AutoCloner

Multiple sequence alignment - TraesCS3A01G463100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G463100	chr3A	100.000	3230	0	0	1	3230	697672478	697675707	0.000000e+00	5965.0
1	TraesCS3A01G463100	chr3A	85.666	1486	139	24	1193	2647	697617717	697619159	0.000000e+00	1496.0
2	TraesCS3A01G463100	chr3A	80.395	1367	201	41	946	2294	697679894	697681211	0.000000e+00	977.0
3	TraesCS3A01G463100	chr3A	77.793	1441	200	73	994	2377	697438033	697436656	0.000000e+00	778.0
4	TraesCS3A01G463100	chr3A	78.689	427	47	13	2732	3129	697619318	697619729	8.950000e-61	244.0
5	TraesCS3A01G463100	chr3A	96.296	54	2	0	3168	3221	697685443	697685496	4.440000e-14	89.8
6	TraesCS3A01G463100	chr3D	94.544	2346	81	12	654	2978	562537922	562540241	0.000000e+00	3579.0
7	TraesCS3A01G463100	chr3D	85.735	2033	202	51	994	2980	562504181	562506171	0.000000e+00	2067.0
8	TraesCS3A01G463100	chr3D	81.172	1365	199	34	946	2294	562545102	562546424	0.000000e+00	1044.0
9	TraesCS3A01G463100	chr3D	94.308	650	35	2	1	648	562533464	562534113	0.000000e+00	994.0
10	TraesCS3A01G463100	chr3D	78.752	1426	222	46	994	2377	561462582	561461196	0.000000e+00	880.0
11	TraesCS3A01G463100	chr3D	77.385	1415	241	52	994	2372	561456405	561455034	0.000000e+00	767.0
12	TraesCS3A01G463100	chr3D	94.466	253	14	0	2978	3230	562540271	562540523	1.090000e-104	390.0
13	TraesCS3A01G463100	chr3D	89.247	93	10	0	3135	3227	562509538	562509630	2.040000e-22	117.0
14	TraesCS3A01G463100	chr3D	88.172	93	10	1	3135	3227	562512005	562512096	3.410000e-20	110.0
15	TraesCS3A01G463100	chr3B	93.133	1733	79	13	843	2545	749859757	749861479	0.000000e+00	2505.0
16	TraesCS3A01G463100	chr3B	85.203	2041	218	44	947	2940	749725723	749727726	0.000000e+00	2019.0
17	TraesCS3A01G463100	chr3B	81.533	1370	199	33	946	2294	749979286	749980622	0.000000e+00	1079.0
18	TraesCS3A01G463100	chr3B	77.958	1420	227	52	994	2377	748779499	748778130	0.000000e+00	809.0
19	TraesCS3A01G463100	chr3B	78.475	1259	191	46	1000	2212	748787183	748785959	0.000000e+00	750.0
20	TraesCS3A01G463100	chr3B	88.728	346	25	9	2638	2980	749861494	749861828	8.340000e-111	411.0
21	TraesCS3A01G463100	chr3B	93.574	249	15	1	2982	3230	749861862	749862109	1.420000e-98	370.0
22	TraesCS3A01G463100	chr3B	91.667	60	3	2	3168	3227	749863492	749863549	7.430000e-12	82.4
23	TraesCS3A01G463100	chr7B	79.882	169	15	10	591	747	747306780	747306941	4.410000e-19	106.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G463100	chr3A	697672478	697675707	3229	False	5965.000000	5965	100.000000	1	3230	1	chr3A.!!$F1	3229
