Multiple sequence alignment - TraesCS3A01G460400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G460400 chr3A 100.000 2807 0 0 1 2807 696602795 696599989 0.000000e+00 5184.0
1 TraesCS3A01G460400 chr3A 100.000 2101 0 0 3156 5256 696599640 696597540 0.000000e+00 3880.0
2 TraesCS3A01G460400 chr3A 98.482 922 14 0 1 922 696609925 696609004 0.000000e+00 1626.0
3 TraesCS3A01G460400 chr3A 86.878 884 109 5 1036 1917 629087033 629087911 0.000000e+00 983.0
4 TraesCS3A01G460400 chr3A 86.804 485 47 13 4187 4661 678044946 678044469 4.660000e-145 525.0
5 TraesCS3A01G460400 chr3A 82.063 446 69 5 3816 4258 696343326 696342889 2.310000e-98 370.0
6 TraesCS3A01G460400 chr3A 81.498 454 65 17 3223 3668 696269861 696269419 6.470000e-94 355.0
7 TraesCS3A01G460400 chr3A 81.986 433 49 17 3241 3668 696477107 696476699 1.810000e-89 340.0
8 TraesCS3A01G460400 chr3A 79.756 410 57 17 2072 2468 720939049 720938653 1.860000e-69 274.0
9 TraesCS3A01G460400 chr3A 79.756 410 57 17 2072 2468 720986839 720986443 1.860000e-69 274.0
10 TraesCS3A01G460400 chr3A 79.756 410 57 17 2072 2468 721023758 721023362 1.860000e-69 274.0
11 TraesCS3A01G460400 chr3A 84.553 246 28 6 3427 3665 696289107 696288865 8.800000e-58 235.0
12 TraesCS3A01G460400 chr3A 84.127 252 29 8 3429 3675 696638332 696638577 3.160000e-57 233.0
13 TraesCS3A01G460400 chr3A 80.625 320 41 12 2160 2468 720891985 720891676 1.470000e-55 228.0
14 TraesCS3A01G460400 chr3A 89.744 117 12 0 3244 3360 696343894 696343778 3.280000e-32 150.0
15 TraesCS3A01G460400 chr6A 98.156 922 17 0 1 922 10837091 10836170 0.000000e+00 1609.0
16 TraesCS3A01G460400 chr6A 97.941 923 19 0 1 923 10830266 10829344 0.000000e+00 1600.0
17 TraesCS3A01G460400 chr6A 97.831 922 20 0 1 922 604287937 604287016 0.000000e+00 1592.0
18 TraesCS3A01G460400 chr6A 85.575 617 64 21 4187 4790 595961812 595962416 1.610000e-174 623.0
19 TraesCS3A01G460400 chr7A 97.939 922 19 0 1 922 718331844 718330923 0.000000e+00 1598.0
20 TraesCS3A01G460400 chr7A 97.637 931 21 1 1 931 630384909 630385838 0.000000e+00 1596.0
21 TraesCS3A01G460400 chr7A 97.619 42 1 0 1964 2005 91014867 91014826 7.300000e-09 73.1
22 TraesCS3A01G460400 chr5A 97.941 923 17 2 1 922 707746000 707746921 0.000000e+00 1598.0
23 TraesCS3A01G460400 chr5A 79.503 161 18 9 1963 2115 624186068 624185915 3.350000e-17 100.0
24 TraesCS3A01G460400 chr2A 97.939 922 19 0 1 922 752537768 752536847 0.000000e+00 1598.0
25 TraesCS3A01G460400 chr2A 93.434 396 13 4 2406 2797 27356656 27356270 4.560000e-160 575.0
26 TraesCS3A01G460400 chr2A 83.557 596 74 20 4206 4790 295545499 295544917 2.150000e-148 536.0
27 TraesCS3A01G460400 chr2A 78.818 203 15 13 5081 5256 669840011 669840212 1.550000e-20 111.0
28 TraesCS3A01G460400 chr1A 97.939 922 19 0 1 922 582431683 582432604 0.000000e+00 1598.0
29 TraesCS3A01G460400 chr1A 85.854 615 65 19 4187 4790 552504869 552505472 7.430000e-178 634.0
30 TraesCS3A01G460400 chr1A 95.455 66 2 1 5191 5256 583950008 583950072 2.590000e-18 104.0
31 TraesCS3A01G460400 chr3D 87.406 1199 72 37 3415 4612 560784643 560783523 0.000000e+00 1304.0
32 TraesCS3A01G460400 chr3D 86.774 998 129 1 923 1920 560785958 560784964 0.000000e+00 1109.0
33 TraesCS3A01G460400 chr3D 86.976 883 110 3 1036 1917 560235087 560234209 0.000000e+00 989.0
34 TraesCS3A01G460400 chr3D 80.797 703 85 26 3651 4340 560703183 560702518 6.070000e-139 505.0
35 TraesCS3A01G460400 chr3D 85.590 458 53 8 3811 4265 560553129 560553576 7.970000e-128 468.0
36 TraesCS3A01G460400 chr3D 84.141 454 60 5 3809 4262 560754042 560754483 3.760000e-116 429.0
37 TraesCS3A01G460400 chr3D 82.998 447 63 7 3816 4258 560268041 560267604 4.930000e-105 392.0
38 TraesCS3A01G460400 chr3D 78.560 639 100 25 3649 4280 560479135 560479743 2.300000e-103 387.0
39 TraesCS3A01G460400 chr3D 81.579 494 64 18 3795 4281 560333108 560333581 2.970000e-102 383.0
40 TraesCS3A01G460400 chr3D 84.709 412 23 12 4646 5046 560783521 560783139 4.970000e-100 375.0
41 TraesCS3A01G460400 chr3D 80.660 424 55 15 3245 3647 560234165 560233748 2.380000e-78 303.0
42 TraesCS3A01G460400 chr3D 80.096 417 58 13 3252 3665 560827836 560828230 2.400000e-73 287.0
43 TraesCS3A01G460400 chr3D 80.739 379 59 11 3233 3603 560641055 560641427 3.100000e-72 283.0
44 TraesCS3A01G460400 chr3D 84.314 255 29 7 3425 3671 560197849 560197598 6.800000e-59 239.0
45 TraesCS3A01G460400 chr3D 86.058 208 16 4 3241 3447 560784921 560784726 1.480000e-50 211.0
46 TraesCS3A01G460400 chr3D 82.186 247 37 5 3415 3661 560332220 560332459 6.900000e-49 206.0
47 TraesCS3A01G460400 chr3D 94.309 123 6 1 5078 5200 581057299 581057178 2.500000e-43 187.0
48 TraesCS3A01G460400 chr3D 91.453 117 10 0 3244 3360 560268617 560268501 1.510000e-35 161.0
49 TraesCS3A01G460400 chr3D 90.667 75 7 0 3244 3318 560478724 560478798 3.350000e-17 100.0
50 TraesCS3A01G460400 chr3D 87.838 74 9 0 3519 3592 560645623 560645550 2.610000e-13 87.9
51 TraesCS3A01G460400 chr3B 89.741 1004 92 3 923 1920 745474955 745473957 0.000000e+00 1273.0
52 TraesCS3A01G460400 chr3B 86.573 998 126 4 923 1920 745450542 745449553 0.000000e+00 1094.0
53 TraesCS3A01G460400 chr3B 86.030 995 116 10 923 1917 744590519 744591490 0.000000e+00 1046.0
54 TraesCS3A01G460400 chr3B 85.972 998 117 10 923 1920 746856439 746855465 0.000000e+00 1046.0
55 TraesCS3A01G460400 chr3B 94.169 686 28 3 3757 4440 745473342 745472667 0.000000e+00 1035.0
56 TraesCS3A01G460400 chr3B 87.429 883 106 3 1036 1917 747493065 747493943 0.000000e+00 1011.0
57 TraesCS3A01G460400 chr3B 86.863 883 111 3 1036 1917 744419835 744418957 0.000000e+00 983.0
58 TraesCS3A01G460400 chr3B 93.763 497 31 0 3242 3738 745473913 745473417 0.000000e+00 747.0
59 TraesCS3A01G460400 chr3B 84.358 716 60 28 3640 4340 745448948 745448270 0.000000e+00 654.0
60 TraesCS3A01G460400 chr3B 80.983 773 97 25 3583 4340 745243564 745242827 7.640000e-158 568.0
61 TraesCS3A01G460400 chr3B 86.788 439 28 12 4435 4851 745467635 745467205 3.710000e-126 462.0
62 TraesCS3A01G460400 chr3B 84.749 459 59 6 3809 4265 746286536 746286985 2.890000e-122 449.0
63 TraesCS3A01G460400 chr3B 84.086 465 63 4 3798 4262 745441607 745442060 6.250000e-119 438.0
64 TraesCS3A01G460400 chr3B 84.396 455 60 6 3813 4265 744848657 744849102 2.250000e-118 436.0
65 TraesCS3A01G460400 chr3B 83.589 457 64 6 3811 4265 744730064 744730511 8.140000e-113 418.0
66 TraesCS3A01G460400 chr3B 83.296 449 62 7 3815 4262 745548369 745548805 8.200000e-108 401.0
67 TraesCS3A01G460400 chr3B 82.159 454 67 7 3803 4254 746854474 746854033 1.380000e-100 377.0
68 TraesCS3A01G460400 chr3B 82.599 431 61 8 3817 4243 747331948 747332368 8.320000e-98 368.0
69 TraesCS3A01G460400 chr3B 80.974 431 49 19 3245 3647 744418913 744418488 1.420000e-80 311.0
70 TraesCS3A01G460400 chr3B 78.788 495 63 26 1964 2443 740056223 740055756 1.430000e-75 294.0
71 TraesCS3A01G460400 chr3B 79.907 428 62 18 3259 3678 745202438 745202027 5.150000e-75 292.0
