598 6.320672 AGTTCTGGATGCTGATAAATTGGAAG 59.679 38.462 0.00 0.00 0.00 3.46
2536 3605 4.842531 TCCAGTTCTGGATGCTGATAAA 57.157 40.909 16.47 0.00 32.09 1.40
2566 3635 8.231692 TCAAGATCAAGTTGTTTCCATAACAA 57.768 30.769 2.11 0.00 37.76 2.83
2648 3717 6.497437 ACTACGGATTTTGGTTTAACACAAC 58.503 36.000 0.00 0.00 0.00 3.32
2651 3720 7.271868 GCATTACTACGGATTTTGGTTTAACAC 59.728 37.037 0.00 0.00 0.00 3.32
2655 3724 7.390996 TCAAGCATTACTACGGATTTTGGTTTA 59.609 33.333 0.00 0.00 0.00 2.01
2659 3728 5.811399 TCAAGCATTACTACGGATTTTGG 57.189 39.130 0.00 0.00 0.00 3.28
2665 3739 4.161565 ACAGGAATCAAGCATTACTACGGA 59.838 41.667 0.00 0.00 32.61 4.69
2668 3742 6.583562 ACCTACAGGAATCAAGCATTACTAC 58.416 40.000 1.29 0.00 32.61 2.73
2674 3748 4.384208 GGTGTACCTACAGGAATCAAGCAT 60.384 45.833 1.29 0.00 36.78 3.79
2685 3759 4.467198 AAAATCCTCGGTGTACCTACAG 57.533 45.455 0.00 0.00 36.78 2.74
2767 3841 4.996788 GGAACATCTCCATGCAATTTCT 57.003 40.909 0.00 0.00 44.67 2.52
2789 3863 3.979911 TGAATGCCCAGTGACCATAATT 58.020 40.909 0.00 0.00 0.00 1.40
2792 3866 3.289836 CATTGAATGCCCAGTGACCATA 58.710 45.455 0.00 0.00 0.00 2.74
2801 3875 2.365370 GCCCCCATTGAATGCCCA 60.365 61.111 0.00 0.00 0.00 5.36
2887 3964 8.216423 ACATAATGCAGTAGAGGAAGATCAATT 58.784 33.333 0.00 0.00 0.00 2.32
2888 3965 7.743749 ACATAATGCAGTAGAGGAAGATCAAT 58.256 34.615 0.00 0.00 0.00 2.57
2893 3970 5.118990 GCAACATAATGCAGTAGAGGAAGA 58.881 41.667 0.00 0.00 45.70 2.87
2928 4005 8.650143 AAATTAGCAGATTGAGTTAGGGAAAA 57.350 30.769 0.00 0.00 0.00 2.29
2955 4032 7.437713 AAGATCCATATAACTCACAACCAGA 57.562 36.000 0.00 0.00 0.00 3.86
2958 4035 8.837389 GGTAAAAGATCCATATAACTCACAACC 58.163 37.037 0.00 0.00 0.00 3.77
2959 4036 9.391006 TGGTAAAAGATCCATATAACTCACAAC 57.609 33.333 0.00 0.00 0.00 3.32
2962 4039 8.958119 TGTGGTAAAAGATCCATATAACTCAC 57.042 34.615 0.00 0.00 36.09 3.51
2972 4049 7.924541 AGGTAAAGTATGTGGTAAAAGATCCA 58.075 34.615 0.00 0.00 0.00 3.41
2973 4050 9.895138 TTAGGTAAAGTATGTGGTAAAAGATCC 57.105 33.333 0.00 0.00 0.00 3.36
2976 4053 9.675464 CCATTAGGTAAAGTATGTGGTAAAAGA 57.325 33.333 0.00 0.00 0.00 2.52
2995 4072 5.448632 GCATAGTCCGAAAACAACCATTAGG 60.449 44.000 0.00 0.00 42.21 2.69
2996 4073 5.569413 GCATAGTCCGAAAACAACCATTAG 58.431 41.667 0.00 0.00 0.00 1.73
2997 4074 4.093703 CGCATAGTCCGAAAACAACCATTA 59.906 41.667 0.00 0.00 0.00 1.90
2998 4075 3.119990 CGCATAGTCCGAAAACAACCATT 60.120 43.478 0.00 0.00 0.00 3.16
3001 4078 1.802365 ACGCATAGTCCGAAAACAACC 59.198 47.619 0.00 0.00 0.00 3.77
3011 4088 5.008811 AGACATGTAGAAGTACGCATAGTCC 59.991 44.000 0.00 0.00 30.95 3.85
3013 4090 5.589050 TCAGACATGTAGAAGTACGCATAGT 59.411 40.000 0.00 0.00 30.95 2.12
3018 4095 3.109619 GCTCAGACATGTAGAAGTACGC 58.890 50.000 0.00 0.00 30.95 4.42
