Multiple sequence alignment - TraesCS3A01G459100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G459100 chr3A 100.000 4920 0 0 1 4920 695733103 695728184 0.000000e+00 9086
1 TraesCS3A01G459100 chr3A 90.997 311 17 6 1630 1937 695730784 695730482 4.580000e-110 409
2 TraesCS3A01G459100 chr3A 90.997 311 17 6 2320 2622 695731474 695731167 4.580000e-110 409
3 TraesCS3A01G459100 chr3A 83.173 208 20 7 4485 4680 168590815 168590611 5.060000e-40 176
4 TraesCS3A01G459100 chr3D 93.295 3848 148 42 683 4467 559187621 559183821 0.000000e+00 5576
5 TraesCS3A01G459100 chr3D 90.909 308 20 4 2321 2622 559186654 559186349 1.650000e-109 407
6 TraesCS3A01G459100 chr3D 90.354 311 19 6 1630 1937 559185975 559185673 9.920000e-107 398
7 TraesCS3A01G459100 chr3D 93.487 261 16 1 4661 4920 428973812 428974072 2.150000e-103 387
8 TraesCS3A01G459100 chr3D 83.500 200 12 8 4483 4663 40757587 40757390 3.050000e-37 167
9 TraesCS3A01G459100 chr3D 82.673 202 16 2 4481 4663 597311048 597310847 1.420000e-35 161
10 TraesCS3A01G459100 chr3D 81.959 194 14 2 4481 4655 114226697 114226888 1.430000e-30 145
11 TraesCS3A01G459100 chr3B 92.791 3801 182 37 700 4484 742173647 742169923 0.000000e+00 5417
12 TraesCS3A01G459100 chr3B 91.722 302 19 5 2327 2624 742172743 742172444 9.850000e-112 414
13 TraesCS3A01G459100 chr3B 88.997 309 23 6 1632 1937 742172076 742171776 6.010000e-99 372
14 TraesCS3A01G459100 chr3B 89.686 223 21 1 1 221 788948916 788948694 2.900000e-72 283
15 TraesCS3A01G459100 chr5A 90.795 478 39 4 139 612 698397651 698397175 6.950000e-178 634
16 TraesCS3A01G459100 chr5D 87.279 566 48 16 60 612 526127920 526127366 4.180000e-175 625
17 TraesCS3A01G459100 chr5D 88.142 506 50 7 109 612 466616860 466617357 1.180000e-165 593
18 TraesCS3A01G459100 chr5D 82.927 205 12 8 4480 4663 459931367 459931569 3.940000e-36 163
19 TraesCS3A01G459100 chr7B 87.125 567 52 14 58 612 97862682 97863239 1.500000e-174 623
20 TraesCS3A01G459100 chr7B 88.292 521 46 11 96 612 240864181 240864690 1.170000e-170 610
21 TraesCS3A01G459100 chr7B 87.689 528 48 12 114 634 687309751 687310268 2.530000e-167 599
22 TraesCS3A01G459100 chr7B 88.100 479 45 9 145 616 608176820 608176347 4.300000e-155 558
23 TraesCS3A01G459100 chr7B 82.803 157 25 2 4508 4662 527844655 527844499 6.640000e-29 139
24 TraesCS3A01G459100 chr2B 89.958 478 42 4 139 611 82763376 82762900 3.260000e-171 612
25 TraesCS3A01G459100 chr2B 88.492 504 46 9 115 612 433775284 433775781 2.530000e-167 599
26 TraesCS3A01G459100 chr2B 89.238 223 22 1 1 221 248154336 248154114 1.350000e-70 278
27 TraesCS3A01G459100 chr7D 87.429 525 48 12 96 612 11025832 11026346 5.490000e-164 588
28 TraesCS3A01G459100 chr7D 94.297 263 12 2 4661 4920 104360032 104360294 2.760000e-107 399
29 TraesCS3A01G459100 chr7D 93.103 261 16 2 4661 4920 568652382 568652641 9.990000e-102 381
30 TraesCS3A01G459100 chr5B 93.916 263 12 4 4661 4920 509680079 509679818 1.280000e-105 394
31 TraesCS3A01G459100 chr2A 93.870 261 14 2 4661 4920 659634124 659633865 4.620000e-105 392
32 TraesCS3A01G459100 chr2A 89.238 223 22 1 1 221 35378715 35378937 1.350000e-70 278
33 TraesCS3A01G459100 chr2A 89.238 223 22 1 1 221 160841848 160841626 1.350000e-70 278
34 TraesCS3A01G459100 chr2A 88.789 223 23 1 1 221 1632935 1632713 6.280000e-69 272
35 TraesCS3A01G459100 chr2A 83.838 198 15 8 4483 4663 712068846 712068649 6.550000e-39 172
36 TraesCS3A01G459100 chr4A 93.103 261 17 1 4661 4920 515785320 515785060 9.990000e-102 381
37 TraesCS3A01G459100 chr4A 87.500 144 14 3 475 615 690915410 690915552 3.940000e-36 163
38 TraesCS3A01G459100 chr6D 92.748 262 17 2 4661 4920 411996368 411996107 1.290000e-100 377
39 TraesCS3A01G459100 chr6D 82.353 204 17 1 4483 4667 300294960 300295163 5.100000e-35 159
40 TraesCS3A01G459100 chr6D 96.591 88 3 0 4569 4656 400779952 400779865 3.970000e-31 147
41 TraesCS3A01G459100 chr4D 92.720 261 18 1 4661 4920 32246515 32246775 4.650000e-100 375
42 TraesCS3A01G459100 chr4D 82.051 195 14 3 4483 4658 486789021 486789213 3.970000e-31 147
43 TraesCS3A01G459100 chr4D 92.135 89 5 1 4483 4571 386494026 386493940 1.860000e-24 124
44 TraesCS3A01G459100 chr2D 92.720 261 18 1 4661 4920 590329451 590329191 4.650000e-100 375
45 TraesCS3A01G459100 chr2D 84.500 200 11 5 4483 4663 8419190 8418992 3.910000e-41 180
46 TraesCS3A01G459100 chr2D 84.974 193 7 3 4483 4656 370634998 370634809 5.060000e-40 176
47 TraesCS3A01G459100 chr2D 80.571 175 26 5 4481 4649 38635947 38636119 1.440000e-25 128
48 TraesCS3A01G459100 chr7A 83.377 385 39 11 1169 1539 374006925 374006552 2.840000e-87 333
49 TraesCS3A01G459100 chr7A 82.203 236 28 9 1974 2208 374006262 374006040 1.810000e-44 191
50 TraesCS3A01G459100 chr7A 90.984 122 10 1 729 850 374007326 374007206 3.940000e-36 163
51 TraesCS3A01G459100 chr7A 82.500 200 14 4 4483 4663 447324641 447324838 6.590000e-34 156
52 TraesCS3A01G459100 chr1D 81.373 204 17 10 4481 4663 7063749 7063546 3.970000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G459100 chr3A 695728184 695733103 4919 True 3301.333333 9086 93.998000 1 4920 3 chr3A.!!$R2 4919
1 TraesCS3A01G459100 chr3D 559183821 559187621 3800 True 2127.000000 5576 91.519333 683 4467 3 chr3D.!!$R3 3784
2 TraesCS3A01G459100 chr3B 742169923 742173647 3724 True 2067.666667 5417 91.170000 700 4484 3 chr3B.!!$R2 3784
3 TraesCS3A01G459100 chr5D 526127366 526127920 554 True 625.000000 625 87.279000 60 612 1 chr5D.!!$R1 552
4 TraesCS3A01G459100 chr7B 97862682 97863239 557 False 623.000000 623 87.125000 58 612 1 chr7B.!!$F1 554
5 TraesCS3A01G459100 chr7B 240864181 240864690 509 False 610.000000 610 88.292000 96 612 1 chr7B.!!$F2 516
6 TraesCS3A01G459100 chr7B 687309751 687310268 517 False 599.000000 599 87.689000 114 634 1 chr7B.!!$F3 520
7 TraesCS3A01G459100 chr7D 11025832 11026346 514 False 588.000000 588 87.429000 96 612 1 chr7D.!!$F1 516
8 TraesCS3A01G459100 chr7A 374006040 374007326 1286 True 229.000000 333 85.521333 729 2208 3 chr7A.!!$R1 1479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 102 2.417719 GTGTGCAACTAGTCCTTCTGG 58.582 52.381 0.00 0.00 38.04 3.86 F
1098 1203 0.415429 TCTTCCTTCTCTGGGAGCCT 59.585 55.000 0.00 0.00 32.69 4.58 F
2878 3084 0.683973 ATCGACTGGGATCCATCAGC 59.316 55.000 15.23 7.96 34.57 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 2222 1.066605 CTGCAAAAGCAACTGAGCACT 59.933 47.619 0.00 0.0 36.85 4.40 R
3025 3231 0.250901 TCTCCTTTGGAAGTGGCAGC 60.251 55.000 0.00 0.0 0.00 5.25 R
4490 4714 0.032815 TATATAGCGCGGCTGTTGCA 59.967 50.000 8.83 0.0 40.10 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.636768 GCAATTAGTGTCCTGCCAAC 57.363 50.000 0.00 0.00 0.00 3.77
21 22 3.343617 GCAATTAGTGTCCTGCCAACTA 58.656 45.455 0.00 0.00 0.00 2.24
22 23 3.756434 GCAATTAGTGTCCTGCCAACTAA 59.244 43.478 0.00 0.00 39.87 2.24
23 24 4.217550 GCAATTAGTGTCCTGCCAACTAAA 59.782 41.667 0.00 0.00 39.23 1.85
24 25 5.105756 GCAATTAGTGTCCTGCCAACTAAAT 60.106 40.000 0.00 0.00 39.23 1.40
