Multiple sequence alignment - TraesCS3A01G461700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G461700 chr3A 100.000 4976 0 0 1 4976 697392451 697387476 0.000000e+00 9190.0
1 TraesCS3A01G461700 chr3A 77.147 1479 254 53 968 2391 697438062 697436613 0.000000e+00 782.0
2 TraesCS3A01G461700 chr3A 77.688 1358 222 48 996 2307 697673472 697674794 0.000000e+00 754.0
3 TraesCS3A01G461700 chr3A 77.786 1274 243 30 1026 2283 697679961 697681210 0.000000e+00 749.0
4 TraesCS3A01G461700 chr3A 78.093 1269 213 43 1031 2252 697457440 697456190 0.000000e+00 743.0
5 TraesCS3A01G461700 chr3A 75.875 1028 197 36 1190 2187 697617717 697618723 1.250000e-130 477.0
6 TraesCS3A01G461700 chr3A 78.388 273 42 14 2830 3094 91027055 91027318 1.430000e-35 161.0
7 TraesCS3A01G461700 chr3A 94.118 102 4 2 2604 2705 466718454 466718553 2.400000e-33 154.0
8 TraesCS3A01G461700 chr3A 94.000 100 6 0 2607 2706 701670947 701671046 8.630000e-33 152.0
9 TraesCS3A01G461700 chr3B 92.784 2647 152 15 4 2620 748780498 748777861 0.000000e+00 3794.0
10 TraesCS3A01G461700 chr3B 94.235 850 40 4 3633 4477 748776878 748776033 0.000000e+00 1290.0
11 TraesCS3A01G461700 chr3B 95.353 581 19 1 2963 3535 748777754 748777174 0.000000e+00 917.0
12 TraesCS3A01G461700 chr3B 77.632 1444 253 45 993 2391 749725768 749727186 0.000000e+00 813.0
13 TraesCS3A01G461700 chr3B 78.683 1276 231 30 1023 2283 749979372 749980621 0.000000e+00 811.0
14 TraesCS3A01G461700 chr3B 77.683 1286 234 35 1023 2271 749025786 749024517 0.000000e+00 736.0
15 TraesCS3A01G461700 chr3B 77.055 1338 238 42 1023 2322 749859950 749861256 0.000000e+00 706.0
16 TraesCS3A01G461700 chr3B 87.347 490 46 12 4498 4975 748775954 748775469 9.420000e-152 547.0
17 TraesCS3A01G461700 chr3B 88.710 310 24 6 4136 4443 748626195 748625895 7.870000e-98 368.0
18 TraesCS3A01G461700 chr3B 94.595 111 5 1 2702 2811 748777862 748777752 2.380000e-38 171.0
19 TraesCS3A01G461700 chr3B 95.283 106 5 0 3532 3637 748777094 748776989 8.570000e-38 169.0
20 TraesCS3A01G461700 chr3B 78.623 276 39 15 2830 3094 123475423 123475689 1.110000e-36 165.0
21 TraesCS3A01G461700 chr3B 89.474 114 8 4 2593 2703 469635018 469635130 1.870000e-29 141.0
22 TraesCS3A01G461700 chr3B 88.764 89 9 1 3969 4057 748628169 748628082 1.890000e-19 108.0
23 TraesCS3A01G461700 chr3D 91.425 2344 99 38 2702 4974 561454754 561452442 0.000000e+00 3121.0
24 TraesCS3A01G461700 chr3D 93.806 1792 86 12 846 2613 561456554 561454764 0.000000e+00 2671.0
25 TraesCS3A01G461700 chr3D 81.548 1111 186 13 1001 2098 562348087 562349191 0.000000e+00 898.0
26 TraesCS3A01G461700 chr3D 77.746 1393 238 46 969 2322 562504158 562505517 0.000000e+00 789.0
27 TraesCS3A01G461700 chr3D 77.273 1320 229 49 996 2271 561711662 561710370 0.000000e+00 710.0
28 TraesCS3A01G461700 chr3D 80.379 897 143 21 993 1883 562433181 562434050 0.000000e+00 651.0
29 TraesCS3A01G461700 chr3D 75.817 459 98 13 317 769 96121434 96121885 2.330000e-53 220.0
30 TraesCS3A01G461700 chr5B 96.774 93 3 0 2612 2704 544620346 544620254 6.670000e-34 156.0
31 TraesCS3A01G461700 chr1D 97.778 90 2 0 2618 2707 38912300 38912211 6.670000e-34 156.0
32 TraesCS3A01G461700 chr5D 95.789 95 4 0 2609 2703 420877343 420877437 2.400000e-33 154.0
33 TraesCS3A01G461700 chr7D 94.845 97 4 1 2612 2707 2524422 2524326 3.100000e-32 150.0
34 TraesCS3A01G461700 chr7D 93.939 99 4 2 2612 2708 311872942 311872844 1.120000e-31 148.0
35 TraesCS3A01G461700 chr7D 88.312 77 5 4 3174 3248 4999688 4999762 6.860000e-14 89.8
36 TraesCS3A01G461700 chr1B 94.845 97 4 1 2615 2710 121004954 121004858 3.100000e-32 150.0