3019 4096 4.142578 ACTGCTCAGACATGTAGAAGTACG 60.143 45.833 6.02 0.00 30.95 3.67
3020 4097 5.317733 ACTGCTCAGACATGTAGAAGTAC 57.682 43.478 6.02 0.00 0.00 2.73
3021 4098 5.984695 AACTGCTCAGACATGTAGAAGTA 57.015 39.130 7.98 0.91 0.00 2.24
3022 4099 4.881019 AACTGCTCAGACATGTAGAAGT 57.119 40.909 0.00 0.00 0.00 3.01
3023 4100 5.960113 ACTAACTGCTCAGACATGTAGAAG 58.040 41.667 0.00 0.00 0.00 2.85
3024 4101 5.984695 ACTAACTGCTCAGACATGTAGAA 57.015 39.130 0.00 0.00 0.00 2.10
3025 4102 5.984695 AACTAACTGCTCAGACATGTAGA 57.015 39.130 0.00 0.00 0.00 2.59
3026 4103 8.598924 CAAATAACTAACTGCTCAGACATGTAG 58.401 37.037 0.00 0.00 0.00 2.74
3027 4104 7.064609 GCAAATAACTAACTGCTCAGACATGTA 59.935 37.037 0.00 0.00 0.00 2.29
3032 4109 4.201724 CGGCAAATAACTAACTGCTCAGAC 60.202 45.833 3.60 0.00 35.13 3.51
3108 4185 4.961438 ACCCGTAGTTCACCTAAAAAGA 57.039 40.909 0.00 0.00 0.00 2.52
3221 4298 7.865889 ACGATATCATTTGCATTAGTAACTCGA 59.134 33.333 3.12 0.00 0.00 4.04
3239 4316 1.895798 GGCAGATGAGGGACGATATCA 59.104 52.381 3.12 0.00 0.00 2.15
3339 4416 3.611766 ACAGGTGTAATAGGTGTCAGC 57.388 47.619 0.00 0.00 0.00 4.26
3340 4417 8.475639 AGTATAAACAGGTGTAATAGGTGTCAG 58.524 37.037 0.00 0.00 0.00 3.51
3382 4469 7.116805 CAGGACTAAATGAATTTTTCAAGGCAC 59.883 37.037 0.00 0.00 43.95 5.01
3486 4573 1.277842 ACCGTCACATTATGCAGTGGA 59.722 47.619 4.21 0.00 36.43 4.02
3500 4587 0.391597 GAAGGACAGGAACACCGTCA 59.608 55.000 0.00 0.00 33.67 4.35
3502 4589 0.763223 AGGAAGGACAGGAACACCGT 60.763 55.000 0.00 0.00 0.00 4.83
3504 4591 1.420138 TGAAGGAAGGACAGGAACACC 59.580 52.381 0.00 0.00 0.00 4.16
3555 4642 2.165641 CTGCTCAACCGTGTATACCAGA 59.834 50.000 0.00 0.00 0.00 3.86
3621 4708 1.390926 GTGGTAGGGGGTGAGAGGA 59.609 63.158 0.00 0.00 0.00 3.71
3628 4715 1.004361 GGAGATGGTGGTAGGGGGT 59.996 63.158 0.00 0.00 0.00 4.95
3634 4721 1.874129 ATTCACGGGAGATGGTGGTA 58.126 50.000 0.00 0.00 34.93 3.25
3635 4722 0.991920 AATTCACGGGAGATGGTGGT 59.008 50.000 0.00 0.00 34.93 4.16
3636 4723 1.340017 ACAATTCACGGGAGATGGTGG 60.340 52.381 6.71 0.00 34.93 4.61
3637 4724 1.739466 CACAATTCACGGGAGATGGTG 59.261 52.381 6.71 5.19 35.50 4.17
3638 4725 1.950484 GCACAATTCACGGGAGATGGT 60.950 52.381 6.71 0.00 0.00 3.55
3650 4737 2.126346 GCGGCAGTGGCACAATTC 60.126 61.111 21.41 5.20 44.16 2.17
3677 4764 5.313280 ACAATGTTAACCAAGAGTGGGTA 57.687 39.130 2.48 0.00 45.94 3.69
3682 4769 3.252458 GGCGAACAATGTTAACCAAGAGT 59.748 43.478 10.86 0.00 0.00 3.24
3704 4791 0.108898 CTCACAGACCTGAGAAGGCG 60.109 60.000 3.76 0.00 40.28 5.52
3739 4826 1.489230 CCCAGGTAGGTTATGTGGTCC 59.511 57.143 0.00 0.00 34.66 4.46
3742 4829 0.179056 CGCCCAGGTAGGTTATGTGG 60.179 60.000 0.00 0.00 34.66 4.17
