Multiple sequence alignment - TraesCS3A01G460600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G460600 chr3A 100.000 2942 0 0 1 2942 696640437 696643378 0.000000e+00 5433.0
1 TraesCS3A01G460600 chr3D 91.583 1093 64 10 837 1929 560854444 560855508 0.000000e+00 1483.0
2 TraesCS3A01G460600 chr3D 81.095 804 76 36 56 820 560853694 560854460 9.150000e-160 573.0
3 TraesCS3A01G460600 chr3D 84.828 145 9 6 2079 2220 560855703 560855837 1.840000e-27 134.0
4 TraesCS3A01G460600 chr3D 100.000 52 0 0 1 52 560829314 560829365 2.410000e-16 97.1
5 TraesCS3A01G460600 chr3B 89.054 1142 83 19 951 2053 745544652 745545790 0.000000e+00 1378.0
6 TraesCS3A01G460600 chr3B 79.407 573 76 19 2327 2893 745546142 745546678 1.670000e-97 366.0
7 TraesCS3A01G460600 chr2D 94.444 36 0 1 716 751 9748979 9748946 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G460600 chr3A 696640437 696643378 2941 False 5433 5433 100.000000 1 2942 1 chr3A.!!$F1 2941
1 TraesCS3A01G460600 chr3D 560853694 560855837 2143 False 730 1483 85.835333 56 2220 3 chr3D.!!$F2 2164
2 TraesCS3A01G460600 chr3B 745544652 745546678 2026 False 872 1378 84.230500 951 2893 2 chr3B.!!$F1 1942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 205 0.106268 TTTCTTGTTCCTGCTGCCCA 60.106 50.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2060 2204 0.391528 GCATGCTTCCCCGCAAATTT 60.392 50.0 11.37 0.0 44.06 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.840780 ATCCCTCCTTCAAATGTTAAACAG 57.159 37.500 0.00 0.00 0.00 3.16
26 27 5.701224 TCCCTCCTTCAAATGTTAAACAGT 58.299 37.500 0.00 0.00 0.00 3.55
27 28 5.534654 TCCCTCCTTCAAATGTTAAACAGTG 59.465 40.000 0.00 0.00 0.00 3.66
28 29 5.278957 CCCTCCTTCAAATGTTAAACAGTGG 60.279 44.000 0.00 0.00 0.00 4.00
29 30 5.195001 TCCTTCAAATGTTAAACAGTGGC 57.805 39.130 0.00 0.00 0.00 5.01
30 31 4.038642 TCCTTCAAATGTTAAACAGTGGCC 59.961 41.667 0.00 0.00 0.00 5.36
31 32 4.202202 CCTTCAAATGTTAAACAGTGGCCA 60.202 41.667 0.00 0.00 0.00 5.36
32 33 5.511202 CCTTCAAATGTTAAACAGTGGCCAT 60.511 40.000 9.72 0.00 0.00 4.40
33 34 4.880759 TCAAATGTTAAACAGTGGCCATG 58.119 39.130 9.72 11.26 0.00 3.66
34 35 3.317603 AATGTTAAACAGTGGCCATGC 57.682 42.857 9.72 0.00 0.00 4.06
35 36 1.697284 TGTTAAACAGTGGCCATGCA 58.303 45.000 9.72 0.00 0.00 3.96
36 37 2.034878 TGTTAAACAGTGGCCATGCAA 58.965 42.857 9.72 1.51 0.00 4.08
37 38 2.632028 TGTTAAACAGTGGCCATGCAAT 59.368 40.909 9.72 0.00 0.00 3.56
38 39 3.253230 GTTAAACAGTGGCCATGCAATC 58.747 45.455 9.72 0.00 0.00 2.67
39 40 1.340088 AAACAGTGGCCATGCAATCA 58.660 45.000 9.72 0.00 0.00 2.57
40 41 0.892755 AACAGTGGCCATGCAATCAG 59.107 50.000 9.72 0.00 0.00 2.90
41 42 0.251474 ACAGTGGCCATGCAATCAGT 60.251 50.000 9.72 0.00 0.00 3.41
42 43 0.172578 CAGTGGCCATGCAATCAGTG 59.827 55.000 9.72 0.00 0.00 3.66
43 44 0.968901 AGTGGCCATGCAATCAGTGG 60.969 55.000 9.72 0.00 36.09 4.00
46 47 4.021559 CCATGCAATCAGTGGCCA 57.978 55.556 0.00 0.00 0.00 5.36
47 48 1.514087 CCATGCAATCAGTGGCCAC 59.486 57.895 29.22 29.22 0.00 5.01
48 49 0.968901 CCATGCAATCAGTGGCCACT 60.969 55.000 33.20 33.20 43.61 4.00
49 50 0.892755 CATGCAATCAGTGGCCACTT 59.107 50.000 36.06 20.44 40.20 3.16
50 51 1.274167 CATGCAATCAGTGGCCACTTT 59.726 47.619 36.06 25.17 40.20 2.66
51 52 0.675083 TGCAATCAGTGGCCACTTTG 59.325 50.000 36.06 33.97 40.20 2.77
52 53 0.675633 GCAATCAGTGGCCACTTTGT 59.324 50.000 34.67 23.52 40.20 2.83
53 54 1.069049 GCAATCAGTGGCCACTTTGTT 59.931 47.619 34.67 26.66 40.20 2.83
54 55 2.863704 GCAATCAGTGGCCACTTTGTTC 60.864 50.000 34.67 23.09 40.20 3.18
59 60 0.389025 GTGGCCACTTTGTTCTTGGG 59.611 55.000 29.12 0.00 0.00 4.12
82 83 5.261216 GGGAATTCCAGGACTTAATGACAA 58.739 41.667 25.67 0.00 37.91 3.18
162 163 1.427368 TGTTGGGCTGGGACACTTAAT 59.573 47.619 0.00 0.00 0.00 1.40
197 205 0.106268 TTTCTTGTTCCTGCTGCCCA 60.106 50.000 0.00 0.00 0.00 5.36
198 206 0.106268 TTCTTGTTCCTGCTGCCCAA 60.106 50.000 0.00 0.00 0.00 4.12
199 207 0.106268 TCTTGTTCCTGCTGCCCAAA 60.106 50.000 0.00 0.00 0.00 3.28
200 208 0.316204 CTTGTTCCTGCTGCCCAAAG 59.684 55.000 0.00 0.00 0.00 2.77
201 209 0.106268 TTGTTCCTGCTGCCCAAAGA 60.106 50.000 0.00 0.00 0.00 2.52
202 210 0.538057 TGTTCCTGCTGCCCAAAGAG 60.538 55.000 0.00 0.00 0.00 2.85
203 211 1.075482 TTCCTGCTGCCCAAAGAGG 59.925 57.895 0.00 0.00 37.03 3.69
212 220 4.672251 CCAAAGAGGGGAGCCATG 57.328 61.111 0.00 0.00 0.00 3.66
213 221 1.693640 CCAAAGAGGGGAGCCATGT 59.306 57.895 0.00 0.00 0.00 3.21
214 222 0.918983 CCAAAGAGGGGAGCCATGTA 59.081 55.000 0.00 0.00 0.00 2.29
215 223 1.284785 CCAAAGAGGGGAGCCATGTAA 59.715 52.381 0.00 0.00 0.00 2.41
216 224 2.291540 CCAAAGAGGGGAGCCATGTAAA 60.292 50.000 0.00 0.00 0.00 2.01
217 225 2.755103 CAAAGAGGGGAGCCATGTAAAC 59.245 50.000 0.00 0.00 0.00 2.01
218 226 0.541863 AGAGGGGAGCCATGTAAACG 59.458 55.000 0.00 0.00 0.00 3.60
219 227 0.463833 GAGGGGAGCCATGTAAACGG 60.464 60.000 0.00 0.00 0.00 4.44
220 228 1.205460 AGGGGAGCCATGTAAACGGT 61.205 55.000 0.00 0.00 0.00 4.83
221 229 0.542805 GGGGAGCCATGTAAACGGTA 59.457 55.000 0.00 0.00 0.00 4.02
222 230 1.474498 GGGGAGCCATGTAAACGGTAG 60.474 57.143 0.00 0.00 0.00 3.18
223 231 1.296727 GGAGCCATGTAAACGGTAGC 58.703 55.000 0.00 0.00 0.00 3.58
224 232 1.134491 GGAGCCATGTAAACGGTAGCT 60.134 52.381 0.00 0.00 0.00 3.32
225 233 2.202566 GAGCCATGTAAACGGTAGCTC 58.797 52.381 0.00 0.00 38.56 4.09
230 238 4.557205 CCATGTAAACGGTAGCTCCTATC 58.443 47.826 0.00 0.00 0.00 2.08
233 241 4.275810 TGTAAACGGTAGCTCCTATCTGT 58.724 43.478 0.00 0.00 0.00 3.41
235 243 2.730934 ACGGTAGCTCCTATCTGTGA 57.269 50.000 0.00 0.00 0.00 3.58
249 257 3.499737 GTGACAGATTGGCGGCCG 61.500 66.667 24.05 24.05 0.00 6.13
262 270 4.307908 GGCCGAACGCACACACAC 62.308 66.667 0.00 0.00 40.31 3.82
263 271 4.643385 GCCGAACGCACACACACG 62.643 66.667 0.00 0.00 37.47 4.49
264 272 3.259020 CCGAACGCACACACACGT 61.259 61.111 0.00 0.00 46.07 4.49
268 276 4.819082 ACGCACACACACGTTACT 57.181 50.000 0.00 0.00 40.09 2.24
269 277 3.053662 ACGCACACACACGTTACTT 57.946 47.368 0.00 0.00 40.09 2.24
290 298 1.630148 TTTTTGTGGCAAAACGTCCG 58.370 45.000 6.54 0.00 0.00 4.79
