Multiple sequence alignment - TraesCS3A01G456600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G456600 chr3A 100.000 3197 0 0 1 3197 693614254 693611058 0.000000e+00 5904
1 TraesCS3A01G456600 chr3A 94.815 135 7 0 211 345 649164109 649164243 8.990000e-51 211
2 TraesCS3A01G456600 chr3A 93.431 137 8 1 209 345 703404127 703403992 5.410000e-48 202
3 TraesCS3A01G456600 chr1A 96.727 2597 56 11 624 3197 77263364 77265954 0.000000e+00 4298
4 TraesCS3A01G456600 chr1A 96.324 2584 69 5 626 3197 25271006 25268437 0.000000e+00 4222
5 TraesCS3A01G456600 chr1A 94.715 1930 51 15 626 2526 405515555 405513648 0.000000e+00 2952
6 TraesCS3A01G456600 chr6A 96.378 2595 66 13 626 3197 587986824 587984235 0.000000e+00 4246
7 TraesCS3A01G456600 chr6A 93.431 137 9 0 209 345 23971961 23971825 1.500000e-48 204
8 TraesCS3A01G456600 chr6A 93.431 137 9 0 209 345 422776084 422775948 1.500000e-48 204
9 TraesCS3A01G456600 chr6A 92.199 141 11 0 209 349 80803210 80803070 1.940000e-47 200
10 TraesCS3A01G456600 chr5A 95.965 2602 70 7 626 3197 540625170 540622574 0.000000e+00 4191
11 TraesCS3A01G456600 chr1D 95.744 2608 68 13 626 3197 316243968 316241368 0.000000e+00 4161
12 TraesCS3A01G456600 chr3D 95.669 2609 71 13 625 3197 334132 336734 0.000000e+00 4154
13 TraesCS3A01G456600 chr3D 95.467 2603 74 16 626 3197 468955024 468957613 0.000000e+00 4113
14 TraesCS3A01G456600 chr3D 89.100 1945 149 34 626 2525 383173067 383171141 0.000000e+00 2359
15 TraesCS3A01G456600 chr3D 88.145 1763 141 33 626 2346 149758703 149760439 0.000000e+00 2036
16 TraesCS3A01G456600 chr3D 94.423 1022 30 13 2179 3197 610059709 610058712 0.000000e+00 1546
17 TraesCS3A01G456600 chr3D 87.245 196 11 3 382 577 557878061 557877880 8.990000e-51 211
18 TraesCS3A01G456600 chr2D 95.667 2608 70 12 626 3197 617340745 617343345 0.000000e+00 4150
19 TraesCS3A01G456600 chr7D 95.437 2608 66 21 626 3197 531067727 531065137 0.000000e+00 4108
20 TraesCS3A01G456600 chr7D 88.382 2651 212 43 626 3197 503838182 503835549 0.000000e+00 3101
21 TraesCS3A01G456600 chr5D 95.322 2608 75 14 626 3197 78602934 78600338 0.000000e+00 4096
22 TraesCS3A01G456600 chr5D 95.234 2602 72 20 626 3197 552029045 552026466 0.000000e+00 4071
23 TraesCS3A01G456600 chr4A 94.140 2611 101 20 624 3197 731637350 731634755 0.000000e+00 3927
24 TraesCS3A01G456600 chr4A 93.203 2604 107 24 626 3197 478227133 478229698 0.000000e+00 3764
25 TraesCS3A01G456600 chr4A 92.701 137 10 0 209 345 631371581 631371717 7.000000e-47 198
26 TraesCS3A01G456600 chr7A 97.336 1802 45 2 1397 3197 70256082 70254283 0.000000e+00 3059
27 TraesCS3A01G456600 chr7A 94.245 139 8 0 209 347 696986216 696986078 2.500000e-51 213
28 TraesCS3A01G456600 chr7B 88.553 1092 84 22 626 1685 156416779 156415697 0.000000e+00 1286
29 TraesCS3A01G456600 chr3B 89.668 271 26 2 351 621 740500597 740500329 8.490000e-91 344