72 TraesCS3A01G460400 chr3B 92.935 184 12 1 3415 3598 745449266 745449084 3.120000e-67 267.0
73 TraesCS3A01G460400 chr3B 78.515 377 60 12 3233 3597 744848098 744848465 1.470000e-55 228.0
74 TraesCS3A01G460400 chr3B 78.364 379 57 15 3233 3597 744729525 744729892 6.850000e-54 222.0
75 TraesCS3A01G460400 chr3B 96.639 119 3 1 5082 5200 132398069 132397952 4.150000e-46 196.0
76 TraesCS3A01G460400 chr3B 95.798 119 5 0 5082 5200 55697308 55697190 5.370000e-45 193.0
77 TraesCS3A01G460400 chr3B 95.798 119 4 1 5082 5200 55688676 55688559 1.930000e-44 191.0
78 TraesCS3A01G460400 chr3B 95.000 120 5 1 5081 5200 461751991 461752109 2.500000e-43 187.0
79 TraesCS3A01G460400 chr3B 98.387 62 1 0 5195 5256 19755923 19755984 5.560000e-20 110.0
80 TraesCS3A01G460400 chr3B 98.387 62 1 0 5195 5256 19784075 19784136 5.560000e-20 110.0
81 TraesCS3A01G460400 chr3B 98.387 62 1 0 5195 5256 30738553 30738492 5.560000e-20 110.0
82 TraesCS3A01G460400 chr3B 98.387 62 1 0 5195 5256 55688536 55688475 5.560000e-20 110.0
83 TraesCS3A01G460400 chr3B 74.126 286 55 14 2513 2789 565711020 565711295 3.350000e-17 100.0
84 TraesCS3A01G460400 chr4D 94.238 833 31 7 1965 2794 458150054 458149236 0.000000e+00 1256.0
85 TraesCS3A01G460400 chr1B 90.954 818 41 13 1968 2783 565796644 565797430 0.000000e+00 1070.0
86 TraesCS3A01G460400 chr1B 93.537 294 15 2 4187 4480 39565449 39565738 8.080000e-118 435.0
87 TraesCS3A01G460400 chr1B 98.000 50 1 0 3156 3205 565797486 565797535 2.610000e-13 87.9
88 TraesCS3A01G460400 chr6B 94.628 484 12 4 2318 2797 648164612 648165085 0.000000e+00 737.0
89 TraesCS3A01G460400 chr6B 84.903 616 69 20 4187 4790 148311819 148311216 7.530000e-168 601.0
90 TraesCS3A01G460400 chr6B 94.631 298 9 3 1965 2261 648163997 648164288 6.200000e-124 455.0
91 TraesCS3A01G460400 chr6B 96.639 119 4 0 5082 5200 21108040 21107922 1.150000e-46 198.0
92 TraesCS3A01G460400 chr7B 95.238 378 13 2 2341 2715 539325737 539326112 1.260000e-165 593.0
93 TraesCS3A01G460400 chr7B 77.564 156 27 7 2533 2685 568770788 568770638 2.610000e-13 87.9
94 TraesCS3A01G460400 chr7B 85.938 64 5 3 2513 2572 568770866 568770803 1.220000e-06 65.8
95 TraesCS3A01G460400 chrUn 80.983 773 97 25 3583 4340 301718484 301719221 7.640000e-158 568.0
96 TraesCS3A01G460400 chrUn 79.853 407 56 17 2072 2465 379393461 379393854 1.860000e-69 274.0
97 TraesCS3A01G460400 chrUn 98.387 62 1 0 5195 5256 304894182 304894121 5.560000e-20 110.0
98 TraesCS3A01G460400 chr2B 84.492 561 64 19 4241 4790 623057536 623056988 2.790000e-147 532.0
99 TraesCS3A01G460400 chr2B 95.798 119 5 0 5082 5200 689161362 689161480 5.370000e-45 193.0
100 TraesCS3A01G460400 chr2B 98.387 62 1 0 5195 5256 689161503 689161564 5.560000e-20 110.0
101 TraesCS3A01G460400 chr2B 98.387 62 1 0 5195 5256 781227507 781227568 5.560000e-20 110.0
102 TraesCS3A01G460400 chr2B 90.625 64 5 1 2533 2595 58201431 58201494 3.370000e-12 84.2
103 TraesCS3A01G460400 chr4B 80.986 284 41 10 1964 2246 31961751 31962022 4.120000e-51 213.0
104 TraesCS3A01G460400 chr4B 93.548 124 8 0 5082 5205 580381058 580380935 8.990000e-43 185.0
105 TraesCS3A01G460400 chr5B 94.118 119 7 0 5082 5200 548123893 548124011 1.160000e-41 182.0
106 TraesCS3A01G460400 chr2D 81.283 187 26 5 1964 2146 346045389 346045208 5.490000e-30 143.0
107 TraesCS3A01G460400 chr6D 93.617 47 2 1 1964 2009 194242371 194242325 9.440000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G460400 chr3A 696597540 696602795 5255 True 4532.000000 5184 100.000000 1 5256 2 chr3A.!!$R11 5255
1 TraesCS3A01G460400 chr3A 696609004 696609925 921 True 1626.000000 1626 98.482000 1 922 1 chr3A.!!$R5 921
2 TraesCS3A01G460400 chr3A 629087033 629087911 878 False 983.000000 983 86.878000 1036 1917 1 chr3A.!!$F1 881
3 TraesCS3A01G460400 chr3A 696342889 696343894 1005 True 260.000000 370 85.903500 3244 4258 2 chr3A.!!$R10 1014
4 TraesCS3A01G460400 chr6A 10836170 10837091 921 True 1609.000000 1609 98.156000 1 922 1 chr6A.!!$R2 921
5 TraesCS3A01G460400 chr6A 10829344 10830266 922 True 1600.000000 1600 97.941000 1 923 1 chr6A.!!$R1 922
6 TraesCS3A01G460400 chr6A 604287016 604287937 921 True 1592.000000 1592 97.831000 1 922 1 chr6A.!!$R3 921
7 TraesCS3A01G460400 chr6A 595961812 595962416 604 False 623.000000 623 85.575000 4187 4790 1 chr6A.!!$F1 603
8 TraesCS3A01G460400 chr7A 718330923 718331844 921 True 1598.000000 1598 97.939000 1 922 1 chr7A.!!$R2 921
9 TraesCS3A01G460400 chr7A 630384909 630385838 929 False 1596.000000 1596 97.637000 1 931 1 chr7A.!!$F1 930
10 TraesCS3A01G460400 chr5A 707746000 707746921 921 False 1598.000000 1598 97.941000 1 922 1 chr5A.!!$F1 921
11 TraesCS3A01G460400 chr2A 752536847 752537768 921 True 1598.000000 1598 97.939000 1 922 1 chr2A.!!$R3 921
12 TraesCS3A01G460400 chr2A 295544917 295545499 582 True 536.000000 536 83.557000 4206 4790 1 chr2A.!!$R2 584
13 TraesCS3A01G460400 chr1A 582431683 582432604 921 False 1598.000000 1598 97.939000 1 922 1 chr1A.!!$F2 921
14 TraesCS3A01G460400 chr1A 552504869 552505472 603 False 634.000000 634 85.854000 4187 4790 1 chr1A.!!$F1 603
15 TraesCS3A01G460400 chr3D 560783139 560785958 2819 True 749.750000 1304 86.236750 923 5046 4 chr3D.!!$R7 4123
16 TraesCS3A01G460400 chr3D 560233748 560235087 1339 True 646.000000 989 83.818000 1036 3647 2 chr3D.!!$R5 2611
17 TraesCS3A01G460400 chr3D 560702518 560703183 665 True 505.000000 505 80.797000 3651 4340 1 chr3D.!!$R3 689
18 TraesCS3A01G460400 chr3D 560332220 560333581 1361 False 294.500000 383 81.882500 3415 4281 2 chr3D.!!$F5 866
19 TraesCS3A01G460400 chr3D 560267604 560268617 1013 True 276.500000 392 87.225500 3244 4258 2 chr3D.!!$R6 1014
20 TraesCS3A01G460400 chr3D 560478724 560479743 1019 False 243.500000 387 84.613500 3244 4280 2 chr3D.!!$F6 1036
21 TraesCS3A01G460400 chr3B 744590519 744591490 971 False 1046.000000 1046 86.030000 923 1917 1 chr3B.!!$F5 994
22 TraesCS3A01G460400 chr3B 745472667 745474955 2288 True 1018.333333 1273 92.557667 923 4440 3 chr3B.!!$R11 3517
23 TraesCS3A01G460400 chr3B 747493065 747493943 878 False 1011.000000 1011 87.429000 1036 1917 1 chr3B.!!$F10 881
24 TraesCS3A01G460400 chr3B 746854033 746856439 2406 True 711.500000 1046 84.065500 923 4254 2 chr3B.!!$R12 3331
25 TraesCS3A01G460400 chr3B 745448270 745450542 2272 True 671.666667 1094 87.955333 923 4340 3 chr3B.!!$R10 3417
26 TraesCS3A01G460400 chr3B 744418488 744419835 1347 True 647.000000 983 83.918500 1036 3647 2 chr3B.!!$R9 2611
27 TraesCS3A01G460400 chr3B 745242827 745243564 737 True 568.000000 568 80.983000 3583 4340 1 chr3B.!!$R6 757
28 TraesCS3A01G460400 chr3B 744848098 744849102 1004 False 332.000000 436 81.455500 3233 4265 2 chr3B.!!$F12 1032
29 TraesCS3A01G460400 chr3B 744729525 744730511 986 False 320.000000 418 80.976500 3233 4265 2 chr3B.!!$F11 1032
30 TraesCS3A01G460400 chr4D 458149236 458150054 818 True 1256.000000 1256 94.238000 1965 2794 1 chr4D.!!$R1 829
31 TraesCS3A01G460400 chr1B 565796644 565797535 891 False 578.950000 1070 94.477000 1968 3205 2 chr1B.!!$F2 1237