1	TraesCS3A01G463100	chr3A	697679894	697681211	1317	False	977.000000	977	80.395000	946	2294	1	chr3A.!!$F2	1348
2	TraesCS3A01G463100	chr3A	697617717	697619729	2012	False	870.000000	1496	82.177500	1193	3129	2	chr3A.!!$F4	1936
3	TraesCS3A01G463100	chr3A	697436656	697438033	1377	True	778.000000	778	77.793000	994	2377	1	chr3A.!!$R1	1383
4	TraesCS3A01G463100	chr3D	562533464	562540523	7059	False	1654.333333	3579	94.439333	1	3230	3	chr3D.!!$F3	3229
5	TraesCS3A01G463100	chr3D	562545102	562546424	1322	False	1044.000000	1044	81.172000	946	2294	1	chr3D.!!$F1	1348
6	TraesCS3A01G463100	chr3D	561461196	561462582	1386	True	880.000000	880	78.752000	994	2377	1	chr3D.!!$R2	1383
7	TraesCS3A01G463100	chr3D	561455034	561456405	1371	True	767.000000	767	77.385000	994	2372	1	chr3D.!!$R1	1378
8	TraesCS3A01G463100	chr3D	562504181	562512096	7915	False	764.666667	2067	87.718000	994	3227	3	chr3D.!!$F2	2233
9	TraesCS3A01G463100	chr3B	749725723	749727726	2003	False	2019.000000	2019	85.203000	947	2940	1	chr3B.!!$F1	1993
10	TraesCS3A01G463100	chr3B	749979286	749980622	1336	False	1079.000000	1079	81.533000	946	2294	1	chr3B.!!$F2	1348
11	TraesCS3A01G463100	chr3B	749859757	749863549	3792	False	842.100000	2505	91.775500	843	3230	4	chr3B.!!$F3	2387
12	TraesCS3A01G463100	chr3B	748778130	748779499	1369	True	809.000000	809	77.958000	994	2377	1	chr3B.!!$R1	1383
13	TraesCS3A01G463100	chr3B	748785959	748787183	1224	True	750.000000	750	78.475000	1000	2212	1	chr3B.!!$R2	1212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
299	300	0.614979	TGCTTCCTACGCCTTCCTCT	60.615	55.0	0.0	0.0	0.0	3.69	F
702	4508	0.835276	GGGGCGTGTATCCTTTACCT	59.165	55.0	0.0	0.0	0.0	3.08	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2064	5964	5.526846	GCTCCTCAGATGAACATAAAAGAGG	59.473	44.0	0.0	0.0	42.06	3.69	R
2516	6448	0.236711	CTTCCAGTTGCTGCTTGTCG	59.763	55.0	0.0	0.0	0.00	4.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	63	0.885879	GTTTGGTTTCACGGGATCCC	59.114	55.000	22.12	22.12	0.00	3.85
66	67	1.610554	GGTTTCACGGGATCCCTCGA	61.611	60.000	28.42	20.50	0.00	4.04
89	90	0.841289	TCCTCGTCAAAAACCAGGGT	59.159	50.000	0.00	0.00	36.92	4.34
129	130	2.745037	GCCCGTGTAAGACCACCA	59.255	61.111	0.00	0.00	31.47	4.17
130	131	1.375523	GCCCGTGTAAGACCACCAG	60.376	63.158	0.00	0.00	31.47	4.00
151	152	1.470996	GCATTTGGTTGCCCACTGGA	61.471	55.000	0.00	0.00	41.67	3.86
167	168	3.002042	CACTGGAATTCTGCATCACGATC	59.998	47.826	5.23	0.00	0.00	3.69
184	185	1.868498	GATCCACGTTGTTTTCACGGA	59.132	47.619	0.00	0.00	0.00	4.69