30 TraesCS3A01G456600 chr3B 88.636 264 28 2 358 621 740093714 740093453 1.430000e-83 320
31 TraesCS3A01G456600 chr3B 91.489 141 8 2 22 162 740093942 740093806 1.170000e-44 191
32 TraesCS3A01G456600 chr2A 94.964 139 7 0 209 347 743375360 743375498 5.370000e-53 219
33 TraesCS3A01G456600 chr2A 94.203 138 8 0 209 346 769193296 769193433 8.990000e-51 211


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G456600 chr3A 693611058 693614254 3196 True 5904 5904 100.000 1 3197 1 chr3A.!!$R1 3196
1 TraesCS3A01G456600 chr1A 77263364 77265954 2590 False 4298 4298 96.727 624 3197 1 chr1A.!!$F1 2573
2 TraesCS3A01G456600 chr1A 25268437 25271006 2569 True 4222 4222 96.324 626 3197 1 chr1A.!!$R1 2571
3 TraesCS3A01G456600 chr1A 405513648 405515555 1907 True 2952 2952 94.715 626 2526 1 chr1A.!!$R2 1900
4 TraesCS3A01G456600 chr6A 587984235 587986824 2589 True 4246 4246 96.378 626 3197 1 chr6A.!!$R4 2571
5 TraesCS3A01G456600 chr5A 540622574 540625170 2596 True 4191 4191 95.965 626 3197 1 chr5A.!!$R1 2571
6 TraesCS3A01G456600 chr1D 316241368 316243968 2600 True 4161 4161 95.744 626 3197 1 chr1D.!!$R1 2571
7 TraesCS3A01G456600 chr3D 334132 336734 2602 False 4154 4154 95.669 625 3197 1 chr3D.!!$F1 2572
8 TraesCS3A01G456600 chr3D 468955024 468957613 2589 False 4113 4113 95.467 626 3197 1 chr3D.!!$F3 2571
9 TraesCS3A01G456600 chr3D 383171141 383173067 1926 True 2359 2359 89.100 626 2525 1 chr3D.!!$R1 1899
10 TraesCS3A01G456600 chr3D 149758703 149760439 1736 False 2036 2036 88.145 626 2346 1 chr3D.!!$F2 1720
11 TraesCS3A01G456600 chr3D 610058712 610059709 997 True 1546 1546 94.423 2179 3197 1 chr3D.!!$R3 1018
12 TraesCS3A01G456600 chr2D 617340745 617343345 2600 False 4150 4150 95.667 626 3197 1 chr2D.!!$F1 2571
13 TraesCS3A01G456600 chr7D 531065137 531067727 2590 True 4108 4108 95.437 626 3197 1 chr7D.!!$R2 2571
14 TraesCS3A01G456600 chr7D 503835549 503838182 2633 True 3101 3101 88.382 626 3197 1 chr7D.!!$R1 2571
15 TraesCS3A01G456600 chr5D 78600338 78602934 2596 True 4096 4096 95.322 626 3197 1 chr5D.!!$R1 2571
16 TraesCS3A01G456600 chr5D 552026466 552029045 2579 True 4071 4071 95.234 626 3197 1 chr5D.!!$R2 2571
17 TraesCS3A01G456600 chr4A 731634755 731637350 2595 True 3927 3927 94.140 624 3197 1 chr4A.!!$R1 2573
18 TraesCS3A01G456600 chr4A 478227133 478229698 2565 False 3764 3764 93.203 626 3197 1 chr4A.!!$F1 2571
19 TraesCS3A01G456600 chr7A 70254283 70256082 1799 True 3059 3059 97.336 1397 3197 1 chr7A.!!$R1 1800
20 TraesCS3A01G456600 chr7B 156415697 156416779 1082 True 1286 1286 88.553 626 1685 1 chr7B.!!$R1 1059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 494 0.030504 TGCACGTGCCTTGTTCAATG 59.969 50.0 35.72 0.0 41.18 2.82 F
543 544 0.032615 TGAGCTCCTCCTCTCCCTTC 60.033 60.0 12.15 0.0 33.02 3.46 F