32 TraesCS3A01G460400 chr6B 148311216 148311819 603 True 601.000000 601 84.903000 4187 4790 1 chr6B.!!$R2 603
33 TraesCS3A01G460400 chr6B 648163997 648165085 1088 False 596.000000 737 94.629500 1965 2797 2 chr6B.!!$F1 832
34 TraesCS3A01G460400 chrUn 301718484 301719221 737 False 568.000000 568 80.983000 3583 4340 1 chrUn.!!$F1 757
35 TraesCS3A01G460400 chr2B 623056988 623057536 548 True 532.000000 532 84.492000 4241 4790 1 chr2B.!!$R1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 943 0.179089 CCTCCATTCTCCACTGCTCG 60.179 60.0 0.00 0.00 0.00 5.03 F
1652 1660 0.392193 CTCTGCCTTGGCGTCTTCAT 60.392 55.0 7.18 0.00 0.00 2.57 F
1896 1904 0.543277 ACATCGATGTGGTGGATGCT 59.457 50.0 29.49 0.86 44.26 3.79 F
3216 3498 0.039346 GATACTTCCCGTAGCTCCGC 60.039 60.0 0.00 0.00 31.88 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 1959 0.107165 GCCCCTGGAGTGGTATTGTC 60.107 60.0 0.00 0.0 0.00 3.18 R
3216 3498 0.325296 TAGGCTGAGTGGTACAGGGG 60.325 60.0 0.00 0.0 41.80 4.79 R
3230 3512 0.466124 GCCGTTCTTGATCCTAGGCT 59.534 55.0 2.96 0.0 39.92 4.58 R
5084 6411 0.107214 CCCGGTGCACCAGATACATT 60.107 55.0 34.16 0.0 35.14 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
427 429 1.074244 GGCCTAGAGATACCTCTCCGT 59.926 57.143 0.00 0.00 46.38 4.69
495 497 4.620723 TCTACCATTGGAGACACCTGTAT 58.379 43.478 10.37 0.00 42.67 2.29
816 818 7.805700 TGTTTGTCTATGTATTCACACATGTG 58.194 34.615 24.25 24.25 46.91 3.21
931 933 5.136105 GCATATTTCCTTCACCTCCATTCT 58.864 41.667 0.00 0.00 0.00 2.40
941 943 0.179089 CCTCCATTCTCCACTGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
1053 1061 4.892934 GGGATCATCTCTAGGAGCGATATT 59.107 45.833 0.00 0.00 0.00 1.28
1132 1140 1.616374 TGATGCTCCACTTCGTGTACA 59.384 47.619 0.00 0.00 0.00 2.90
1251 1259 2.307768 GATGTGGTCCTCCTCGACATA 58.692 52.381 0.00 0.00 34.24 2.29
1339 1347 4.143333 GCTCGGCGACCCTTGCTA 62.143 66.667 4.99 0.00 0.00 3.49
1368 1376 1.445942 CCATATGCTTCCGGACGGT 59.554 57.895 1.83 0.00 36.47 4.83
1525 1533 1.744639 GAGATGGCGAGCTGGATCA 59.255 57.895 0.00 0.00 0.00 2.92
1579 1587 1.076632 TTTGTCAACCGCCCTTGGT 60.077 52.632 0.00 0.00 46.67 3.67
1600 1608 1.852157 ATTGACCTGTGCCTCCCCA 60.852 57.895 0.00 0.00 0.00 4.96
1605 1613 3.569210 CTGTGCCTCCCCACCACA 61.569 66.667 0.00 0.00 37.82 4.17
1637 1645 3.465403 CTCCCTCACCCGCCTCTG 61.465 72.222 0.00 0.00 0.00 3.35
1641 1649 3.710722 CTCACCCGCCTCTGCCTT 61.711 66.667 0.00 0.00 0.00 4.35
1649 1657 2.348998 CCTCTGCCTTGGCGTCTT 59.651 61.111 7.18 0.00 0.00 3.01
1650 1658 1.743252 CCTCTGCCTTGGCGTCTTC 60.743 63.158 7.18 0.00 0.00 2.87
1652 1660 0.392193 CTCTGCCTTGGCGTCTTCAT 60.392 55.000 7.18 0.00 0.00 2.57
1711 1719 2.279073 CCTACCTCCGGGAGCTCA 59.721 66.667 18.91 4.56 36.25 4.26
1712 1720 1.152440 CCTACCTCCGGGAGCTCAT 60.152 63.158 18.91 6.10 36.25 2.90
1726 1734 3.070734 GGAGCTCATCCTCTGCTTGAATA 59.929 47.826 17.19 0.00 45.64 1.75
1727 1735 4.057432 GAGCTCATCCTCTGCTTGAATAC 58.943 47.826 9.40 0.00 37.16 1.89
1734 1742 3.523157 TCCTCTGCTTGAATACCATGGAA 59.477 43.478 21.47 0.00 0.00 3.53
1737 1745 4.774124 TCTGCTTGAATACCATGGAAGAG 58.226 43.478 21.47 10.19 0.00 2.85
1786 1794 1.305381 CCCGTCCTGGAGTTCCTCT 60.305 63.158 0.00 0.00 42.00 3.69
1797 1805 2.774234 GGAGTTCCTCTTCATCATGGGA 59.226 50.000 0.00 0.00 0.00 4.37
1799 1807 4.324563 GGAGTTCCTCTTCATCATGGGAAA 60.325 45.833 0.00 0.00 37.73 3.13
1864 1872 2.946762 GCGTTCAGCTCGGCTTTT 59.053 55.556 0.00 0.00 44.04 2.27
1871 1879 1.082690 CAGCTCGGCTTTTCCTTCTC 58.917 55.000 0.00 0.00 36.40 2.87
1884 1892 1.133761 TCCTTCTCGGAGGACATCGAT 60.134 52.381 4.96 0.00 40.87 3.59
1896 1904 0.543277 ACATCGATGTGGTGGATGCT 59.457 50.000 29.49 0.86 44.26 3.79
1922 1930 3.362870 CCTGGAGAGGCTCTTTCATTT 57.637 47.619 19.80 0.00 30.52 2.32
1923 1931 3.694926 CCTGGAGAGGCTCTTTCATTTT 58.305 45.455 19.80 0.00 30.52 1.82
1925 1933 3.424703 TGGAGAGGCTCTTTCATTTTGG 58.575 45.455 19.80 0.00 0.00 3.28
1926 1934 2.165234 GGAGAGGCTCTTTCATTTTGGC 59.835 50.000 19.80 1.04 0.00 4.52
1927 1935 1.815003 AGAGGCTCTTTCATTTTGGCG 59.185 47.619 12.24 0.00 0.00 5.69
1928 1936 1.812571 GAGGCTCTTTCATTTTGGCGA 59.187 47.619 7.40 0.00 0.00 5.54
1929 1937 1.815003 AGGCTCTTTCATTTTGGCGAG 59.185 47.619 0.00 0.00 0.00 5.03
1930 1938 1.622232 GCTCTTTCATTTTGGCGAGC 58.378 50.000 0.00 0.00 37.35 5.03
1933 1941 1.464608 TCTTTCATTTTGGCGAGCTCG 59.535 47.619 31.37 31.37 43.27 5.03
1944 1952 2.514824 GAGCTCGCCCATTCCCAC 60.515 66.667 0.00 0.00 0.00 4.61
1945 1953 3.329542 GAGCTCGCCCATTCCCACA 62.330 63.158 0.00 0.00 0.00 4.17
1946 1954 2.825836 GCTCGCCCATTCCCACAG 60.826 66.667 0.00 0.00 0.00 3.66
1947 1955 2.124570 CTCGCCCATTCCCACAGG 60.125 66.667 0.00 0.00 0.00 4.00
1948 1956 2.609299 TCGCCCATTCCCACAGGA 60.609 61.111 0.00 0.00 41.88 3.86
1949 1957 1.987807 CTCGCCCATTCCCACAGGAT 61.988 60.000 0.00 0.00 43.54 3.24
1950 1958 1.825191 CGCCCATTCCCACAGGATG 60.825 63.158 0.00 0.00 43.54 3.51
1962 1970 3.634397 CACAGGATGGACAATACCACT 57.366 47.619 0.00 0.00 43.62 4.00
1963 1971 3.535561 CACAGGATGGACAATACCACTC 58.464 50.000 0.00 0.00 43.62 3.51
2068 2080 5.506708 ACCAAGGGGAACACAAGATAATAC 58.493 41.667 0.00 0.00 38.05 1.89
2069 2081 5.014755 ACCAAGGGGAACACAAGATAATACA 59.985 40.000 0.00 0.00 38.05 2.29
2070 2082 5.590259 CCAAGGGGAACACAAGATAATACAG 59.410 44.000 0.00 0.00 35.59 2.74
2071 2083 6.180472 CAAGGGGAACACAAGATAATACAGT 58.820 40.000 0.00 0.00 0.00 3.55
2072 2084 7.335627 CAAGGGGAACACAAGATAATACAGTA 58.664 38.462 0.00 0.00 0.00 2.74
2278 2290 2.031157 GCCATCATGTATACAAACCGGC 60.031 50.000 18.30 18.30 0.00 6.13
2301 2313 6.479884 GCATGTAGATTTCTAATCATCCCCT 58.520 40.000 0.00 0.00 0.00 4.79
2302 2314 6.597280 GCATGTAGATTTCTAATCATCCCCTC 59.403 42.308 0.00 0.00 0.00 4.30
2386 2665 1.043816 CCTAGACATGAGCCGATGGT 58.956 55.000 0.00 0.00 0.00 3.55
2387 2666 2.239400 CCTAGACATGAGCCGATGGTA 58.761 52.381 0.00 0.00 0.00 3.25
2422 2701 2.101082 TGGCGTGAGTAGTGTTGTGTTA 59.899 45.455 0.00 0.00 0.00 2.41
2497 2776 6.935208 ACTCCGTCTATAGCAAAAAGTTTCTT 59.065 34.615 0.00 0.00 0.00 2.52
2515 2794 6.094881 AGTTTCTTATCTCCTCGACTGAAGAG 59.905 42.308 0.00 0.00 34.54 2.85
2529 2808 1.001633 TGAAGAGGCGGACCAGTTTAC 59.998 52.381 0.00 0.00 39.06 2.01
2690 2972 2.574222 CGGCGCCGAAACGATCTAC 61.574 63.158 44.86 1.37 42.83 2.59
2794 3076 5.957842 TTACATGGGCTTCAACTTACAAG 57.042 39.130 0.00 0.00 0.00 3.16
2795 3077 3.832527 ACATGGGCTTCAACTTACAAGT 58.167 40.909 0.00 0.00 42.04 3.16
3211 3493 4.762956 AGATTACGATACTTCCCGTAGC 57.237 45.455 0.00 0.00 41.44 3.58
3212 3494 4.396522 AGATTACGATACTTCCCGTAGCT 58.603 43.478 0.00 0.00 41.44 3.32
3213 3495 4.455190 AGATTACGATACTTCCCGTAGCTC 59.545 45.833 0.00 0.00 41.44 4.09
3214 3496 1.316651 ACGATACTTCCCGTAGCTCC 58.683 55.000 0.00 0.00 37.23 4.70
3215 3497 0.237761 CGATACTTCCCGTAGCTCCG 59.762 60.000 0.00 0.00 32.40 4.63
3216 3498 0.039346 GATACTTCCCGTAGCTCCGC 60.039 60.000 0.00 0.00 31.88 5.54
3217 3499 1.461911 ATACTTCCCGTAGCTCCGCC 61.462 60.000 0.00 0.00 0.00 6.13