26 27 7.201821 GCAATTAGTGTCCTGCCAACTAAATAT 60.202 37.037 0.00 0.00 39.23 1.28
28 29 4.781934 AGTGTCCTGCCAACTAAATATCC 58.218 43.478 0.00 0.00 0.00 2.59
30 31 5.103940 AGTGTCCTGCCAACTAAATATCCAT 60.104 40.000 0.00 0.00 0.00 3.41
32 33 6.942576 GTGTCCTGCCAACTAAATATCCATAT 59.057 38.462 0.00 0.00 0.00 1.78
33 34 6.942005 TGTCCTGCCAACTAAATATCCATATG 59.058 38.462 0.00 0.00 0.00 1.78
34 35 6.942576 GTCCTGCCAACTAAATATCCATATGT 59.057 38.462 1.24 0.00 0.00 2.29
35 36 6.942005 TCCTGCCAACTAAATATCCATATGTG 59.058 38.462 1.24 0.00 0.00 3.21
36 37 6.716628 CCTGCCAACTAAATATCCATATGTGT 59.283 38.462 1.24 0.00 0.00 3.72
37 38 7.308770 CCTGCCAACTAAATATCCATATGTGTG 60.309 40.741 1.24 0.00 0.00 3.82
38 39 6.016360 TGCCAACTAAATATCCATATGTGTGC 60.016 38.462 1.24 0.00 0.00 4.57
40 41 7.469870 GCCAACTAAATATCCATATGTGTGCAA 60.470 37.037 1.24 0.00 0.00 4.08
41 42 7.862372 CCAACTAAATATCCATATGTGTGCAAC 59.138 37.037 1.24 0.00 37.35 4.17
42 43 8.623903 CAACTAAATATCCATATGTGTGCAACT 58.376 33.333 1.24 0.00 38.04 3.16
43 44 9.845740 AACTAAATATCCATATGTGTGCAACTA 57.154 29.630 1.24 0.00 38.04 2.24
44 45 9.494271 ACTAAATATCCATATGTGTGCAACTAG 57.506 33.333 1.24 0.00 38.04 2.57
45 46 9.710900 CTAAATATCCATATGTGTGCAACTAGA 57.289 33.333 0.00 0.00 38.04 2.43
46 47 7.969536 AATATCCATATGTGTGCAACTAGAC 57.030 36.000 0.00 0.00 38.04 2.59
47 48 5.620738 ATCCATATGTGTGCAACTAGACT 57.379 39.130 0.00 0.00 38.04 3.24
48 49 6.731292 ATCCATATGTGTGCAACTAGACTA 57.269 37.500 0.00 0.00 38.04 2.59
49 50 6.538945 TCCATATGTGTGCAACTAGACTAA 57.461 37.500 0.00 0.00 38.04 2.24
50 51 6.941857 TCCATATGTGTGCAACTAGACTAAA 58.058 36.000 0.00 0.00 38.04 1.85
51 52 7.564793 TCCATATGTGTGCAACTAGACTAAAT 58.435 34.615 0.00 0.00 38.04 1.40
52 53 8.046708 TCCATATGTGTGCAACTAGACTAAATT 58.953 33.333 0.00 0.00 38.04 1.82
53 54 9.325198 CCATATGTGTGCAACTAGACTAAATTA 57.675 33.333 0.00 0.00 38.04 1.40
55 56 9.884636 ATATGTGTGCAACTAGACTAAATTACA 57.115 29.630 0.00 0.00 38.04 2.41
56 57 8.615878 ATGTGTGCAACTAGACTAAATTACAA 57.384 30.769 0.00 0.00 38.04 2.41
57 58 8.083462 TGTGTGCAACTAGACTAAATTACAAG 57.917 34.615 0.00 0.00 38.04 3.16
58 59 7.713507 TGTGTGCAACTAGACTAAATTACAAGT 59.286 33.333 0.00 0.00 38.04 3.16
94 102 2.417719 GTGTGCAACTAGTCCTTCTGG 58.582 52.381 0.00 0.00 38.04 3.86
140 187 7.169982 GTGCAACTAGACTACATTATAAGCCAG 59.830 40.741 0.00 0.00 0.00 4.85
141 188 6.146347 GCAACTAGACTACATTATAAGCCAGC 59.854 42.308 0.00 0.00 0.00 4.85
142 189 7.437748 CAACTAGACTACATTATAAGCCAGCT 58.562 38.462 0.00 0.00 0.00 4.24
143 190 6.987386 ACTAGACTACATTATAAGCCAGCTG 58.013 40.000 6.78 6.78 0.00 4.24
144 191 6.778069 ACTAGACTACATTATAAGCCAGCTGA 59.222 38.462 17.39 0.00 0.00 4.26
145 192 6.485830 AGACTACATTATAAGCCAGCTGAA 57.514 37.500 17.39 0.00 0.00 3.02
146 193 6.284459 AGACTACATTATAAGCCAGCTGAAC 58.716 40.000 17.39 6.97 0.00 3.18
147 194 5.989477 ACTACATTATAAGCCAGCTGAACA 58.011 37.500 17.39 0.00 0.00 3.18
148 195 6.051717 ACTACATTATAAGCCAGCTGAACAG 58.948 40.000 17.39 0.00 0.00 3.16
172 219 6.486253 CAATGTGTGCAACTAGACTACATT 57.514 37.500 0.00 0.00 37.66 2.71
173 220 7.595311 CAATGTGTGCAACTAGACTACATTA 57.405 36.000 0.00 0.00 36.03 1.90
174 221 8.201554 CAATGTGTGCAACTAGACTACATTAT 57.798 34.615 0.00 0.00 36.03 1.28
175 222 9.313118 CAATGTGTGCAACTAGACTACATTATA 57.687 33.333 0.00 0.00 36.03 0.98
176 223 9.884636 AATGTGTGCAACTAGACTACATTATAA 57.115 29.630 0.00 0.00 36.03 0.98
177 224 8.926715 TGTGTGCAACTAGACTACATTATAAG 57.073 34.615 0.00 0.00 38.04 1.73
178 225 7.491372 TGTGTGCAACTAGACTACATTATAAGC 59.509 37.037 0.00 0.00 38.04 3.09
179 226 6.984474 TGTGCAACTAGACTACATTATAAGCC 59.016 38.462 0.00 0.00 38.04 4.35
180 227 7.147724 TGTGCAACTAGACTACATTATAAGCCT 60.148 37.037 0.00 0.00 38.04 4.58
200 247 7.792374 AGCCTACTAAATATCAATGTGTGTG 57.208 36.000 0.00 0.00 0.00 3.82
261 310 7.811117 AAGTTGCACCATTGTAGTACTAAAA 57.189 32.000 7.97 7.97 0.00 1.52
308 357 7.403312 TGCACCATATAGCAACAAAATTAGT 57.597 32.000 0.00 0.00 37.90 2.24
399 454 3.250040 CGGTGAAAACGGAACTGAATTCT 59.750 43.478 7.05 0.00 37.48 2.40
461 517 3.560902 TGCCGAAATAAAAATGCGTGA 57.439 38.095 0.00 0.00 0.00 4.35
464 520 4.926238 TGCCGAAATAAAAATGCGTGAATT 59.074 33.333 0.00 0.00 0.00 2.17
566 626 3.513768 ATGTGTGTGGCAGACGCGA 62.514 57.895 21.25 12.11 39.92 5.87
567 627 2.738521 GTGTGTGGCAGACGCGAT 60.739 61.111 15.93 0.00 39.92 4.58
612 672 4.778904 CGCGACCACTTTTTAGATTTTGA 58.221 39.130 0.00 0.00 0.00 2.69
613 673 5.209240 CGCGACCACTTTTTAGATTTTGAA 58.791 37.500 0.00 0.00 0.00 2.69
614 674 5.683743 CGCGACCACTTTTTAGATTTTGAAA 59.316 36.000 0.00 0.00 0.00 2.69
615 675 6.344702 CGCGACCACTTTTTAGATTTTGAAAC 60.345 38.462 0.00 0.00 0.00 2.78
616 676 6.344702 GCGACCACTTTTTAGATTTTGAAACG 60.345 38.462 0.00 0.00 0.00 3.60
617 677 6.141685 CGACCACTTTTTAGATTTTGAAACGG 59.858 38.462 0.00 0.00 0.00 4.44
618 678 7.102847 ACCACTTTTTAGATTTTGAAACGGA 57.897 32.000 0.00 0.00 0.00 4.69
619 679 7.722363 ACCACTTTTTAGATTTTGAAACGGAT 58.278 30.769 0.00 0.00 0.00 4.18
620 680 8.201464 ACCACTTTTTAGATTTTGAAACGGATT 58.799 29.630 0.00 0.00 0.00 3.01
621 681 9.685828 CCACTTTTTAGATTTTGAAACGGATTA 57.314 29.630 0.00 0.00 0.00 1.75
851 921 2.671070 CGGTGGAGCAGGTGGATT 59.329 61.111 0.00 0.00 0.00 3.01
1088 1193 3.041508 GTGGTACGCTTTCTTCCTTCT 57.958 47.619 0.00 0.00 35.02 2.85
1097 1202 1.280457 TTCTTCCTTCTCTGGGAGCC 58.720 55.000 0.00 0.00 32.69 4.70
1098 1203 0.415429 TCTTCCTTCTCTGGGAGCCT 59.585 55.000 0.00 0.00 32.69 4.58
1127 1257 3.181482 TGGTCTCTGCTCTGATTTCGATC 60.181 47.826 0.00 0.00 0.00 3.69
1133 1263 3.126073 TGCTCTGATTTCGATCCGATTG 58.874 45.455 0.00 0.00 35.23 2.67
1340 1481 3.219198 GGGCTTGCTTATGGGGCG 61.219 66.667 0.00 0.00 0.00 6.13
1380 1533 2.439245 GACTTTGGGGGTGGGGAC 59.561 66.667 0.00 0.00 0.00 4.46
1403 1556 7.255070 GGACTGATGATTAATTGCTTCTTCTCC 60.255 40.741 0.00 0.00 0.00 3.71
1506 1664 2.114670 CGTTCGCCTGCCCATCATT 61.115 57.895 0.00 0.00 0.00 2.57
1609 1793 9.388506 CTGTGTCAGATCTTTATTTTCCTGTAT 57.611 33.333 0.00 0.00 32.44 2.29
1610 1794 9.166173 TGTGTCAGATCTTTATTTTCCTGTATG 57.834 33.333 0.00 0.00 0.00 2.39
1611 1795 9.167311 GTGTCAGATCTTTATTTTCCTGTATGT 57.833 33.333 0.00 0.00 0.00 2.29
1626 1810 6.296803 TCCTGTATGTATAGTGAGACGATGT 58.703 40.000 0.00 0.00 0.00 3.06
1628 1812 7.387122 TCCTGTATGTATAGTGAGACGATGTAC 59.613 40.741 0.00 0.00 0.00 2.90
1635 1819 6.847956 ATAGTGAGACGATGTACTGTAGTC 57.152 41.667 0.00 0.00 0.00 2.59
1636 1820 4.576879 AGTGAGACGATGTACTGTAGTCA 58.423 43.478 12.05 5.13 34.56 3.41
1663 1858 5.398126 GGGTCTCCATCTGTCTAGACTAGAA 60.398 48.000 23.01 6.94 38.69 2.10
1664 1859 5.763204 GGTCTCCATCTGTCTAGACTAGAAG 59.237 48.000 23.01 18.18 38.69 2.85
1723 1918 8.632679 TCCTTCATATGTCCTTAATCAATTTGC 58.367 33.333 1.90 0.00 0.00 3.68
1775 1970 4.250464 TGTTCTACGGTTTTCATAGGCTG 58.750 43.478 0.00 0.00 0.00 4.85
1777 1972 3.101437 TCTACGGTTTTCATAGGCTGGA 58.899 45.455 0.00 0.00 0.00 3.86
2013 2218 1.880027 GCCCAAGTCTGTTGTTAGTGG 59.120 52.381 0.00 0.00 0.00 4.00