293 301 0.463295 TTGTGGCAAAACGTCCGGTA 60.463 50.000 0.00 0.00 0.00 4.02
297 305 0.167251 GGCAAAACGTCCGGTATGTG 59.833 55.000 0.00 0.00 0.00 3.21
320 328 3.008835 ACCGTAGTGGATACTGTAGCA 57.991 47.619 5.36 0.00 42.00 3.49
323 331 4.110482 CCGTAGTGGATACTGTAGCAAAC 58.890 47.826 5.36 3.08 42.00 2.93
340 348 5.949735 AGCAAACGGTAGTGGATAATTTTG 58.050 37.500 0.00 0.00 0.00 2.44
342 350 5.571357 GCAAACGGTAGTGGATAATTTTGTG 59.429 40.000 0.00 0.00 0.00 3.33
343 351 6.568844 GCAAACGGTAGTGGATAATTTTGTGA 60.569 38.462 0.00 0.00 0.00 3.58
344 352 7.364200 CAAACGGTAGTGGATAATTTTGTGAA 58.636 34.615 0.00 0.00 0.00 3.18
418 426 9.737427 TCTAAAATATTTTGAAAAGTGCGAACA 57.263 25.926 21.19 0.00 0.00 3.18
466 474 7.944729 TTCTGAAAAGAGGAATATTCTTGGG 57.055 36.000 14.95 0.00 35.20 4.12
491 499 5.514059 AATTGAATCAATTTTTGACCGCG 57.486 34.783 14.86 0.00 40.60 6.46
492 500 3.906014 TGAATCAATTTTTGACCGCGA 57.094 38.095 8.23 0.00 43.48 5.87
493 501 4.230314 TGAATCAATTTTTGACCGCGAA 57.770 36.364 8.23 0.00 43.48 4.70
494 502 3.978217 TGAATCAATTTTTGACCGCGAAC 59.022 39.130 8.23 0.76 43.48 3.95
496 504 3.634568 TCAATTTTTGACCGCGAACAT 57.365 38.095 8.23 0.00 34.08 2.71
497 505 3.971150 TCAATTTTTGACCGCGAACATT 58.029 36.364 8.23 0.00 34.08 2.71
510 520 7.222999 TGACCGCGAACATTTTTCTTTATTTTT 59.777 29.630 8.23 0.00 0.00 1.94
651 669 9.717942 TTTTGAAATTCCAAGAAAGTTTGAAGA 57.282 25.926 0.00 0.00 0.00 2.87
654 672 7.439056 TGAAATTCCAAGAAAGTTTGAAGATGC 59.561 33.333 0.00 0.00 0.00 3.91
657 675 4.214119 TCCAAGAAAGTTTGAAGATGCGAG 59.786 41.667 0.00 0.00 0.00 5.03
661 679 4.217118 AGAAAGTTTGAAGATGCGAGCATT 59.783 37.500 12.16 0.00 36.70 3.56
668 686 3.125829 TGAAGATGCGAGCATTTTCTGAC 59.874 43.478 28.95 13.52 43.58 3.51
669 687 2.012673 AGATGCGAGCATTTTCTGACC 58.987 47.619 12.16 0.00 36.70 4.02
670 688 1.739466 GATGCGAGCATTTTCTGACCA 59.261 47.619 12.16 0.00 36.70 4.02
671 689 1.603456 TGCGAGCATTTTCTGACCAA 58.397 45.000 0.00 0.00 0.00 3.67
672 690 2.161855 TGCGAGCATTTTCTGACCAAT 58.838 42.857 0.00 0.00 0.00 3.16
678 720 7.141363 GCGAGCATTTTCTGACCAATATTTAT 58.859 34.615 0.00 0.00 0.00 1.40
784 828 0.539986 TGTAATTGGAGGCCCGACTC 59.460 55.000 0.00 0.00 36.76 3.36
820 864 0.818296 CCGACTCCGACTCCAATTCT 59.182 55.000 0.00 0.00 38.22 2.40
821 865 1.204941 CCGACTCCGACTCCAATTCTT 59.795 52.381 0.00 0.00 38.22 2.52
822 866 2.531206 CGACTCCGACTCCAATTCTTC 58.469 52.381 0.00 0.00 38.22 2.87
823 867 2.164624 CGACTCCGACTCCAATTCTTCT 59.835 50.000 0.00 0.00 38.22 2.85
824 868 3.367498 CGACTCCGACTCCAATTCTTCTT 60.367 47.826 0.00 0.00 38.22 2.52
825 869 4.570930 GACTCCGACTCCAATTCTTCTTT 58.429 43.478 0.00 0.00 0.00 2.52
826 870 4.974399 ACTCCGACTCCAATTCTTCTTTT 58.026 39.130 0.00 0.00 0.00 2.27
827 871 5.377478 ACTCCGACTCCAATTCTTCTTTTT 58.623 37.500 0.00 0.00 0.00 1.94
844 888 2.249844 TTTTTGAGGGTGACTCCGAC 57.750 50.000 0.00 0.00 46.01 4.79
845 889 1.420430 TTTTGAGGGTGACTCCGACT 58.580 50.000 0.00 0.00 46.01 4.18
846 890 0.966920 TTTGAGGGTGACTCCGACTC 59.033 55.000 0.00 0.00 46.01 3.36
847 891 0.898789 TTGAGGGTGACTCCGACTCC 60.899 60.000 0.00 0.00 46.01 3.85
848 892 1.304217 GAGGGTGACTCCGACTCCA 60.304 63.158 0.00 0.00 40.49 3.86
849 893 0.898789 GAGGGTGACTCCGACTCCAA 60.899 60.000 0.00 0.00 40.49 3.53
850 894 0.252284 AGGGTGACTCCGACTCCAAT 60.252 55.000 0.00 0.00 37.00 3.16
851 895 0.613777 GGGTGACTCCGACTCCAATT 59.386 55.000 0.00 0.00 37.00 2.32
852 896 1.405661 GGGTGACTCCGACTCCAATTC 60.406 57.143 0.00 0.00 37.00 2.17
856 900 2.231478 TGACTCCGACTCCAATTCAGTC 59.769 50.000 4.54 4.54 37.51 3.51
864 908 0.322816 TCCAATTCAGTCTGCCCAGC 60.323 55.000 0.00 0.00 0.00 4.85
865 909 1.651240 CCAATTCAGTCTGCCCAGCG 61.651 60.000 0.00 0.00 0.00 5.18
866 910 2.042831 AATTCAGTCTGCCCAGCGC 61.043 57.895 0.00 0.00 38.31 5.92
867 911 3.984193 ATTCAGTCTGCCCAGCGCC 62.984 63.158 2.29 0.00 36.24 6.53
888 932 0.453782 GCCCGTGCGTTCATAAACAC 60.454 55.000 0.00 0.00 34.93 3.32
890 934 1.399215 CCCGTGCGTTCATAAACACAC 60.399 52.381 0.00 0.00 42.40 3.82
899 943 2.038269 ATAAACACACCCAGCCGCG 61.038 57.895 0.00 0.00 0.00 6.46
900 944 2.741486 ATAAACACACCCAGCCGCGT 62.741 55.000 4.92 0.00 0.00 6.01
905 949 2.125310 CACCCAGCCGCGTTCATA 60.125 61.111 4.92 0.00 0.00 2.15
906 950 1.743623 CACCCAGCCGCGTTCATAA 60.744 57.895 4.92 0.00 0.00 1.90
923 967 4.331968 TCATAAACGTGCCTTGATTCCTT 58.668 39.130 0.00 0.00 0.00 3.36
924 968 4.155826 TCATAAACGTGCCTTGATTCCTTG 59.844 41.667 0.00 0.00 0.00 3.61
925 969 0.598065 AACGTGCCTTGATTCCTTGC 59.402 50.000 0.00 0.00 0.00 4.01
926 970 0.250901 ACGTGCCTTGATTCCTTGCT 60.251 50.000 0.00 0.00 0.00 3.91
927 971 1.003118 ACGTGCCTTGATTCCTTGCTA 59.997 47.619 0.00 0.00 0.00 3.49
928 972 1.398390 CGTGCCTTGATTCCTTGCTAC 59.602 52.381 0.00 0.00 0.00 3.58
929 973 1.745653 GTGCCTTGATTCCTTGCTACC 59.254 52.381 0.00 0.00 0.00 3.18
930 974 1.635487 TGCCTTGATTCCTTGCTACCT 59.365 47.619 0.00 0.00 0.00 3.08
931 975 2.019984 GCCTTGATTCCTTGCTACCTG 58.980 52.381 0.00 0.00 0.00 4.00
932 976 2.619074 GCCTTGATTCCTTGCTACCTGT 60.619 50.000 0.00 0.00 0.00 4.00
933 977 3.274288 CCTTGATTCCTTGCTACCTGTC 58.726 50.000 0.00 0.00 0.00 3.51
934 978 3.274288 CTTGATTCCTTGCTACCTGTCC 58.726 50.000 0.00 0.00 0.00 4.02
935 979 2.551270 TGATTCCTTGCTACCTGTCCT 58.449 47.619 0.00 0.00 0.00 3.85
936 980 2.237143 TGATTCCTTGCTACCTGTCCTG 59.763 50.000 0.00 0.00 0.00 3.86
937 981 0.324943 TTCCTTGCTACCTGTCCTGC 59.675 55.000 0.00 0.00 0.00 4.85
938 982 0.545309 TCCTTGCTACCTGTCCTGCT 60.545 55.000 0.00 0.00 0.00 4.24
939 983 0.107945 CCTTGCTACCTGTCCTGCTC 60.108 60.000 0.00 0.00 0.00 4.26
940 984 0.107945 CTTGCTACCTGTCCTGCTCC 60.108 60.000 0.00 0.00 0.00 4.70
941 985 1.888436 TTGCTACCTGTCCTGCTCCG 61.888 60.000 0.00 0.00 0.00 4.63
942 986 2.496817 CTACCTGTCCTGCTCCGC 59.503 66.667 0.00 0.00 0.00 5.54
943 987 3.417275 CTACCTGTCCTGCTCCGCG 62.417 68.421 0.00 0.00 0.00 6.46
1075 1119 1.491563 CGTTTCTGCGGGAAAGACG 59.508 57.895 0.00 0.00 43.59 4.18
1091 1135 2.125952 CGCCATCACAGTCGAGCA 60.126 61.111 0.00 0.00 0.00 4.26