37 TraesCS3A01G461700 chr4A 80.412 97 17 1 4879 4975 715644096 715644190 6.910000e-09 73.1
38 TraesCS3A01G461700 chr2A 93.182 44 3 0 4896 4939 722492810 722492853 1.160000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G461700 chr3A 697387476 697392451 4975 True 9190 9190 100.000000 1 4976 1 chr3A.!!$R1 4975
1 TraesCS3A01G461700 chr3A 697436613 697438062 1449 True 782 782 77.147000 968 2391 1 chr3A.!!$R2 1423
2 TraesCS3A01G461700 chr3A 697673472 697674794 1322 False 754 754 77.688000 996 2307 1 chr3A.!!$F4 1311
3 TraesCS3A01G461700 chr3A 697679961 697681210 1249 False 749 749 77.786000 1026 2283 1 chr3A.!!$F5 1257
4 TraesCS3A01G461700 chr3A 697456190 697457440 1250 True 743 743 78.093000 1031 2252 1 chr3A.!!$R3 1221
5 TraesCS3A01G461700 chr3A 697617717 697618723 1006 False 477 477 75.875000 1190 2187 1 chr3A.!!$F3 997
6 TraesCS3A01G461700 chr3B 748775469 748780498 5029 True 1148 3794 93.266167 4 4975 6 chr3B.!!$R3 4971
7 TraesCS3A01G461700 chr3B 749725768 749727186 1418 False 813 813 77.632000 993 2391 1 chr3B.!!$F3 1398
8 TraesCS3A01G461700 chr3B 749979372 749980621 1249 False 811 811 78.683000 1023 2283 1 chr3B.!!$F5 1260
9 TraesCS3A01G461700 chr3B 749024517 749025786 1269 True 736 736 77.683000 1023 2271 1 chr3B.!!$R1 1248
10 TraesCS3A01G461700 chr3B 749859950 749861256 1306 False 706 706 77.055000 1023 2322 1 chr3B.!!$F4 1299
11 TraesCS3A01G461700 chr3B 748625895 748628169 2274 True 238 368 88.737000 3969 4443 2 chr3B.!!$R2 474
12 TraesCS3A01G461700 chr3D 561452442 561456554 4112 True 2896 3121 92.615500 846 4974 2 chr3D.!!$R2 4128
13 TraesCS3A01G461700 chr3D 562348087 562349191 1104 False 898 898 81.548000 1001 2098 1 chr3D.!!$F2 1097
14 TraesCS3A01G461700 chr3D 562504158 562505517 1359 False 789 789 77.746000 969 2322 1 chr3D.!!$F4 1353
15 TraesCS3A01G461700 chr3D 561710370 561711662 1292 True 710 710 77.273000 996 2271 1 chr3D.!!$R1 1275
16 TraesCS3A01G461700 chr3D 562433181 562434050 869 False 651 651 80.379000 993 1883 1 chr3D.!!$F3 890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.107643 TCATTGGTGAGGTGTTGCGA 59.892 50.000 0.00 0.0 0.0 5.10 F
401 412 0.248134 CGTCCTCGATGTCGTTCCTC 60.248 60.000 2.04 0.0 40.8 3.71 F
403 414 0.323087 TCCTCGATGTCGTTCCTCCA 60.323 55.000 2.04 0.0 40.8 3.86 F
663 674 1.070758 GAGCTGGAGTTGGTTGAGACA 59.929 52.381 0.00 0.0 0.0 3.41 F
690 701 1.216678 TGTTGGTCTGGTTGGGACATT 59.783 47.619 0.00 0.0 39.3 2.71 F
907 919 1.302949 GGCAGATGTGGTGGGCTAA 59.697 57.895 0.00 0.0 0.0 3.09 F
1944 2041 2.861935 GGACACGTTTTCTGTTCTCGAA 59.138 45.455 0.00 0.0 0.0 3.71 F
3330 3511 2.361230 GGTAGTGCCCTTGTGCCC 60.361 66.667 0.00 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 1914 0.566176 ATAGATCCCGGAACCCTCCA 59.434 55.000 0.73 0.00 42.58 3.86 R
2072 2190 1.906574 TCTTAACCACCCTGCTACTGG 59.093 52.381 0.00 0.00 0.00 4.00 R
2261 2388 8.128322 AGTGCATACCTTCCTATATTACAGAG 57.872 38.462 0.00 0.00 0.00 3.35 R
2625 2793 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69 R
2688 2856 1.206610 GGAAAGTACTCCCTCCGTTCC 59.793 57.143 0.00 0.00 0.00 3.62 R
2689 2857 1.897802 TGGAAAGTACTCCCTCCGTTC 59.102 52.381 13.46 4.69 34.22 3.95 R
3901 4282 2.533318 GGTCAGCAACTTCAGACCG 58.467 57.895 0.00 0.00 40.89 4.79 R
4446 6681 1.118838 CAAGGGCCACTGGTTTTTGA 58.881 50.000 6.18 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.110486 TCTTGGTGAAGTTGGGCCTC 59.890 55.000 4.53 0.00 0.00 4.70
57 58 4.752457 TGGTGGTCCAGGTGGTAA 57.248 55.556 0.00 0.00 39.03 2.85
71 72 2.039818 TGGTAACGCCAACAACTCAA 57.960 45.000 0.00 0.00 45.94 3.02