3218 3500 4.222847 CTTCCCGTAGCTCCGCCC 62.223 72.222 0.00 0.00 0.00 6.13
3223 3505 2.831742 CGTAGCTCCGCCCCTGTA 60.832 66.667 0.00 0.00 0.00 2.74
3230 3512 3.000819 CCGCCCCTGTACCACTCA 61.001 66.667 0.00 0.00 0.00 3.41
3231 3513 2.579201 CGCCCCTGTACCACTCAG 59.421 66.667 0.00 0.00 0.00 3.35
3234 3516 1.613630 CCCCTGTACCACTCAGCCT 60.614 63.158 0.00 0.00 0.00 4.58
3250 3532 0.876342 GCCTAGGATCAAGAACGGCG 60.876 60.000 14.75 4.80 0.00 6.46
3396 3706 9.888878 CTAATTTGATTTGCATATCTGTACCTG 57.111 33.333 16.62 1.11 0.00 4.00
3453 3891 3.063704 CGCATTGCAGGCTGGGAA 61.064 61.111 17.64 5.01 0.00 3.97
3465 3903 1.239347 GCTGGGAACAAGGAGAACAC 58.761 55.000 0.00 0.00 42.06 3.32
3468 3906 1.239347 GGGAACAAGGAGAACACTGC 58.761 55.000 0.00 0.00 0.00 4.40
3533 3971 0.236711 CAGCGCTGTGAAGAAAGTGG 59.763 55.000 29.24 0.00 0.00 4.00
3537 3975 1.597742 GCTGTGAAGAAAGTGGCTGA 58.402 50.000 0.00 0.00 0.00 4.26
3612 4165 8.970691 TTGGTTAACTTAACTAGATACACGTC 57.029 34.615 5.42 0.00 38.68 4.34
3681 4785 8.886719 AGCATGGTCATAATTGATTGTATATCG 58.113 33.333 0.00 0.00 33.56 2.92
3695 4799 4.145052 TGTATATCGAGCATGGTCAGAGT 58.855 43.478 23.68 15.35 0.00 3.24
3743 4882 3.319135 GCCTGCTGCTGCTATATGT 57.681 52.632 17.00 0.00 40.48 2.29
3744 4883 0.873054 GCCTGCTGCTGCTATATGTG 59.127 55.000 17.00 0.00 40.48 3.21
3746 4885 2.548707 GCCTGCTGCTGCTATATGTGTA 60.549 50.000 17.00 0.00 40.48 2.90
3748 4887 3.744942 CCTGCTGCTGCTATATGTGTAAG 59.255 47.826 17.00 1.54 40.48 2.34
3749 4888 3.133691 TGCTGCTGCTATATGTGTAAGC 58.866 45.455 17.00 0.00 40.48 3.09
3750 4889 3.181462 TGCTGCTGCTATATGTGTAAGCT 60.181 43.478 17.00 0.00 40.48 3.74
3751 4890 3.186001 GCTGCTGCTATATGTGTAAGCTG 59.814 47.826 8.53 0.00 37.16 4.24
3752 4891 4.375272 CTGCTGCTATATGTGTAAGCTGT 58.625 43.478 0.00 0.00 37.47 4.40
3753 4892 4.122046 TGCTGCTATATGTGTAAGCTGTG 58.878 43.478 0.00 0.00 37.47 3.66
3754 4893 4.141959 TGCTGCTATATGTGTAAGCTGTGA 60.142 41.667 0.00 0.00 37.47 3.58
3755 4894 4.811024 GCTGCTATATGTGTAAGCTGTGAA 59.189 41.667 0.00 0.00 37.47 3.18
3850 5135 2.707791 CCCCCATCTTATCTGAAGAGCA 59.292 50.000 0.00 0.00 0.00 4.26
3878 5163 3.190118 GCAAGGTCAATCTCAAGTTCTGG 59.810 47.826 0.00 0.00 0.00 3.86
3879 5164 3.064900 AGGTCAATCTCAAGTTCTGGC 57.935 47.619 0.00 0.00 0.00 4.85
3880 5165 2.373169 AGGTCAATCTCAAGTTCTGGCA 59.627 45.455 0.00 0.00 0.00 4.92
3881 5166 2.746362 GGTCAATCTCAAGTTCTGGCAG 59.254 50.000 8.58 8.58 0.00 4.85
3882 5167 2.746362 GTCAATCTCAAGTTCTGGCAGG 59.254 50.000 15.73 0.00 0.00 4.85
3883 5168 2.639347 TCAATCTCAAGTTCTGGCAGGA 59.361 45.455 15.73 1.78 0.00 3.86
3884 5169 2.746362 CAATCTCAAGTTCTGGCAGGAC 59.254 50.000 18.56 18.56 0.00 3.85
3885 5170 0.687354 TCTCAAGTTCTGGCAGGACC 59.313 55.000 22.30 6.59 39.84 4.46
4064 5349 0.178932 CTCTCCGGGGGATGATGGTA 60.179 60.000 0.00 0.00 0.00 3.25
4146 5431 1.719600 CTCTTCAAGAGCCCGTTCAG 58.280 55.000 0.18 0.00 35.30 3.02
4459 5766 3.118775 AGTCAATTGTCGGCATAGCTGTA 60.119 43.478 5.13 0.00 36.18 2.74
4500 5807 4.581824 CCAGCTCCTATGCATTATGTTGTT 59.418 41.667 3.54 0.00 34.99 2.83
4501 5808 5.506815 CCAGCTCCTATGCATTATGTTGTTG 60.507 44.000 3.54 0.00 34.99 3.33
4502 5809 5.066893 CAGCTCCTATGCATTATGTTGTTGT 59.933 40.000 3.54 0.00 34.99 3.32
4504 5811 5.745294 GCTCCTATGCATTATGTTGTTGTTG 59.255 40.000 3.54 0.00 0.00 3.33
4506 5813 7.225784 TCCTATGCATTATGTTGTTGTTGTT 57.774 32.000 3.54 0.00 0.00 2.83
4507 5814 7.089538 TCCTATGCATTATGTTGTTGTTGTTG 58.910 34.615 3.54 0.00 0.00 3.33
4508 5815 6.867816 CCTATGCATTATGTTGTTGTTGTTGT 59.132 34.615 3.54 0.00 0.00 3.32
4596 5909 5.163509 GGTCTCAGCTGGAAAAAGTTTCTTT 60.164 40.000 15.13 0.00 0.00 2.52
4616 5929 9.829507 TTTCTTTCCAAATCATTATGTTGTTGT 57.170 25.926 0.00 0.00 0.00 3.32
4617 5930 9.829507 TTCTTTCCAAATCATTATGTTGTTGTT 57.170 25.926 0.00 0.00 0.00 2.83
4618 5931 9.258826 TCTTTCCAAATCATTATGTTGTTGTTG 57.741 29.630 0.00 0.00 0.00 3.33
4619 5932 8.954950 TTTCCAAATCATTATGTTGTTGTTGT 57.045 26.923 0.00 0.00 0.00 3.32
4620 5933 8.954950 TTCCAAATCATTATGTTGTTGTTGTT 57.045 26.923 0.00 0.00 0.00 2.83
4621 5934 8.362860 TCCAAATCATTATGTTGTTGTTGTTG 57.637 30.769 0.00 0.00 0.00 3.33
4622 5935 7.984050 TCCAAATCATTATGTTGTTGTTGTTGT 59.016 29.630 0.00 0.00 0.00 3.32
4623 5936 8.610896 CCAAATCATTATGTTGTTGTTGTTGTT 58.389 29.630 0.00 0.00 0.00 2.83
4625 5938 8.715191 AATCATTATGTTGTTGTTGTTGTTGT 57.285 26.923 0.00 0.00 0.00 3.32
4626 5939 8.715191 ATCATTATGTTGTTGTTGTTGTTGTT 57.285 26.923 0.00 0.00 0.00 2.83
4635 5948 5.048364 TGTTGTTGTTGTTGTTAGCAGTTCT 60.048 36.000 0.00 0.00 0.00 3.01
4661 5974 2.106332 GCCAGCCAGCATGCAATC 59.894 61.111 21.98 7.72 31.97 2.67
4698 6015 6.547141 GCCTGATATATACTCTGATCTCAGCT 59.453 42.308 2.21 0.00 43.46 4.24
4828 6148 2.781681 TCTGTGGCTAAAAGGGTAGC 57.218 50.000 0.00 0.00 44.87 3.58
4829 6149 1.982226 TCTGTGGCTAAAAGGGTAGCA 59.018 47.619 6.55 0.00 46.98 3.49
4846 6166 1.557832 AGCAATAGTTTGGCCGTAGGA 59.442 47.619 0.00 0.00 41.47 2.94
4847 6167 2.172717 AGCAATAGTTTGGCCGTAGGAT 59.827 45.455 0.00 0.00 41.47 3.24
4848 6168 3.389983 AGCAATAGTTTGGCCGTAGGATA 59.610 43.478 0.00 0.00 41.47 2.59
4849 6169 4.041691 AGCAATAGTTTGGCCGTAGGATAT 59.958 41.667 0.00 0.00 41.47 1.63
4850 6170 5.247564 AGCAATAGTTTGGCCGTAGGATATA 59.752 40.000 0.00 0.00 41.47 0.86
4851 6171 6.070194 AGCAATAGTTTGGCCGTAGGATATAT 60.070 38.462 0.00 0.00 41.47 0.86
4852 6172 7.125204 AGCAATAGTTTGGCCGTAGGATATATA 59.875 37.037 0.00 0.00 41.47 0.86
4853 6173 7.767198 GCAATAGTTTGGCCGTAGGATATATAA 59.233 37.037 0.00 0.00 41.47 0.98
4887 6207 4.808414 TTCAGAGTACCCATCAGTTCTG 57.192 45.455 0.00 0.00 34.76 3.02
4890 6216 4.593206 TCAGAGTACCCATCAGTTCTGTTT 59.407 41.667 4.90 0.00 34.97 2.83
4902 6228 6.020971 TCAGTTCTGTTTACTATCGCTCAA 57.979 37.500 0.00 0.00 0.00 3.02
4960 6286 6.429078 TGATTAGCAATCAAGCAGATCATACC 59.571 38.462 8.52 0.00 44.47 2.73
4974 6300 7.998383 AGCAGATCATACCACCACAAATAAATA 59.002 33.333 0.00 0.00 0.00 1.40
4977 6303 9.866655 AGATCATACCACCACAAATAAATATGT 57.133 29.630 0.00 0.00 0.00 2.29
5047 6374 8.361139 AGTAAGGTAGATGACATAGTACAATGC 58.639 37.037 0.00 2.75 0.00 3.56
5048 6375 6.985653 AGGTAGATGACATAGTACAATGCT 57.014 37.500 0.00 0.00 0.00 3.79
5049 6376 8.478775 AAGGTAGATGACATAGTACAATGCTA 57.521 34.615 0.00 0.00 0.00 3.49
5050 6377 7.887381 AGGTAGATGACATAGTACAATGCTAC 58.113 38.462 0.00 0.00 0.00 3.58
5051 6378 7.039644 AGGTAGATGACATAGTACAATGCTACC 60.040 40.741 12.83 12.83 0.00 3.18
5052 6379 6.731292 AGATGACATAGTACAATGCTACCA 57.269 37.500 0.00 0.00 0.00 3.25
5053 6380 6.753180 AGATGACATAGTACAATGCTACCAG 58.247 40.000 0.00 0.00 0.00 4.00
5054 6381 5.932619 TGACATAGTACAATGCTACCAGT 57.067 39.130 0.00 0.00 0.00 4.00
5055 6382 7.505923 AGATGACATAGTACAATGCTACCAGTA 59.494 37.037 0.00 0.00 0.00 2.74
5056 6383 6.802608 TGACATAGTACAATGCTACCAGTAC 58.197 40.000 0.00 0.00 37.65 2.73
5057 6384 6.605995 TGACATAGTACAATGCTACCAGTACT 59.394 38.462 8.83 8.83 46.28 2.73
5058 6385 7.040473 ACATAGTACAATGCTACCAGTACTC 57.960 40.000 7.30 0.00 44.22 2.59