544 545 0.261696 GAGCTCCTCCTCTCCCTTCT 59.738 60.0 0.87 0.0 0.00 2.85 F
548 549 0.618968 TCCTCCTCTCCCTTCTTGCC 60.619 60.0 0.00 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1320 1381 1.547372 GTCAGTGCCTTCAAATGCCAT 59.453 47.619 0.00 0.00 0.00 4.40 R
1934 2045 2.158769 TGCTCCTCAAGTTGCTTCTTCA 60.159 45.455 0.00 0.00 0.00 3.02 R
2123 2234 2.708861 TGACCAACCTTAAGGAGCTCAA 59.291 45.455 28.52 6.55 38.94 3.02 R
2551 2702 7.063593 TGCTATCTATGGGATACTAGATGTCC 58.936 42.308 0.00 0.32 35.86 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.760634 TTGAGCGATGCAAGGTAAGA 57.239 45.000 0.00 0.00 0.00 2.10
22 23 2.760634 TGAGCGATGCAAGGTAAGAA 57.239 45.000 0.00 0.00 0.00 2.52
23 24 3.052455 TGAGCGATGCAAGGTAAGAAA 57.948 42.857 0.00 0.00 0.00 2.52
24 25 3.609853 TGAGCGATGCAAGGTAAGAAAT 58.390 40.909 0.00 0.00 0.00 2.17
25 26 3.623060 TGAGCGATGCAAGGTAAGAAATC 59.377 43.478 0.00 0.00 0.00 2.17
26 27 3.873952 GAGCGATGCAAGGTAAGAAATCT 59.126 43.478 0.00 0.00 0.00 2.40
27 28 5.023533 AGCGATGCAAGGTAAGAAATCTA 57.976 39.130 0.00 0.00 0.00 1.98
28 29 4.811557 AGCGATGCAAGGTAAGAAATCTAC 59.188 41.667 0.00 0.00 0.00 2.59
29 30 4.024809 GCGATGCAAGGTAAGAAATCTACC 60.025 45.833 0.00 0.00 0.00 3.18
30 31 5.116180 CGATGCAAGGTAAGAAATCTACCA 58.884 41.667 0.00 0.00 36.37 3.25
31 32 5.584649 CGATGCAAGGTAAGAAATCTACCAA 59.415 40.000 0.00 0.00 36.37 3.67
32 33 6.456988 CGATGCAAGGTAAGAAATCTACCAAC 60.457 42.308 0.00 0.00 36.37 3.77
33 34 5.876357 TGCAAGGTAAGAAATCTACCAACT 58.124 37.500 2.10 0.00 36.37 3.16
34 35 6.303839 TGCAAGGTAAGAAATCTACCAACTT 58.696 36.000 2.10 0.00 36.37 2.66
35 36 6.775629 TGCAAGGTAAGAAATCTACCAACTTT 59.224 34.615 2.10 0.00 36.37 2.66
36 37 7.286775 TGCAAGGTAAGAAATCTACCAACTTTT 59.713 33.333 2.10 0.00 36.37 2.27
37 38 8.141909 GCAAGGTAAGAAATCTACCAACTTTTT 58.858 33.333 2.10 0.00 36.37 1.94
50 51 9.569122 TCTACCAACTTTTTATTAGCTTTCAGT 57.431 29.630 0.00 0.00 0.00 3.41
64 65 9.784531 ATTAGCTTTCAGTAATAGTGCATACAT 57.215 29.630 0.00 0.00 0.00 2.29
67 68 9.212641 AGCTTTCAGTAATAGTGCATACATATG 57.787 33.333 0.00 0.00 36.78 1.78
68 69 8.993121 GCTTTCAGTAATAGTGCATACATATGT 58.007 33.333 13.93 13.93 36.11 2.29
70 71 9.830975 TTTCAGTAATAGTGCATACATATGTGT 57.169 29.630 18.81 9.13 42.39 3.72
71 72 9.830975 TTCAGTAATAGTGCATACATATGTGTT 57.169 29.630 18.81 2.99 39.77 3.32
72 73 9.830975 TCAGTAATAGTGCATACATATGTGTTT 57.169 29.630 18.81 4.61 39.77 2.83
75 76 9.663904 GTAATAGTGCATACATATGTGTTTTGG 57.336 33.333 18.81 1.14 39.77 3.28
76 77 8.518430 AATAGTGCATACATATGTGTTTTGGA 57.482 30.769 18.81 8.91 39.77 3.53
77 78 8.696043 ATAGTGCATACATATGTGTTTTGGAT 57.304 30.769 18.81 0.00 39.77 3.41
78 79 6.798482 AGTGCATACATATGTGTTTTGGATG 58.202 36.000 18.81 12.47 39.77 3.51
79 80 6.377996 AGTGCATACATATGTGTTTTGGATGT 59.622 34.615 18.81 2.24 39.77 3.06
80 81 6.473131 GTGCATACATATGTGTTTTGGATGTG 59.527 38.462 18.81 0.00 39.77 3.21