196	197	4.160626	TGTTTTCACGGAAAGGTTTTCCAT	59.839	37.500	17.89	2.70	43.73	3.41
201	202	3.058224	CACGGAAAGGTTTTCCATGTCTC	60.058	47.826	17.89	0.00	43.73	3.36
299	300	0.614979	TGCTTCCTACGCCTTCCTCT	60.615	55.000	0.00	0.00	0.00	3.69
308	309	3.052181	GCCTTCCTCTAGCGACAAC	57.948	57.895	0.00	0.00	0.00	3.32
331	332	1.003839	TGTTGTGGCCGTCATCCTC	60.004	57.895	0.00	0.00	0.00	3.71
339	340	2.058595	CCGTCATCCTCCCCGTTCT	61.059	63.158	0.00	0.00	0.00	3.01
361	363	2.481854	CCAAGATTCGATCAGCCTCAG	58.518	52.381	0.00	0.00	0.00	3.35
382	384	1.191489	TCTCATGTCCCGTCCAGCAA	61.191	55.000	0.00	0.00	0.00	3.91
436	438	2.023532	CCTCTCCTCCTCCCTCCTT	58.976	63.158	0.00	0.00	0.00	3.36
442	444	1.394151	CTCCTCCCTCCTTCCCTGT	59.606	63.158	0.00	0.00	0.00	4.00
462	464	4.331108	TGTGTCCAAATAGCAACATAGCA	58.669	39.130	0.00	0.00	36.85	3.49
491	494	3.670625	TGGTTTTACAAGGATCTCACGG	58.329	45.455	0.00	0.00	0.00	4.94
492	495	3.325425	TGGTTTTACAAGGATCTCACGGA	59.675	43.478	0.00	0.00	0.00	4.69
537	540	2.301583	GTTTATTGCCCAGCCTTTTCCA	59.698	45.455	0.00	0.00	0.00	3.53
577	580	7.865706	TGAGCCTTTAATCTCCATTAGAAAC	57.134	36.000	0.00	0.00	37.89	2.78
580	583	7.406104	AGCCTTTAATCTCCATTAGAAACTGT	58.594	34.615	0.00	0.00	37.89	3.55
587	590	8.723942	AATCTCCATTAGAAACTGTCACATAC	57.276	34.615	0.00	0.00	37.89	2.39
610	613	1.353103	GCCGCGATTGGATTGAGTG	59.647	57.895	8.23	0.00	0.00	3.51
702	4508	0.835276	GGGGCGTGTATCCTTTACCT	59.165	55.000	0.00	0.00	0.00	3.08
703	4509	1.211212	GGGGCGTGTATCCTTTACCTT	59.789	52.381	0.00	0.00	0.00	3.50
704	4510	2.356432	GGGGCGTGTATCCTTTACCTTT	60.356	50.000	0.00	0.00	0.00	3.11
705	4511	3.118298	GGGGCGTGTATCCTTTACCTTTA	60.118	47.826	0.00	0.00	0.00	1.85
706	4512	3.873361	GGGCGTGTATCCTTTACCTTTAC	59.127	47.826	0.00	0.00	0.00	2.01
707	4513	4.383444	GGGCGTGTATCCTTTACCTTTACT	60.383	45.833	0.00	0.00	0.00	2.24
708	4514	4.569564	GGCGTGTATCCTTTACCTTTACTG	59.430	45.833	0.00	0.00	0.00	2.74
709	4515	5.413499	GCGTGTATCCTTTACCTTTACTGA	58.587	41.667	0.00	0.00	0.00	3.41
743	4549	1.151777	ACACGATAATCCAAGCGCGG	61.152	55.000	8.83	0.00	0.00	6.46
775	4581	4.260497	GCGTAGAAACCGTAAAATGGGATC	60.260	45.833	0.00	0.00	0.00	3.36
805	4611	7.898152	GCTGTAGCATTACTTGGAGGAAATCC	61.898	46.154	0.00	0.00	44.26	3.01
818	4624	2.989571	AGGAAATCCCTTGAGACCTTGT	59.010	45.455	0.00	0.00	44.85	3.16
820	4626	3.759086	GGAAATCCCTTGAGACCTTGTTC	59.241	47.826	0.00	0.00	0.00	3.18
879	4685	1.202592	TGGCAGTTCTCGTGCTAACAA	60.203	47.619	0.00	0.00	40.97	2.83
911	4721	6.735130	ACAGTTTTGACTAGTGGTATTTTGC	58.265	36.000	0.00	0.00	0.00	3.68