5059 6386 4.634184 AGTACAATGCTACCAGTACTCG 57.366 45.455 0.00 0.00 42.38 4.18
5060 6387 4.015084 AGTACAATGCTACCAGTACTCGT 58.985 43.478 0.00 0.00 42.38 4.18
5061 6388 3.955650 ACAATGCTACCAGTACTCGTT 57.044 42.857 0.00 0.00 0.00 3.85
5062 6389 5.649395 AGTACAATGCTACCAGTACTCGTTA 59.351 40.000 0.00 0.00 42.38 3.18
5063 6390 5.395682 ACAATGCTACCAGTACTCGTTAA 57.604 39.130 0.00 0.00 0.00 2.01
5064 6391 5.974108 ACAATGCTACCAGTACTCGTTAAT 58.026 37.500 0.00 0.00 0.00 1.40
5065 6392 6.403878 ACAATGCTACCAGTACTCGTTAATT 58.596 36.000 0.00 0.00 0.00 1.40
5066 6393 6.877322 ACAATGCTACCAGTACTCGTTAATTT 59.123 34.615 0.00 0.00 0.00 1.82
5067 6394 6.903883 ATGCTACCAGTACTCGTTAATTTG 57.096 37.500 0.00 0.00 0.00 2.32
5068 6395 5.172934 TGCTACCAGTACTCGTTAATTTGG 58.827 41.667 0.00 0.00 0.00 3.28
5069 6396 4.033702 GCTACCAGTACTCGTTAATTTGGC 59.966 45.833 0.00 0.00 0.00 4.52
5070 6397 4.281898 ACCAGTACTCGTTAATTTGGCT 57.718 40.909 0.00 0.00 0.00 4.75
5071 6398 4.251268 ACCAGTACTCGTTAATTTGGCTC 58.749 43.478 0.00 0.00 0.00 4.70
5072 6399 4.020485 ACCAGTACTCGTTAATTTGGCTCT 60.020 41.667 0.00 0.00 0.00 4.09
5073 6400 5.186409 ACCAGTACTCGTTAATTTGGCTCTA 59.814 40.000 0.00 0.00 0.00 2.43
5074 6401 5.749109 CCAGTACTCGTTAATTTGGCTCTAG 59.251 44.000 0.00 0.00 0.00 2.43
5075 6402 6.331061 CAGTACTCGTTAATTTGGCTCTAGT 58.669 40.000 0.00 0.00 0.00 2.57
5076 6403 6.253727 CAGTACTCGTTAATTTGGCTCTAGTG 59.746 42.308 0.00 0.00 0.00 2.74
5077 6404 5.401531 ACTCGTTAATTTGGCTCTAGTGA 57.598 39.130 0.00 0.00 0.00 3.41
5078 6405 5.790593 ACTCGTTAATTTGGCTCTAGTGAA 58.209 37.500 0.00 0.00 0.00 3.18
5079 6406 5.869888 ACTCGTTAATTTGGCTCTAGTGAAG 59.130 40.000 0.00 0.00 0.00 3.02
5080 6407 6.032956 TCGTTAATTTGGCTCTAGTGAAGA 57.967 37.500 0.00 0.00 0.00 2.87
5093 6420 6.968263 TCTAGTGAAGAGGGAATGTATCTG 57.032 41.667 0.00 0.00 0.00 2.90
5094 6421 5.835819 TCTAGTGAAGAGGGAATGTATCTGG 59.164 44.000 0.00 0.00 0.00 3.86
5095 6422 4.366267 AGTGAAGAGGGAATGTATCTGGT 58.634 43.478 0.00 0.00 0.00 4.00
5096 6423 4.163078 AGTGAAGAGGGAATGTATCTGGTG 59.837 45.833 0.00 0.00 0.00 4.17
5097 6424 3.118261 TGAAGAGGGAATGTATCTGGTGC 60.118 47.826 0.00 0.00 0.00 5.01
5098 6425 2.481441 AGAGGGAATGTATCTGGTGCA 58.519 47.619 0.00 0.00 0.00 4.57
5099 6426 2.171448 AGAGGGAATGTATCTGGTGCAC 59.829 50.000 8.80 8.80 0.00 4.57
5100 6427 1.212935 AGGGAATGTATCTGGTGCACC 59.787 52.381 29.67 29.67 0.00 5.01
5101 6428 1.299541 GGAATGTATCTGGTGCACCG 58.700 55.000 30.07 23.48 39.43 4.94
5102 6429 1.299541 GAATGTATCTGGTGCACCGG 58.700 55.000 35.06 35.06 43.86 5.28
5103 6430 0.107214 AATGTATCTGGTGCACCGGG 60.107 55.000 38.20 28.28 42.72 5.73
5104 6431 1.983119 ATGTATCTGGTGCACCGGGG 61.983 60.000 38.20 25.98 42.72 5.73
5105 6432 3.792736 TATCTGGTGCACCGGGGC 61.793 66.667 38.20 25.59 42.72 5.80
5109 6436 4.612279 TGGTGCACCGGGGCAATT 62.612 61.111 37.35 0.00 46.93 2.32
5110 6437 3.310307 GGTGCACCGGGGCAATTT 61.310 61.111 37.35 0.00 46.93 1.82
5111 6438 2.048316 GTGCACCGGGGCAATTTG 60.048 61.111 37.35 7.40 46.93 2.32
5112 6439 2.522923 TGCACCGGGGCAATTTGT 60.523 55.556 33.52 0.00 41.65 2.83
5113 6440 2.048316 GCACCGGGGCAATTTGTG 60.048 61.111 27.59 0.09 0.00 3.33
5123 6450 3.399879 CAATTTGTGCTACCGGTGC 57.600 52.632 19.93 19.04 0.00 5.01
5124 6451 0.595588 CAATTTGTGCTACCGGTGCA 59.404 50.000 19.93 21.51 38.19 4.57
5144 6471 3.361977 GGTCGCCCGTTGCACATT 61.362 61.111 0.00 0.00 41.33 2.71
5145 6472 2.642700 GTCGCCCGTTGCACATTT 59.357 55.556 0.00 0.00 41.33 2.32
5146 6473 1.579084 GGTCGCCCGTTGCACATTTA 61.579 55.000 0.00 0.00 41.33 1.40
5147 6474 0.238817 GTCGCCCGTTGCACATTTAA 59.761 50.000 0.00 0.00 41.33 1.52
5148 6475 0.952280 TCGCCCGTTGCACATTTAAA 59.048 45.000 0.00 0.00 41.33 1.52
5149 6476 1.337071 TCGCCCGTTGCACATTTAAAA 59.663 42.857 0.00 0.00 41.33 1.52
5150 6477 2.128035 CGCCCGTTGCACATTTAAAAA 58.872 42.857 0.00 0.00 41.33 1.94
5151 6478 2.734079 CGCCCGTTGCACATTTAAAAAT 59.266 40.909 0.00 0.00 41.33 1.82
5182 6509 5.819825 AAATCCGGAAAAGATTCTAGTGC 57.180 39.130 9.01 0.00 32.80 4.40
5183 6510 3.973206 TCCGGAAAAGATTCTAGTGCA 57.027 42.857 0.00 0.00 35.79 4.57
5184 6511 4.487714 TCCGGAAAAGATTCTAGTGCAT 57.512 40.909 0.00 0.00 35.79 3.96
5185 6512 4.843728 TCCGGAAAAGATTCTAGTGCATT 58.156 39.130 0.00 0.00 35.79 3.56
5186 6513 4.635765 TCCGGAAAAGATTCTAGTGCATTG 59.364 41.667 0.00 0.00 35.79 2.82
5187 6514 4.635765 CCGGAAAAGATTCTAGTGCATTGA 59.364 41.667 0.00 0.00 35.79 2.57
5188 6515 5.447818 CCGGAAAAGATTCTAGTGCATTGAC 60.448 44.000 0.00 0.00 35.79 3.18
5189 6516 5.122239 CGGAAAAGATTCTAGTGCATTGACA 59.878 40.000 0.00 0.00 35.79 3.58
5190 6517 6.317857 GGAAAAGATTCTAGTGCATTGACAC 58.682 40.000 0.00 3.86 36.98 3.67
5191 6518 6.072508 GGAAAAGATTCTAGTGCATTGACACA 60.073 38.462 11.85 0.00 38.07 3.72
5192 6519 6.882610 AAAGATTCTAGTGCATTGACACAA 57.117 33.333 11.85 0.00 43.23 3.33
5193 6520 5.869753 AGATTCTAGTGCATTGACACAAC 57.130 39.130 11.85 0.00 43.23 3.32
5194 6521 5.308014 AGATTCTAGTGCATTGACACAACA 58.692 37.500 11.85 0.00 43.23 3.33
5195 6522 5.942236 AGATTCTAGTGCATTGACACAACAT 59.058 36.000 11.85 1.79 43.23 2.71
5196 6523 5.611796 TTCTAGTGCATTGACACAACATC 57.388 39.130 11.85 0.00 43.23 3.06
5197 6524 4.640364 TCTAGTGCATTGACACAACATCA 58.360 39.130 11.85 0.00 43.23 3.07
5198 6525 5.062528 TCTAGTGCATTGACACAACATCAA 58.937 37.500 11.85 0.00 43.23 2.57
5199 6526 4.859304 AGTGCATTGACACAACATCAAT 57.141 36.364 11.85 0.00 45.57 2.57
5200 6527 5.963176 AGTGCATTGACACAACATCAATA 57.037 34.783 11.85 0.00 43.39 1.90
5201 6528 6.519679 AGTGCATTGACACAACATCAATAT 57.480 33.333 11.85 0.00 43.39 1.28
5202 6529 6.927416 AGTGCATTGACACAACATCAATATT 58.073 32.000 11.85 0.00 43.39 1.28
5203 6530 7.380536 AGTGCATTGACACAACATCAATATTT 58.619 30.769 11.85 0.00 43.39 1.40
5204 6531 7.329962 AGTGCATTGACACAACATCAATATTTG 59.670 33.333 11.85 0.00 43.39 2.32
5205 6532 7.328982 GTGCATTGACACAACATCAATATTTGA 59.671 33.333 0.00 0.00 43.39 2.69
5206 6533 7.871463 TGCATTGACACAACATCAATATTTGAA 59.129 29.630 0.17 0.00 43.39 2.69
5207 6534 8.710551 GCATTGACACAACATCAATATTTGAAA 58.289 29.630 0.17 0.00 43.39 2.69
5209 6536 9.761504 ATTGACACAACATCAATATTTGAAACA 57.238 25.926 0.00 0.00 43.41 2.83
5210 6537 9.761504 TTGACACAACATCAATATTTGAAACAT 57.238 25.926 0.00 0.00 43.95 2.71
5211 6538 9.761504 TGACACAACATCAATATTTGAAACATT 57.238 25.926 0.00 0.00 43.95 2.71
5213 6540 8.497554 ACACAACATCAATATTTGAAACATTGC 58.502 29.630 4.13 0.00 43.95 3.56
5214 6541 8.714179 CACAACATCAATATTTGAAACATTGCT 58.286 29.630 4.13 0.00 43.95 3.91
5215 6542 8.928733 ACAACATCAATATTTGAAACATTGCTC 58.071 29.630 4.13 0.00 43.95 4.26
5216 6543 7.745022 ACATCAATATTTGAAACATTGCTCG 57.255 32.000 4.13 0.00 43.95 5.03
5217 6544 7.537715 ACATCAATATTTGAAACATTGCTCGA 58.462 30.769 4.13 0.00 43.95 4.04
5218 6545 7.699391 ACATCAATATTTGAAACATTGCTCGAG 59.301 33.333 8.45 8.45 43.95 4.04
5219 6546 7.376435 TCAATATTTGAAACATTGCTCGAGA 57.624 32.000 18.75 0.00 36.59 4.04
5220 6547 7.988737 TCAATATTTGAAACATTGCTCGAGAT 58.011 30.769 18.75 0.00 36.59 2.75