1146 1190 0.900182 ACAGCGACCTGATCCTGTCA 60.900 55.000 11.06 0.00 41.77 3.58
1152 1196 0.541998 ACCTGATCCTGTCACACGGA 60.542 55.000 0.00 0.00 32.22 4.69
1284 1328 1.812922 CAGCGACCTCATCCACAGC 60.813 63.158 0.00 0.00 0.00 4.40
1388 1432 1.678269 GACATAGCCATCGCGATCGC 61.678 60.000 28.08 28.08 41.18 4.58
1514 1567 2.290122 CTGGTCTACAGCGAGCCCAG 62.290 65.000 0.06 0.06 40.97 4.45
1515 1568 2.052690 GGTCTACAGCGAGCCCAGA 61.053 63.158 0.00 0.00 0.00 3.86
1566 1619 4.162690 GCCGCCAAGACCGAGGAT 62.163 66.667 0.00 0.00 0.00 3.24
1710 1772 1.377725 CCACAGTGGGTGCATCCTC 60.378 63.158 18.94 14.44 46.50 3.71
1712 1774 0.675837 CACAGTGGGTGCATCCTCAG 60.676 60.000 18.94 13.36 41.36 3.35
1918 2010 3.661944 CAGCAGCTCATAGATTCCGATT 58.338 45.455 0.00 0.00 0.00 3.34
1920 2012 2.665537 GCAGCTCATAGATTCCGATTCG 59.334 50.000 0.00 0.00 0.00 3.34
1933 2025 0.249238 CGATTCGGAAGAGGAGCTGG 60.249 60.000 0.00 0.00 43.69 4.85
1934 2026 1.115467 GATTCGGAAGAGGAGCTGGA 58.885 55.000 0.00 0.00 43.69 3.86
1963 2095 1.662629 CAGAACAGTCCGCACATCATC 59.337 52.381 0.00 0.00 0.00 2.92
1975 2107 3.220110 GCACATCATCCACTGAATCCAT 58.780 45.455 0.00 0.00 37.44 3.41
1992 2124 2.296190 TCCATCATGAGATCGTTACCCG 59.704 50.000 0.09 0.00 38.13 5.28
2019 2162 5.557891 TTTCCCAAACATTTGTTTTGCAG 57.442 34.783 5.95 0.00 45.07 4.41
2036 2179 3.865224 GCAGTGGCAAATTGTTTCTTG 57.135 42.857 0.00 0.00 40.72 3.02
2041 2184 5.005971 CAGTGGCAAATTGTTTCTTGTCAAG 59.994 40.000 6.21 6.21 38.77 3.02
2043 2186 3.870419 GGCAAATTGTTTCTTGTCAAGCA 59.130 39.130 7.78 0.00 0.00 3.91
2053 2197 7.600960 TGTTTCTTGTCAAGCATGCAAATATA 58.399 30.769 21.98 0.00 0.00 0.86
2054 2198 7.541783 TGTTTCTTGTCAAGCATGCAAATATAC 59.458 33.333 21.98 9.30 0.00 1.47
2055 2199 6.756299 TCTTGTCAAGCATGCAAATATACA 57.244 33.333 21.98 11.77 0.00 2.29
2056 2200 7.155655 TCTTGTCAAGCATGCAAATATACAA 57.844 32.000 21.98 17.75 0.00 2.41
2057 2201 7.600960 TCTTGTCAAGCATGCAAATATACAAA 58.399 30.769 21.98 8.96 0.00 2.83
2058 2202 8.087136 TCTTGTCAAGCATGCAAATATACAAAA 58.913 29.630 21.98 5.49 0.00 2.44
2059 2203 8.599055 TTGTCAAGCATGCAAATATACAAAAA 57.401 26.923 21.98 0.00 0.00 1.94
2082 2226 2.599875 TGCGGGGAAGCATGCAAA 60.600 55.556 21.98 0.00 42.92 3.68
2083 2227 1.983481 TGCGGGGAAGCATGCAAAT 60.983 52.632 21.98 5.29 42.92 2.32
2086 2230 1.885887 GCGGGGAAGCATGCAAATATA 59.114 47.619 21.98 0.00 37.05 0.86
2143 2287 6.925610 TTTCATACCAGCTTTGCATACTAG 57.074 37.500 0.00 0.00 0.00 2.57
2144 2288 4.380531 TCATACCAGCTTTGCATACTAGC 58.619 43.478 0.00 0.00 35.16 3.42
2145 2289 4.101585 TCATACCAGCTTTGCATACTAGCT 59.898 41.667 7.17 7.17 45.64 3.32
2146 2290 5.304357 TCATACCAGCTTTGCATACTAGCTA 59.696 40.000 11.31 0.00 43.04 3.32
2160 2304 2.576191 ACTAGCTATGACCCTTTTGCCA 59.424 45.455 0.00 0.00 0.00 4.92
2165 2309 1.856629 ATGACCCTTTTGCCATGGAG 58.143 50.000 18.40 3.14 0.00 3.86
2166 2310 0.776810 TGACCCTTTTGCCATGGAGA 59.223 50.000 18.40 0.00 0.00 3.71
2167 2311 1.358787 TGACCCTTTTGCCATGGAGAT 59.641 47.619 18.40 0.00 0.00 2.75
2168 2312 1.753073 GACCCTTTTGCCATGGAGATG 59.247 52.381 18.40 2.28 0.00 2.90
2216 2360 3.663995 TGCGTGGCAGTTTACTAACTA 57.336 42.857 0.00 0.00 42.67 2.24
2221 2365 5.231568 GCGTGGCAGTTTACTAACTACTATG 59.768 44.000 0.00 0.00 42.67 2.23
2222 2366 5.747197 CGTGGCAGTTTACTAACTACTATGG 59.253 44.000 0.00 0.00 42.67 2.74
2223 2367 5.522824 GTGGCAGTTTACTAACTACTATGGC 59.477 44.000 0.00 0.00 42.67 4.40
2224 2368 5.188163 TGGCAGTTTACTAACTACTATGGCA 59.812 40.000 0.00 0.00 42.67 4.92
2275 2475 4.895668 ATGGTTGTCAATTGCAATTCCT 57.104 36.364 21.70 0.00 0.00 3.36
2278 2478 5.435291 TGGTTGTCAATTGCAATTCCTTTT 58.565 33.333 21.70 0.00 0.00 2.27
2302 2532 6.494893 TTTTACCTACACTGCACATGATTC 57.505 37.500 0.00 0.00 0.00 2.52
2307 2537 2.867624 ACACTGCACATGATTCCACTT 58.132 42.857 0.00 0.00 0.00 3.16
2337 2600 8.327941 TCTAGAGAGATCCAAACAACAAATTG 57.672 34.615 0.00 0.00 41.98 2.32
2338 2601 6.336842 AGAGAGATCCAAACAACAAATTGG 57.663 37.500 0.00 0.00 46.03 3.16
2340 2603 3.652274 AGATCCAAACAACAAATTGGCG 58.348 40.909 0.00 0.00 44.63 5.69
2348 2611 1.680522 AACAAATTGGCGCACACCCA 61.681 50.000 10.83 0.00 0.00 4.51
2352 2615 1.805428 AATTGGCGCACACCCAAGAC 61.805 55.000 10.83 0.00 44.85 3.01
2360 2623 2.084546 GCACACCCAAGACCATCTAAC 58.915 52.381 0.00 0.00 0.00 2.34
2373 2636 5.044919 AGACCATCTAACACCAATTCCATGA 60.045 40.000 0.00 0.00 0.00 3.07
2389 2652 3.718434 TCCATGACAATTAGGGCATCTCT 59.282 43.478 0.00 0.00 0.00 3.10
2392 2655 6.044754 TCCATGACAATTAGGGCATCTCTAAT 59.955 38.462 0.00 0.00 38.60 1.73
2393 2656 6.150641 CCATGACAATTAGGGCATCTCTAATG 59.849 42.308 0.00 0.00 37.46 1.90
2395 2658 4.067896 ACAATTAGGGCATCTCTAATGCG 58.932 43.478 4.11 0.00 45.41 4.73
2396 2659 4.202357 ACAATTAGGGCATCTCTAATGCGA 60.202 41.667 4.11 0.00 45.41 5.10
2408 2671 4.003648 CTCTAATGCGAACCTTCAAACCT 58.996 43.478 0.00 0.00 0.00 3.50
2409 2672 4.000988 TCTAATGCGAACCTTCAAACCTC 58.999 43.478 0.00 0.00 0.00 3.85
2410 2673 1.534729 ATGCGAACCTTCAAACCTCC 58.465 50.000 0.00 0.00 0.00 4.30
2411 2674 0.536460 TGCGAACCTTCAAACCTCCC 60.536 55.000 0.00 0.00 0.00 4.30
2412 2675 0.250770 GCGAACCTTCAAACCTCCCT 60.251 55.000 0.00 0.00 0.00 4.20
2421 2684 3.662759 TCAAACCTCCCTCAAGTGTTT 57.337 42.857 0.00 0.00 0.00 2.83
2424 2687 0.478507 ACCTCCCTCAAGTGTTTGGG 59.521 55.000 0.00 0.00 40.95 4.12
2435 2698 2.032681 GTTTGGGCCGAGCTGTCT 59.967 61.111 0.00 0.00 0.00 3.41
2439 2702 4.459089 GGGCCGAGCTGTCTGGAC 62.459 72.222 0.00 0.00 0.00 4.02
2440 2703 3.695606 GGCCGAGCTGTCTGGACA 61.696 66.667 0.00 3.34 39.32 4.02
2452 2715 2.359850 TGGACACCGCAAGCCATC 60.360 61.111 0.00 0.00 0.00 3.51
2453 2716 3.134127 GGACACCGCAAGCCATCC 61.134 66.667 0.00 0.00 0.00 3.51
2456 2719 2.200170 GACACCGCAAGCCATCCAAC 62.200 60.000 0.00 0.00 0.00 3.77
2457 2720 2.115052 ACCGCAAGCCATCCAACA 59.885 55.556 0.00 0.00 0.00 3.33
2461 2724 1.236616 CGCAAGCCATCCAACAGTGA 61.237 55.000 0.00 0.00 0.00 3.41
2467 2730 0.110295 CCATCCAACAGTGACCCACA 59.890 55.000 0.00 0.00 36.74 4.17