912	4722	6.546034	ACAGTTTTGACTAGTGGTATTTTGCT	59.454	34.615	0.00	0.00	0.00	3.91
913	4723	7.717875	ACAGTTTTGACTAGTGGTATTTTGCTA	59.282	33.333	0.00	0.00	0.00	3.49
943	4756	0.872021	GTATTCTGCTCGCTCCCACG	60.872	60.000	0.00	0.00	0.00	4.94
944	4757	2.016393	TATTCTGCTCGCTCCCACGG	62.016	60.000	0.00	0.00	0.00	4.94
992	4820	2.614134	ATTCCCCAAATTTGTCCGGA	57.386	45.000	16.73	14.33	0.00	5.14
2108	6008	1.059913	AGGGTGGTTGAGAAGGTCTG	58.940	55.000	0.00	0.00	0.00	3.51
2147	6047	5.735766	TGAATGTGGATATAAACGTGTGGA	58.264	37.500	0.00	0.00	0.00	4.02
2329	6239	6.458232	TTCTCTTCCTAGAACAGCAGATAC	57.542	41.667	0.00	0.00	30.54	2.24
2516	6448	8.160521	ACTTTAAATGGTGGCCAAATAAAAAC	57.839	30.769	7.24	0.00	36.95	2.43
2592	6524	3.414549	TTCTTTTGTGTTCTCGGCAAC	57.585	42.857	0.00	0.00	0.00	4.17
2670	6608	9.736023	ATTCACATTAAAACTGACTTCTGTTTC	57.264	29.630	12.86	0.00	43.85	2.78
2672	6610	7.338196	TCACATTAAAACTGACTTCTGTTTCCA	59.662	33.333	12.86	5.44	43.85	3.53
2673	6611	8.137437	CACATTAAAACTGACTTCTGTTTCCAT	58.863	33.333	12.86	7.05	43.85	3.41
2674	6612	8.695456	ACATTAAAACTGACTTCTGTTTCCATT	58.305	29.630	12.86	3.01	43.85	3.16
2675	6613	9.533253	CATTAAAACTGACTTCTGTTTCCATTT	57.467	29.630	12.86	2.72	43.85	2.32
2708	6646	7.265673	TGTCTACAAAGCTATAATCCACTCAC	58.734	38.462	0.00	0.00	0.00	3.51
2821	6862	4.998051	ACTCCACAACAATGGTATTCCTT	58.002	39.130	0.00	0.00	40.95	3.36
2825	6866	6.307776	TCCACAACAATGGTATTCCTTGTTA	58.692	36.000	14.14	2.74	40.01	2.41
2826	6867	6.207810	TCCACAACAATGGTATTCCTTGTTAC	59.792	38.462	14.14	0.00	40.01	2.50
2890	6931	1.677217	CCTAGCTTGTCAGGAACCTGC	60.677	57.143	15.20	11.04	43.31	4.85
2898	6939	2.106338	TGTCAGGAACCTGCTGAATCAA	59.894	45.455	15.20	0.00	46.30	2.57
2899	6940	3.245016	TGTCAGGAACCTGCTGAATCAAT	60.245	43.478	15.20	0.00	46.30	2.57
2904	6945	6.070251	TCAGGAACCTGCTGAATCAATAACTA	60.070	38.462	15.20	0.00	41.94	2.24
2974	7015	8.743714	GGTACTACTAACTAAAGTTCAGCCTAA	58.256	37.037	0.00	0.00	39.31	2.69
2994	7072	6.094048	GCCTAACTGAAGCATCATTACAAGAA	59.906	38.462	0.00	0.00	34.37	2.52
3046	7126	6.488006	CCATAGCTAACTGTATGATTTTGCCT	59.512	38.462	0.00	0.00	0.00	4.75
3081	7161	5.355596	CAAAGATTACAGGAGGTGCTAGAG	58.644	45.833	0.00	0.00	0.00	2.43
3099	7179	7.223777	GTGCTAGAGTTCATTAGATGGAGTTTC	59.776	40.741	0.00	0.00	0.00	2.78
3140	10399	5.166398	GCATCCAGAAAAGGAAAATGTGAG	58.834	41.667	0.00	0.00	41.92	3.51
3199	10458	2.200067	TCACGCACAAATGGCAAAAAG	58.800	42.857	0.00	0.00	0.00	2.27

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