81 82 6.376581 TGCATACATATGTGTTTTGGATGTGA 59.623 34.615 18.81 1.46 39.77 3.58
82 83 6.914215 GCATACATATGTGTTTTGGATGTGAG 59.086 38.462 18.81 0.00 39.77 3.51
83 84 5.314923 ACATATGTGTTTTGGATGTGAGC 57.685 39.130 7.78 0.00 34.01 4.26
84 85 4.766373 ACATATGTGTTTTGGATGTGAGCA 59.234 37.500 7.78 0.00 34.01 4.26
85 86 3.928727 ATGTGTTTTGGATGTGAGCAG 57.071 42.857 0.00 0.00 0.00 4.24
86 87 1.955778 TGTGTTTTGGATGTGAGCAGG 59.044 47.619 0.00 0.00 0.00 4.85
87 88 1.956477 GTGTTTTGGATGTGAGCAGGT 59.044 47.619 0.00 0.00 0.00 4.00
88 89 3.146066 GTGTTTTGGATGTGAGCAGGTA 58.854 45.455 0.00 0.00 0.00 3.08
89 90 3.758554 GTGTTTTGGATGTGAGCAGGTAT 59.241 43.478 0.00 0.00 0.00 2.73
90 91 3.758023 TGTTTTGGATGTGAGCAGGTATG 59.242 43.478 0.00 0.00 0.00 2.39
91 92 3.998913 TTTGGATGTGAGCAGGTATGA 57.001 42.857 0.00 0.00 0.00 2.15
92 93 2.988010 TGGATGTGAGCAGGTATGAC 57.012 50.000 0.00 0.00 0.00 3.06
93 94 2.470990 TGGATGTGAGCAGGTATGACT 58.529 47.619 0.00 0.00 0.00 3.41
94 95 3.642141 TGGATGTGAGCAGGTATGACTA 58.358 45.455 0.00 0.00 0.00 2.59
95 96 4.226384 TGGATGTGAGCAGGTATGACTAT 58.774 43.478 0.00 0.00 0.00 2.12
96 97 5.393866 TGGATGTGAGCAGGTATGACTATA 58.606 41.667 0.00 0.00 0.00 1.31
97 98 5.243954 TGGATGTGAGCAGGTATGACTATAC 59.756 44.000 0.00 0.00 38.74 1.47
98 99 5.478679 GGATGTGAGCAGGTATGACTATACT 59.521 44.000 0.00 0.00 39.30 2.12
99 100 6.659668 GGATGTGAGCAGGTATGACTATACTA 59.340 42.308 0.00 0.00 39.30 1.82
100 101 6.879276 TGTGAGCAGGTATGACTATACTAC 57.121 41.667 0.00 0.00 39.30 2.73
101 102 6.362248 TGTGAGCAGGTATGACTATACTACA 58.638 40.000 0.00 0.00 39.30 2.74
102 103 6.831868 TGTGAGCAGGTATGACTATACTACAA 59.168 38.462 0.00 0.00 39.30 2.41
103 104 7.140048 GTGAGCAGGTATGACTATACTACAAC 58.860 42.308 0.00 0.00 39.30 3.32
104 105 7.013464 GTGAGCAGGTATGACTATACTACAACT 59.987 40.741 0.00 0.00 39.30 3.16
105 106 7.560262 TGAGCAGGTATGACTATACTACAACTT 59.440 37.037 0.00 0.00 39.30 2.66
106 107 7.717568 AGCAGGTATGACTATACTACAACTTG 58.282 38.462 0.00 0.00 39.30 3.16
107 108 6.924060 GCAGGTATGACTATACTACAACTTGG 59.076 42.308 0.00 0.00 39.30 3.61
108 109 7.201884 GCAGGTATGACTATACTACAACTTGGA 60.202 40.741 0.00 0.00 39.30 3.53
109 110 8.692710 CAGGTATGACTATACTACAACTTGGAA 58.307 37.037 0.00 0.00 39.30 3.53
110 111 8.693625 AGGTATGACTATACTACAACTTGGAAC 58.306 37.037 0.00 0.00 39.30 3.62
111 112 8.693625 GGTATGACTATACTACAACTTGGAACT 58.306 37.037 0.00 0.00 39.30 3.01
115 116 9.841295 TGACTATACTACAACTTGGAACTTTTT 57.159 29.630 0.00 0.00 0.00 1.94
117 118 9.841295 ACTATACTACAACTTGGAACTTTTTCA 57.159 29.630 0.00 0.00 32.80 2.69
120 121 7.881775 ACTACAACTTGGAACTTTTTCATCT 57.118 32.000 0.00 0.00 32.80 2.90
121 122 8.293699 ACTACAACTTGGAACTTTTTCATCTT 57.706 30.769 0.00 0.00 32.80 2.40
122 123 8.190784 ACTACAACTTGGAACTTTTTCATCTTG 58.809 33.333 0.00 0.00 32.80 3.02