2474 2737 2.951642 CAACAGTGACCCACATTTGTCT 59.048 45.455 0.00 0.00 36.74 3.41
2477 2740 2.951642 CAGTGACCCACATTTGTCTGTT 59.048 45.455 0.00 0.00 36.74 3.16
2479 2742 1.680735 TGACCCACATTTGTCTGTTGC 59.319 47.619 0.00 0.00 32.67 4.17
2481 2744 1.039068 CCCACATTTGTCTGTTGCCA 58.961 50.000 0.00 0.00 0.00 4.92
2483 2746 2.037511 CCCACATTTGTCTGTTGCCAAT 59.962 45.455 0.00 0.00 0.00 3.16
2484 2747 3.319755 CCACATTTGTCTGTTGCCAATC 58.680 45.455 0.00 0.00 0.00 2.67
2486 2749 2.964464 ACATTTGTCTGTTGCCAATCCA 59.036 40.909 0.00 0.00 0.00 3.41
2489 2752 0.478072 TGTCTGTTGCCAATCCAGGT 59.522 50.000 0.00 0.00 0.00 4.00
2492 2755 0.599558 CTGTTGCCAATCCAGGTGTG 59.400 55.000 0.00 0.00 0.00 3.82
2510 2773 1.030488 TGTCCGTTTTCCCGCAAACA 61.030 50.000 0.00 0.00 36.58 2.83
2536 2799 1.338011 ACAAAAGCATGGGGATTTGCG 60.338 47.619 0.00 0.00 34.82 4.85
2559 2823 0.034186 TACGGACACCCTCCACGTAT 60.034 55.000 0.00 0.00 39.39 3.06
2565 2829 1.688187 ACCCTCCACGTATGACCCC 60.688 63.158 0.00 0.00 0.00 4.95
2570 2834 1.153706 CCACGTATGACCCCGACAC 60.154 63.158 0.00 0.00 0.00 3.67
2635 2900 1.301087 CCGCACTGTTTCGGTACCA 60.301 57.895 13.54 0.00 40.72 3.25
2636 2901 0.881159 CCGCACTGTTTCGGTACCAA 60.881 55.000 13.54 2.62 40.72 3.67
2637 2902 0.233848 CGCACTGTTTCGGTACCAAC 59.766 55.000 13.54 10.34 0.00 3.77
2638 2903 0.589708 GCACTGTTTCGGTACCAACC 59.410 55.000 13.54 0.00 42.95 3.77
2639 2904 1.232119 CACTGTTTCGGTACCAACCC 58.768 55.000 13.54 0.00 43.54 4.11
2640 2905 0.109153 ACTGTTTCGGTACCAACCCC 59.891 55.000 13.54 0.00 43.54 4.95
2641 2906 0.607217 CTGTTTCGGTACCAACCCCC 60.607 60.000 13.54 0.00 43.54 5.40
2676 2941 2.171840 CTCTTTCTCAACCCTCTCCGA 58.828 52.381 0.00 0.00 0.00 4.55
2686 2951 1.251527 CCCTCTCCGATACCATCCCG 61.252 65.000 0.00 0.00 0.00 5.14
2694 2959 2.100879 GATACCATCCCGCCGCTCTT 62.101 60.000 0.00 0.00 0.00 2.85
2695 2960 2.100879 ATACCATCCCGCCGCTCTTC 62.101 60.000 0.00 0.00 0.00 2.87
2696 2961 4.918201 CCATCCCGCCGCTCTTCC 62.918 72.222 0.00 0.00 0.00 3.46
2711 2976 1.616930 TTCCACCCTAATCCCCGCA 60.617 57.895 0.00 0.00 0.00 5.69
2750 3015 2.633657 CGCCGCATTGAGCCATAC 59.366 61.111 0.00 0.00 41.38 2.39
2751 3016 2.633657 GCCGCATTGAGCCATACG 59.366 61.111 0.00 0.00 41.38 3.06
2752 3017 1.887242 GCCGCATTGAGCCATACGA 60.887 57.895 0.00 0.00 41.38 3.43
2754 3019 1.013596 CCGCATTGAGCCATACGAAA 58.986 50.000 0.00 0.00 41.38 3.46
2755 3020 1.603802 CCGCATTGAGCCATACGAAAT 59.396 47.619 0.00 0.00 41.38 2.17
2756 3021 2.602933 CCGCATTGAGCCATACGAAATG 60.603 50.000 0.00 0.00 41.38 2.32
2757 3022 2.388121 GCATTGAGCCATACGAAATGC 58.612 47.619 3.24 3.24 41.53 3.56
2758 3023 2.033801 GCATTGAGCCATACGAAATGCT 59.966 45.455 10.55 0.00 43.23 3.79
2759 3024 3.250762 GCATTGAGCCATACGAAATGCTA 59.749 43.478 10.55 0.00 43.23 3.49
2760 3025 4.776743 CATTGAGCCATACGAAATGCTAC 58.223 43.478 0.00 0.00 33.41 3.58
2761 3026 2.833794 TGAGCCATACGAAATGCTACC 58.166 47.619 0.00 0.00 33.41 3.18
2762 3027 2.143925 GAGCCATACGAAATGCTACCC 58.856 52.381 0.00 0.00 33.41 3.69
2767 3032 3.309388 CATACGAAATGCTACCCGAGAG 58.691 50.000 0.00 0.00 0.00 3.20
2774 3039 0.898326 TGCTACCCGAGAGTGCAGAA 60.898 55.000 0.00 0.00 0.00 3.02
2803 3068 2.357034 GACAAAGGCGGTCGCTCA 60.357 61.111 15.04 0.00 41.60 4.26
2806 3071 1.082104 CAAAGGCGGTCGCTCAAAC 60.082 57.895 15.04 0.00 41.60 2.93
2825 3090 2.737467 CGATAAACTCGGCAACATGG 57.263 50.000 0.00 0.00 43.82 3.66
2826 3091 2.276201 CGATAAACTCGGCAACATGGA 58.724 47.619 0.00 0.00 43.82 3.41
2833 3098 1.442520 CGGCAACATGGAAAGCACG 60.443 57.895 0.00 0.00 0.00 5.34
2836 3101 1.659233 CAACATGGAAAGCACGCCA 59.341 52.632 0.00 0.00 38.78 5.69
2861 3126 1.463674 AACATAAGGCAAAGGAGGCG 58.536 50.000 0.00 0.00 39.37 5.52
2879 3144 1.080501 GCCGCTCAAAAAGAAGGGC 60.081 57.895 0.00 0.00 37.46 5.19
2882 3147 1.586541 GCTCAAAAAGAAGGGCGGG 59.413 57.895 0.00 0.00 0.00 6.13
2883 3148 1.586541 CTCAAAAAGAAGGGCGGGC 59.413 57.895 0.00 0.00 0.00 6.13
2885 3150 2.989253 AAAAAGAAGGGCGGGCGG 60.989 61.111 0.00 0.00 0.00 6.13
2886 3151 3.501040 AAAAAGAAGGGCGGGCGGA 62.501 57.895 0.00 0.00 0.00 5.54
2887 3152 4.717313 AAAGAAGGGCGGGCGGAC 62.717 66.667 0.00 0.00 0.00 4.79
2900 3165 3.788145 CGGACGGGGTTGGGCATA 61.788 66.667 0.00 0.00 0.00 3.14
2901 3166 2.192175 GGACGGGGTTGGGCATAG 59.808 66.667 0.00 0.00 0.00 2.23
2902 3167 2.676265 GGACGGGGTTGGGCATAGT 61.676 63.158 0.00 0.00 0.00 2.12
2903 3168 1.339644 GGACGGGGTTGGGCATAGTA 61.340 60.000 0.00 0.00 0.00 1.82
2904 3169 0.763035 GACGGGGTTGGGCATAGTAT 59.237 55.000 0.00 0.00 0.00 2.12
2905 3170 1.972795 GACGGGGTTGGGCATAGTATA 59.027 52.381 0.00 0.00 0.00 1.47
2906 3171 1.975680 ACGGGGTTGGGCATAGTATAG 59.024 52.381 0.00 0.00 0.00 1.31
2907 3172 1.278127 CGGGGTTGGGCATAGTATAGG 59.722 57.143 0.00 0.00 0.00 2.57
2908 3173 1.633945 GGGGTTGGGCATAGTATAGGG 59.366 57.143 0.00 0.00 0.00 3.53
2909 3174 1.633945 GGGTTGGGCATAGTATAGGGG 59.366 57.143 0.00 0.00 0.00 4.79
2910 3175 1.633945 GGTTGGGCATAGTATAGGGGG 59.366 57.143 0.00 0.00 0.00 5.40
2934 3199 3.400054 GTGGCCCGCCTAGAGGTT 61.400 66.667 7.35 0.00 37.57 3.50
2935 3200 2.609610 TGGCCCGCCTAGAGGTTT 60.610 61.111 7.35 0.00 37.57 3.27
2936 3201 1.306312 TGGCCCGCCTAGAGGTTTA 60.306 57.895 7.35 0.00 37.57 2.01
2937 3202 0.910566 TGGCCCGCCTAGAGGTTTAA 60.911 55.000 7.35 0.00 37.57 1.52
2938 3203 0.463295 GGCCCGCCTAGAGGTTTAAC 60.463 60.000 0.00 0.00 37.57 2.01
2939 3204 0.251073 GCCCGCCTAGAGGTTTAACA 59.749 55.000 0.00 0.00 37.57 2.41
2940 3205 1.134189 GCCCGCCTAGAGGTTTAACAT 60.134 52.381 0.00 0.00 37.57 2.71
2941 3206 2.835027 CCCGCCTAGAGGTTTAACATC 58.165 52.381 1.13 1.13 37.57 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.116026 ACTGTTTAACATTTGAAGGAGGGATAT 58.884 33.333 0.00 0.00 0.00 1.63
2 3 6.209391 CACTGTTTAACATTTGAAGGAGGGAT 59.791 38.462 0.00 0.00 0.00 3.85
4 5 5.278957 CCACTGTTTAACATTTGAAGGAGGG 60.279 44.000 0.00 0.00 0.00 4.30
5 6 5.772521 CCACTGTTTAACATTTGAAGGAGG 58.227 41.667 0.00 0.00 0.00 4.30
6 7 5.222631 GCCACTGTTTAACATTTGAAGGAG 58.777 41.667 0.00 0.00 0.00 3.69