66	67	3.059352	CTGGTTTTTGACGAGGATCCT	57.941	47.619	16.13	16.13	31.12	3.24
75	76	1.681264	CTGGACACCCTGGTTTTTGAC	59.319	52.381	0.00	0.00	0.00	3.18
111	112	2.046604	GGTGGTCTTACACGGGCC	60.047	66.667	0.00	0.00	42.23	5.80
116	117	2.770164	ATGCTCTGGTGGTCTTACAC	57.230	50.000	0.00	0.00	40.60	2.90
151	152	1.935873	CGTGGATCGTGATGCAGAATT	59.064	47.619	4.16	0.00	39.83	2.17
167	168	2.446282	CTTTCCGTGAAAACAACGTGG	58.554	47.619	0.00	0.00	39.38	4.94
173	174	3.510360	TGGAAAACCTTTCCGTGAAAACA	59.490	39.130	12.34	0.00	41.43	2.83
184	185	3.412386	CCTCGAGACATGGAAAACCTTT	58.588	45.455	15.71	0.00	0.00	3.11
196	197	2.606519	CCCCAACCCCTCGAGACA	60.607	66.667	15.71	0.00	0.00	3.41
201	202	2.198304	CTTTCCTCCCCAACCCCTCG	62.198	65.000	0.00	0.00	0.00	4.63
308	309	2.358737	GACGGCCACAACAGAGGG	60.359	66.667	2.24	0.00	0.00	4.30
322	323	1.437986	GAGAACGGGGAGGATGACG	59.562	63.158	0.00	0.00	0.00	4.35
331	332	0.462047	CGAATCTTGGGAGAACGGGG	60.462	60.000	0.00	0.00	35.07	5.73
339	340	1.414181	GAGGCTGATCGAATCTTGGGA	59.586	52.381	0.00	0.00	0.00	4.37
361	363	0.249657	GCTGGACGGGACATGAGATC	60.250	60.000	0.00	0.00	0.00	2.75
436	438	2.107378	TGTTGCTATTTGGACACAGGGA	59.893	45.455	0.00	0.00	0.00	4.20
442	444	6.528537	AAATGCTATGTTGCTATTTGGACA	57.471	33.333	0.00	0.00	0.00	4.02
462	464	7.454380	TGAGATCCTTGTAAAACCATGGAAAAT	59.546	33.333	21.47	3.99	40.72	1.82
537	540	2.299867	GGCTCATTTGGTTGTTGTGGAT	59.700	45.455	0.00	0.00	0.00	3.41
577	580	1.369091	GCGGCCTTGGTATGTGACAG	61.369	60.000	0.00	0.00	0.00	3.51
580	583	1.966901	ATCGCGGCCTTGGTATGTGA	61.967	55.000	6.13	0.00	0.00	3.58
587	590	2.120909	AATCCAATCGCGGCCTTGG	61.121	57.895	22.13	22.13	42.72	3.61
648	651	0.614294	TTCCGGCCGAAAATCTGGTA	59.386	50.000	30.73	0.00	0.00	3.25
649	652	0.250989	TTTCCGGCCGAAAATCTGGT	60.251	50.000	30.73	0.00	37.53	4.00
650	653	0.170339	GTTTCCGGCCGAAAATCTGG	59.830	55.000	30.73	7.15	42.11	3.86
651	654	0.878416	TGTTTCCGGCCGAAAATCTG	59.122	50.000	30.73	8.04	42.11	2.90
652	655	1.611519	TTGTTTCCGGCCGAAAATCT	58.388	45.000	30.73	0.00	42.11	2.40
654	657	3.759618	TCTTATTGTTTCCGGCCGAAAAT	59.240	39.130	30.73	16.32	42.11	1.82
655	658	3.058085	GTCTTATTGTTTCCGGCCGAAAA	60.058	43.478	30.73	18.67	42.11	2.29
656	659	2.485038	GTCTTATTGTTTCCGGCCGAAA	59.515	45.455	30.73	21.50	38.16	3.46
657	660	2.078392	GTCTTATTGTTTCCGGCCGAA	58.922	47.619	30.73	16.49	0.00	4.30
658	661	1.729284	GTCTTATTGTTTCCGGCCGA	58.271	50.000	30.73	10.38	0.00	5.54
703	4509	9.917129	TCGTGTTTTCTTTAGATACATCAGTAA	57.083	29.630	0.00	0.00	33.13	2.24