98 99 1.404477 GTGTTTGCCATTTTCGACGG 58.596 50.000 0.00 0.00 0.00 4.79
119 120 4.840005 TGTTGGTGGCGCGTGACA 62.840 61.111 8.43 0.00 0.00 3.58
125 126 3.353029 TGGCGCGTGACAATGTGG 61.353 61.111 0.00 0.00 0.00 4.17
142 143 0.478072 TGGCTTCATTGGTGAGGTGT 59.522 50.000 0.00 0.00 35.39 4.16
147 148 0.107643 TCATTGGTGAGGTGTTGCGA 59.892 50.000 0.00 0.00 0.00 5.10
151 152 1.302511 GGTGAGGTGTTGCGATGGT 60.303 57.895 0.00 0.00 0.00 3.55
155 156 2.983030 GGTGTTGCGATGGTGGCA 60.983 61.111 0.00 0.00 38.93 4.92
177 178 1.429021 CGAACCAACATGGATGGCG 59.571 57.895 17.12 11.08 40.96 5.69
182 183 1.597797 CCAACATGGATGGCGTGCTT 61.598 55.000 6.84 0.00 40.96 3.91
187 188 1.135527 CATGGATGGCGTGCTTGATTT 59.864 47.619 8.17 0.00 0.00 2.17
188 189 1.255882 TGGATGGCGTGCTTGATTTT 58.744 45.000 0.00 0.00 0.00 1.82
189 190 1.202114 TGGATGGCGTGCTTGATTTTC 59.798 47.619 0.00 0.00 0.00 2.29
190 191 1.538276 GATGGCGTGCTTGATTTTCG 58.462 50.000 0.00 0.00 0.00 3.46
196 197 0.958822 GTGCTTGATTTTCGGTGGGT 59.041 50.000 0.00 0.00 0.00 4.51
201 202 1.659022 TGATTTTCGGTGGGTAGGGA 58.341 50.000 0.00 0.00 0.00 4.20
228 229 4.151070 TGTGTACGACGATTTAGACGAAC 58.849 43.478 0.00 0.00 33.85 3.95
234 235 3.242091 CGACGATTTAGACGAACGTCCTA 60.242 47.826 20.97 11.48 46.51 2.94
272 273 0.506932 CAACGACGACGATGCTTGTT 59.493 50.000 15.32 0.00 42.66 2.83
288 289 1.338890 TGTTGGTGTCGTCCCCTCAA 61.339 55.000 0.00 0.00 0.00 3.02
291 292 2.567497 GGTGTCGTCCCCTCAACGA 61.567 63.158 0.00 0.00 46.08 3.85
295 296 1.532316 TCGTCCCCTCAACGAAGGT 60.532 57.895 0.00 0.00 45.36 3.50
358 369 1.375523 CCGCGTGAAAGCCTAGGTT 60.376 57.895 11.31 0.00 0.00 3.50
359 370 0.953960 CCGCGTGAAAGCCTAGGTTT 60.954 55.000 11.31 8.04 35.90 3.27
370 381 6.879458 TGAAAGCCTAGGTTTAGTTTCAGATC 59.121 38.462 11.70 2.91 31.88 2.75
401 412 0.248134 CGTCCTCGATGTCGTTCCTC 60.248 60.000 2.04 0.00 40.80 3.71
403 414 0.323087 TCCTCGATGTCGTTCCTCCA 60.323 55.000 2.04 0.00 40.80 3.86
425 436 6.012113 CCATTGGGAGCATTATTTATGGAGA 58.988 40.000 0.00 0.00 34.58 3.71
462 473 2.460757 ATGTTGCATTCCTTTGGTGC 57.539 45.000 0.00 0.00 39.26 5.01
471 482 2.336088 CTTTGGTGCCTGCCGTTG 59.664 61.111 0.00 0.00 0.00 4.10
499 510 1.078143 GCTTGTGAGGGGTGCTAGG 60.078 63.158 0.00 0.00 0.00 3.02
553 564 1.752683 TCTCGGAGCTGTCTTAGTCC 58.247 55.000 0.00 0.00 0.00 3.85
580 591 2.038033 CCCACCCGTCAACTCTTTTAGA 59.962 50.000 0.00 0.00 0.00 2.10
587 598 5.120830 CCCGTCAACTCTTTTAGACAATCAG 59.879 44.000 0.00 0.00 0.00 2.90
596 607 3.433306 TTAGACAATCAGGGTGGTTGG 57.567 47.619 4.99 0.00 42.54 3.77
603 614 4.619227 AGGGTGGTTGGTGCGTCG 62.619 66.667 0.00 0.00 0.00 5.12
628 639 6.872547 GGAAAGGATAGTTCGTTTAGAGTTGT 59.127 38.462 0.00 0.00 39.40 3.32
630 641 7.653767 AAGGATAGTTCGTTTAGAGTTGTTG 57.346 36.000 0.00 0.00 0.00 3.33
663 674 1.070758 GAGCTGGAGTTGGTTGAGACA 59.929 52.381 0.00 0.00 0.00 3.41
665 676 1.475034 GCTGGAGTTGGTTGAGACACA 60.475 52.381 0.00 0.00 0.00 3.72
667 678 3.480470 CTGGAGTTGGTTGAGACACATT 58.520 45.455 0.00 0.00 0.00 2.71
680 691 4.097741 TGAGACACATTTTTGTTGGTCTGG 59.902 41.667 0.00 0.00 35.88 3.86
690 701 1.216678 TGTTGGTCTGGTTGGGACATT 59.783 47.619 0.00 0.00 39.30 2.71
700 711 2.562298 GGTTGGGACATTCTTTGATGCA 59.438 45.455 0.00 0.00 39.30 3.96
703 714 4.459390 TGGGACATTCTTTGATGCATTG 57.541 40.909 0.00 0.00 0.00 2.82
715 726 7.092079 TCTTTGATGCATTGGAGTTGTATTTG 58.908 34.615 0.00 0.00 0.00 2.32
725 736 5.126779 TGGAGTTGTATTTGTGTGTGCTTA 58.873 37.500 0.00 0.00 0.00 3.09
786 797 1.590591 TGCCTGAACCCTATGCCTTA 58.409 50.000 0.00 0.00 0.00 2.69
790 801 3.767131 GCCTGAACCCTATGCCTTAAAAA 59.233 43.478 0.00 0.00 0.00 1.94