3799 4886 1.831106 AGTTCGGCATAGTCCATGACA 59.169 47.619 0.00 0.00 43.67 3.58
3817 4904 0.249398 GGTCCATCTTGTACCGCAGT 59.751 55.000 0.00 0.00 0.00 4.40
3886 4982 1.453524 CTGTGTCTTCTTCGCTCGTTG 59.546 52.381 0.00 0.00 0.00 4.10
3887 4983 1.772182 CTGTGTCTTCTTCGCTCGTT 58.228 50.000 0.00 0.00 0.00 3.85
3921 5017 7.425577 TGATGACACAGAACTTCTTTACATG 57.574 36.000 0.00 0.00 0.00 3.21
3929 5025 6.254589 GTGCTACTATGATGACACAGAACTTC 59.745 42.308 0.00 0.00 0.00 3.01
3939 5035 2.128035 GCGTGGTGCTACTATGATGAC 58.872 52.381 0.00 0.00 41.73 3.06
3967 5063 0.548682 AGCAGAGTGGGGAAGGACAT 60.549 55.000 0.00 0.00 0.00 3.06
3972 5068 2.089980 CAATGAAGCAGAGTGGGGAAG 58.910 52.381 0.00 0.00 0.00 3.46
3979 5075 3.216800 TGCAGAAACAATGAAGCAGAGT 58.783 40.909 0.00 0.00 0.00 3.24
4094 5190 4.965814 ACATGTGAGCAAAGAGAAGAGAA 58.034 39.130 0.00 0.00 0.00 2.87
4098 5194 5.334414 GGTGTTACATGTGAGCAAAGAGAAG 60.334 44.000 9.11 0.00 0.00 2.85
4113 5209 7.444487 GGAAGAAAACTTAGTCAGGTGTTACAT 59.556 37.037 0.00 0.00 0.00 2.29
4117 5213 5.751586 TGGAAGAAAACTTAGTCAGGTGTT 58.248 37.500 0.00 0.00 0.00 3.32
4120 5216 5.941788 ACATGGAAGAAAACTTAGTCAGGT 58.058 37.500 0.00 0.00 0.00 4.00
4121 5217 6.486657 TGAACATGGAAGAAAACTTAGTCAGG 59.513 38.462 0.00 0.00 0.00 3.86
4128 5224 4.520492 AGCGATGAACATGGAAGAAAACTT 59.480 37.500 0.00 0.00 0.00 2.66
4130 5226 4.406943 GAGCGATGAACATGGAAGAAAAC 58.593 43.478 0.00 0.00 0.00 2.43
4131 5227 3.440173 GGAGCGATGAACATGGAAGAAAA 59.560 43.478 0.00 0.00 0.00 2.29
4135 5231 1.303309 GGGAGCGATGAACATGGAAG 58.697 55.000 0.00 0.00 0.00 3.46
4136 5232 0.617935 TGGGAGCGATGAACATGGAA 59.382 50.000 0.00 0.00 0.00 3.53
4138 5234 0.392863 TGTGGGAGCGATGAACATGG 60.393 55.000 0.00 0.00 0.00 3.66
4143 5249 2.488204 TTGATTGTGGGAGCGATGAA 57.512 45.000 0.00 0.00 0.00 2.57
4146 5252 3.355378 TCAAATTGATTGTGGGAGCGAT 58.645 40.909 0.00 0.00 40.11 4.58
4267 5386 4.299586 TCAGAATTTCAGCACCCATACA 57.700 40.909 0.00 0.00 0.00 2.29
4268 5387 5.841957 ATTCAGAATTTCAGCACCCATAC 57.158 39.130 0.00 0.00 0.00 2.39
4275 5394 8.049117 AGTATCAGGTTATTCAGAATTTCAGCA 58.951 33.333 0.00 0.00 0.00 4.41
4276 5395 8.443953 AGTATCAGGTTATTCAGAATTTCAGC 57.556 34.615 0.00 0.00 0.00 4.26
4332 5451 2.776765 CGACGTACTTCTGCTTGTATCG 59.223 50.000 0.00 0.00 0.00 2.92
4556 5678 0.251209 GTCGGGCCCTTCCTTTCTTT 60.251 55.000 22.43 0.00 34.39 2.52
4599 5722 0.691332 GGAAAGGGAACGGGAAGACT 59.309 55.000 0.00 0.00 0.00 3.24
4666 5789 4.727734 GCGAATGTGATTGTGTCATGTACC 60.728 45.833 0.00 0.00 39.48 3.34
4817 5940 1.543871 GGGCCAAGTTTAGGAACACGA 60.544 52.381 4.39 0.00 38.26 4.35
4831 5954 4.641645 CAGCACCAGACGGGCCAA 62.642 66.667 4.39 0.00 42.05 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.