721	4527	2.475519	CGCGCTTGGATTATCGTGTTTT	60.476	45.455	5.56	0.00	0.00	2.43
743	4549	2.417586	ACGGTTTCTACGCAATTTAGGC	59.582	45.455	0.00	0.00	34.00	3.93
805	4611	4.640201	TGAAACAAGAACAAGGTCTCAAGG	59.360	41.667	0.00	0.00	0.00	3.61
812	4618	6.590234	AAAAGAGTGAAACAAGAACAAGGT	57.410	33.333	0.00	0.00	41.43	3.50
888	4698	6.970484	AGCAAAATACCACTAGTCAAAACTG	58.030	36.000	0.00	0.00	36.92	3.16
911	4721	1.607628	CAGAATACGACGGGGGAGTAG	59.392	57.143	0.00	0.00	0.00	2.57
912	4722	1.683943	CAGAATACGACGGGGGAGTA	58.316	55.000	0.00	0.00	0.00	2.59
913	4723	1.673808	GCAGAATACGACGGGGGAGT	61.674	60.000	0.00	0.00	0.00	3.85
943	4756	4.355720	GGGGGTTTCGGTGGGACC	62.356	72.222	0.00	0.00	34.05	4.46
944	4757	3.254617	AGGGGGTTTCGGTGGGAC	61.255	66.667	0.00	0.00	0.00	4.46
992	4820	3.118775	TCGATCTCCGTCCATGATTTTGT	60.119	43.478	0.00	0.00	39.75	2.83
2064	5964	5.526846	GCTCCTCAGATGAACATAAAAGAGG	59.473	44.000	0.00	0.00	42.06	3.69
2240	6146	8.906636	TCAGTTTAGATAGTACAACGATCAAC	57.093	34.615	0.00	0.98	33.44	3.18
2329	6239	2.744202	GACCCAACTTACATGACTGCAG	59.256	50.000	13.48	13.48	0.00	4.41
2516	6448	0.236711	CTTCCAGTTGCTGCTTGTCG	59.763	55.000	0.00	0.00	0.00	4.35
2592	6524	0.813184	TCTTACCGTCTAAGCCACCG	59.187	55.000	0.00	0.00	0.00	4.94
2680	6618	9.982651	GAGTGGATTATAGCTTTGTAGACATAA	57.017	33.333	0.00	0.00	0.00	1.90
2687	6625	6.553953	TGGTGAGTGGATTATAGCTTTGTA	57.446	37.500	0.00	0.00	0.00	2.41
2705	6643	2.899900	AGCAGTGAACTAGTGATGGTGA	59.100	45.455	0.00	0.00	30.94	4.02
2708	6646	5.268118	TCATAGCAGTGAACTAGTGATGG	57.732	43.478	0.00	0.00	29.67	3.51
2789	6830	2.796557	TGTTGTGGAGTTTGTGGACAA	58.203	42.857	0.00	0.00	0.00	3.18
2825	6866	0.174389	TTTGCCATTTGTGCGTGTGT	59.826	45.000	0.00	0.00	0.00	3.72
2826	6867	1.284657	TTTTGCCATTTGTGCGTGTG	58.715	45.000	0.00	0.00	0.00	3.82
2904	6945	8.538701	TGGTGGTATTAATCAAATCAATGCTTT	58.461	29.630	0.00	0.00	0.00	3.51
2974	7015	9.399797	TCATATTTCTTGTAATGATGCTTCAGT	57.600	29.630	8.40	8.05	34.73	3.41
2994	7072	4.446889	GGACCCTGGCTGATCTTTCATATT	60.447	45.833	0.00	0.00	0.00	1.28
2999	7079	0.915364	AGGACCCTGGCTGATCTTTC	59.085	55.000	0.00	0.00	0.00	2.62
3046	7126	4.735369	TGTAATCTTTGCTTTTGGGAGGA	58.265	39.130	0.00	0.00	0.00	3.71
3081	7161	6.122277	TGGGATGAAACTCCATCTAATGAAC	58.878	40.000	0.00	0.00	41.88	3.18
3099	7179	1.134759	TGCCATTGCGAATTTGGGATG	60.135	47.619	0.00	0.00	41.78	3.51
3140	10399	1.098050	GGAGTTGTGGACATGATGCC	58.902	55.000	0.00	0.00	0.00	4.40
3199	10458	9.397280	AGGTTTAGATAAACTCTAATTCCTTGC	57.603	33.333	13.56	0.00	44.12	4.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.