2014 2219 1.880027 CCCAAGTCTGTTGTTAGTGGC 59.120 52.381 0.00 0.00 0.00 5.01
2015 2220 2.487265 CCCAAGTCTGTTGTTAGTGGCT 60.487 50.000 0.00 0.00 0.00 4.75
2016 2221 3.214328 CCAAGTCTGTTGTTAGTGGCTT 58.786 45.455 0.00 0.00 0.00 4.35
2017 2222 4.385825 CCAAGTCTGTTGTTAGTGGCTTA 58.614 43.478 0.00 0.00 0.00 3.09
2018 2223 4.452455 CCAAGTCTGTTGTTAGTGGCTTAG 59.548 45.833 0.00 0.00 0.00 2.18
2019 2224 4.957684 AGTCTGTTGTTAGTGGCTTAGT 57.042 40.909 0.00 0.00 0.00 2.24
2020 2225 4.632153 AGTCTGTTGTTAGTGGCTTAGTG 58.368 43.478 0.00 0.00 0.00 2.74
2068 2273 2.691526 GGATGTGGCATGTGATGAATGT 59.308 45.455 0.00 0.00 0.00 2.71
2093 2298 9.638239 GTCATTGCTATTCAATTTAAAACCTGA 57.362 29.630 0.00 0.00 42.48 3.86
2246 2452 1.090052 GTGGCCCGTAAGCATCAGAC 61.090 60.000 0.00 0.00 0.00 3.51
2373 2579 4.351054 CCCTGGGTGGAGGCACAC 62.351 72.222 3.97 4.03 40.60 3.82
2390 2596 7.068716 GGAGGCACACAAATAAATTATCCTTCT 59.931 37.037 0.00 0.00 0.00 2.85
2440 2646 4.532126 AGTGTATCCTCTCAAATGTGGTGA 59.468 41.667 0.00 0.00 0.00 4.02
2452 2658 9.295825 TCTCAAATGTGGTGATTATACAGTTTT 57.704 29.630 0.00 0.00 31.23 2.43
2455 2661 9.128107 CAAATGTGGTGATTATACAGTTTTCAC 57.872 33.333 0.00 0.00 36.76 3.18
2497 2703 6.265876 TGGTTGTCCTAACCTGTTAAATTTCC 59.734 38.462 9.91 0.00 40.88 3.13
2613 2819 2.409378 GCAAGTCCAAATGATGTTTGCG 59.591 45.455 0.00 0.00 32.82 4.85
2631 2837 6.431543 TGTTTGCGACTAAATATGGGAAAGAA 59.568 34.615 0.00 0.00 0.00 2.52
2636 2842 6.417930 GCGACTAAATATGGGAAAGAATTTGC 59.582 38.462 0.00 0.00 46.47 3.68
2679 2885 1.077716 GGATTCTGGGGTCAACCGG 60.078 63.158 0.00 0.00 41.60 5.28
2707 2913 6.265196 GGTCATATGCCAACTTCCATGATAAA 59.735 38.462 10.27 0.00 0.00 1.40
2709 2915 8.362639 GTCATATGCCAACTTCCATGATAAAAT 58.637 33.333 0.00 0.00 0.00 1.82
2712 2918 7.658525 ATGCCAACTTCCATGATAAAATGTA 57.341 32.000 0.00 0.00 0.00 2.29
2713 2919 6.862209 TGCCAACTTCCATGATAAAATGTAC 58.138 36.000 0.00 0.00 0.00 2.90
2752 2958 9.851686 TTACTTAACCATTAGAATGATGCTGAT 57.148 29.630 3.76 0.00 38.70 2.90
2878 3084 0.683973 ATCGACTGGGATCCATCAGC 59.316 55.000 15.23 7.96 34.57 4.26
2888 3094 2.200067 GATCCATCAGCAACAGAGACG 58.800 52.381 0.00 0.00 0.00 4.18
2943 3149 8.832521 TGGTTAGTGTTTACATACAAGAAACTG 58.167 33.333 0.00 0.00 34.77 3.16
2950 3156 4.568152 ACATACAAGAAACTGTGGTTGC 57.432 40.909 0.00 0.00 35.63 4.17
2954 3160 2.097466 ACAAGAAACTGTGGTTGCTTCG 59.903 45.455 0.00 0.35 45.44 3.79
2976 3182 6.898041 TCGTTATTTTGAATCTCACCTTGTG 58.102 36.000 0.00 0.00 34.45 3.33
2984 3190 4.756642 TGAATCTCACCTTGTGACATGTTC 59.243 41.667 0.00 0.00 37.67 3.18
2992 3198 3.004734 CCTTGTGACATGTTCCCTTTCAC 59.995 47.826 0.00 2.00 37.65 3.18
3025 3231 3.107642 ACCTACTTCAGTGGTTCAACG 57.892 47.619 0.00 0.00 0.00 4.10
3051 3257 2.943033 CACTTCCAAAGGAGAAACACGT 59.057 45.455 0.00 0.00 31.21 4.49
3069 3275 1.160137 GTGGAACCAGTAGCTGCAAG 58.840 55.000 4.12 0.00 0.00 4.01
3074 3280 1.302752 CCAGTAGCTGCAAGTGCCA 60.303 57.895 4.12 0.00 41.18 4.92
3098 3304 4.503910 TGACGAACCTGGTGAAGATTATG 58.496 43.478 0.00 0.00 0.00 1.90
3218 3424 0.461870 TGTGCAAAGCTCACAGTCGT 60.462 50.000 2.75 0.00 39.29 4.34
3349 3555 0.332632 AGCCAAGGATGCCAGCTTTA 59.667 50.000 0.00 0.00 0.00 1.85
3403 3609 0.040204 CTCCCCCACCATTTGCTTCT 59.960 55.000 0.00 0.00 0.00 2.85
3404 3610 0.251742 TCCCCCACCATTTGCTTCTG 60.252 55.000 0.00 0.00 0.00 3.02
3405 3611 1.593265 CCCCACCATTTGCTTCTGC 59.407 57.895 0.00 0.00 40.20 4.26
3488 3694 3.505293 AGAGCAAGAATTCTTCACAAGGC 59.495 43.478 17.91 16.10 33.11 4.35
3529 3735 2.703007 TCCCCAAACACCCAAAGATTTG 59.297 45.455 0.00 0.00 37.90 2.32
3544 3750 7.086376 CCAAAGATTTGAACATGTTCTCGAAT 58.914 34.615 32.57 27.20 40.55 3.34
3571 3777 1.936547 GAACAGGTGCATTCGATCTCC 59.063 52.381 0.00 0.00 0.00 3.71
3607 3813 5.951747 CGGGGAAAATATTGATATGGATGGT 59.048 40.000 0.00 0.00 0.00 3.55
3744 3950 4.507710 GTTTATGAGAGCCACAGTGATGA 58.492 43.478 0.62 0.00 0.00 2.92
3775 3981 6.814506 AAGGAAAGTCATCATCAAACTGAG 57.185 37.500 0.00 0.00 0.00 3.35
3776 3982 5.251764 AGGAAAGTCATCATCAAACTGAGG 58.748 41.667 0.00 0.00 0.00 3.86
3777 3983 5.006386 GGAAAGTCATCATCAAACTGAGGT 58.994 41.667 0.00 0.00 29.15 3.85
3778 3984 5.106396 GGAAAGTCATCATCAAACTGAGGTG 60.106 44.000 0.00 0.00 29.15 4.00
3779 3985 4.897509 AGTCATCATCAAACTGAGGTGA 57.102 40.909 0.00 0.00 29.15 4.02
3780 3986 4.573900 AGTCATCATCAAACTGAGGTGAC 58.426 43.478 12.13 12.13 38.35 3.67
3953 4160 2.742053 GCAAATTAGTCGTTGAGCCTGA 59.258 45.455 0.00 0.00 0.00 3.86
3967 4174 3.760151 TGAGCCTGATTTGAAGTCATTGG 59.240 43.478 0.00 0.00 0.00 3.16
4083 4290 0.893270 TGCAGCGGTTTTACCAGCAT 60.893 50.000 12.64 0.18 38.47 3.79
4245 4452 6.325804 TGATTATCATGATCTGAGTCTGGTGT 59.674 38.462 12.53 0.00 37.28 4.16
4301 4509 5.216566 TGCAATTTTAGTCATACTCGTGC 57.783 39.130 0.00 0.00 0.00 5.34
4410 4632 4.453480 AGGGAACTGAAAATGGTTCAGA 57.547 40.909 19.99 0.00 46.57 3.27
4412 4634 4.768968 AGGGAACTGAAAATGGTTCAGATG 59.231 41.667 19.99 0.00 46.57 2.90
4436 4659 4.556697 TCTAATATCTCACCTTGGCTGGA 58.443 43.478 4.24 0.00 0.00 3.86
4486 4710 6.819397 ATAAACAGGGTTTCTTGTTAGAGC 57.181 37.500 0.00 0.00 0.00 4.09
4487 4711 3.857157 ACAGGGTTTCTTGTTAGAGCA 57.143 42.857 0.00 0.00 0.00 4.26
4488 4712 4.373156 ACAGGGTTTCTTGTTAGAGCAT 57.627 40.909 0.00 0.00 0.00 3.79
4489 4713 4.327680 ACAGGGTTTCTTGTTAGAGCATC 58.672 43.478 0.00 0.00 0.00 3.91
4500 4724 2.789917 GAGCATCTGCAACAGCCG 59.210 61.111 4.79 0.00 45.16 5.52
4501 4725 3.392595 GAGCATCTGCAACAGCCGC 62.393 63.158 4.79 0.00 45.16 6.53
4502 4726 4.824166 GCATCTGCAACAGCCGCG 62.824 66.667 0.00 0.00 41.59 6.46
4503 4727 4.824166 CATCTGCAACAGCCGCGC 62.824 66.667 0.00 0.00 0.00 6.86
4505 4729 3.664025 ATCTGCAACAGCCGCGCTA 62.664 57.895 5.56 0.00 36.40 4.26
4506 4730 2.930385 ATCTGCAACAGCCGCGCTAT 62.930 55.000 5.56 0.00 36.40 2.97
4507 4731 1.882625 CTGCAACAGCCGCGCTATA 60.883 57.895 5.56 0.00 36.40 1.31
4508 4732 1.224069 CTGCAACAGCCGCGCTATAT 61.224 55.000 5.56 0.00 36.40 0.86
4509 4733 0.032815 TGCAACAGCCGCGCTATATA 59.967 50.000 5.56 0.00 36.40 0.86
4510 4734 1.144969 GCAACAGCCGCGCTATATAA 58.855 50.000 5.56 0.00 36.40 0.98
4511 4735 1.126846 GCAACAGCCGCGCTATATAAG 59.873 52.381 5.56 0.00 36.40 1.73
4530 4754 3.639222 CGCCGCGCTGAAATATTAG 57.361 52.632 5.56 0.00 0.00 1.73
4531 4755 0.859232 CGCCGCGCTGAAATATTAGT 59.141 50.000 5.56 0.00 0.00 2.24
4532 4756 1.397190 CGCCGCGCTGAAATATTAGTG 60.397 52.381 5.56 0.00 0.00 2.74
4533 4757 1.597663 GCCGCGCTGAAATATTAGTGT 59.402 47.619 5.56 0.00 0.00 3.55
4534 4758 2.031683 GCCGCGCTGAAATATTAGTGTT 59.968 45.455 5.56 0.00 0.00 3.32
4535 4759 3.486875 GCCGCGCTGAAATATTAGTGTTT 60.487 43.478 5.56 0.00 0.00 2.83
4536 4760 4.658071 CCGCGCTGAAATATTAGTGTTTT 58.342 39.130 5.56 0.00 0.00 2.43
4537 4761 5.092781 CCGCGCTGAAATATTAGTGTTTTT 58.907 37.500 5.56 0.00 0.00 1.94
4552 4776 3.980136 TTTTTATGTGCGCGCTACC 57.020 47.368 33.29 19.82 0.00 3.18
4553 4777 0.095589 TTTTTATGTGCGCGCTACCG 59.904 50.000 33.29 0.00 37.57 4.02