886 898 3.043418 TCTGCCATCAGATCTGGATTGA 58.957 45.455 22.42 10.55 43.95 2.57
907 919 1.302949 GGCAGATGTGGTGGGCTAA 59.697 57.895 0.00 0.00 0.00 3.09
1141 1168 4.148825 CCGCCCTCGTCTCCAAGG 62.149 72.222 0.00 0.00 0.00 3.61
1817 1914 4.142609 ACAATTACATGCTCTCATCCGT 57.857 40.909 0.00 0.00 0.00 4.69
1944 2041 2.861935 GGACACGTTTTCTGTTCTCGAA 59.138 45.455 0.00 0.00 0.00 3.71
2070 2188 6.811253 AGCGGTGTTATCTTTTATGTTCAA 57.189 33.333 0.00 0.00 0.00 2.69
2072 2190 5.798434 GCGGTGTTATCTTTTATGTTCAACC 59.202 40.000 0.00 0.00 0.00 3.77
2261 2388 8.350722 TCTTTAATATCGTCACTGAGTATGACC 58.649 37.037 0.00 0.00 42.97 4.02
2417 2580 5.589050 AGAACTTTGGTGTGTAAACCTCTTC 59.411 40.000 0.00 0.00 41.16 2.87
2627 2795 7.842887 AGATCTTGTAAGTACTAATCCCTCC 57.157 40.000 0.00 0.00 0.00 4.30
2628 2796 6.490721 AGATCTTGTAAGTACTAATCCCTCCG 59.509 42.308 0.00 0.00 0.00 4.63
2629 2797 5.513233 TCTTGTAAGTACTAATCCCTCCGT 58.487 41.667 0.00 0.00 0.00 4.69
2630 2798 5.954150 TCTTGTAAGTACTAATCCCTCCGTT 59.046 40.000 0.00 0.00 0.00 4.44
2631 2799 5.841957 TGTAAGTACTAATCCCTCCGTTC 57.158 43.478 0.00 0.00 0.00 3.95
2632 2800 4.646492 TGTAAGTACTAATCCCTCCGTTCC 59.354 45.833 0.00 0.00 0.00 3.62
2633 2801 3.393426 AGTACTAATCCCTCCGTTCCA 57.607 47.619 0.00 0.00 0.00 3.53
2634 2802 3.716431 AGTACTAATCCCTCCGTTCCAA 58.284 45.455 0.00 0.00 0.00 3.53
2635 2803 4.098894 AGTACTAATCCCTCCGTTCCAAA 58.901 43.478 0.00 0.00 0.00 3.28
2636 2804 4.533311 AGTACTAATCCCTCCGTTCCAAAA 59.467 41.667 0.00 0.00 0.00 2.44
2637 2805 4.586306 ACTAATCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
2638 2806 5.703730 ACTAATCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
2639 2807 5.681639 ACTAATCCCTCCGTTCCAAAATAG 58.318 41.667 0.00 0.00 0.00 1.73
2640 2808 4.855298 AATCCCTCCGTTCCAAAATAGA 57.145 40.909 0.00 0.00 0.00 1.98
2641 2809 5.388599 AATCCCTCCGTTCCAAAATAGAT 57.611 39.130 0.00 0.00 0.00 1.98
2642 2810 4.150897 TCCCTCCGTTCCAAAATAGATG 57.849 45.455 0.00 0.00 0.00 2.90
2643 2811 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2644 2812 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2645 2813 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2646 2814 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2647 2815 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2648 2816 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2649 2817 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2650 2818 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2651 2819 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2652 2820 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2653 2821 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2654 2822 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2655 2823 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2656 2824 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2657 2825 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2658 2826 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2659 2827 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2660 2828 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
2661 2829 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
2662 2830 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
2663 2831 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
2664 2832 6.687081 TGACCCAACTTTGTACTAACTTTG 57.313 37.500 0.00 0.00 0.00 2.77
2665 2833 6.181908 TGACCCAACTTTGTACTAACTTTGT 58.818 36.000 0.00 0.00 0.00 2.83
2666 2834 7.337167 TGACCCAACTTTGTACTAACTTTGTA 58.663 34.615 0.00 0.00 0.00 2.41
2667 2835 7.280652 TGACCCAACTTTGTACTAACTTTGTAC 59.719 37.037 6.58 6.58 40.27 2.90