7 8 4.038642 GGCCACTGTTTAACATTTGAAGGA 59.961 41.667 0.00 0.00 0.00 3.36
8 9 4.202202 TGGCCACTGTTTAACATTTGAAGG 60.202 41.667 0.00 0.00 0.00 3.46
9 10 4.942852 TGGCCACTGTTTAACATTTGAAG 58.057 39.130 0.00 0.00 0.00 3.02
10 11 5.295950 CATGGCCACTGTTTAACATTTGAA 58.704 37.500 8.16 0.00 0.00 2.69
11 12 4.798924 GCATGGCCACTGTTTAACATTTGA 60.799 41.667 8.16 0.00 0.00 2.69
12 13 3.432933 GCATGGCCACTGTTTAACATTTG 59.567 43.478 8.16 0.00 0.00 2.32
13 14 3.070734 TGCATGGCCACTGTTTAACATTT 59.929 39.130 8.16 0.00 0.00 2.32
14 15 2.632028 TGCATGGCCACTGTTTAACATT 59.368 40.909 8.16 0.00 0.00 2.71
15 16 2.246469 TGCATGGCCACTGTTTAACAT 58.754 42.857 8.16 0.00 0.00 2.71
16 17 1.697284 TGCATGGCCACTGTTTAACA 58.303 45.000 8.16 0.00 0.00 2.41
17 18 2.810439 TTGCATGGCCACTGTTTAAC 57.190 45.000 8.16 0.00 0.00 2.01
18 19 2.896044 TGATTGCATGGCCACTGTTTAA 59.104 40.909 8.16 5.95 0.00 1.52
19 20 2.492881 CTGATTGCATGGCCACTGTTTA 59.507 45.455 8.16 0.00 0.00 2.01
20 21 1.274167 CTGATTGCATGGCCACTGTTT 59.726 47.619 8.16 0.00 0.00 2.83
21 22 0.892755 CTGATTGCATGGCCACTGTT 59.107 50.000 8.16 0.00 0.00 3.16
22 23 0.251474 ACTGATTGCATGGCCACTGT 60.251 50.000 8.16 0.77 0.00 3.55
23 24 0.172578 CACTGATTGCATGGCCACTG 59.827 55.000 8.16 9.35 0.00 3.66
24 25 0.968901 CCACTGATTGCATGGCCACT 60.969 55.000 8.16 0.00 0.00 4.00
25 26 1.514087 CCACTGATTGCATGGCCAC 59.486 57.895 8.16 0.00 0.00 5.01
26 27 4.021559 CCACTGATTGCATGGCCA 57.978 55.556 8.56 8.56 0.00 5.36
29 30 0.968901 AGTGGCCACTGATTGCATGG 60.969 55.000 37.39 0.00 40.75 3.66
30 31 0.892755 AAGTGGCCACTGATTGCATG 59.107 50.000 38.35 0.00 41.58 4.06
31 32 1.274167 CAAAGTGGCCACTGATTGCAT 59.726 47.619 38.35 18.72 41.58 3.96
32 33 0.675083 CAAAGTGGCCACTGATTGCA 59.325 50.000 38.35 0.00 41.58 4.08
33 34 0.675633 ACAAAGTGGCCACTGATTGC 59.324 50.000 34.93 13.55 41.58 3.56
34 35 2.624838 AGAACAAAGTGGCCACTGATTG 59.375 45.455 38.35 35.74 41.58 2.67
35 36 2.949447 AGAACAAAGTGGCCACTGATT 58.051 42.857 38.35 29.47 41.58 2.57
36 37 2.624838 CAAGAACAAAGTGGCCACTGAT 59.375 45.455 38.35 26.70 41.58 2.90
37 38 2.023673 CAAGAACAAAGTGGCCACTGA 58.976 47.619 38.35 0.00 41.58 3.41
38 39 1.067516 CCAAGAACAAAGTGGCCACTG 59.932 52.381 38.35 28.66 41.58 3.66
39 40 1.402787 CCAAGAACAAAGTGGCCACT 58.597 50.000 33.20 33.20 44.94 4.00
40 41 0.389025 CCCAAGAACAAAGTGGCCAC 59.611 55.000 29.22 29.22 0.00 5.01
41 42 0.758685 CCCCAAGAACAAAGTGGCCA 60.759 55.000 0.00 0.00 0.00 5.36
42 43 1.471829 CCCCCAAGAACAAAGTGGCC 61.472 60.000 0.00 0.00 0.00 5.36
43 44 0.469144 TCCCCCAAGAACAAAGTGGC 60.469 55.000 0.00 0.00 0.00 5.01
44 45 2.080654 TTCCCCCAAGAACAAAGTGG 57.919 50.000 0.00 0.00 0.00 4.00
45 46 3.006859 GGAATTCCCCCAAGAACAAAGTG 59.993 47.826 14.03 0.00 0.00 3.16
46 47 3.239449 GGAATTCCCCCAAGAACAAAGT 58.761 45.455 14.03 0.00 0.00 2.66
47 48 3.238597 TGGAATTCCCCCAAGAACAAAG 58.761 45.455 21.90 0.00 34.29 2.77
48 49 3.238597 CTGGAATTCCCCCAAGAACAAA 58.761 45.455 21.90 0.00 32.53 2.83
49 50 2.492567 CCTGGAATTCCCCCAAGAACAA 60.493 50.000 21.90 0.00 32.53 2.83
50 51 1.077005 CCTGGAATTCCCCCAAGAACA 59.923 52.381 21.90 0.00 32.53 3.18
51 52 1.357761 TCCTGGAATTCCCCCAAGAAC 59.642 52.381 21.90 0.00 32.53 3.01
52 53 1.357761 GTCCTGGAATTCCCCCAAGAA 59.642 52.381 21.90 0.00 32.53 2.52
53 54 0.999712 GTCCTGGAATTCCCCCAAGA 59.000 55.000 21.90 8.27 32.53 3.02
54 55 1.002857 AGTCCTGGAATTCCCCCAAG 58.997 55.000 21.90 11.88 32.53 3.61
59 60 4.855340 TGTCATTAAGTCCTGGAATTCCC 58.145 43.478 21.90 6.20 34.29 3.97
141 142 0.109723 TAAGTGTCCCAGCCCAACAC 59.890 55.000 0.00 0.00 42.80 3.32
143 144 2.215942 ATTAAGTGTCCCAGCCCAAC 57.784 50.000 0.00 0.00 0.00 3.77
197 205 2.618045 CGTTTACATGGCTCCCCTCTTT 60.618 50.000 0.00 0.00 0.00 2.52
198 206 1.065418 CGTTTACATGGCTCCCCTCTT 60.065 52.381 0.00 0.00 0.00 2.85
199 207 0.541863 CGTTTACATGGCTCCCCTCT 59.458 55.000 0.00 0.00 0.00 3.69
200 208 0.463833 CCGTTTACATGGCTCCCCTC 60.464 60.000 0.00 0.00 0.00 4.30
201 209 1.205460 ACCGTTTACATGGCTCCCCT 61.205 55.000 0.00 0.00 31.07 4.79
202 210 0.542805 TACCGTTTACATGGCTCCCC 59.457 55.000 0.00 0.00 31.07 4.81
203 211 1.949465 CTACCGTTTACATGGCTCCC 58.051 55.000 0.00 0.00 31.07 4.30
204 212 1.134491 AGCTACCGTTTACATGGCTCC 60.134 52.381 0.00 0.00 31.07 4.70
205 213 2.202566 GAGCTACCGTTTACATGGCTC 58.797 52.381 0.00 0.00 38.00 4.70
206 214 1.134491 GGAGCTACCGTTTACATGGCT 60.134 52.381 0.00 0.00 31.07 4.75
207 215 1.134491 AGGAGCTACCGTTTACATGGC 60.134 52.381 0.00 0.00 44.74 4.40
208 216 2.981859 AGGAGCTACCGTTTACATGG 57.018 50.000 0.00 0.00 44.74 3.66
209 217 5.221263 ACAGATAGGAGCTACCGTTTACATG 60.221 44.000 0.00 0.00 44.74 3.21
210 218 4.894114 ACAGATAGGAGCTACCGTTTACAT 59.106 41.667 0.00 0.00 44.74 2.29
211 219 4.097437 CACAGATAGGAGCTACCGTTTACA 59.903 45.833 0.00 0.00 44.74 2.41
212 220 4.337555 TCACAGATAGGAGCTACCGTTTAC 59.662 45.833 0.00 0.00 44.74 2.01
213 221 4.337555 GTCACAGATAGGAGCTACCGTTTA 59.662 45.833 0.00 0.00 44.74 2.01
214 222 3.130693 GTCACAGATAGGAGCTACCGTTT 59.869 47.826 0.00 0.00 44.74 3.60
215 223 2.688958 GTCACAGATAGGAGCTACCGTT 59.311 50.000 0.00 0.00 44.74 4.44
216 224 2.299521 GTCACAGATAGGAGCTACCGT 58.700 52.381 0.00 0.00 44.74 4.83
217 225 2.292016 CTGTCACAGATAGGAGCTACCG 59.708 54.545 0.00 0.00 37.42 4.02
218 226 3.556999 TCTGTCACAGATAGGAGCTACC 58.443 50.000 2.36 0.00 35.39 3.18
230 238 2.401766 GGCCGCCAATCTGTCACAG 61.402 63.158 3.91 0.00 0.00 3.66
233 241 3.247056 TTCGGCCGCCAATCTGTCA 62.247 57.895 23.51 0.00 0.00 3.58
235 243 2.746277 GTTCGGCCGCCAATCTGT 60.746 61.111 23.51 0.00 0.00 3.41
249 257 0.925466 AGTAACGTGTGTGTGCGTTC 59.075 50.000 5.60 0.00 46.53 3.95
276 284 0.167251 CATACCGGACGTTTTGCCAC 59.833 55.000 9.46 0.00 0.00 5.01
279 287 0.167251 CCACATACCGGACGTTTTGC 59.833 55.000 9.46 0.00 0.00 3.68
284 292 2.192605 GGTACCACATACCGGACGT 58.807 57.895 9.46 0.00 44.20 4.34
290 298 6.210980 AGTATCCACTACGGTACCACATACC 61.211 48.000 13.54 0.00 40.90 2.73
293 301 3.635373 CAGTATCCACTACGGTACCACAT 59.365 47.826 13.54 0.00 35.35 3.21
297 305 3.251972 GCTACAGTATCCACTACGGTACC 59.748 52.174 0.16 0.16 39.18 3.34