4585 4809 2.430921 GCGCGCGGCATATCTAGT 60.431 61.111 33.06 0.00 42.87 2.57
4586 4810 2.022129 GCGCGCGGCATATCTAGTT 61.022 57.895 33.06 0.00 42.87 2.24
4587 4811 1.945776 GCGCGCGGCATATCTAGTTC 61.946 60.000 33.06 5.61 42.87 3.01
4588 4812 0.663269 CGCGCGGCATATCTAGTTCA 60.663 55.000 24.84 0.00 0.00 3.18
4589 4813 1.063806 GCGCGGCATATCTAGTTCAG 58.936 55.000 8.83 0.00 0.00 3.02
4590 4814 1.603172 GCGCGGCATATCTAGTTCAGT 60.603 52.381 8.83 0.00 0.00 3.41
4591 4815 2.054363 CGCGGCATATCTAGTTCAGTG 58.946 52.381 0.00 0.00 0.00 3.66
4592 4816 1.795286 GCGGCATATCTAGTTCAGTGC 59.205 52.381 0.00 0.00 0.00 4.40
4593 4817 2.054363 CGGCATATCTAGTTCAGTGCG 58.946 52.381 0.00 0.00 33.62 5.34
4594 4818 1.795286 GGCATATCTAGTTCAGTGCGC 59.205 52.381 0.00 0.00 33.62 6.09
4595 4819 1.453524 GCATATCTAGTTCAGTGCGCG 59.546 52.381 0.00 0.00 0.00 6.86
4596 4820 2.054363 CATATCTAGTTCAGTGCGCGG 58.946 52.381 8.83 0.00 0.00 6.46
4597 4821 0.384309 TATCTAGTTCAGTGCGCGGG 59.616 55.000 8.83 0.00 0.00 6.13
4598 4822 2.907897 ATCTAGTTCAGTGCGCGGGC 62.908 60.000 18.81 18.81 40.52 6.13
4599 4823 4.752879 TAGTTCAGTGCGCGGGCC 62.753 66.667 22.70 13.09 38.85 5.80
4629 4853 2.648724 CGCGCCGCTTATTTGCTG 60.649 61.111 7.78 0.00 0.00 4.41
4630 4854 2.951227 GCGCCGCTTATTTGCTGC 60.951 61.111 0.00 0.00 39.28 5.25
4634 4858 2.278142 CGCTTATTTGCTGCGCCC 60.278 61.111 4.18 0.00 43.08 6.13
4635 4859 2.278142 GCTTATTTGCTGCGCCCG 60.278 61.111 4.18 0.00 0.00 6.13
4636 4860 2.278142 CTTATTTGCTGCGCCCGC 60.278 61.111 4.18 8.60 42.35 6.13
4637 4861 2.749839 TTATTTGCTGCGCCCGCT 60.750 55.556 17.83 2.93 42.51 5.52
4638 4862 2.652893 CTTATTTGCTGCGCCCGCTC 62.653 60.000 17.83 6.41 42.51 5.03
4658 4882 2.738521 GCGCGCTGGACTCTCAAA 60.739 61.111 26.67 0.00 0.00 2.69
4659 4883 3.016474 GCGCGCTGGACTCTCAAAC 62.016 63.158 26.67 0.00 0.00 2.93
4660 4884 2.720758 CGCGCTGGACTCTCAAACG 61.721 63.158 5.56 0.00 0.00 3.60
4661 4885 3.016474 GCGCTGGACTCTCAAACGC 62.016 63.158 0.00 0.00 35.96 4.84
4662 4886 1.373497 CGCTGGACTCTCAAACGCT 60.373 57.895 0.00 0.00 0.00 5.07
4663 4887 0.946221 CGCTGGACTCTCAAACGCTT 60.946 55.000 0.00 0.00 0.00 4.68
4664 4888 0.793250 GCTGGACTCTCAAACGCTTC 59.207 55.000 0.00 0.00 0.00 3.86
4665 4889 1.433534 CTGGACTCTCAAACGCTTCC 58.566 55.000 0.00 0.00 0.00 3.46
4666 4890 1.001406 CTGGACTCTCAAACGCTTCCT 59.999 52.381 0.00 0.00 0.00 3.36
4667 4891 1.000955 TGGACTCTCAAACGCTTCCTC 59.999 52.381 0.00 0.00 0.00 3.71
4668 4892 1.673329 GGACTCTCAAACGCTTCCTCC 60.673 57.143 0.00 0.00 0.00 4.30
4669 4893 0.038159 ACTCTCAAACGCTTCCTCCG 60.038 55.000 0.00 0.00 0.00 4.63
4670 4894 0.038159 CTCTCAAACGCTTCCTCCGT 60.038 55.000 0.00 0.00 41.24 4.69
4671 4895 0.038526 TCTCAAACGCTTCCTCCGTC 60.039 55.000 0.00 0.00 38.06 4.79
4672 4896 0.038159 CTCAAACGCTTCCTCCGTCT 60.038 55.000 0.00 0.00 38.06 4.18
4673 4897 0.038526 TCAAACGCTTCCTCCGTCTC 60.039 55.000 0.00 0.00 38.06 3.36
4674 4898 1.014564 CAAACGCTTCCTCCGTCTCC 61.015 60.000 0.00 0.00 38.06 3.71
4675 4899 2.168666 AAACGCTTCCTCCGTCTCCC 62.169 60.000 0.00 0.00 38.06 4.30
4676 4900 2.756283 CGCTTCCTCCGTCTCCCT 60.756 66.667 0.00 0.00 0.00 4.20
4677 4901 2.776913 CGCTTCCTCCGTCTCCCTC 61.777 68.421 0.00 0.00 0.00 4.30
4678 4902 1.380650 GCTTCCTCCGTCTCCCTCT 60.381 63.158 0.00 0.00 0.00 3.69
4679 4903 0.106619 GCTTCCTCCGTCTCCCTCTA 60.107 60.000 0.00 0.00 0.00 2.43
4680 4904 1.975660 CTTCCTCCGTCTCCCTCTAG 58.024 60.000 0.00 0.00 0.00 2.43
4681 4905 1.213430 CTTCCTCCGTCTCCCTCTAGT 59.787 57.143 0.00 0.00 0.00 2.57
4682 4906 0.838608 TCCTCCGTCTCCCTCTAGTC 59.161 60.000 0.00 0.00 0.00 2.59
4683 4907 0.547075 CCTCCGTCTCCCTCTAGTCA 59.453 60.000 0.00 0.00 0.00 3.41
4684 4908 1.670791 CTCCGTCTCCCTCTAGTCAC 58.329 60.000 0.00 0.00 0.00 3.67
4685 4909 0.255318 TCCGTCTCCCTCTAGTCACC 59.745 60.000 0.00 0.00 0.00 4.02
4686 4910 1.096386 CCGTCTCCCTCTAGTCACCG 61.096 65.000 0.00 0.00 0.00 4.94
4687 4911 1.716826 CGTCTCCCTCTAGTCACCGC 61.717 65.000 0.00 0.00 0.00 5.68
4688 4912 1.076923 TCTCCCTCTAGTCACCGCC 60.077 63.158 0.00 0.00 0.00 6.13
4689 4913 2.439701 TCCCTCTAGTCACCGCCG 60.440 66.667 0.00 0.00 0.00 6.46
4690 4914 4.208686 CCCTCTAGTCACCGCCGC 62.209 72.222 0.00 0.00 0.00 6.53
4691 4915 4.208686 CCTCTAGTCACCGCCGCC 62.209 72.222 0.00 0.00 0.00 6.13
4692 4916 4.208686 CTCTAGTCACCGCCGCCC 62.209 72.222 0.00 0.00 0.00 6.13
4719 4943 3.371063 GGCAGTCCTCCGACGACA 61.371 66.667 0.00 0.00 44.28 4.35
4720 4944 2.179517 GCAGTCCTCCGACGACAG 59.820 66.667 0.00 0.00 44.28 3.51
4721 4945 2.179517 CAGTCCTCCGACGACAGC 59.820 66.667 0.00 0.00 44.28 4.40
4722 4946 3.432588 AGTCCTCCGACGACAGCG 61.433 66.667 0.00 0.00 44.28 5.18
4768 4992 3.907927 CGCAAGGTGTTCGACAAAA 57.092 47.368 0.00 0.00 0.00 2.44
4769 4993 1.462791 CGCAAGGTGTTCGACAAAAC 58.537 50.000 0.00 0.00 0.00 2.43
4770 4994 1.462791 GCAAGGTGTTCGACAAAACG 58.537 50.000 0.00 0.00 31.58 3.60
4771 4995 1.462791 CAAGGTGTTCGACAAAACGC 58.537 50.000 0.00 0.00 38.60 4.84
4773 4997 4.601315 GTGTTCGACAAAACGCCC 57.399 55.556 0.00 0.00 34.35 6.13
4774 4998 1.368374 GTGTTCGACAAAACGCCCG 60.368 57.895 0.00 0.00 34.35 6.13
4775 4999 2.426261 GTTCGACAAAACGCCCGC 60.426 61.111 0.00 0.00 0.00 6.13
4776 5000 2.895865 TTCGACAAAACGCCCGCA 60.896 55.556 0.00 0.00 0.00 5.69
4777 5001 2.470362 TTCGACAAAACGCCCGCAA 61.470 52.632 0.00 0.00 0.00 4.85
4778 5002 2.381665 TTCGACAAAACGCCCGCAAG 62.382 55.000 0.00 0.00 0.00 4.01
4796 5020 5.567138 GCAAGGTATGTATTGCTCAAACT 57.433 39.130 2.80 0.00 46.49 2.66
4797 5021 5.954335 GCAAGGTATGTATTGCTCAAACTT 58.046 37.500 2.80 0.00 46.49 2.66
4798 5022 6.030228 GCAAGGTATGTATTGCTCAAACTTC 58.970 40.000 2.80 0.00 46.49 3.01
4799 5023 6.349280 GCAAGGTATGTATTGCTCAAACTTCA 60.349 38.462 2.80 0.00 46.49 3.02
4800 5024 6.743575 AGGTATGTATTGCTCAAACTTCAC 57.256 37.500 0.00 0.00 0.00 3.18
4801 5025 6.237901 AGGTATGTATTGCTCAAACTTCACA 58.762 36.000 0.00 0.00 0.00 3.58
4802 5026 6.372659 AGGTATGTATTGCTCAAACTTCACAG 59.627 38.462 0.00 0.00 0.00 3.66
4803 5027 6.149474 GGTATGTATTGCTCAAACTTCACAGT 59.851 38.462 0.00 0.00 33.11 3.55
4804 5028 6.639632 ATGTATTGCTCAAACTTCACAGTT 57.360 33.333 0.00 0.00 45.89 3.16
4819 5043 8.647143 ACTTCACAGTTTTTACATGAATTTGG 57.353 30.769 0.00 0.00 0.00 3.28
4820 5044 8.257306 ACTTCACAGTTTTTACATGAATTTGGT 58.743 29.630 0.00 0.00 0.00 3.67
4821 5045 8.417780 TTCACAGTTTTTACATGAATTTGGTG 57.582 30.769 0.00 0.00 0.00 4.17
4822 5046 6.478344 TCACAGTTTTTACATGAATTTGGTGC 59.522 34.615 0.00 0.00 0.00 5.01
4823 5047 6.257411 CACAGTTTTTACATGAATTTGGTGCA 59.743 34.615 0.00 0.00 0.00 4.57
4824 5048 6.991531 ACAGTTTTTACATGAATTTGGTGCAT 59.008 30.769 0.00 0.00 0.00 3.96
4825 5049 7.041916 ACAGTTTTTACATGAATTTGGTGCATG 60.042 33.333 0.00 0.00 43.70 4.06
4833 5057 7.780008 CATGAATTTGGTGCATGTTGATTAT 57.220 32.000 0.00 0.00 35.78 1.28
4834 5058 8.874744 CATGAATTTGGTGCATGTTGATTATA 57.125 30.769 0.00 0.00 35.78 0.98
4835 5059 8.974408 CATGAATTTGGTGCATGTTGATTATAG 58.026 33.333 0.00 0.00 35.78 1.31