2668 2836 7.111466 ACCCAACTTTGTACTAACTTTGTACA 58.889 34.615 10.91 10.91 45.56 2.90
2689 2857 8.783093 TGTACAAAGTTGAGTCATCTATTTTGG 58.217 33.333 14.35 0.00 40.00 3.28
2690 2858 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
2691 2859 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
2692 2860 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
2693 2861 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2694 2862 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2695 2863 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2696 2864 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2697 2865 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2698 2866 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2699 2867 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2700 2868 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3118 3299 4.437930 GCAGAGCTTTGTATGGTTAAGCAG 60.438 45.833 13.51 0.00 45.08 4.24
3179 3360 6.183360 GGGAACTCTTATACGTTGTTGGAATG 60.183 42.308 0.00 0.00 0.00 2.67
3330 3511 2.361230 GGTAGTGCCCTTGTGCCC 60.361 66.667 0.00 0.00 0.00 5.36
3403 3584 7.640240 CGCTTTAAGCTCAGTTTTGGTATATTC 59.360 37.037 15.29 0.00 39.60 1.75
3479 3660 2.890311 TGCACCTGAATCCGTTCAAAAT 59.110 40.909 0.00 0.00 43.39 1.82
3573 3837 3.855689 CCAATTGATGGTGTCTCAACC 57.144 47.619 7.12 0.00 44.85 3.77
3603 3867 6.713903 AGGTTAATGAGGATGTTGAGCATATG 59.286 38.462 0.00 0.00 38.06 1.78
3660 4039 7.386851 ACATAAGATGGGAATGGTATTAGACG 58.613 38.462 0.00 0.00 33.60 4.18
3858 4239 3.868369 GCTGGTAGCATACAACCTTGTCA 60.868 47.826 0.00 0.00 45.43 3.58
3901 4282 0.317854 GTGTGGCCGTTTTGCTCTTC 60.318 55.000 0.00 0.00 0.00 2.87
4069 4450 4.591072 GCCTCCAACTCTATAAGGTGAGAT 59.409 45.833 0.00 0.00 46.43 2.75
4076 4457 4.759693 ACTCTATAAGGTGAGATCGAGCTG 59.240 45.833 8.50 0.00 34.65 4.24
4150 6358 1.675714 GCCAGCGCCATGTATGCTATA 60.676 52.381 2.29 0.00 37.15 1.31
4155 6363 2.031314 GCGCCATGTATGCTATATGCTG 59.969 50.000 0.00 0.00 43.37 4.41
4352 6564 8.514594 GTGAAATTCAGATTTGTGGAGTATGAA 58.485 33.333 0.00 0.00 35.65 2.57
4393 6621 5.125257 TGTTGTTGCTCTTTGATTTCACTCA 59.875 36.000 0.00 0.00 0.00 3.41
4430 6665 9.044150 CATTTTTGTACAAATCATTGGTTCACT 57.956 29.630 21.17 0.00 41.01 3.41
4440 6675 4.000325 TCATTGGTTCACTGTCATTACGG 59.000 43.478 0.00 0.00 38.04 4.02
4446 6681 1.346395 TCACTGTCATTACGGTTGCCT 59.654 47.619 0.00 0.00 42.83 4.75
4464 6701 1.413118 CTCAAAAACCAGTGGCCCTT 58.587 50.000 9.78 0.00 0.00 3.95
4467 6704 0.980231 AAAAACCAGTGGCCCTTGCA 60.980 50.000 9.78 0.00 40.13 4.08
4494 6744 1.734388 GCCCGTGCCAAAAGAAGTGT 61.734 55.000 0.00 0.00 0.00 3.55
4495 6745 0.744281 CCCGTGCCAAAAGAAGTGTT 59.256 50.000 0.00 0.00 0.00 3.32
4496 6746 1.535860 CCCGTGCCAAAAGAAGTGTTG 60.536 52.381 0.00 0.00 0.00 3.33
4690 6990 9.533253 AGTTTGTGAACTTTATTTCAGATTTGG 57.467 29.630 0.00 0.00 43.48 3.28
4866 7174 7.930513 TTATAATATAGCAATGGAGCGATCG 57.069 36.000 11.69 11.69 40.15 3.69
4871 7179 2.083774 AGCAATGGAGCGATCGAAAAA 58.916 42.857 21.57 0.89 40.15 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.110486 GAGGCCCAACTTCACCAAGA 59.890 55.000 0.00 0.00 33.34 3.02
21 22 3.656045 GGTGTTTGGTGGTCGCCG 61.656 66.667 0.00 0.00 0.00 6.46
57 58 0.667993 CCATGTTGAGTTGTTGGCGT 59.332 50.000 0.00 0.00 0.00 5.68
66 67 1.956477 GCAAACACCTCCATGTTGAGT 59.044 47.619 0.00 0.00 42.01 3.41
71 72 2.014010 AATGGCAAACACCTCCATGT 57.986 45.000 0.00 0.00 40.24 3.21
119 120 2.173519 CCTCACCAATGAAGCCACATT 58.826 47.619 0.94 0.94 40.50 2.71
125 126 1.336240 GCAACACCTCACCAATGAAGC 60.336 52.381 0.00 0.00 33.30 3.86