302 310 3.789756 CGTTTGCTACAGTATCCACTACG 59.210 47.826 0.00 0.00 35.35 3.51
320 328 7.513371 TTCACAAAATTATCCACTACCGTTT 57.487 32.000 0.00 0.00 0.00 3.60
391 399 9.989394 GTTCGCACTTTTCAAAATATTTTAGAC 57.011 29.630 12.98 5.12 0.00 2.59
392 400 9.737427 TGTTCGCACTTTTCAAAATATTTTAGA 57.263 25.926 12.98 10.16 0.00 2.10
441 449 8.170061 TCCCAAGAATATTCCTCTTTTCAGAAA 58.830 33.333 11.92 0.00 30.58 2.52
451 459 9.755804 GATTCAATTTTCCCAAGAATATTCCTC 57.244 33.333 11.92 0.00 33.12 3.71
480 488 4.425520 AGAAAAATGTTCGCGGTCAAAAA 58.574 34.783 6.13 0.00 0.00 1.94
481 489 4.035278 AGAAAAATGTTCGCGGTCAAAA 57.965 36.364 6.13 0.00 0.00 2.44
485 493 6.684609 AAATAAAGAAAAATGTTCGCGGTC 57.315 33.333 6.13 0.00 0.00 4.79
486 494 7.471657 AAAAATAAAGAAAAATGTTCGCGGT 57.528 28.000 6.13 0.00 0.00 5.68
520 530 9.639563 AAATGGTTTCATAAAATGTTCCCTTTT 57.360 25.926 0.00 0.00 32.44 2.27
521 531 9.639563 AAAATGGTTTCATAAAATGTTCCCTTT 57.360 25.926 0.00 0.00 32.44 3.11
522 532 9.639563 AAAAATGGTTTCATAAAATGTTCCCTT 57.360 25.926 0.00 0.00 32.44 3.95
595 612 6.516718 TGCCGTTCTTCAATTTTAATTGGAA 58.483 32.000 13.57 8.41 44.51 3.53
597 614 6.201806 TGTTGCCGTTCTTCAATTTTAATTGG 59.798 34.615 13.57 1.52 44.51 3.16
602 619 7.778470 AAAATGTTGCCGTTCTTCAATTTTA 57.222 28.000 0.00 0.00 0.00 1.52
640 658 4.510038 AATGCTCGCATCTTCAAACTTT 57.490 36.364 4.68 0.00 35.31 2.66
651 669 1.825090 TGGTCAGAAAATGCTCGCAT 58.175 45.000 0.00 0.00 38.46 4.73
784 828 2.509336 GGTCGCGTGGAGGACATG 60.509 66.667 5.77 0.00 39.17 3.21
825 869 1.766496 AGTCGGAGTCACCCTCAAAAA 59.234 47.619 0.00 0.00 42.40 1.94
826 870 1.343465 GAGTCGGAGTCACCCTCAAAA 59.657 52.381 7.96 0.00 42.40 2.44
827 871 0.966920 GAGTCGGAGTCACCCTCAAA 59.033 55.000 7.96 0.00 42.40 2.69
828 872 0.898789 GGAGTCGGAGTCACCCTCAA 60.899 60.000 14.42 0.00 42.40 3.02
829 873 1.304217 GGAGTCGGAGTCACCCTCA 60.304 63.158 14.42 0.00 42.40 3.86
830 874 0.898789 TTGGAGTCGGAGTCACCCTC 60.899 60.000 14.42 0.00 39.67 4.30
831 875 0.252284 ATTGGAGTCGGAGTCACCCT 60.252 55.000 14.42 0.00 34.64 4.34
832 876 0.613777 AATTGGAGTCGGAGTCACCC 59.386 55.000 14.42 0.00 34.64 4.61
833 877 1.275291 TGAATTGGAGTCGGAGTCACC 59.725 52.381 14.42 0.00 0.00 4.02
834 878 2.028930 ACTGAATTGGAGTCGGAGTCAC 60.029 50.000 14.42 5.05 0.00 3.67
835 879 2.231478 GACTGAATTGGAGTCGGAGTCA 59.769 50.000 14.42 0.00 31.01 3.41
836 880 2.494073 AGACTGAATTGGAGTCGGAGTC 59.506 50.000 4.18 4.18 43.95 3.36
837 881 2.232452 CAGACTGAATTGGAGTCGGAGT 59.768 50.000 0.00 0.00 43.95 3.85
838 882 2.886081 CAGACTGAATTGGAGTCGGAG 58.114 52.381 0.00 1.48 43.95 4.63
839 883 1.066858 GCAGACTGAATTGGAGTCGGA 60.067 52.381 6.65 0.00 43.95 4.55
840 884 1.363744 GCAGACTGAATTGGAGTCGG 58.636 55.000 6.65 8.96 43.95 4.79
841 885 1.363744 GGCAGACTGAATTGGAGTCG 58.636 55.000 6.65 5.62 43.95 4.18
842 886 1.003580 TGGGCAGACTGAATTGGAGTC 59.996 52.381 6.65 6.21 40.25 3.36
843 887 1.004044 CTGGGCAGACTGAATTGGAGT 59.996 52.381 6.65 0.00 0.00 3.85
844 888 1.747709 CTGGGCAGACTGAATTGGAG 58.252 55.000 6.65 0.00 0.00 3.86
845 889 0.322816 GCTGGGCAGACTGAATTGGA 60.323 55.000 6.65 0.00 0.00 3.53
846 890 1.651240 CGCTGGGCAGACTGAATTGG 61.651 60.000 6.65 0.00 0.00 3.16
847 891 1.798735 CGCTGGGCAGACTGAATTG 59.201 57.895 6.65 0.00 0.00 2.32
848 892 2.042831 GCGCTGGGCAGACTGAATT 61.043 57.895 12.19 0.00 42.87 2.17
849 893 2.437359 GCGCTGGGCAGACTGAAT 60.437 61.111 12.19 0.00 42.87 2.57
850 894 4.704833 GGCGCTGGGCAGACTGAA 62.705 66.667 18.70 0.00 46.16 3.02
866 910 4.823419 TATGAACGCACGGGCCGG 62.823 66.667 31.78 19.86 36.38 6.13
867 911 2.392181 TTTATGAACGCACGGGCCG 61.392 57.895 27.06 27.06 36.38 6.13
868 912 1.135939 GTTTATGAACGCACGGGCC 59.864 57.895 2.82 0.00 36.38 5.80
888 932 1.302383 TTTATGAACGCGGCTGGGTG 61.302 55.000 16.92 0.00 41.67 4.61
890 934 1.427819 GTTTATGAACGCGGCTGGG 59.572 57.895 12.47 8.27 0.00 4.45
899 943 4.156008 AGGAATCAAGGCACGTTTATGAAC 59.844 41.667 0.00 0.00 0.00 3.18
900 944 4.331968 AGGAATCAAGGCACGTTTATGAA 58.668 39.130 0.00 0.00 0.00 2.57
902 946 4.414852 CAAGGAATCAAGGCACGTTTATG 58.585 43.478 0.00 0.00 0.00 1.90
903 947 3.119495 GCAAGGAATCAAGGCACGTTTAT 60.119 43.478 0.00 0.00 0.00 1.40
905 949 1.000274 GCAAGGAATCAAGGCACGTTT 60.000 47.619 0.00 0.00 0.00 3.60
906 950 0.598065 GCAAGGAATCAAGGCACGTT 59.402 50.000 0.00 0.00 0.00 3.99
915 959 2.237143 CAGGACAGGTAGCAAGGAATCA 59.763 50.000 0.00 0.00 0.00 2.57
923 967 2.351244 CGGAGCAGGACAGGTAGCA 61.351 63.158 0.00 0.00 0.00 3.49
924 968 2.496817 CGGAGCAGGACAGGTAGC 59.503 66.667 0.00 0.00 0.00 3.58
937 981 0.390472 AGAAGAAAGAAGGCGCGGAG 60.390 55.000 8.83 0.00 0.00 4.63
938 982 0.034896 AAGAAGAAAGAAGGCGCGGA 59.965 50.000 8.83 0.00 0.00 5.54
939 983 0.444260 GAAGAAGAAAGAAGGCGCGG 59.556 55.000 8.83 0.00 0.00 6.46
940 984 1.127582 CTGAAGAAGAAAGAAGGCGCG 59.872 52.381 0.00 0.00 0.00 6.86
941 985 1.135831 GCTGAAGAAGAAAGAAGGCGC 60.136 52.381 0.00 0.00 0.00 6.53
942 986 1.466558 GGCTGAAGAAGAAAGAAGGCG 59.533 52.381 0.00 0.00 0.00 5.52
943 987 1.466558 CGGCTGAAGAAGAAAGAAGGC 59.533 52.381 0.00 0.00 0.00 4.35
944 988 2.739379 GACGGCTGAAGAAGAAAGAAGG 59.261 50.000 0.00 0.00 0.00 3.46
945 989 2.739379 GGACGGCTGAAGAAGAAAGAAG 59.261 50.000 0.00 0.00 0.00 2.85
975 1019 1.498865 CCGCCGAATCTGTGTATGCC 61.499 60.000 0.00 0.00 0.00 4.40
1075 1119 0.950555 TTGTGCTCGACTGTGATGGC 60.951 55.000 0.00 0.00 0.00 4.40
1127 1171 0.900182 TGACAGGATCAGGTCGCTGT 60.900 55.000 10.32 4.88 39.50 4.40
1388 1432 4.233635 CCTCGCGGACGTACTCGG 62.234 72.222 10.74 0.99 41.85 4.63
1525 1578 3.127533 GGCCTCTTTGCACGCGAT 61.128 61.111 15.93 0.00 0.00 4.58
1555 1608 1.457079 CCCCGGTATCCTCGGTCTT 60.457 63.158 0.00 0.00 45.51 3.01
1556 1609 2.197875 CCCCGGTATCCTCGGTCT 59.802 66.667 0.00 0.00 45.51 3.85
1559 1612 3.303928 GAGCCCCGGTATCCTCGG 61.304 72.222 0.00 0.00 46.43 4.63
1560 1613 3.303928 GGAGCCCCGGTATCCTCG 61.304 72.222 0.00 0.00 0.00 4.63
1686 1748 2.669569 CACCCACTGTGGAAGGCG 60.670 66.667 27.94 12.99 40.96 5.52
1918 2010 2.685106 ATATCCAGCTCCTCTTCCGA 57.315 50.000 0.00 0.00 0.00 4.55