4836 5060 8.065473 TGAATTTGGTGCATGTTGATTATAGT 57.935 30.769 0.00 0.00 0.00 2.12
4837 5061 8.530311 TGAATTTGGTGCATGTTGATTATAGTT 58.470 29.630 0.00 0.00 0.00 2.24
4838 5062 9.369904 GAATTTGGTGCATGTTGATTATAGTTT 57.630 29.630 0.00 0.00 0.00 2.66
4839 5063 9.723601 AATTTGGTGCATGTTGATTATAGTTTT 57.276 25.926 0.00 0.00 0.00 2.43
4840 5064 9.723601 ATTTGGTGCATGTTGATTATAGTTTTT 57.276 25.926 0.00 0.00 0.00 1.94
4878 5102 8.948631 ATATTGAACATTGTAGATGAGTTCGT 57.051 30.769 0.00 0.00 40.95 3.85
4879 5103 6.706055 TTGAACATTGTAGATGAGTTCGTC 57.294 37.500 0.00 0.00 40.95 4.20
4880 5104 5.778862 TGAACATTGTAGATGAGTTCGTCA 58.221 37.500 4.32 0.00 40.95 4.35
4882 5106 7.543756 TGAACATTGTAGATGAGTTCGTCATA 58.456 34.615 4.32 0.00 46.64 2.15
4883 5107 8.197439 TGAACATTGTAGATGAGTTCGTCATAT 58.803 33.333 4.32 0.00 46.64 1.78
4884 5108 9.678941 GAACATTGTAGATGAGTTCGTCATATA 57.321 33.333 4.32 0.00 46.64 0.86
4893 5117 8.765219 AGATGAGTTCGTCATATAATTTTTCCG 58.235 33.333 4.32 0.00 46.64 4.30
4894 5118 8.657074 ATGAGTTCGTCATATAATTTTTCCGA 57.343 30.769 0.00 0.00 44.69 4.55
4895 5119 8.481974 TGAGTTCGTCATATAATTTTTCCGAA 57.518 30.769 0.00 0.00 0.00 4.30
4896 5120 8.600625 TGAGTTCGTCATATAATTTTTCCGAAG 58.399 33.333 0.00 0.00 34.25 3.79
4897 5121 8.712285 AGTTCGTCATATAATTTTTCCGAAGA 57.288 30.769 0.00 0.00 34.25 2.87
4898 5122 9.158233 AGTTCGTCATATAATTTTTCCGAAGAA 57.842 29.630 0.00 0.00 34.25 2.52
4899 5123 9.422196 GTTCGTCATATAATTTTTCCGAAGAAG 57.578 33.333 0.00 0.00 34.25 2.85
4900 5124 8.936070 TCGTCATATAATTTTTCCGAAGAAGA 57.064 30.769 0.00 0.00 32.35 2.87
4901 5125 9.373603 TCGTCATATAATTTTTCCGAAGAAGAA 57.626 29.630 0.00 0.00 32.35 2.52
4911 5135 9.807649 ATTTTTCCGAAGAAGAATTTGATATGG 57.192 29.630 0.00 0.00 34.11 2.74
4912 5136 8.574251 TTTTCCGAAGAAGAATTTGATATGGA 57.426 30.769 0.00 0.00 32.35 3.41
4913 5137 8.574251 TTTCCGAAGAAGAATTTGATATGGAA 57.426 30.769 0.00 0.00 32.35 3.53
4914 5138 7.792374 TCCGAAGAAGAATTTGATATGGAAG 57.208 36.000 0.00 0.00 0.00 3.46
4915 5139 7.564793 TCCGAAGAAGAATTTGATATGGAAGA 58.435 34.615 0.00 0.00 0.00 2.87
4916 5140 7.712639 TCCGAAGAAGAATTTGATATGGAAGAG 59.287 37.037 0.00 0.00 0.00 2.85
4917 5141 7.041508 CCGAAGAAGAATTTGATATGGAAGAGG 60.042 40.741 0.00 0.00 0.00 3.69
4918 5142 7.712639 CGAAGAAGAATTTGATATGGAAGAGGA 59.287 37.037 0.00 0.00 0.00 3.71
4919 5143 8.977267 AAGAAGAATTTGATATGGAAGAGGAG 57.023 34.615 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.957842 TTTAGTTGGCAGGACACTAATTG 57.042 39.130 9.61 0.00 0.00 2.32
2 3 7.502561 GGATATTTAGTTGGCAGGACACTAATT 59.497 37.037 9.61 8.96 0.00 1.40
4 5 6.069905 TGGATATTTAGTTGGCAGGACACTAA 60.070 38.462 5.60 5.60 0.00 2.24
5 6 5.427157 TGGATATTTAGTTGGCAGGACACTA 59.573 40.000 0.00 0.00 0.00 2.74
6 7 4.227300 TGGATATTTAGTTGGCAGGACACT 59.773 41.667 0.00 0.00 0.00 3.55
7 8 4.523083 TGGATATTTAGTTGGCAGGACAC 58.477 43.478 0.00 0.00 0.00 3.67
8 9 4.853468 TGGATATTTAGTTGGCAGGACA 57.147 40.909 0.00 0.00 0.00 4.02
9 10 6.942576 ACATATGGATATTTAGTTGGCAGGAC 59.057 38.462 7.80 0.00 0.00 3.85
10 11 6.942005 CACATATGGATATTTAGTTGGCAGGA 59.058 38.462 7.80 0.00 0.00 3.86
11 12 6.716628 ACACATATGGATATTTAGTTGGCAGG 59.283 38.462 7.80 0.00 0.00 4.85
12 13 7.587629 CACACATATGGATATTTAGTTGGCAG 58.412 38.462 7.80 0.00 0.00 4.85
13 14 6.016360 GCACACATATGGATATTTAGTTGGCA 60.016 38.462 7.80 0.00 0.00 4.92
14 15 6.016360 TGCACACATATGGATATTTAGTTGGC 60.016 38.462 7.80 0.00 0.00 4.52
15 16 7.509141 TGCACACATATGGATATTTAGTTGG 57.491 36.000 7.80 0.00 0.00 3.77
16 17 8.623903 AGTTGCACACATATGGATATTTAGTTG 58.376 33.333 7.80 0.00 0.00 3.16
18 19 9.494271 CTAGTTGCACACATATGGATATTTAGT 57.506 33.333 7.80 0.00 0.00 2.24
19 20 9.710900 TCTAGTTGCACACATATGGATATTTAG 57.289 33.333 7.80 0.40 0.00 1.85
21 22 8.213679 AGTCTAGTTGCACACATATGGATATTT 58.786 33.333 7.80 0.00 0.00 1.40
22 23 7.739825 AGTCTAGTTGCACACATATGGATATT 58.260 34.615 7.80 0.00 0.00 1.28
23 24 7.308450 AGTCTAGTTGCACACATATGGATAT 57.692 36.000 7.80 0.00 0.00 1.63
24 25 6.731292 AGTCTAGTTGCACACATATGGATA 57.269 37.500 7.80 0.00 0.00 2.59
26 27 6.538945 TTAGTCTAGTTGCACACATATGGA 57.461 37.500 7.80 0.00 0.00 3.41
30 31 9.713713 TTGTAATTTAGTCTAGTTGCACACATA 57.286 29.630 0.00 0.00 0.00 2.29
32 33 7.713507 ACTTGTAATTTAGTCTAGTTGCACACA 59.286 33.333 0.00 0.00 0.00 3.72
33 34 8.084590 ACTTGTAATTTAGTCTAGTTGCACAC 57.915 34.615 0.00 0.00 0.00 3.82
34 35 7.929245 TGACTTGTAATTTAGTCTAGTTGCACA 59.071 33.333 13.07 0.00 41.05 4.57
35 36 8.306680 TGACTTGTAATTTAGTCTAGTTGCAC 57.693 34.615 13.07 0.00 41.05 4.57
36 37 8.770828 GTTGACTTGTAATTTAGTCTAGTTGCA 58.229 33.333 13.07 0.00 41.05 4.08
37 38 8.989980 AGTTGACTTGTAATTTAGTCTAGTTGC 58.010 33.333 13.07 0.00 41.05 4.17
43 44 8.958119 TGTTCAGTTGACTTGTAATTTAGTCT 57.042 30.769 13.07 0.00 41.05 3.24
49 50 9.431887 ACGTATATGTTCAGTTGACTTGTAATT 57.568 29.630 0.00 0.00 0.00 1.40
50 51 8.869897 CACGTATATGTTCAGTTGACTTGTAAT 58.130 33.333 0.00 0.00 0.00 1.89
51 52 7.868922 ACACGTATATGTTCAGTTGACTTGTAA 59.131 33.333 0.00 0.00 0.00 2.41
52 53 7.327518 CACACGTATATGTTCAGTTGACTTGTA 59.672 37.037 0.00 0.00 0.00 2.41
53 54 6.145534 CACACGTATATGTTCAGTTGACTTGT 59.854 38.462 0.00 0.00 0.00 3.16
54 55 6.525355 CACACGTATATGTTCAGTTGACTTG 58.475 40.000 0.00 0.00 0.00 3.16
55 56 5.120208 GCACACGTATATGTTCAGTTGACTT 59.880 40.000 0.00 0.00 0.00 3.01
56 57 4.625742 GCACACGTATATGTTCAGTTGACT 59.374 41.667 0.00 0.00 0.00 3.41
57 58 4.387559 TGCACACGTATATGTTCAGTTGAC 59.612 41.667 0.00 0.00 0.00 3.18
58 59 4.561105 TGCACACGTATATGTTCAGTTGA 58.439 39.130 0.00 0.00 0.00 3.18
94 102 4.148696 GCACACACATTGATGTTTAGTTGC 59.851 41.667 0.00 1.03 39.39 4.17
149 196 6.486253 AATGTAGTCTAGTTGCACACATTG 57.514 37.500 0.00 0.00 34.72 2.82
150 197 9.884636 TTATAATGTAGTCTAGTTGCACACATT 57.115 29.630 0.00 0.00 38.36 2.71
151 198 9.534565 CTTATAATGTAGTCTAGTTGCACACAT 57.465 33.333 0.00 0.00 0.00 3.21
152 199 7.491372 GCTTATAATGTAGTCTAGTTGCACACA 59.509 37.037 0.00 0.00 0.00 3.72
153 200 7.042658 GGCTTATAATGTAGTCTAGTTGCACAC 60.043 40.741 0.00 0.00 0.00 3.82
154 201 6.984474 GGCTTATAATGTAGTCTAGTTGCACA 59.016 38.462 0.00 0.00 0.00 4.57
155 202 7.210873 AGGCTTATAATGTAGTCTAGTTGCAC 58.789 38.462 0.00 0.00 0.00 4.57
156 203 7.361457 AGGCTTATAATGTAGTCTAGTTGCA 57.639 36.000 0.00 0.00 0.00 4.08
157 204 8.578151 AGTAGGCTTATAATGTAGTCTAGTTGC 58.422 37.037 0.00 0.00 30.11 4.17
174 221 9.325198 CACACACATTGATATTTAGTAGGCTTA 57.675 33.333 0.00 0.00 0.00 3.09
175 222 7.201732 GCACACACATTGATATTTAGTAGGCTT 60.202 37.037 0.00 0.00 0.00 4.35
176 223 6.260936 GCACACACATTGATATTTAGTAGGCT 59.739 38.462 0.00 0.00 0.00 4.58
177 224 6.038161 TGCACACACATTGATATTTAGTAGGC 59.962 38.462 0.00 0.00 0.00 3.93
178 225 7.552458 TGCACACACATTGATATTTAGTAGG 57.448 36.000 0.00 0.00 0.00 3.18
179 226 8.668353 AGTTGCACACACATTGATATTTAGTAG 58.332 33.333 0.00 0.00 0.00 2.57
180 227 8.560355 AGTTGCACACACATTGATATTTAGTA 57.440 30.769 0.00 0.00 0.00 1.82
200 247 6.737254 TGGCTTGTAATTTAGTCTAGTTGC 57.263 37.500 0.00 0.00 0.00 4.17