5221 6548 9.108284 TCAATATTTGAAACATTGCTCGAGATA 57.892 29.630 18.75 2.54 36.59 1.98
5222 6549 9.162793 CAATATTTGAAACATTGCTCGAGATAC 57.837 33.333 18.75 0.00 0.00 2.24
5223 6550 6.741992 ATTTGAAACATTGCTCGAGATACA 57.258 33.333 18.75 1.12 0.00 2.29
5224 6551 6.552859 TTTGAAACATTGCTCGAGATACAA 57.447 33.333 18.75 11.56 0.00 2.41
5225 6552 6.552859 TTGAAACATTGCTCGAGATACAAA 57.447 33.333 18.75 2.00 0.00 2.83
5226 6553 6.552859 TGAAACATTGCTCGAGATACAAAA 57.447 33.333 18.75 0.13 0.00 2.44
5227 6554 6.964908 TGAAACATTGCTCGAGATACAAAAA 58.035 32.000 18.75 0.00 0.00 1.94
5228 6555 6.855914 TGAAACATTGCTCGAGATACAAAAAC 59.144 34.615 18.75 0.00 0.00 2.43
5229 6556 5.940192 ACATTGCTCGAGATACAAAAACA 57.060 34.783 18.75 0.00 0.00 2.83
5230 6557 6.312399 ACATTGCTCGAGATACAAAAACAA 57.688 33.333 18.75 7.70 0.00 2.83
5231 6558 6.142817 ACATTGCTCGAGATACAAAAACAAC 58.857 36.000 18.75 0.00 0.00 3.32
5232 6559 5.743026 TTGCTCGAGATACAAAAACAACA 57.257 34.783 18.75 0.00 0.00 3.33
5233 6560 5.743026 TGCTCGAGATACAAAAACAACAA 57.257 34.783 18.75 0.00 0.00 2.83
5234 6561 6.125327 TGCTCGAGATACAAAAACAACAAA 57.875 33.333 18.75 0.00 0.00 2.83
5235 6562 6.734137 TGCTCGAGATACAAAAACAACAAAT 58.266 32.000 18.75 0.00 0.00 2.32
5236 6563 7.199766 TGCTCGAGATACAAAAACAACAAATT 58.800 30.769 18.75 0.00 0.00 1.82
5237 6564 7.704472 TGCTCGAGATACAAAAACAACAAATTT 59.296 29.630 18.75 0.00 0.00 1.82
5238 6565 7.998212 GCTCGAGATACAAAAACAACAAATTTG 59.002 33.333 18.75 16.67 39.38 2.32
5239 6566 9.232082 CTCGAGATACAAAAACAACAAATTTGA 57.768 29.630 24.64 0.00 37.46 2.69
5240 6567 9.015577 TCGAGATACAAAAACAACAAATTTGAC 57.984 29.630 24.64 0.76 37.46 3.18
5241 6568 8.802856 CGAGATACAAAAACAACAAATTTGACA 58.197 29.630 24.64 0.00 37.46 3.58
5242 6569 9.900264 GAGATACAAAAACAACAAATTTGACAC 57.100 29.630 24.64 1.97 37.46 3.67
5243 6570 9.651913 AGATACAAAAACAACAAATTTGACACT 57.348 25.926 24.64 0.00 37.46 3.55
5244 6571 9.687717 GATACAAAAACAACAAATTTGACACTG 57.312 29.630 24.64 16.17 37.46 3.66
5245 6572 7.721286 ACAAAAACAACAAATTTGACACTGA 57.279 28.000 24.64 0.00 37.46 3.41
5246 6573 8.147642 ACAAAAACAACAAATTTGACACTGAA 57.852 26.923 24.64 0.00 37.46 3.02
5247 6574 8.782144 ACAAAAACAACAAATTTGACACTGAAT 58.218 25.926 24.64 7.90 37.46 2.57
5250 6577 9.651913 AAAACAACAAATTTGACACTGAATAGT 57.348 25.926 24.64 4.95 37.75 2.12
5252 6579 9.730420 AACAACAAATTTGACACTGAATAGTAC 57.270 29.630 24.64 0.00 34.74 2.73
5253 6580 8.898761 ACAACAAATTTGACACTGAATAGTACA 58.101 29.630 24.64 0.00 34.74 2.90
5254 6581 9.897744 CAACAAATTTGACACTGAATAGTACAT 57.102 29.630 24.64 0.00 34.74 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.824109 GAGTCCCGGATGTGATCACA 59.176 55.000 29.67 29.67 46.44 3.58
427 429 3.981071 AGGATTTGTCACTCCGATTGA 57.019 42.857 0.00 0.00 36.62 2.57
495 497 7.876068 CGTAAATGGGTGATTATAAAGGAGCTA 59.124 37.037 0.00 0.00 0.00 3.32
535 537 1.604278 GGAGGAACACTTTGTGTGCTC 59.396 52.381 8.51 9.75 46.79 4.26
931 933 4.373116 GGTTCGGCGAGCAGTGGA 62.373 66.667 24.66 0.00 0.00 4.02
941 943 3.733960 GCGAGGGTTTGGTTCGGC 61.734 66.667 0.00 0.00 35.05 5.54
1086 1094 2.485795 GCCGAGATCCAGCGTCTCT 61.486 63.158 8.90 0.00 39.92 3.10
1330 1338 1.676014 GCTGTCGACAATAGCAAGGGT 60.676 52.381 20.49 0.00 41.48 4.34
1516 1524 1.194781 ACGAGGGTGTTGATCCAGCT 61.195 55.000 0.00 0.00 33.43 4.24
1525 1533 2.030562 CTTGGCGACGAGGGTGTT 59.969 61.111 0.00 0.00 38.28 3.32
1579 1587 1.596934 GGAGGCACAGGTCAATCGA 59.403 57.895 0.00 0.00 0.00 3.59
1591 1599 3.249189 GAGTGTGGTGGGGAGGCA 61.249 66.667 0.00 0.00 0.00 4.75
1600 1608 1.301244 CGCAGCTGAAGAGTGTGGT 60.301 57.895 20.43 0.00 0.00 4.16
1637 1645 1.986575 GAGCATGAAGACGCCAAGGC 61.987 60.000 0.00 0.00 37.85 4.35
1641 1649 2.268920 GGGAGCATGAAGACGCCA 59.731 61.111 0.00 0.00 0.00 5.69
1649 1657 2.981302 CGGTGTCTGGGAGCATGA 59.019 61.111 0.00 0.00 0.00 3.07
1650 1658 2.821366 GCGGTGTCTGGGAGCATG 60.821 66.667 0.00 0.00 0.00 4.06
1711 1719 3.718434 TCCATGGTATTCAAGCAGAGGAT 59.282 43.478 12.58 0.00 38.24 3.24
1712 1720 3.114606 TCCATGGTATTCAAGCAGAGGA 58.885 45.455 12.58 0.00 39.83 3.71
1726 1734 1.137872 GAGATCACGCTCTTCCATGGT 59.862 52.381 12.58 0.00 32.16 3.55
1727 1735 1.863267 GAGATCACGCTCTTCCATGG 58.137 55.000 4.97 4.97 32.16 3.66
1786 1794 1.619432 GGCCTGGTTTCCCATGATGAA 60.619 52.381 0.00 0.00 40.90 2.57
1864 1872 5.831449 ACATCGATGTCCTCCGAGAAGGA 62.831 52.174 25.18 0.00 41.52 3.36
1871 1879 0.528466 CACCACATCGATGTCCTCCG 60.528 60.000 27.79 15.94 39.39 4.63
1926 1934 4.161295 TGGGAATGGGCGAGCTCG 62.161 66.667 31.37 31.37 43.27 5.03
1927 1935 2.514824 GTGGGAATGGGCGAGCTC 60.515 66.667 2.73 2.73 0.00 4.09
1928 1936 3.329889 TGTGGGAATGGGCGAGCT 61.330 61.111 0.00 0.00 0.00 4.09
1929 1937 2.825836 CTGTGGGAATGGGCGAGC 60.826 66.667 0.00 0.00 0.00 5.03
1930 1938 1.987807 ATCCTGTGGGAATGGGCGAG 61.988 60.000 0.00 0.00 45.78 5.03
1933 1941 1.456331 CCATCCTGTGGGAATGGGC 60.456 63.158 0.00 0.00 45.78 5.36
1942 1950 3.535561 GAGTGGTATTGTCCATCCTGTG 58.464 50.000 0.00 0.00 39.81 3.66
1944 1952 2.505407 TGGAGTGGTATTGTCCATCCTG 59.495 50.000 0.00 0.00 39.81 3.86
1945 1953 2.774234 CTGGAGTGGTATTGTCCATCCT 59.226 50.000 0.00 0.00 39.66 3.24
1946 1954 2.158755 CCTGGAGTGGTATTGTCCATCC 60.159 54.545 0.00 0.00 39.66 3.51
1947 1955 2.158755 CCCTGGAGTGGTATTGTCCATC 60.159 54.545 0.00 0.00 39.66 3.51
1948 1956 1.846439 CCCTGGAGTGGTATTGTCCAT 59.154 52.381 0.00 0.00 39.66 3.41
1949 1957 1.285280 CCCTGGAGTGGTATTGTCCA 58.715 55.000 0.00 0.00 38.07 4.02
1950 1958 0.546598 CCCCTGGAGTGGTATTGTCC 59.453 60.000 0.00 0.00 0.00 4.02
1951 1959 0.107165 GCCCCTGGAGTGGTATTGTC 60.107 60.000 0.00 0.00 0.00 3.18
1952 1960 1.910580 CGCCCCTGGAGTGGTATTGT 61.911 60.000 0.00 0.00 0.00 2.71
1953 1961 1.153168 CGCCCCTGGAGTGGTATTG 60.153 63.158 0.00 0.00 0.00 1.90
1954 1962 2.375345 CCGCCCCTGGAGTGGTATT 61.375 63.158 0.00 0.00 0.00 1.89
1955 1963 2.768344 CCGCCCCTGGAGTGGTAT 60.768 66.667 0.00 0.00 0.00 2.73
1956 1964 4.000620 TCCGCCCCTGGAGTGGTA 62.001 66.667 7.73 0.00 36.26 3.25
1997 2008 3.904571 TGCATGTCATTGTCTTCTTTGC 58.095 40.909 0.00 0.00 0.00 3.68
1998 2009 5.981315 ACTTTGCATGTCATTGTCTTCTTTG 59.019 36.000 0.00 0.00 0.00 2.77
1999 2010 6.152932 ACTTTGCATGTCATTGTCTTCTTT 57.847 33.333 0.00 0.00 0.00 2.52
2030 2041 3.071602 CCCTTGGTATGGTCATAGTCAGG 59.928 52.174 0.00 0.00 0.00 3.86
2127 2139 6.037830 GCCTTTATTCTATGTGTTTTAGGCGA 59.962 38.462 0.00 0.00 35.61 5.54
2158 2170 1.626654 CGGAAGCGCGCCATATAAGG 61.627 60.000 30.33 5.28 0.00 2.69
2275 2287 5.352569 GGGATGATTAGAAATCTACATGCCG 59.647 44.000 12.58 0.00 35.42 5.69
2278 2290 7.108847 GGAGGGGATGATTAGAAATCTACATG 58.891 42.308 0.00 0.00 0.00 3.21
2386 2665 7.534723 ACTCACGCCAAATCTAAGGTATATA 57.465 36.000 0.00 0.00 0.00 0.86
2387 2666 6.420913 ACTCACGCCAAATCTAAGGTATAT 57.579 37.500 0.00 0.00 0.00 0.86
2515 2794 4.099113 AGAATACTAGTAAACTGGTCCGCC 59.901 45.833 6.70 0.00 38.64 6.13
2554 2833 3.165875 TGTGAGTCTCCTCGATTCCTTT 58.834 45.455 0.00 0.00 40.85 3.11
2690 2972 2.053244 ACAATCTAGGGCATCCTCTGG 58.947 52.381 0.00 0.00 43.66 3.86