1920 2012 4.141959 GCTCATATATCCAGCTCCTCTTCC 60.142 50.000 6.08 0.00 0.00 3.46
1929 2021 4.892433 ACTGTTCTGCTCATATATCCAGC 58.108 43.478 6.32 6.32 0.00 4.85
1930 2022 5.477510 GGACTGTTCTGCTCATATATCCAG 58.522 45.833 0.00 0.00 0.00 3.86
1931 2023 4.021981 CGGACTGTTCTGCTCATATATCCA 60.022 45.833 0.00 0.00 0.00 3.41
1963 2095 3.995048 CGATCTCATGATGGATTCAGTGG 59.005 47.826 0.00 0.00 37.89 4.00
2001 2133 3.487209 GCCACTGCAAAACAAATGTTTGG 60.487 43.478 11.94 10.26 46.47 3.28
2019 2162 4.260334 GCTTGACAAGAAACAATTTGCCAC 60.260 41.667 19.51 0.00 0.00 5.01
2058 2202 2.425539 CATGCTTCCCCGCAAATTTTT 58.574 42.857 0.00 0.00 44.06 1.94
2059 2203 1.945355 GCATGCTTCCCCGCAAATTTT 60.945 47.619 11.37 0.00 44.06 1.82
2060 2204 0.391528 GCATGCTTCCCCGCAAATTT 60.392 50.000 11.37 0.00 44.06 1.82
2061 2205 1.218854 GCATGCTTCCCCGCAAATT 59.781 52.632 11.37 0.00 44.06 1.82
2062 2206 1.543065 TTGCATGCTTCCCCGCAAAT 61.543 50.000 20.33 0.00 44.06 2.32
2063 2207 2.205843 TTGCATGCTTCCCCGCAAA 61.206 52.632 20.33 0.00 44.06 3.68
2064 2208 1.543065 ATTTGCATGCTTCCCCGCAA 61.543 50.000 20.33 0.00 44.06 4.85
2065 2209 0.682532 TATTTGCATGCTTCCCCGCA 60.683 50.000 20.33 0.00 45.10 5.69
2066 2210 0.675633 ATATTTGCATGCTTCCCCGC 59.324 50.000 20.33 0.00 0.00 6.13
2067 2211 2.884012 TGTATATTTGCATGCTTCCCCG 59.116 45.455 20.33 0.00 0.00 5.73
2068 2212 4.281688 ACATGTATATTTGCATGCTTCCCC 59.718 41.667 20.33 1.55 46.39 4.81
2069 2213 5.458041 ACATGTATATTTGCATGCTTCCC 57.542 39.130 20.33 1.03 46.39 3.97
2070 2214 7.206981 ACTACATGTATATTTGCATGCTTCC 57.793 36.000 20.33 0.48 46.39 3.46
2086 2230 8.717821 GTGTTTGTGTGACAATATACTACATGT 58.282 33.333 2.69 2.69 38.00 3.21
2109 2253 5.012239 AGCTGGTATGAAATTGACATGTGT 58.988 37.500 1.15 0.00 0.00 3.72
2143 2287 1.410153 CCATGGCAAAAGGGTCATAGC 59.590 52.381 0.00 0.00 30.56 2.97
2144 2288 2.954318 CTCCATGGCAAAAGGGTCATAG 59.046 50.000 6.96 0.00 30.56 2.23
2145 2289 2.580322 TCTCCATGGCAAAAGGGTCATA 59.420 45.455 6.96 0.00 30.56 2.15
2146 2290 1.358787 TCTCCATGGCAAAAGGGTCAT 59.641 47.619 6.96 0.00 32.20 3.06
2160 2304 7.429374 AATCGTCATGTATATCCATCTCCAT 57.571 36.000 0.00 0.00 0.00 3.41
2181 2325 6.539649 TGCCACGCAGATAATACTAAAATC 57.460 37.500 0.00 0.00 33.32 2.17
2221 2365 7.538334 GCCATCACAATTTTCTTTAAAAATGCC 59.462 33.333 0.00 0.00 38.50 4.40
2222 2366 8.074972 TGCCATCACAATTTTCTTTAAAAATGC 58.925 29.630 0.00 0.00 38.50 3.56
2223 2367 9.947669 TTGCCATCACAATTTTCTTTAAAAATG 57.052 25.926 0.00 0.00 40.05 2.32
2232 2430 7.884354 ACCATATTTTTGCCATCACAATTTTCT 59.116 29.630 0.00 0.00 0.00 2.52
2233 2431 8.042944 ACCATATTTTTGCCATCACAATTTTC 57.957 30.769 0.00 0.00 0.00 2.29
2278 2478 6.072175 GGAATCATGTGCAGTGTAGGTAAAAA 60.072 38.462 0.00 0.00 0.00 1.94
2283 2483 2.305635 TGGAATCATGTGCAGTGTAGGT 59.694 45.455 0.00 0.00 0.00 3.08
2285 2485 3.603532 AGTGGAATCATGTGCAGTGTAG 58.396 45.455 0.00 0.00 0.00 2.74
2286 2486 3.701205 AGTGGAATCATGTGCAGTGTA 57.299 42.857 0.00 0.00 0.00 2.90
2287 2487 2.555325 CAAGTGGAATCATGTGCAGTGT 59.445 45.455 0.00 0.00 0.00 3.55
2288 2488 2.555325 ACAAGTGGAATCATGTGCAGTG 59.445 45.455 0.00 0.00 0.00 3.66
2289 2489 2.867624 ACAAGTGGAATCATGTGCAGT 58.132 42.857 0.00 0.00 0.00 4.40
2290 2490 3.928727 AACAAGTGGAATCATGTGCAG 57.071 42.857 0.00 0.00 0.00 4.41
2291 2491 4.341806 AGAAAACAAGTGGAATCATGTGCA 59.658 37.500 0.00 0.00 0.00 4.57
2292 2492 4.874970 AGAAAACAAGTGGAATCATGTGC 58.125 39.130 0.00 0.00 0.00 4.57
2293 2493 7.388776 TCTCTAGAAAACAAGTGGAATCATGTG 59.611 37.037 0.00 0.00 0.00 3.21
2294 2494 7.453393 TCTCTAGAAAACAAGTGGAATCATGT 58.547 34.615 0.00 0.00 0.00 3.21
2302 2532 6.042638 TGGATCTCTCTAGAAAACAAGTGG 57.957 41.667 0.00 0.00 34.73 4.00
2307 2537 7.279615 TGTTGTTTGGATCTCTCTAGAAAACA 58.720 34.615 10.97 10.97 37.82 2.83
2337 2600 4.947147 TGGTCTTGGGTGTGCGCC 62.947 66.667 4.18 0.00 0.00 6.53
2338 2601 2.672996 ATGGTCTTGGGTGTGCGC 60.673 61.111 0.00 0.00 0.00 6.09
2340 2603 2.084546 GTTAGATGGTCTTGGGTGTGC 58.915 52.381 0.00 0.00 0.00 4.57
2348 2611 5.255397 TGGAATTGGTGTTAGATGGTCTT 57.745 39.130 0.00 0.00 0.00 3.01
2352 2615 4.949238 TGTCATGGAATTGGTGTTAGATGG 59.051 41.667 0.00 0.00 0.00 3.51
2360 2623 4.441913 GCCCTAATTGTCATGGAATTGGTG 60.442 45.833 11.69 4.24 0.00 4.17
2373 2636 4.067896 CGCATTAGAGATGCCCTAATTGT 58.932 43.478 5.51 0.00 41.71 2.71
2389 2652 3.078837 GGAGGTTTGAAGGTTCGCATTA 58.921 45.455 0.00 0.00 0.00 1.90
2392 2655 0.536460 GGGAGGTTTGAAGGTTCGCA 60.536 55.000 0.00 0.00 0.00 5.10
2393 2656 0.250770 AGGGAGGTTTGAAGGTTCGC 60.251 55.000 0.00 0.00 0.00 4.70
2395 2658 2.951229 TGAGGGAGGTTTGAAGGTTC 57.049 50.000 0.00 0.00 0.00 3.62
2396 2659 2.514160 ACTTGAGGGAGGTTTGAAGGTT 59.486 45.455 0.00 0.00 0.00 3.50
2408 2671 1.152830 GGCCCAAACACTTGAGGGA 59.847 57.895 0.00 0.00 44.30 4.20
2409 2672 2.268076 CGGCCCAAACACTTGAGGG 61.268 63.158 0.00 0.00 44.37 4.30
2410 2673 1.228124 TCGGCCCAAACACTTGAGG 60.228 57.895 0.00 0.00 34.14 3.86
2411 2674 1.856265 GCTCGGCCCAAACACTTGAG 61.856 60.000 0.00 0.00 34.14 3.02
2412 2675 1.896660 GCTCGGCCCAAACACTTGA 60.897 57.895 0.00 0.00 34.14 3.02
2424 2687 2.433318 GTGTCCAGACAGCTCGGC 60.433 66.667 0.00 0.00 42.74 5.54
2435 2698 2.359850 GATGGCTTGCGGTGTCCA 60.360 61.111 0.00 0.00 0.00 4.02
2439 2702 2.203972 CTGTTGGATGGCTTGCGGTG 62.204 60.000 0.00 0.00 0.00 4.94
2440 2703 1.973281 CTGTTGGATGGCTTGCGGT 60.973 57.895 0.00 0.00 0.00 5.68
2452 2715 2.031120 ACAAATGTGGGTCACTGTTGG 58.969 47.619 14.10 5.18 35.09 3.77
2453 2716 2.951642 AGACAAATGTGGGTCACTGTTG 59.048 45.455 0.00 10.46 36.50 3.33
2456 2719 2.575532 ACAGACAAATGTGGGTCACTG 58.424 47.619 0.00 0.00 36.50 3.66
2457 2720 2.951642 CAACAGACAAATGTGGGTCACT 59.048 45.455 0.00 0.00 36.50 3.41
2461 2724 1.039856 GGCAACAGACAAATGTGGGT 58.960 50.000 0.00 0.00 32.52 4.51
2477 2740 1.074775 GGACACACCTGGATTGGCA 59.925 57.895 0.00 0.00 35.41 4.92
2479 2742 0.250727 AACGGACACACCTGGATTGG 60.251 55.000 0.00 0.00 36.31 3.16
2481 2744 2.227194 GAAAACGGACACACCTGGATT 58.773 47.619 0.00 0.00 36.31 3.01