337 392 7.612677 ACGAGATCTTTAAAACTAGACCATGT 58.387 34.615 0.00 0.00 0.00 3.21
340 395 6.320171 CGACGAGATCTTTAAAACTAGACCA 58.680 40.000 0.00 0.00 0.00 4.02
399 454 5.106475 GCCATATCTTTTAAACCACACGTCA 60.106 40.000 0.00 0.00 0.00 4.35
442 497 5.448926 AATTCACGCATTTTTATTTCGGC 57.551 34.783 0.00 0.00 0.00 5.54
454 510 8.511321 TCAGTTAGATAAAACAAATTCACGCAT 58.489 29.630 0.00 0.00 0.00 4.73
456 512 8.788813 CATCAGTTAGATAAAACAAATTCACGC 58.211 33.333 0.00 0.00 34.43 5.34
471 527 7.394641 TGTTCACACTACTCTCATCAGTTAGAT 59.605 37.037 0.00 0.00 37.48 1.98
486 542 6.007936 TGGCATTAAATGTGTTCACACTAC 57.992 37.500 11.30 0.00 46.55 2.73
566 626 2.869503 ATTTGGCGTTCCCGAGCGAT 62.870 55.000 5.07 0.00 37.19 4.58
567 627 2.228389 TATTTGGCGTTCCCGAGCGA 62.228 55.000 5.07 0.00 37.19 4.93
579 639 4.591317 GGTCGCGCGCTATTTGGC 62.591 66.667 30.48 14.65 0.00 4.52
594 654 7.102847 TCCGTTTCAAAATCTAAAAAGTGGT 57.897 32.000 0.00 0.00 0.00 4.16
690 750 5.379827 GTTTCGGTGTGCTAACAAGATTAC 58.620 41.667 0.00 0.00 38.27 1.89
698 758 2.397549 AGTACGTTTCGGTGTGCTAAC 58.602 47.619 0.00 0.00 0.00 2.34
702 762 2.056094 AGTAGTACGTTTCGGTGTGC 57.944 50.000 0.00 0.00 0.00 4.57
896 984 1.517832 GAGGTGGAGACGATGGTGG 59.482 63.158 0.00 0.00 0.00 4.61
1085 1190 2.834549 CAAGAACTAGGCTCCCAGAGAA 59.165 50.000 0.00 0.00 0.00 2.87
1086 1191 2.461695 CAAGAACTAGGCTCCCAGAGA 58.538 52.381 0.00 0.00 0.00 3.10
1087 1192 1.484240 CCAAGAACTAGGCTCCCAGAG 59.516 57.143 0.00 0.00 0.00 3.35
1088 1193 1.203313 ACCAAGAACTAGGCTCCCAGA 60.203 52.381 0.00 0.00 0.00 3.86
1097 1202 3.761218 TCAGAGCAGAGACCAAGAACTAG 59.239 47.826 0.00 0.00 0.00 2.57
1098 1203 3.767711 TCAGAGCAGAGACCAAGAACTA 58.232 45.455 0.00 0.00 0.00 2.24
1127 1257 6.712095 TCAGATCAGGAAAATAATCCAATCGG 59.288 38.462 0.00 0.66 42.27 4.18
1133 1263 6.569226 CGCCAATCAGATCAGGAAAATAATCC 60.569 42.308 6.11 0.00 39.96 3.01
1138 1268 2.954318 CCGCCAATCAGATCAGGAAAAT 59.046 45.455 6.11 0.00 0.00 1.82
1139 1269 2.368439 CCGCCAATCAGATCAGGAAAA 58.632 47.619 6.11 0.00 0.00 2.29
1340 1481 1.840635 AGAACCTAATCCCACTCTGCC 59.159 52.381 0.00 0.00 0.00 4.85
1380 1533 6.259608 ACGGAGAAGAAGCAATTAATCATCAG 59.740 38.462 0.00 0.00 0.00 2.90
1506 1664 1.754226 GTGACAAACTTTTGGGCCTCA 59.246 47.619 4.53 0.00 42.34 3.86
1609 1793 7.270779 ACTACAGTACATCGTCTCACTATACA 58.729 38.462 0.00 0.00 0.00 2.29
1610 1794 7.437565 TGACTACAGTACATCGTCTCACTATAC 59.562 40.741 0.00 0.00 0.00 1.47
1611 1795 7.495055 TGACTACAGTACATCGTCTCACTATA 58.505 38.462 0.00 0.00 0.00 1.31
1626 1810 4.055710 TGGAGACCCAATGACTACAGTA 57.944 45.455 0.00 0.00 40.09 2.74
1664 1859 1.615262 CCTCCACCCAGGGAATTCC 59.385 63.158 14.54 16.74 36.27 3.01
1723 1918 3.930336 TGAGAGGATACACTTGCAACAG 58.070 45.455 0.00 0.00 37.77 3.16
1775 1970 3.868757 GGGACAACCAATTTAGCTTCC 57.131 47.619 0.00 0.00 39.85 3.46
1867 2062 2.191128 ACACCTAGGAGCAGCAAAAG 57.809 50.000 17.98 0.00 0.00 2.27
1948 2143 6.763610 AGCTATAAGTTCAGTATGCCAAGAAC 59.236 38.462 0.00 0.00 40.37 3.01
2013 2218 3.303406 CAAAAGCAACTGAGCACTAAGC 58.697 45.455 0.00 0.00 46.19 3.09
2014 2219 3.243168 TGCAAAAGCAACTGAGCACTAAG 60.243 43.478 0.00 0.00 36.85 2.18
2015 2220 2.687425 TGCAAAAGCAACTGAGCACTAA 59.313 40.909 0.00 0.00 36.85 2.24
2016 2221 2.291465 CTGCAAAAGCAACTGAGCACTA 59.709 45.455 0.00 0.00 36.85 2.74
2017 2222 1.066605 CTGCAAAAGCAACTGAGCACT 59.933 47.619 0.00 0.00 36.85 4.40
2018 2223 1.202336 ACTGCAAAAGCAACTGAGCAC 60.202 47.619 0.00 0.00 36.85 4.40
2019 2224 1.105457 ACTGCAAAAGCAACTGAGCA 58.895 45.000 0.00 0.00 36.85 4.26
2020 2225 1.856597 CAACTGCAAAAGCAACTGAGC 59.143 47.619 0.00 0.00 0.00 4.26
2068 2273 9.638239 GTCAGGTTTTAAATTGAATAGCAATGA 57.362 29.630 0.00 0.00 46.25 2.57
2111 2316 1.050204 AACAAATGGGCACATGCACT 58.950 45.000 0.00 0.00 46.62 4.40
2112 2317 1.532007 CAAACAAATGGGCACATGCAC 59.468 47.619 0.00 1.96 46.69 4.57
2113 2318 1.415289 TCAAACAAATGGGCACATGCA 59.585 42.857 0.00 0.00 44.36 3.96
2246 2452 1.986882 AGGTCAAAAGGAGGCAACAG 58.013 50.000 0.00 0.00 41.41 3.16
2440 2646 5.476599 TGCAAGCCTGTGAAAACTGTATAAT 59.523 36.000 0.00 0.00 0.00 1.28
2613 2819 7.436376 GCAGCAAATTCTTTCCCATATTTAGTC 59.564 37.037 0.00 0.00 0.00 2.59
2652 2858 0.890996 CCCCAGAATCCGGCATAAGC 60.891 60.000 0.00 0.00 41.10 3.09
2679 2885 1.678101 GGAAGTTGGCATATGACCTGC 59.322 52.381 5.99 0.00 38.93 4.85
2739 2945 5.126396 TCGAATCGTATCAGCATCATTCT 57.874 39.130 1.52 0.00 0.00 2.40
2742 2948 5.473039 TGATTCGAATCGTATCAGCATCAT 58.527 37.500 28.07 0.00 38.36 2.45
2752 2958 6.683715 TGCATAGGTATTGATTCGAATCGTA 58.316 36.000 28.07 21.21 38.26 3.43
2878 3084 6.258068 GGGTTTAAGATATTCCGTCTCTGTTG 59.742 42.308 0.00 0.00 0.00 3.33
2888 3094 8.166726 AGATCTTCATGGGGTTTAAGATATTCC 58.833 37.037 5.35 0.00 38.47 3.01
2943 3149 6.149633 AGATTCAAAATAACGAAGCAACCAC 58.850 36.000 0.00 0.00 30.01 4.16
2950 3156 7.535258 CACAAGGTGAGATTCAAAATAACGAAG 59.465 37.037 0.00 0.00 35.23 3.79
2954 3160 7.648142 TGTCACAAGGTGAGATTCAAAATAAC 58.352 34.615 0.00 0.00 43.57 1.89
2976 3182 5.355350 CCATTCTAGTGAAAGGGAACATGTC 59.645 44.000 0.00 0.00 37.39 3.06
2984 3190 4.010349 GTTGGTCCATTCTAGTGAAAGGG 58.990 47.826 0.00 0.00 40.39 3.95
2992 3198 5.187967 ACTGAAGTAGGTTGGTCCATTCTAG 59.812 44.000 0.00 0.00 39.02 2.43
3025 3231 0.250901 TCTCCTTTGGAAGTGGCAGC 60.251 55.000 0.00 0.00 0.00 5.25
3051 3257 0.764890 ACTTGCAGCTACTGGTTCCA 59.235 50.000 0.00 0.00 31.21 3.53
3069 3275 1.961277 CCAGGTTCGTCAGTGGCAC 60.961 63.158 10.29 10.29 0.00 5.01
3074 3280 1.410004 TCTTCACCAGGTTCGTCAGT 58.590 50.000 0.00 0.00 0.00 3.41
3098 3304 1.064654 GTCAAAGCCGCCATCAGATTC 59.935 52.381 0.00 0.00 0.00 2.52
3218 3424 4.012374 GGGTTTGAGAAATCATGAGCAGA 58.988 43.478 0.09 0.00 0.00 4.26
3349 3555 6.165700 ACAAATTGCTTCTTTTCATCTGGT 57.834 33.333 0.00 0.00 0.00 4.00
3403 3609 3.369175 TCTCTCCATAGAAGAAGCAGCA 58.631 45.455 0.00 0.00 0.00 4.41
3404 3610 4.399004 TTCTCTCCATAGAAGAAGCAGC 57.601 45.455 0.00 0.00 31.85 5.25
3488 3694 2.740981 GAGCAGTCACTTCATCAACTGG 59.259 50.000 3.80 0.00 39.57 4.00
3529 3735 3.250744 TGGACGATTCGAGAACATGTTC 58.749 45.455 27.69 27.69 39.78 3.18
3544 3750 0.396435 AATGCACCTGTTCTGGACGA 59.604 50.000 0.00 0.00 0.00 4.20
3571 3777 2.011122 TTTCCCCGCTCTCTATAGGG 57.989 55.000 0.00 0.00 43.41 3.53
3607 3813 0.685785 TTTGGGCAGCTGAAACCACA 60.686 50.000 20.43 12.29 31.65 4.17
3744 3950 6.189859 TGATGATGACTTTCCTTTTGGCTAT 58.810 36.000 0.00 0.00 40.12 2.97
3775 3981 0.390735 ATACCGGTTTCTGCGTCACC 60.391 55.000 15.04 0.00 0.00 4.02
3776 3982 1.435577 AATACCGGTTTCTGCGTCAC 58.564 50.000 15.04 0.00 0.00 3.67
3777 3983 1.801771 CAAATACCGGTTTCTGCGTCA 59.198 47.619 15.04 0.00 0.00 4.35
3778 3984 2.070783 TCAAATACCGGTTTCTGCGTC 58.929 47.619 15.04 0.00 0.00 5.19
3779 3985 2.172851 TCAAATACCGGTTTCTGCGT 57.827 45.000 15.04 0.00 0.00 5.24
3780 3986 2.675844 TGATCAAATACCGGTTTCTGCG 59.324 45.455 15.04 0.00 0.00 5.18
3887 4093 2.986050 TGAGAAGAGGTTGGGGTAGTT 58.014 47.619 0.00 0.00 0.00 2.24