142 143 2.747460 GCTCTGCCACCATCGCAA 60.747 61.111 0.00 0.00 35.40 4.85
147 148 2.045926 GGTTCGCTCTGCCACCAT 60.046 61.111 0.00 0.00 31.07 3.55
151 152 1.073025 ATGTTGGTTCGCTCTGCCA 59.927 52.632 0.00 0.00 0.00 4.92
155 156 1.679944 CCATCCATGTTGGTTCGCTCT 60.680 52.381 4.18 0.00 39.03 4.09
177 178 0.958822 ACCCACCGAAAATCAAGCAC 59.041 50.000 0.00 0.00 0.00 4.40
182 183 1.659022 TCCCTACCCACCGAAAATCA 58.341 50.000 0.00 0.00 0.00 2.57
187 188 0.986019 ATGCATCCCTACCCACCGAA 60.986 55.000 0.00 0.00 0.00 4.30
188 189 1.383943 ATGCATCCCTACCCACCGA 60.384 57.895 0.00 0.00 0.00 4.69
189 190 1.227943 CATGCATCCCTACCCACCG 60.228 63.158 0.00 0.00 0.00 4.94
190 191 0.466189 CACATGCATCCCTACCCACC 60.466 60.000 0.00 0.00 0.00 4.61
196 197 1.066454 CGTCGTACACATGCATCCCTA 59.934 52.381 0.00 0.00 0.00 3.53
201 202 4.503007 GTCTAAATCGTCGTACACATGCAT 59.497 41.667 0.00 0.00 0.00 3.96
259 260 0.163788 GACACCAACAAGCATCGTCG 59.836 55.000 0.00 0.00 0.00 5.12
272 273 2.863346 CGTTGAGGGGACGACACCA 61.863 63.158 9.31 0.00 43.15 4.17
288 289 0.320421 CACCACATCGGAACCTTCGT 60.320 55.000 0.00 0.00 38.63 3.85
291 292 0.472471 ACACACCACATCGGAACCTT 59.528 50.000 0.00 0.00 38.63 3.50
295 296 1.000843 CAGAGACACACCACATCGGAA 59.999 52.381 0.00 0.00 38.63 4.30
358 369 4.935205 CCACCATTGTCGATCTGAAACTAA 59.065 41.667 0.00 0.00 0.00 2.24
359 370 4.503910 CCACCATTGTCGATCTGAAACTA 58.496 43.478 0.00 0.00 0.00 2.24
370 381 2.047274 AGGACGCCACCATTGTCG 60.047 61.111 0.00 0.00 33.45 4.35
401 412 6.012113 TCTCCATAAATAATGCTCCCAATGG 58.988 40.000 0.00 0.00 33.92 3.16
403 414 6.491403 GTGTCTCCATAAATAATGCTCCCAAT 59.509 38.462 0.00 0.00 33.92 3.16
410 421 6.422223 CAACTCGTGTCTCCATAAATAATGC 58.578 40.000 0.00 0.00 33.92 3.56
419 430 0.898320 CCTCCAACTCGTGTCTCCAT 59.102 55.000 0.00 0.00 0.00 3.41
421 432 0.680061 AACCTCCAACTCGTGTCTCC 59.320 55.000 0.00 0.00 0.00 3.71
425 436 2.897969 ACATAGAACCTCCAACTCGTGT 59.102 45.455 0.00 0.00 0.00 4.49
462 473 1.398390 GCAATCTAGAACAACGGCAGG 59.602 52.381 0.00 0.00 0.00 4.85
471 482 3.274288 CCCCTCACAAGCAATCTAGAAC 58.726 50.000 0.00 0.00 0.00 3.01
499 510 2.047655 TCACCCGCAATGACGTCC 60.048 61.111 14.12 0.00 0.00 4.79
553 564 3.307906 TTGACGGGTGGGTCTCGG 61.308 66.667 0.00 0.00 45.43 4.63
580 591 0.827507 GCACCAACCACCCTGATTGT 60.828 55.000 0.00 0.00 0.00 2.71
596 607 1.925185 GAACTATCCTTTCCGACGCAC 59.075 52.381 0.00 0.00 0.00 5.34
603 614 6.872547 ACAACTCTAAACGAACTATCCTTTCC 59.127 38.462 0.00 0.00 0.00 3.13
647 658 3.576078 AATGTGTCTCAACCAACTCCA 57.424 42.857 0.00 0.00 0.00 3.86
663 674 3.118445 CCCAACCAGACCAACAAAAATGT 60.118 43.478 0.00 0.00 0.00 2.71
665 676 3.133901 GTCCCAACCAGACCAACAAAAAT 59.866 43.478 0.00 0.00 0.00 1.82
667 678 2.104170 GTCCCAACCAGACCAACAAAA 58.896 47.619 0.00 0.00 0.00 2.44
680 691 3.940209 TGCATCAAAGAATGTCCCAAC 57.060 42.857 0.00 0.00 0.00 3.77
690 701 6.839124 AATACAACTCCAATGCATCAAAGA 57.161 33.333 0.00 0.00 0.00 2.52
700 711 4.584325 AGCACACACAAATACAACTCCAAT 59.416 37.500 0.00 0.00 0.00 3.16
703 714 4.568152 AAGCACACACAAATACAACTCC 57.432 40.909 0.00 0.00 0.00 3.85
715 726 4.814771 ACCTACTCAAACTTAAGCACACAC 59.185 41.667 1.29 0.00 0.00 3.82
725 736 5.437060 TGAGAAGCAAACCTACTCAAACTT 58.563 37.500 0.00 0.00 35.20 2.66
886 898 2.034066 CCCACCACATCTGCCGTT 59.966 61.111 0.00 0.00 0.00 4.44
907 919 1.001974 TCCATACACGCTGCAGAACTT 59.998 47.619 20.43 0.21 0.00 2.66
948 960 0.524392 CGTCGCAGATCTGGTGACTC 60.524 60.000 23.89 5.34 42.17 3.36
1491 1567 1.077212 CTGAGTGAATGCCCCCTGG 60.077 63.158 0.00 0.00 0.00 4.45
1817 1914 0.566176 ATAGATCCCGGAACCCTCCA 59.434 55.000 0.73 0.00 42.58 3.86