3211 3493 2.683933 AGTGGTACAGGGGCGGAG 60.684 66.667 0.00 0.00 41.80 4.63
3212 3494 2.682494 GAGTGGTACAGGGGCGGA 60.682 66.667 0.00 0.00 41.80 5.54
3213 3495 3.000819 TGAGTGGTACAGGGGCGG 61.001 66.667 0.00 0.00 41.80 6.13
3214 3496 2.579201 CTGAGTGGTACAGGGGCG 59.421 66.667 0.00 0.00 41.80 6.13
3215 3497 2.269241 GCTGAGTGGTACAGGGGC 59.731 66.667 0.00 0.00 41.80 5.80
3216 3498 0.325296 TAGGCTGAGTGGTACAGGGG 60.325 60.000 0.00 0.00 41.80 4.79
3217 3499 1.115467 CTAGGCTGAGTGGTACAGGG 58.885 60.000 0.00 0.00 41.80 4.45
3218 3500 1.115467 CCTAGGCTGAGTGGTACAGG 58.885 60.000 0.00 0.00 41.80 4.00
3219 3501 2.145397 TCCTAGGCTGAGTGGTACAG 57.855 55.000 2.96 0.00 41.80 2.74
3220 3502 2.024369 TGATCCTAGGCTGAGTGGTACA 60.024 50.000 2.96 0.00 0.00 2.90
3221 3503 2.667470 TGATCCTAGGCTGAGTGGTAC 58.333 52.381 2.96 0.00 0.00 3.34
3222 3504 3.052869 TCTTGATCCTAGGCTGAGTGGTA 60.053 47.826 2.96 0.00 0.00 3.25
3223 3505 2.114616 CTTGATCCTAGGCTGAGTGGT 58.885 52.381 2.96 0.00 0.00 4.16
3230 3512 0.466124 GCCGTTCTTGATCCTAGGCT 59.534 55.000 2.96 0.00 39.92 4.58
3231 3513 0.876342 CGCCGTTCTTGATCCTAGGC 60.876 60.000 2.96 0.00 39.68 3.93
3234 3516 0.535335 AAGCGCCGTTCTTGATCCTA 59.465 50.000 2.29 0.00 0.00 2.94
3250 3532 1.680207 GCCAATCTTGATCCTGGAAGC 59.320 52.381 0.00 0.00 0.00 3.86
3309 3591 2.124151 CCCAATTCCTGCCCTCCG 60.124 66.667 0.00 0.00 0.00 4.63
3453 3891 1.062488 AGGGGCAGTGTTCTCCTTGT 61.062 55.000 0.00 0.00 0.00 3.16
3465 3903 1.207791 AATCTGGACACTAGGGGCAG 58.792 55.000 0.00 0.00 0.00 4.85
3533 3971 3.625313 GGGAAGCATCTAAGAAAGTCAGC 59.375 47.826 0.00 0.00 0.00 4.26
3537 3975 4.336280 GTTGGGGAAGCATCTAAGAAAGT 58.664 43.478 0.00 0.00 0.00 2.66
3544 3982 0.918983 CCAGGTTGGGGAAGCATCTA 59.081 55.000 0.00 0.00 32.67 1.98
3635 4188 7.429633 CATGCTAGATATACCATAGCCACTAC 58.570 42.308 0.00 0.00 40.97 2.73
3681 4785 2.462456 TCACAACTCTGACCATGCTC 57.538 50.000 0.00 0.00 0.00 4.26
3743 4882 9.313118 CACATAACTACATATTCACAGCTTACA 57.687 33.333 0.00 0.00 0.00 2.41
3744 4883 8.276325 GCACATAACTACATATTCACAGCTTAC 58.724 37.037 0.00 0.00 0.00 2.34
3746 4885 7.050377 AGCACATAACTACATATTCACAGCTT 58.950 34.615 0.00 0.00 0.00 3.74
3748 4887 6.479990 TGAGCACATAACTACATATTCACAGC 59.520 38.462 0.00 0.00 0.00 4.40
3749 4888 8.599055 ATGAGCACATAACTACATATTCACAG 57.401 34.615 0.00 0.00 34.71 3.66
3806 5078 5.803967 GGACTGCAAATGAAATCAATCAGTC 59.196 40.000 18.65 18.65 44.84 3.51
3850 5135 1.421268 TGAGATTGACCTTGCCAGTGT 59.579 47.619 0.00 0.00 0.00 3.55
3878 5163 3.474570 ATCCTCCTGCGGTCCTGC 61.475 66.667 0.00 0.00 0.00 4.85
3879 5164 2.503061 CATCCTCCTGCGGTCCTG 59.497 66.667 0.00 0.00 0.00 3.86
3880 5165 2.765807 CCATCCTCCTGCGGTCCT 60.766 66.667 0.00 0.00 0.00 3.85
3881 5166 3.083997 ACCATCCTCCTGCGGTCC 61.084 66.667 0.00 0.00 0.00 4.46
3882 5167 2.501610 GACCATCCTCCTGCGGTC 59.498 66.667 0.00 0.00 41.08 4.79
3883 5168 3.083997 GGACCATCCTCCTGCGGT 61.084 66.667 0.00 0.00 32.53 5.68
3884 5169 3.866582 GGGACCATCCTCCTGCGG 61.867 72.222 0.00 0.00 36.57 5.69
3885 5170 2.388890 GATGGGACCATCCTCCTGCG 62.389 65.000 18.49 0.00 45.06 5.18
4064 5349 0.822164 GGCTTCAGCTTGGCATTCAT 59.178 50.000 0.00 0.00 41.70 2.57
4459 5766 1.342076 TGGACGAACCAGAGAGGCTAT 60.342 52.381 0.00 0.00 44.64 2.97
4500 5807 4.682787 TGACAACAACAACAACAACAACA 58.317 34.783 0.00 0.00 0.00 3.33
4501 5808 4.375908 GCTGACAACAACAACAACAACAAC 60.376 41.667 0.00 0.00 0.00 3.32
4502 5809 3.738282 GCTGACAACAACAACAACAACAA 59.262 39.130 0.00 0.00 0.00 2.83
4504 5811 3.312828 TGCTGACAACAACAACAACAAC 58.687 40.909 0.00 0.00 0.00 3.32
4506 5813 3.192212 TCATGCTGACAACAACAACAACA 59.808 39.130 0.00 0.00 0.00 3.33
4507 5814 3.768406 TCATGCTGACAACAACAACAAC 58.232 40.909 0.00 0.00 0.00 3.32
4508 5815 4.446994 TTCATGCTGACAACAACAACAA 57.553 36.364 0.00 0.00 0.00 2.83
4596 5909 7.984050 ACAACAACAACAACATAATGATTTGGA 59.016 29.630 0.00 0.00 0.00 3.53
4613 5926 5.637006 AGAACTGCTAACAACAACAACAA 57.363 34.783 0.00 0.00 0.00 2.83
4614 5927 5.398169 CAAGAACTGCTAACAACAACAACA 58.602 37.500 0.00 0.00 0.00 3.33
4615 5928 5.932021 CAAGAACTGCTAACAACAACAAC 57.068 39.130 0.00 0.00 0.00 3.32
4698 6015 6.486657 CCTGTGAACTCAAGAACTCCATAAAA 59.513 38.462 0.00 0.00 0.00 1.52
4736 6053 8.874156 TCAAGCCAAGTTCATCAGAGTATATAT 58.126 33.333 0.00 0.00 0.00 0.86
4750 6067 0.312102 AAAGCGCTCAAGCCAAGTTC 59.688 50.000 12.06 0.00 37.91 3.01
4751 6068 1.604604 TAAAGCGCTCAAGCCAAGTT 58.395 45.000 12.06 0.00 37.91 2.66
4814 6134 5.163550 CCAAACTATTGCTACCCTTTTAGCC 60.164 44.000 0.00 0.00 43.43 3.93
4828 6148 9.832445 ATTATATATCCTACGGCCAAACTATTG 57.168 33.333 2.24 0.00 36.25 1.90
4873 6193 6.682113 GCGATAGTAAACAGAACTGATGGGTA 60.682 42.308 8.87 0.00 39.35 3.69
5017 6344 9.470399 TGTACTATGTCATCTACCTTACTTTCA 57.530 33.333 0.00 0.00 0.00 2.69
5022 6349 8.361139 AGCATTGTACTATGTCATCTACCTTAC 58.639 37.037 16.86 0.00 0.00 2.34
5031 6358 6.485830 ACTGGTAGCATTGTACTATGTCAT 57.514 37.500 16.86 7.74 0.00 3.06
5046 6373 4.033702 GCCAAATTAACGAGTACTGGTAGC 59.966 45.833 11.21 2.96 0.00 3.58
5047 6374 5.416947 AGCCAAATTAACGAGTACTGGTAG 58.583 41.667 11.21 0.00 0.00 3.18
5048 6375 5.186409 AGAGCCAAATTAACGAGTACTGGTA 59.814 40.000 11.21 0.00 0.00 3.25
5049 6376 4.020485 AGAGCCAAATTAACGAGTACTGGT 60.020 41.667 4.48 4.48 0.00 4.00
5050 6377 4.504858 AGAGCCAAATTAACGAGTACTGG 58.495 43.478 0.00 0.25 0.00 4.00
5051 6378 6.253727 CACTAGAGCCAAATTAACGAGTACTG 59.746 42.308 0.00 0.00 0.00 2.74
5052 6379 6.152323 TCACTAGAGCCAAATTAACGAGTACT 59.848 38.462 0.00 0.00 0.00 2.73
5053 6380 6.327934 TCACTAGAGCCAAATTAACGAGTAC 58.672 40.000 0.00 0.00 0.00 2.73
5054 6381 6.519679 TCACTAGAGCCAAATTAACGAGTA 57.480 37.500 0.00 0.00 0.00 2.59
5055 6382 5.401531 TCACTAGAGCCAAATTAACGAGT 57.598 39.130 0.00 0.00 0.00 4.18
5056 6383 6.100004 TCTTCACTAGAGCCAAATTAACGAG 58.900 40.000 0.00 0.00 0.00 4.18
5057 6384 6.032956 TCTTCACTAGAGCCAAATTAACGA 57.967 37.500 0.00 0.00 0.00 3.85
5058 6385 6.337853 CTCTTCACTAGAGCCAAATTAACG 57.662 41.667 0.00 0.00 43.73 3.18
5070 6397 5.835819 CCAGATACATTCCCTCTTCACTAGA 59.164 44.000 0.00 0.00 0.00 2.43
5071 6398 5.600484 ACCAGATACATTCCCTCTTCACTAG 59.400 44.000 0.00 0.00 0.00 2.57
5072 6399 5.363868 CACCAGATACATTCCCTCTTCACTA 59.636 44.000 0.00 0.00 0.00 2.74
5073 6400 4.163078 CACCAGATACATTCCCTCTTCACT 59.837 45.833 0.00 0.00 0.00 3.41
5074 6401 4.446371 CACCAGATACATTCCCTCTTCAC 58.554 47.826 0.00 0.00 0.00 3.18
5075 6402 3.118261 GCACCAGATACATTCCCTCTTCA 60.118 47.826 0.00 0.00 0.00 3.02
5076 6403 3.118261 TGCACCAGATACATTCCCTCTTC 60.118 47.826 0.00 0.00 0.00 2.87
5077 6404 2.846206 TGCACCAGATACATTCCCTCTT 59.154 45.455 0.00 0.00 0.00 2.85
5078 6405 2.171448 GTGCACCAGATACATTCCCTCT 59.829 50.000 5.22 0.00 0.00 3.69
5079 6406 2.565841 GTGCACCAGATACATTCCCTC 58.434 52.381 5.22 0.00 0.00 4.30
5080 6407 1.212935 GGTGCACCAGATACATTCCCT 59.787 52.381 31.23 0.00 35.64 4.20
5081 6408 1.680338 GGTGCACCAGATACATTCCC 58.320 55.000 31.23 0.00 35.64 3.97
5082 6409 1.299541 CGGTGCACCAGATACATTCC 58.700 55.000 34.16 3.99 35.14 3.01