3888 4094 2.715763 TGAGAAGAGGTTGGGGTAGT 57.284 50.000 0.00 0.00 0.00 2.73
3953 4160 1.901833 GTGGCCCCAATGACTTCAAAT 59.098 47.619 0.00 0.00 0.00 2.32
4083 4290 8.986847 CAATTCACACATTATAAACAAAGGCAA 58.013 29.630 0.00 0.00 0.00 4.52
4216 4423 9.589111 CCAGACTCAGATCATGATAATCATTAG 57.411 37.037 8.54 2.65 34.28 1.73
4219 4426 7.016366 ACACCAGACTCAGATCATGATAATCAT 59.984 37.037 8.54 0.00 37.65 2.45
4301 4509 5.834239 TTCCTCGAAAAACGCTAGTAAAG 57.166 39.130 0.00 0.00 42.26 1.85
4311 4519 8.450964 TCATCATCTGTATTTTCCTCGAAAAAC 58.549 33.333 3.85 5.03 43.32 2.43
4410 4632 6.294473 CAGCCAAGGTGAGATATTAGAACAT 58.706 40.000 0.00 0.00 32.22 2.71
4412 4634 5.059833 CCAGCCAAGGTGAGATATTAGAAC 58.940 45.833 0.00 0.00 32.22 3.01
4436 4659 5.888982 ATAACTGTTCCTAACCGGATGAT 57.111 39.130 9.46 0.00 42.70 2.45
4473 4697 4.821260 TGTTGCAGATGCTCTAACAAGAAA 59.179 37.500 6.35 0.00 42.66 2.52
4474 4698 4.388485 TGTTGCAGATGCTCTAACAAGAA 58.612 39.130 6.35 0.00 42.66 2.52
4484 4708 3.437795 GCGGCTGTTGCAGATGCT 61.438 61.111 6.35 0.00 42.66 3.79
4485 4709 4.824166 CGCGGCTGTTGCAGATGC 62.824 66.667 0.00 0.00 41.91 3.91
4486 4710 4.824166 GCGCGGCTGTTGCAGATG 62.824 66.667 8.83 0.00 41.91 2.90
4487 4711 2.930385 ATAGCGCGGCTGTTGCAGAT 62.930 55.000 8.83 4.62 40.10 2.90
4488 4712 2.291457 TATAGCGCGGCTGTTGCAGA 62.291 55.000 8.83 2.67 40.10 4.26
4489 4713 1.224069 ATATAGCGCGGCTGTTGCAG 61.224 55.000 8.83 0.00 40.10 4.41
4490 4714 0.032815 TATATAGCGCGGCTGTTGCA 59.967 50.000 8.83 0.00 40.10 4.08
4491 4715 1.126846 CTTATATAGCGCGGCTGTTGC 59.873 52.381 8.83 3.97 40.10 4.17
4492 4716 1.126846 GCTTATATAGCGCGGCTGTTG 59.873 52.381 8.83 0.00 40.71 3.33
4493 4717 1.429463 GCTTATATAGCGCGGCTGTT 58.571 50.000 8.83 0.97 40.71 3.16
4494 4718 3.123674 GCTTATATAGCGCGGCTGT 57.876 52.632 8.83 6.64 40.71 4.40
4512 4736 0.859232 ACTAATATTTCAGCGCGGCG 59.141 50.000 19.62 19.62 0.00 6.46
4513 4737 1.597663 ACACTAATATTTCAGCGCGGC 59.402 47.619 8.83 0.00 0.00 6.53
4514 4738 3.944422 AACACTAATATTTCAGCGCGG 57.056 42.857 8.83 0.00 0.00 6.46
4534 4758 0.095589 CGGTAGCGCGCACATAAAAA 59.904 50.000 35.10 4.56 0.00 1.94
4535 4759 1.710919 CGGTAGCGCGCACATAAAA 59.289 52.632 35.10 6.11 0.00 1.52
4536 4760 2.804759 GCGGTAGCGCGCACATAAA 61.805 57.895 35.10 8.06 0.00 1.40
4537 4761 3.259020 GCGGTAGCGCGCACATAA 61.259 61.111 35.10 10.05 0.00 1.90
4565 4789 3.914605 TAGATATGCCGCGCGCTGG 62.915 63.158 30.48 29.75 38.78 4.85
4566 4790 2.430751 TAGATATGCCGCGCGCTG 60.431 61.111 30.48 24.69 38.78 5.18
4567 4791 2.126307 CTAGATATGCCGCGCGCT 60.126 61.111 30.48 17.49 38.78 5.92
4568 4792 1.945776 GAACTAGATATGCCGCGCGC 61.946 60.000 27.36 23.91 38.31 6.86
4569 4793 0.663269 TGAACTAGATATGCCGCGCG 60.663 55.000 25.67 25.67 0.00 6.86
4570 4794 1.063806 CTGAACTAGATATGCCGCGC 58.936 55.000 0.00 0.00 0.00 6.86
4571 4795 2.054363 CACTGAACTAGATATGCCGCG 58.946 52.381 0.00 0.00 0.00 6.46
4572 4796 1.795286 GCACTGAACTAGATATGCCGC 59.205 52.381 0.00 0.00 0.00 6.53
4573 4797 2.054363 CGCACTGAACTAGATATGCCG 58.946 52.381 0.00 0.00 0.00 5.69
4574 4798 1.795286 GCGCACTGAACTAGATATGCC 59.205 52.381 0.30 0.00 0.00 4.40
4575 4799 1.453524 CGCGCACTGAACTAGATATGC 59.546 52.381 8.75 0.00 0.00 3.14
4576 4800 2.054363 CCGCGCACTGAACTAGATATG 58.946 52.381 8.75 0.00 0.00 1.78
4577 4801 1.000163 CCCGCGCACTGAACTAGATAT 60.000 52.381 8.75 0.00 0.00 1.63
4578 4802 0.384309 CCCGCGCACTGAACTAGATA 59.616 55.000 8.75 0.00 0.00 1.98
4579 4803 1.141881 CCCGCGCACTGAACTAGAT 59.858 57.895 8.75 0.00 0.00 1.98
4580 4804 2.571757 CCCGCGCACTGAACTAGA 59.428 61.111 8.75 0.00 0.00 2.43
4581 4805 3.188786 GCCCGCGCACTGAACTAG 61.189 66.667 8.75 0.00 34.03 2.57
4582 4806 4.752879 GGCCCGCGCACTGAACTA 62.753 66.667 8.75 0.00 36.38 2.24
4612 4836 2.648724 CAGCAAATAAGCGGCGCG 60.649 61.111 27.59 12.27 40.15 6.86
4613 4837 2.951227 GCAGCAAATAAGCGGCGC 60.951 61.111 26.86 26.86 45.03 6.53
4641 4865 2.738521 TTTGAGAGTCCAGCGCGC 60.739 61.111 26.66 26.66 0.00 6.86
4642 4866 2.720758 CGTTTGAGAGTCCAGCGCG 61.721 63.158 0.00 0.00 0.00 6.86
4643 4867 3.016474 GCGTTTGAGAGTCCAGCGC 62.016 63.158 0.00 0.00 36.06 5.92
4644 4868 0.946221 AAGCGTTTGAGAGTCCAGCG 60.946 55.000 0.00 0.00 0.00 5.18
4645 4869 0.793250 GAAGCGTTTGAGAGTCCAGC 59.207 55.000 0.00 0.00 0.00 4.85
4646 4870 1.001406 AGGAAGCGTTTGAGAGTCCAG 59.999 52.381 0.00 0.00 0.00 3.86
4647 4871 1.000955 GAGGAAGCGTTTGAGAGTCCA 59.999 52.381 0.00 0.00 0.00 4.02
4648 4872 1.673329 GGAGGAAGCGTTTGAGAGTCC 60.673 57.143 0.00 0.00 0.00 3.85
4649 4873 1.715993 GGAGGAAGCGTTTGAGAGTC 58.284 55.000 0.00 0.00 0.00 3.36
4650 4874 0.038159 CGGAGGAAGCGTTTGAGAGT 60.038 55.000 0.00 0.00 0.00 3.24
4651 4875 0.038159 ACGGAGGAAGCGTTTGAGAG 60.038 55.000 0.00 0.00 0.00 3.20
4652 4876 0.038526 GACGGAGGAAGCGTTTGAGA 60.039 55.000 0.00 0.00 0.00 3.27
4653 4877 0.038159 AGACGGAGGAAGCGTTTGAG 60.038 55.000 0.00 0.00 0.00 3.02
4654 4878 0.038526 GAGACGGAGGAAGCGTTTGA 60.039 55.000 0.00 0.00 0.00 2.69
4655 4879 1.014564 GGAGACGGAGGAAGCGTTTG 61.015 60.000 0.00 0.00 0.00 2.93
4656 4880 1.292541 GGAGACGGAGGAAGCGTTT 59.707 57.895 0.00 0.00 0.00 3.60
4657 4881 2.647158 GGGAGACGGAGGAAGCGTT 61.647 63.158 0.00 0.00 0.00 4.84
4658 4882 3.069318 GGGAGACGGAGGAAGCGT 61.069 66.667 0.00 0.00 0.00 5.07
4659 4883 2.756283 AGGGAGACGGAGGAAGCG 60.756 66.667 0.00 0.00 0.00 4.68
4660 4884 0.106619 TAGAGGGAGACGGAGGAAGC 60.107 60.000 0.00 0.00 0.00 3.86
4661 4885 1.213430 ACTAGAGGGAGACGGAGGAAG 59.787 57.143 0.00 0.00 0.00 3.46
4662 4886 1.212441 GACTAGAGGGAGACGGAGGAA 59.788 57.143 0.00 0.00 0.00 3.36
4663 4887 0.838608 GACTAGAGGGAGACGGAGGA 59.161 60.000 0.00 0.00 0.00 3.71
4664 4888 0.547075 TGACTAGAGGGAGACGGAGG 59.453 60.000 0.00 0.00 0.00 4.30
4665 4889 1.670791 GTGACTAGAGGGAGACGGAG 58.329 60.000 0.00 0.00 0.00 4.63
4666 4890 0.255318 GGTGACTAGAGGGAGACGGA 59.745 60.000 0.00 0.00 0.00 4.69
4667 4891 1.096386 CGGTGACTAGAGGGAGACGG 61.096 65.000 0.00 0.00 0.00 4.79
4668 4892 1.716826 GCGGTGACTAGAGGGAGACG 61.717 65.000 0.00 0.00 0.00 4.18
4669 4893 1.385756 GGCGGTGACTAGAGGGAGAC 61.386 65.000 0.00 0.00 0.00 3.36
4670 4894 1.076923 GGCGGTGACTAGAGGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
4671 4895 2.482333 CGGCGGTGACTAGAGGGAG 61.482 68.421 0.00 0.00 0.00 4.30
4672 4896 2.439701 CGGCGGTGACTAGAGGGA 60.440 66.667 0.00 0.00 0.00 4.20
4673 4897 4.208686 GCGGCGGTGACTAGAGGG 62.209 72.222 9.78 0.00 0.00 4.30
4674 4898 4.208686 GGCGGCGGTGACTAGAGG 62.209 72.222 9.78 0.00 0.00 3.69
4675 4899 4.208686 GGGCGGCGGTGACTAGAG 62.209 72.222 9.78 0.00 0.00 2.43
4702 4926 3.343788 CTGTCGTCGGAGGACTGCC 62.344 68.421 25.67 5.89 41.16 4.85
4703 4927 2.179517 CTGTCGTCGGAGGACTGC 59.820 66.667 25.67 6.20 41.16 4.40
4704 4928 2.179517 GCTGTCGTCGGAGGACTG 59.820 66.667 25.67 25.02 41.16 3.51
4705 4929 3.432588 CGCTGTCGTCGGAGGACT 61.433 66.667 25.67 0.00 41.16 3.85
4747 4971 3.723348 GTCGAACACCTTGCGGGC 61.723 66.667 0.00 0.00 39.10 6.13