2072 2190 1.906574 TCTTAACCACCCTGCTACTGG 59.093 52.381 0.00 0.00 0.00 4.00
2261 2388 8.128322 AGTGCATACCTTCCTATATTACAGAG 57.872 38.462 0.00 0.00 0.00 3.35
2310 2438 9.699703 GAGGTTCTTAATATCCAACATCTAGTC 57.300 37.037 0.00 0.00 29.15 2.59
2613 2781 3.393426 TGGAACGGAGGGATTAGTACT 57.607 47.619 0.00 0.00 0.00 2.73
2614 2782 4.476628 TTTGGAACGGAGGGATTAGTAC 57.523 45.455 0.00 0.00 0.00 2.73
2617 2785 5.925509 TCTATTTTGGAACGGAGGGATTAG 58.074 41.667 0.00 0.00 0.00 1.73
2618 2786 5.961398 TCTATTTTGGAACGGAGGGATTA 57.039 39.130 0.00 0.00 0.00 1.75
2619 2787 4.855298 TCTATTTTGGAACGGAGGGATT 57.145 40.909 0.00 0.00 0.00 3.01
2621 2789 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2622 2790 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2623 2791 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2624 2792 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2625 2793 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2626 2794 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2627 2795 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2628 2796 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2629 2797 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2630 2798 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2631 2799 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2632 2800 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2633 2801 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2634 2802 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
2635 2803 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
2636 2804 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
2637 2805 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
2638 2806 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
2639 2807 7.012989 ACAAAGTTAGTACAAAGTTGGGTCATC 59.987 37.037 0.00 0.00 0.00 2.92
2640 2808 6.831868 ACAAAGTTAGTACAAAGTTGGGTCAT 59.168 34.615 0.00 0.00 0.00 3.06
2641 2809 6.181908 ACAAAGTTAGTACAAAGTTGGGTCA 58.818 36.000 0.00 0.00 0.00 4.02
2642 2810 6.688637 ACAAAGTTAGTACAAAGTTGGGTC 57.311 37.500 0.00 0.00 0.00 4.46
2643 2811 7.111466 TGTACAAAGTTAGTACAAAGTTGGGT 58.889 34.615 3.90 0.00 46.22 4.51
2644 2812 7.556733 TGTACAAAGTTAGTACAAAGTTGGG 57.443 36.000 3.90 0.00 46.22 4.12
2663 2831 8.783093 CCAAAATAGATGACTCAACTTTGTACA 58.217 33.333 0.00 0.00 0.00 2.90
2664 2832 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
2665 2833 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2666 2834 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2667 2835 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
2668 2836 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2669 2837 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2670 2838 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2671 2839 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2672 2840 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2673 2841 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2674 2842 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2675 2843 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2676 2844 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2677 2845 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2678 2846 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2679 2847 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2680 2848 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2681 2849 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2682 2850 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2683 2851 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2684 2852 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