2483 2746 0.179040 GGAAAACGGACACACCTGGA 60.179 55.000 0.00 0.00 36.31 3.86
2484 2747 1.170290 GGGAAAACGGACACACCTGG 61.170 60.000 0.00 0.00 36.31 4.45
2486 2749 1.227734 CGGGAAAACGGACACACCT 60.228 57.895 0.00 0.00 36.31 4.00
2489 2752 1.030488 TTTGCGGGAAAACGGACACA 61.030 50.000 0.00 0.00 32.76 3.72
2492 2755 0.100861 TTGTTTGCGGGAAAACGGAC 59.899 50.000 0.00 0.00 41.92 4.79
2516 2779 1.338011 CGCAAATCCCCATGCTTTTGT 60.338 47.619 0.00 0.00 40.39 2.83
2517 2780 1.361793 CGCAAATCCCCATGCTTTTG 58.638 50.000 0.00 0.00 40.39 2.44
2522 2785 2.920076 TACCCCGCAAATCCCCATGC 62.920 60.000 0.00 0.00 39.17 4.06
2525 2788 2.678470 GTACCCCGCAAATCCCCA 59.322 61.111 0.00 0.00 0.00 4.96
2530 2793 1.376295 GTGTCCGTACCCCGCAAAT 60.376 57.895 0.00 0.00 34.38 2.32
2559 2823 3.326578 CCATGGGTGTCGGGGTCA 61.327 66.667 2.85 0.00 0.00 4.02
2565 2829 2.046314 GGTGGACCATGGGTGTCG 60.046 66.667 18.09 0.00 35.25 4.35
2587 2851 2.885861 CGTGAGCTCCGCCTTAGT 59.114 61.111 12.15 0.00 0.00 2.24
2602 2866 3.055719 CGGCCAACTCCAATGCGT 61.056 61.111 2.24 0.00 0.00 5.24
2603 2867 4.481112 GCGGCCAACTCCAATGCG 62.481 66.667 2.24 0.00 0.00 4.73
2606 2870 1.973281 CAGTGCGGCCAACTCCAAT 60.973 57.895 2.24 0.00 0.00 3.16
2647 2912 0.550147 TTGAGAAAGAGGGGAGGGGG 60.550 60.000 0.00 0.00 0.00 5.40
2648 2913 0.621082 GTTGAGAAAGAGGGGAGGGG 59.379 60.000 0.00 0.00 0.00 4.79
2649 2914 0.621082 GGTTGAGAAAGAGGGGAGGG 59.379 60.000 0.00 0.00 0.00 4.30
2650 2915 0.621082 GGGTTGAGAAAGAGGGGAGG 59.379 60.000 0.00 0.00 0.00 4.30
2651 2916 1.557371 GAGGGTTGAGAAAGAGGGGAG 59.443 57.143 0.00 0.00 0.00 4.30
2652 2917 1.152271 AGAGGGTTGAGAAAGAGGGGA 59.848 52.381 0.00 0.00 0.00 4.81
2653 2918 1.557371 GAGAGGGTTGAGAAAGAGGGG 59.443 57.143 0.00 0.00 0.00 4.79
2657 2922 2.304221 TCGGAGAGGGTTGAGAAAGA 57.696 50.000 0.00 0.00 0.00 2.52
2659 2924 2.764572 GGTATCGGAGAGGGTTGAGAAA 59.235 50.000 0.00 0.00 43.63 2.52
2676 2941 2.100879 GAAGAGCGGCGGGATGGTAT 62.101 60.000 9.78 0.00 0.00 2.73
2686 2951 0.533085 GATTAGGGTGGAAGAGCGGC 60.533 60.000 0.00 0.00 0.00 6.53
2694 2959 2.041430 TGCGGGGATTAGGGTGGA 59.959 61.111 0.00 0.00 0.00 4.02
2695 2960 1.921869 AAGTGCGGGGATTAGGGTGG 61.922 60.000 0.00 0.00 0.00 4.61
2696 2961 0.034477 AAAGTGCGGGGATTAGGGTG 60.034 55.000 0.00 0.00 0.00 4.61
2733 2998 2.633657 GTATGGCTCAATGCGGCG 59.366 61.111 0.51 0.51 44.05 6.46
2734 2999 1.436195 TTCGTATGGCTCAATGCGGC 61.436 55.000 0.00 0.00 44.05 6.53
2735 3000 1.013596 TTTCGTATGGCTCAATGCGG 58.986 50.000 5.58 0.00 44.05 5.69
2736 3001 2.642995 CATTTCGTATGGCTCAATGCG 58.357 47.619 0.00 0.00 44.05 4.73
2737 3002 2.033801 AGCATTTCGTATGGCTCAATGC 59.966 45.455 7.01 7.01 46.68 3.56
2739 3004 3.815401 GGTAGCATTTCGTATGGCTCAAT 59.185 43.478 0.00 0.00 37.79 2.57
2741 3006 2.484770 GGGTAGCATTTCGTATGGCTCA 60.485 50.000 0.00 0.00 37.79 4.26
2742 3007 2.143925 GGGTAGCATTTCGTATGGCTC 58.856 52.381 0.00 0.00 37.79 4.70
2744 3009 0.865769 CGGGTAGCATTTCGTATGGC 59.134 55.000 0.00 0.00 0.00 4.40
2745 3010 2.035449 TCTCGGGTAGCATTTCGTATGG 59.965 50.000 0.00 0.00 0.00 2.74
2746 3011 3.243434 ACTCTCGGGTAGCATTTCGTATG 60.243 47.826 0.00 0.00 0.00 2.39
2748 3013 2.098607 CACTCTCGGGTAGCATTTCGTA 59.901 50.000 0.00 0.00 0.00 3.43
2750 3015 1.560923 CACTCTCGGGTAGCATTTCG 58.439 55.000 0.00 0.00 0.00 3.46
2751 3016 1.291132 GCACTCTCGGGTAGCATTTC 58.709 55.000 0.00 0.00 0.00 2.17
2752 3017 0.613260 TGCACTCTCGGGTAGCATTT 59.387 50.000 0.00 0.00 0.00 2.32
2754 3019 0.684479 TCTGCACTCTCGGGTAGCAT 60.684 55.000 0.00 0.00 34.35 3.79
2755 3020 0.898326 TTCTGCACTCTCGGGTAGCA 60.898 55.000 0.00 0.00 0.00 3.49
2756 3021 0.179124 CTTCTGCACTCTCGGGTAGC 60.179 60.000 0.00 0.00 0.00 3.58
2757 3022 1.135257 CACTTCTGCACTCTCGGGTAG 60.135 57.143 0.00 0.00 0.00 3.18
2758 3023 0.888619 CACTTCTGCACTCTCGGGTA 59.111 55.000 0.00 0.00 0.00 3.69
2759 3024 1.668294 CACTTCTGCACTCTCGGGT 59.332 57.895 0.00 0.00 0.00 5.28
2760 3025 1.079543 CCACTTCTGCACTCTCGGG 60.080 63.158 0.00 0.00 0.00 5.14
2761 3026 0.108898 CTCCACTTCTGCACTCTCGG 60.109 60.000 0.00 0.00 0.00 4.63
2762 3027 0.108898 CCTCCACTTCTGCACTCTCG 60.109 60.000 0.00 0.00 0.00 4.04
2767 3032 0.460987 CGGATCCTCCACTTCTGCAC 60.461 60.000 10.75 0.00 35.91 4.57
2774 3039 0.905357 CCTTTGTCGGATCCTCCACT 59.095 55.000 10.75 0.00 35.91 4.00
2787 3052 1.525077 TTTGAGCGACCGCCTTTGT 60.525 52.632 11.03 0.00 43.17 2.83
2792 3057 1.079875 TTATCGTTTGAGCGACCGCC 61.080 55.000 11.03 3.56 43.99 6.13
2819 3084 1.659794 GTGGCGTGCTTTCCATGTT 59.340 52.632 0.00 0.00 34.47 2.71
2820 3085 2.268076 GGTGGCGTGCTTTCCATGT 61.268 57.895 0.00 0.00 34.47 3.21
2823 3088 2.281484 GAGGTGGCGTGCTTTCCA 60.281 61.111 0.00 0.00 0.00 3.53
2825 3090 0.317854 GTTTGAGGTGGCGTGCTTTC 60.318 55.000 0.00 0.00 0.00 2.62
2826 3091 1.034838 TGTTTGAGGTGGCGTGCTTT 61.035 50.000 0.00 0.00 0.00 3.51
2833 3098 1.544724 TGCCTTATGTTTGAGGTGGC 58.455 50.000 0.00 0.00 39.33 5.01
2836 3101 4.082125 CTCCTTTGCCTTATGTTTGAGGT 58.918 43.478 0.00 0.00 35.42 3.85
2861 3126 1.080501 GCCCTTCTTTTTGAGCGGC 60.081 57.895 0.00 0.00 34.83 6.53
2864 3129 1.586541 CCCGCCCTTCTTTTTGAGC 59.413 57.895 0.00 0.00 0.00 4.26
2883 3148 3.750373 CTATGCCCAACCCCGTCCG 62.750 68.421 0.00 0.00 0.00 4.79
2885 3150 0.763035 ATACTATGCCCAACCCCGTC 59.237 55.000 0.00 0.00 0.00 4.79
2886 3151 1.975680 CTATACTATGCCCAACCCCGT 59.024 52.381 0.00 0.00 0.00 5.28
2887 3152 1.278127 CCTATACTATGCCCAACCCCG 59.722 57.143 0.00 0.00 0.00 5.73
2888 3153 1.633945 CCCTATACTATGCCCAACCCC 59.366 57.143 0.00 0.00 0.00 4.95
2889 3154 1.633945 CCCCTATACTATGCCCAACCC 59.366 57.143 0.00 0.00 0.00 4.11
2917 3182 1.619807 TAAACCTCTAGGCGGGCCAC 61.620 60.000 12.97 0.00 39.32 5.01
2918 3183 0.910566 TTAAACCTCTAGGCGGGCCA 60.911 55.000 12.97 0.00 39.32 5.36
2919 3184 0.463295 GTTAAACCTCTAGGCGGGCC 60.463 60.000 0.18 0.18 39.32 5.80
2920 3185 0.251073 TGTTAAACCTCTAGGCGGGC 59.749 55.000 0.00 0.00 39.32 6.13
2921 3186 2.835027 GATGTTAAACCTCTAGGCGGG 58.165 52.381 0.00 0.94 39.32 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.