4748 4972 1.440938 TTTGTCGAACACCTTGCGGG 61.441 55.000 0.00 0.00 41.89 6.13
4749 4973 0.378962 TTTTGTCGAACACCTTGCGG 59.621 50.000 0.00 0.00 0.00 5.69
4750 4974 1.462791 GTTTTGTCGAACACCTTGCG 58.537 50.000 0.00 0.00 0.00 4.85
4751 4975 1.462791 CGTTTTGTCGAACACCTTGC 58.537 50.000 0.00 0.00 0.00 4.01
4752 4976 1.462791 GCGTTTTGTCGAACACCTTG 58.537 50.000 0.00 0.00 0.00 3.61
4753 4977 0.379316 GGCGTTTTGTCGAACACCTT 59.621 50.000 0.00 0.00 30.80 3.50
4754 4978 1.441732 GGGCGTTTTGTCGAACACCT 61.442 55.000 0.00 0.00 33.33 4.00
4755 4979 1.009335 GGGCGTTTTGTCGAACACC 60.009 57.895 0.00 0.00 32.28 4.16
4756 4980 1.368374 CGGGCGTTTTGTCGAACAC 60.368 57.895 0.00 0.00 0.00 3.32
4757 4981 3.015677 CGGGCGTTTTGTCGAACA 58.984 55.556 0.00 0.00 0.00 3.18
4758 4982 2.426261 GCGGGCGTTTTGTCGAAC 60.426 61.111 0.00 0.00 0.00 3.95
4759 4983 2.381665 CTTGCGGGCGTTTTGTCGAA 62.382 55.000 0.00 0.00 0.00 3.71
4760 4984 2.887889 CTTGCGGGCGTTTTGTCGA 61.888 57.895 0.00 0.00 0.00 4.20
4761 4985 2.426752 CTTGCGGGCGTTTTGTCG 60.427 61.111 0.00 0.00 0.00 4.35
4762 4986 1.508808 TACCTTGCGGGCGTTTTGTC 61.509 55.000 0.00 0.00 39.10 3.18
4763 4987 0.891904 ATACCTTGCGGGCGTTTTGT 60.892 50.000 0.00 0.00 39.10 2.83
4764 4988 0.455972 CATACCTTGCGGGCGTTTTG 60.456 55.000 0.00 0.00 39.10 2.44
4765 4989 0.891904 ACATACCTTGCGGGCGTTTT 60.892 50.000 0.00 0.00 39.10 2.43
4766 4990 0.036199 TACATACCTTGCGGGCGTTT 60.036 50.000 0.00 0.00 39.10 3.60
4767 4991 0.179468 ATACATACCTTGCGGGCGTT 59.821 50.000 0.00 0.00 39.10 4.84
4768 4992 0.179468 AATACATACCTTGCGGGCGT 59.821 50.000 0.00 0.00 39.10 5.68
4769 4993 0.586319 CAATACATACCTTGCGGGCG 59.414 55.000 0.00 0.00 39.10 6.13
4770 4994 0.310854 GCAATACATACCTTGCGGGC 59.689 55.000 0.00 0.00 38.47 6.13
4774 4998 5.567138 AGTTTGAGCAATACATACCTTGC 57.433 39.130 0.00 0.00 46.32 4.01
4775 4999 7.023575 GTGAAGTTTGAGCAATACATACCTTG 58.976 38.462 0.00 0.00 0.00 3.61
4776 5000 6.714810 TGTGAAGTTTGAGCAATACATACCTT 59.285 34.615 0.00 0.00 0.00 3.50
4777 5001 6.237901 TGTGAAGTTTGAGCAATACATACCT 58.762 36.000 0.00 0.00 0.00 3.08
4778 5002 6.149474 ACTGTGAAGTTTGAGCAATACATACC 59.851 38.462 0.00 0.00 0.00 2.73
4779 5003 7.133891 ACTGTGAAGTTTGAGCAATACATAC 57.866 36.000 0.00 0.00 0.00 2.39
4780 5004 7.744087 AACTGTGAAGTTTGAGCAATACATA 57.256 32.000 0.00 0.00 0.00 2.29
4781 5005 6.639632 AACTGTGAAGTTTGAGCAATACAT 57.360 33.333 0.00 0.00 0.00 2.29
4782 5006 6.449635 AAACTGTGAAGTTTGAGCAATACA 57.550 33.333 3.17 0.00 40.12 2.29
4783 5007 7.755582 AAAAACTGTGAAGTTTGAGCAATAC 57.244 32.000 4.71 0.00 40.67 1.89
4784 5008 8.462811 TGTAAAAACTGTGAAGTTTGAGCAATA 58.537 29.630 4.71 0.00 40.67 1.90
4785 5009 7.319646 TGTAAAAACTGTGAAGTTTGAGCAAT 58.680 30.769 4.71 0.00 40.67 3.56
4786 5010 6.682746 TGTAAAAACTGTGAAGTTTGAGCAA 58.317 32.000 4.71 0.00 40.67 3.91
4787 5011 6.260870 TGTAAAAACTGTGAAGTTTGAGCA 57.739 33.333 4.71 2.43 40.67 4.26
4788 5012 6.972328 TCATGTAAAAACTGTGAAGTTTGAGC 59.028 34.615 4.71 0.21 40.67 4.26
4789 5013 8.909708 TTCATGTAAAAACTGTGAAGTTTGAG 57.090 30.769 4.71 0.00 40.67 3.02
4790 5014 9.868277 AATTCATGTAAAAACTGTGAAGTTTGA 57.132 25.926 4.71 0.00 40.67 2.69
4793 5017 9.097257 CCAAATTCATGTAAAAACTGTGAAGTT 57.903 29.630 0.00 0.00 37.51 2.66
4794 5018 8.257306 ACCAAATTCATGTAAAAACTGTGAAGT 58.743 29.630 0.00 0.00 32.93 3.01
4795 5019 8.542132 CACCAAATTCATGTAAAAACTGTGAAG 58.458 33.333 0.00 0.00 32.93 3.02
4796 5020 7.010923 GCACCAAATTCATGTAAAAACTGTGAA 59.989 33.333 0.00 0.00 33.82 3.18
4797 5021 6.478344 GCACCAAATTCATGTAAAAACTGTGA 59.522 34.615 0.00 0.00 0.00 3.58
4798 5022 6.257411 TGCACCAAATTCATGTAAAAACTGTG 59.743 34.615 0.00 0.00 0.00 3.66
4799 5023 6.344500 TGCACCAAATTCATGTAAAAACTGT 58.656 32.000 0.00 0.00 0.00 3.55
4800 5024 6.841443 TGCACCAAATTCATGTAAAAACTG 57.159 33.333 0.00 0.00 0.00 3.16
4801 5025 6.991531 ACATGCACCAAATTCATGTAAAAACT 59.008 30.769 7.69 0.00 46.10 2.66
4802 5026 7.188468 ACATGCACCAAATTCATGTAAAAAC 57.812 32.000 7.69 0.00 46.10 2.43
4803 5027 7.496920 TCAACATGCACCAAATTCATGTAAAAA 59.503 29.630 9.40 0.00 46.92 1.94
4804 5028 6.988580 TCAACATGCACCAAATTCATGTAAAA 59.011 30.769 9.40 0.00 46.92 1.52
4805 5029 6.519382 TCAACATGCACCAAATTCATGTAAA 58.481 32.000 9.40 0.76 46.92 2.01
4806 5030 6.094193 TCAACATGCACCAAATTCATGTAA 57.906 33.333 9.40 1.04 46.92 2.41
4807 5031 5.718724 TCAACATGCACCAAATTCATGTA 57.281 34.783 9.40 0.00 46.92 2.29
4809 5033 7.780008 ATAATCAACATGCACCAAATTCATG 57.220 32.000 0.00 3.25 42.27 3.07
4810 5034 8.698210 ACTATAATCAACATGCACCAAATTCAT 58.302 29.630 0.00 0.00 0.00 2.57
4811 5035 8.065473 ACTATAATCAACATGCACCAAATTCA 57.935 30.769 0.00 0.00 0.00 2.57
4812 5036 8.931385 AACTATAATCAACATGCACCAAATTC 57.069 30.769 0.00 0.00 0.00 2.17
4813 5037 9.723601 AAAACTATAATCAACATGCACCAAATT 57.276 25.926 0.00 0.00 0.00 1.82
4814 5038 9.723601 AAAAACTATAATCAACATGCACCAAAT 57.276 25.926 0.00 0.00 0.00 2.32
4853 5077 8.948631 ACGAACTCATCTACAATGTTCAATAT 57.051 30.769 0.00 0.00 37.46 1.28
4854 5078 8.032451 TGACGAACTCATCTACAATGTTCAATA 58.968 33.333 0.00 0.00 37.46 1.90
4855 5079 6.873605 TGACGAACTCATCTACAATGTTCAAT 59.126 34.615 0.00 0.00 37.46 2.57
4856 5080 6.220201 TGACGAACTCATCTACAATGTTCAA 58.780 36.000 0.00 0.00 37.46 2.69
4857 5081 5.778862 TGACGAACTCATCTACAATGTTCA 58.221 37.500 0.00 0.00 37.46 3.18
4858 5082 6.893958 ATGACGAACTCATCTACAATGTTC 57.106 37.500 0.00 0.00 34.07 3.18
4867 5091 8.765219 CGGAAAAATTATATGACGAACTCATCT 58.235 33.333 0.00 0.00 40.38 2.90
4868 5092 8.761497 TCGGAAAAATTATATGACGAACTCATC 58.239 33.333 0.00 0.00 40.38 2.92
4869 5093 8.657074 TCGGAAAAATTATATGACGAACTCAT 57.343 30.769 0.00 0.00 42.68 2.90
4870 5094 8.481974 TTCGGAAAAATTATATGACGAACTCA 57.518 30.769 0.00 0.00 34.67 3.41
4871 5095 8.814235 TCTTCGGAAAAATTATATGACGAACTC 58.186 33.333 0.00 0.00 35.58 3.01
4872 5096 8.712285 TCTTCGGAAAAATTATATGACGAACT 57.288 30.769 0.00 0.00 35.58 3.01
4873 5097 9.422196 CTTCTTCGGAAAAATTATATGACGAAC 57.578 33.333 0.00 0.00 35.58 3.95
4874 5098 9.373603 TCTTCTTCGGAAAAATTATATGACGAA 57.626 29.630 0.00 0.00 37.50 3.85
4875 5099 8.936070 TCTTCTTCGGAAAAATTATATGACGA 57.064 30.769 0.00 0.00 33.12 4.20
4885 5109 9.807649 CCATATCAAATTCTTCTTCGGAAAAAT 57.192 29.630 0.00 0.00 33.12 1.82
4886 5110 9.019656 TCCATATCAAATTCTTCTTCGGAAAAA 57.980 29.630 0.00 0.00 33.12 1.94
4887 5111 8.574251 TCCATATCAAATTCTTCTTCGGAAAA 57.426 30.769 0.00 0.00 33.12 2.29
4888 5112 8.574251 TTCCATATCAAATTCTTCTTCGGAAA 57.426 30.769 0.00 0.00 33.12 3.13
4889 5113 8.046708 TCTTCCATATCAAATTCTTCTTCGGAA 58.953 33.333 0.00 0.00 0.00 4.30
4890 5114 7.564793 TCTTCCATATCAAATTCTTCTTCGGA 58.435 34.615 0.00 0.00 0.00 4.55
4891 5115 7.041508 CCTCTTCCATATCAAATTCTTCTTCGG 60.042 40.741 0.00 0.00 0.00 4.30
4892 5116 7.712639 TCCTCTTCCATATCAAATTCTTCTTCG 59.287 37.037 0.00 0.00 0.00 3.79
4893 5117 8.970859 TCCTCTTCCATATCAAATTCTTCTTC 57.029 34.615 0.00 0.00 0.00 2.87
4894 5118 8.977267 CTCCTCTTCCATATCAAATTCTTCTT 57.023 34.615 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.