5083 6410 1.299541 CCGGTGCACCAGATACATTC 58.700 55.000 34.16 4.51 35.14 2.67
5084 6411 0.107214 CCCGGTGCACCAGATACATT 60.107 55.000 34.16 0.00 35.14 2.71
5085 6412 1.526887 CCCGGTGCACCAGATACAT 59.473 57.895 34.16 0.00 35.14 2.29
5086 6413 2.665089 CCCCGGTGCACCAGATACA 61.665 63.158 34.16 0.00 35.14 2.29
5087 6414 2.189521 CCCCGGTGCACCAGATAC 59.810 66.667 34.16 7.59 35.14 2.24
5088 6415 3.792736 GCCCCGGTGCACCAGATA 61.793 66.667 34.16 0.00 35.14 1.98
5092 6419 4.612279 AATTGCCCCGGTGCACCA 62.612 61.111 34.16 15.28 41.88 4.17
5093 6420 3.310307 AAATTGCCCCGGTGCACC 61.310 61.111 26.78 26.78 41.88 5.01
5094 6421 2.048316 CAAATTGCCCCGGTGCAC 60.048 61.111 12.48 8.80 41.88 4.57
5095 6422 2.522923 ACAAATTGCCCCGGTGCA 60.523 55.556 7.80 7.80 40.07 4.57
5096 6423 2.048316 CACAAATTGCCCCGGTGC 60.048 61.111 0.23 0.23 0.00 5.01
5097 6424 2.048316 GCACAAATTGCCCCGGTG 60.048 61.111 0.00 0.00 46.63 4.94
5105 6432 0.595588 TGCACCGGTAGCACAAATTG 59.404 50.000 22.47 2.66 37.02 2.32
5106 6433 3.028916 TGCACCGGTAGCACAAATT 57.971 47.368 22.47 0.00 37.02 1.82
5107 6434 4.811206 TGCACCGGTAGCACAAAT 57.189 50.000 22.47 0.00 37.02 2.32
5128 6455 7.559370 CATTTTTAAATGTGCAACGGGCGAC 62.559 44.000 6.97 0.00 42.39 5.19
5129 6456 5.609014 CATTTTTAAATGTGCAACGGGCGA 61.609 41.667 6.97 0.00 42.39 5.54
5130 6457 3.422862 CATTTTTAAATGTGCAACGGGCG 60.423 43.478 6.97 0.00 42.39 6.13
5131 6458 4.064137 CATTTTTAAATGTGCAACGGGC 57.936 40.909 6.97 0.00 42.39 6.13
5158 6485 6.208599 TGCACTAGAATCTTTTCCGGATTTTT 59.791 34.615 4.15 0.00 34.09 1.94
5159 6486 5.710099 TGCACTAGAATCTTTTCCGGATTTT 59.290 36.000 4.15 0.00 34.09 1.82
5160 6487 5.253330 TGCACTAGAATCTTTTCCGGATTT 58.747 37.500 4.15 0.00 34.09 2.17
5161 6488 4.843728 TGCACTAGAATCTTTTCCGGATT 58.156 39.130 4.15 0.00 36.29 3.01
5162 6489 4.487714 TGCACTAGAATCTTTTCCGGAT 57.512 40.909 4.15 0.00 31.84 4.18
5163 6490 3.973206 TGCACTAGAATCTTTTCCGGA 57.027 42.857 0.00 0.00 31.84 5.14
5164 6491 4.635765 TCAATGCACTAGAATCTTTTCCGG 59.364 41.667 0.00 0.00 31.84 5.14
5165 6492 5.122239 TGTCAATGCACTAGAATCTTTTCCG 59.878 40.000 0.00 0.00 31.84 4.30
5166 6493 6.072508 TGTGTCAATGCACTAGAATCTTTTCC 60.073 38.462 0.00 0.00 39.89 3.13
5167 6494 6.902341 TGTGTCAATGCACTAGAATCTTTTC 58.098 36.000 0.00 0.00 39.89 2.29
5168 6495 6.882610 TGTGTCAATGCACTAGAATCTTTT 57.117 33.333 0.00 0.00 39.89 2.27
5169 6496 6.262944 TGTTGTGTCAATGCACTAGAATCTTT 59.737 34.615 0.00 0.00 39.89 2.52
5170 6497 5.764686 TGTTGTGTCAATGCACTAGAATCTT 59.235 36.000 0.00 0.00 39.89 2.40
5171 6498 5.308014 TGTTGTGTCAATGCACTAGAATCT 58.692 37.500 0.00 0.00 39.89 2.40
5172 6499 5.611796 TGTTGTGTCAATGCACTAGAATC 57.388 39.130 0.00 0.00 39.89 2.52
5173 6500 5.706833 TGATGTTGTGTCAATGCACTAGAAT 59.293 36.000 0.00 0.73 39.89 2.40
5174 6501 5.062528 TGATGTTGTGTCAATGCACTAGAA 58.937 37.500 0.00 0.00 39.89 2.10
5175 6502 4.640364 TGATGTTGTGTCAATGCACTAGA 58.360 39.130 0.00 1.91 39.89 2.43
5176 6503 5.361135 TTGATGTTGTGTCAATGCACTAG 57.639 39.130 0.00 0.00 39.89 2.57
5177 6504 5.963176 ATTGATGTTGTGTCAATGCACTA 57.037 34.783 0.00 0.20 42.87 2.74
5178 6505 4.859304 ATTGATGTTGTGTCAATGCACT 57.141 36.364 0.00 0.00 42.87 4.40
5179 6506 7.328982 TCAAATATTGATGTTGTGTCAATGCAC 59.671 33.333 10.65 1.80 43.90 4.57
5180 6507 7.376615 TCAAATATTGATGTTGTGTCAATGCA 58.623 30.769 10.65 0.00 43.90 3.96
5181 6508 7.815398 TCAAATATTGATGTTGTGTCAATGC 57.185 32.000 10.65 0.00 43.90 3.56
5183 6510 9.761504 TGTTTCAAATATTGATGTTGTGTCAAT 57.238 25.926 6.59 6.59 45.48 2.57
5184 6511 9.761504 ATGTTTCAAATATTGATGTTGTGTCAA 57.238 25.926 0.00 0.00 39.84 3.18
5185 6512 9.761504 AATGTTTCAAATATTGATGTTGTGTCA 57.238 25.926 0.00 0.00 39.84 3.58
5187 6514 8.497554 GCAATGTTTCAAATATTGATGTTGTGT 58.502 29.630 20.45 0.00 40.99 3.72
5188 6515 8.714179 AGCAATGTTTCAAATATTGATGTTGTG 58.286 29.630 20.45 0.00 40.99 3.33
5189 6516 8.836268 AGCAATGTTTCAAATATTGATGTTGT 57.164 26.923 20.45 0.00 40.99 3.32
5190 6517 8.105742 CGAGCAATGTTTCAAATATTGATGTTG 58.894 33.333 20.45 5.65 38.46 3.33
5191 6518 8.028354 TCGAGCAATGTTTCAAATATTGATGTT 58.972 29.630 20.45 5.31 38.46 2.71
5192 6519 7.537715 TCGAGCAATGTTTCAAATATTGATGT 58.462 30.769 20.45 6.54 38.46 3.06
5193 6520 7.911727 TCTCGAGCAATGTTTCAAATATTGATG 59.088 33.333 20.45 10.78 38.46 3.07
5194 6521 7.988737 TCTCGAGCAATGTTTCAAATATTGAT 58.011 30.769 20.45 15.51 40.53 2.57
5195 6522 7.376435 TCTCGAGCAATGTTTCAAATATTGA 57.624 32.000 20.45 2.10 40.99 2.57
5196 6523 9.162793 GTATCTCGAGCAATGTTTCAAATATTG 57.837 33.333 13.75 13.75 41.31 1.90
5197 6524 8.892723 TGTATCTCGAGCAATGTTTCAAATATT 58.107 29.630 7.81 0.00 0.00 1.28
5198 6525 8.437360 TGTATCTCGAGCAATGTTTCAAATAT 57.563 30.769 7.81 0.00 0.00 1.28
5199 6526 7.841915 TGTATCTCGAGCAATGTTTCAAATA 57.158 32.000 7.81 0.00 0.00 1.40
5200 6527 6.741992 TGTATCTCGAGCAATGTTTCAAAT 57.258 33.333 7.81 0.00 0.00 2.32
5201 6528 6.552859 TTGTATCTCGAGCAATGTTTCAAA 57.447 33.333 7.81 0.00 0.00 2.69
5202 6529 6.552859 TTTGTATCTCGAGCAATGTTTCAA 57.447 33.333 7.81 2.14 0.00 2.69
5203 6530 6.552859 TTTTGTATCTCGAGCAATGTTTCA 57.447 33.333 7.81 0.00 0.00 2.69
5204 6531 6.855914 TGTTTTTGTATCTCGAGCAATGTTTC 59.144 34.615 7.81 0.00 0.00 2.78
5205 6532 6.734137 TGTTTTTGTATCTCGAGCAATGTTT 58.266 32.000 7.81 0.00 0.00 2.83
5206 6533 6.312399 TGTTTTTGTATCTCGAGCAATGTT 57.688 33.333 7.81 0.00 0.00 2.71
5207 6534 5.940192 TGTTTTTGTATCTCGAGCAATGT 57.060 34.783 7.81 0.00 0.00 2.71
5208 6535 6.142139 TGTTGTTTTTGTATCTCGAGCAATG 58.858 36.000 7.81 0.00 0.00 2.82
5209 6536 6.312399 TGTTGTTTTTGTATCTCGAGCAAT 57.688 33.333 7.81 0.00 0.00 3.56
5210 6537 5.743026 TGTTGTTTTTGTATCTCGAGCAA 57.257 34.783 7.81 3.53 0.00 3.91
5211 6538 5.743026 TTGTTGTTTTTGTATCTCGAGCA 57.257 34.783 7.81 0.00 0.00 4.26
5212 6539 7.623268 AATTTGTTGTTTTTGTATCTCGAGC 57.377 32.000 7.81 0.00 0.00 5.03
5213 6540 9.232082 TCAAATTTGTTGTTTTTGTATCTCGAG 57.768 29.630 17.47 5.93 33.24 4.04
5214 6541 9.015577 GTCAAATTTGTTGTTTTTGTATCTCGA 57.984 29.630 17.47 0.00 33.24 4.04
5215 6542 8.802856 TGTCAAATTTGTTGTTTTTGTATCTCG 58.197 29.630 17.47 0.00 33.24 4.04
5216 6543 9.900264 GTGTCAAATTTGTTGTTTTTGTATCTC 57.100 29.630 17.47 0.00 33.24 2.75
5217 6544 9.651913 AGTGTCAAATTTGTTGTTTTTGTATCT 57.348 25.926 17.47 0.00 33.24 1.98
5218 6545 9.687717 CAGTGTCAAATTTGTTGTTTTTGTATC 57.312 29.630 17.47 0.00 33.24 2.24
5219 6546 9.429359 TCAGTGTCAAATTTGTTGTTTTTGTAT 57.571 25.926 17.47 0.00 33.24 2.29
5220 6547 8.818141 TCAGTGTCAAATTTGTTGTTTTTGTA 57.182 26.923 17.47 0.00 33.24 2.41
5221 6548 7.721286 TCAGTGTCAAATTTGTTGTTTTTGT 57.279 28.000 17.47 0.00 33.24 2.83
5224 6551 9.651913 ACTATTCAGTGTCAAATTTGTTGTTTT 57.348 25.926 17.47 1.39 32.25 2.43
5226 6553 9.730420 GTACTATTCAGTGTCAAATTTGTTGTT 57.270 29.630 17.47 0.83 36.14 2.83
5227 6554 8.898761 TGTACTATTCAGTGTCAAATTTGTTGT 58.101 29.630 17.47 5.92 36.14 3.32
5228 6555 9.897744 ATGTACTATTCAGTGTCAAATTTGTTG 57.102 29.630 17.47 11.73 36.14 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.