2685 2853 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2686 2854 2.019807 AAGTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
2687 2855 1.897802 GAAAGTACTCCCTCCGTTCCA 59.102 52.381 0.00 0.00 0.00 3.53
2688 2856 1.206610 GGAAAGTACTCCCTCCGTTCC 59.793 57.143 0.00 0.00 0.00 3.62
2689 2857 1.897802 TGGAAAGTACTCCCTCCGTTC 59.102 52.381 13.46 4.69 34.22 3.95
2690 2858 2.019807 TGGAAAGTACTCCCTCCGTT 57.980 50.000 13.46 0.00 34.22 4.44
2691 2859 2.249309 ATGGAAAGTACTCCCTCCGT 57.751 50.000 13.46 10.37 34.22 4.69
2692 2860 2.364647 GGTATGGAAAGTACTCCCTCCG 59.635 54.545 13.46 0.00 34.22 4.63
2693 2861 3.655384 AGGTATGGAAAGTACTCCCTCC 58.345 50.000 13.46 11.91 34.22 4.30
2694 2862 7.342541 GGATATAGGTATGGAAAGTACTCCCTC 59.657 44.444 13.46 4.06 34.22 4.30
2695 2863 7.020781 AGGATATAGGTATGGAAAGTACTCCCT 59.979 40.741 13.46 5.96 34.22 4.20
2696 2864 7.190501 AGGATATAGGTATGGAAAGTACTCCC 58.809 42.308 0.00 1.23 34.22 4.30
2697 2865 7.894364 TGAGGATATAGGTATGGAAAGTACTCC 59.106 40.741 0.00 0.00 35.88 3.85
2698 2866 8.880991 TGAGGATATAGGTATGGAAAGTACTC 57.119 38.462 0.00 0.00 0.00 2.59
2699 2867 9.845214 ATTGAGGATATAGGTATGGAAAGTACT 57.155 33.333 0.00 0.00 0.00 2.73
2932 3105 4.626287 GCTCTGGGACCTGATCACAAATTA 60.626 45.833 0.00 0.00 41.43 1.40
2999 3172 5.438833 TCAGGAGTAGGCTACTAAGACTTC 58.561 45.833 26.30 12.47 38.18 3.01
3118 3299 3.451178 TGGACTGCTCTTGGGTTATCTAC 59.549 47.826 0.00 0.00 0.00 2.59
3168 3349 4.836125 ACACATCAGACATTCCAACAAC 57.164 40.909 0.00 0.00 0.00 3.32
3330 3511 5.460419 GTGGATGAGCTATAAAACTCTGTCG 59.540 44.000 0.00 0.00 33.92 4.35
3378 3559 8.458843 TGAATATACCAAAACTGAGCTTAAAGC 58.541 33.333 0.00 0.00 42.84 3.51
3408 3589 5.653769 GGGGATGAGATGAATTTTCTGAACA 59.346 40.000 0.00 0.00 0.00 3.18
3573 3837 3.543680 ACATCCTCATTAACCTGACCG 57.456 47.619 0.00 0.00 0.00 4.79
3603 3867 5.831997 ACTGAACTTGCCAAATGTAGAAAC 58.168 37.500 0.00 0.00 0.00 2.78
3660 4039 8.524870 ACATCATTTTTGCAATGACTCTAAAC 57.475 30.769 0.00 0.00 39.22 2.01
3858 4239 6.594159 ACATTAGTTGCTTTAGTATGCGAAGT 59.406 34.615 0.00 0.00 0.00 3.01
3901 4282 2.533318 GGTCAGCAACTTCAGACCG 58.467 57.895 0.00 0.00 40.89 4.79
4017 4398 4.767255 GCTGCAGGACCACCTCGG 62.767 72.222 17.12 0.00 45.94 4.63
4069 4450 1.512926 GAGTTTTGCTTCCAGCTCGA 58.487 50.000 0.00 0.00 42.97 4.04
4076 4457 0.790814 CGTCCTCGAGTTTTGCTTCC 59.209 55.000 12.31 0.00 39.71 3.46
4150 6358 1.884579 CCAAGAACAAGAGCACAGCAT 59.115 47.619 0.00 0.00 0.00 3.79
4155 6363 1.322442 AAGGCCAAGAACAAGAGCAC 58.678 50.000 5.01 0.00 0.00 4.40
4240 6448 4.389374 ACCAACAGTCCAACACTAATCAG 58.611 43.478 0.00 0.00 32.21 2.90
4352 6564 1.298953 ACATGCCCTCTTACACCCAT 58.701 50.000 0.00 0.00 0.00 4.00
4382 6610 5.857268 TGTCTGACATCTTGAGTGAAATCA 58.143 37.500 6.36 0.00 0.00 2.57
4393 6621 9.683069 GATTTGTACAAAAATGTCTGACATCTT 57.317 29.630 23.97 13.33 33.08 2.40
4430 6665 2.552599 TTGAGGCAACCGTAATGACA 57.447 45.000 0.00 0.00 37.17 3.58
4440 6675 1.806247 GCCACTGGTTTTTGAGGCAAC 60.806 52.381 0.00 0.00 39.24 4.17
4446 6681 1.118838 CAAGGGCCACTGGTTTTTGA 58.881 50.000 6.18 0.00 0.00 2.69
4685 6985 8.750515 AAAACATGGATTTCAGAAAACCAAAT 57.249 26.923 24.38 14.73 32.79 2.32
4817 7122 6.508030 AAGGCTGGGAATCCTTTTTAAAAA 57.492 33.333 12.62 12.62 39.53 1.94
4832 7140 8.253113 CCATTGCTATATTATAAAAAGGCTGGG 58.747 37.037 0.00 0.00 0.00 4.45
4843 7151 7.272037 TCGATCGCTCCATTGCTATATTATA 57.728 36.000 11.09 0.00 0.00 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.