123 124 5.812127 ACAACTTGGAACTTTTTCATCTTGC 59.188 36.000 0.00 0.00 32.80 4.01
124 125 5.596836 ACTTGGAACTTTTTCATCTTGCA 57.403 34.783 0.00 0.00 32.80 4.08
125 126 5.976458 ACTTGGAACTTTTTCATCTTGCAA 58.024 33.333 0.00 0.00 32.80 4.08
126 127 6.585416 ACTTGGAACTTTTTCATCTTGCAAT 58.415 32.000 0.00 0.00 32.80 3.56
127 128 7.049754 ACTTGGAACTTTTTCATCTTGCAATT 58.950 30.769 0.00 0.00 32.80 2.32
128 129 6.847956 TGGAACTTTTTCATCTTGCAATTG 57.152 33.333 0.00 0.00 32.80 2.32
129 130 6.347696 TGGAACTTTTTCATCTTGCAATTGT 58.652 32.000 7.40 0.00 32.80 2.71
130 131 6.822676 TGGAACTTTTTCATCTTGCAATTGTT 59.177 30.769 7.40 0.00 32.80 2.83
131 132 7.336427 TGGAACTTTTTCATCTTGCAATTGTTT 59.664 29.630 7.40 0.00 32.80 2.83
132 133 8.825745 GGAACTTTTTCATCTTGCAATTGTTTA 58.174 29.630 7.40 0.00 32.80 2.01
134 135 9.986833 AACTTTTTCATCTTGCAATTGTTTAAC 57.013 25.926 7.40 0.00 0.00 2.01
135 136 9.382275 ACTTTTTCATCTTGCAATTGTTTAACT 57.618 25.926 7.40 0.00 0.00 2.24
136 137 9.853921 CTTTTTCATCTTGCAATTGTTTAACTC 57.146 29.630 7.40 0.00 0.00 3.01
137 138 9.598517 TTTTTCATCTTGCAATTGTTTAACTCT 57.401 25.926 7.40 0.00 0.00 3.24
139 140 9.897744 TTTCATCTTGCAATTGTTTAACTCTAG 57.102 29.630 7.40 0.00 0.00 2.43
140 141 8.846943 TCATCTTGCAATTGTTTAACTCTAGA 57.153 30.769 7.40 0.00 0.00 2.43
141 142 8.721478 TCATCTTGCAATTGTTTAACTCTAGAC 58.279 33.333 7.40 0.00 0.00 2.59
142 143 8.725148 CATCTTGCAATTGTTTAACTCTAGACT 58.275 33.333 7.40 0.00 0.00 3.24
143 144 8.677148 TCTTGCAATTGTTTAACTCTAGACTT 57.323 30.769 7.40 0.00 0.00 3.01
144 145 9.120538 TCTTGCAATTGTTTAACTCTAGACTTT 57.879 29.630 7.40 0.00 0.00 2.66
145 146 9.736023 CTTGCAATTGTTTAACTCTAGACTTTT 57.264 29.630 7.40 0.00 0.00 2.27
183 184 6.877611 AAAAAGTACATTAGGTCAGGTGTG 57.122 37.500 0.00 0.00 0.00 3.82
184 185 5.562298 AAAGTACATTAGGTCAGGTGTGT 57.438 39.130 0.00 0.00 0.00 3.72
185 186 6.675413 AAAGTACATTAGGTCAGGTGTGTA 57.325 37.500 0.00 0.00 0.00 2.90
186 187 6.675413 AAGTACATTAGGTCAGGTGTGTAA 57.325 37.500 0.00 0.00 0.00 2.41
187 188 6.034161 AGTACATTAGGTCAGGTGTGTAAC 57.966 41.667 0.00 0.00 37.35 2.50
199 200 2.949177 TGTGTAACACAGCCCTGATT 57.051 45.000 1.69 0.00 45.67 2.57
200 201 2.778299 TGTGTAACACAGCCCTGATTC 58.222 47.619 1.69 0.00 45.67 2.52
201 202 2.105649 TGTGTAACACAGCCCTGATTCA 59.894 45.455 1.69 0.00 45.67 2.57
202 203 2.744202 GTGTAACACAGCCCTGATTCAG 59.256 50.000 6.70 6.70 36.32 3.02
203 204 2.637382 TGTAACACAGCCCTGATTCAGA 59.363 45.455 15.36 0.00 32.44 3.27
204 205 2.486472 AACACAGCCCTGATTCAGAG 57.514 50.000 15.36 2.73 32.44 3.35
205 206 1.356124 ACACAGCCCTGATTCAGAGT 58.644 50.000 15.36 5.41 32.44 3.24
206 207 1.701847 ACACAGCCCTGATTCAGAGTT 59.298 47.619 15.36 0.00 32.44 3.01
207 208 2.107204 ACACAGCCCTGATTCAGAGTTT 59.893 45.455 15.36 0.00 32.44 2.66
208 209 3.327757 ACACAGCCCTGATTCAGAGTTTA 59.672 43.478 15.36 0.00 32.44 2.01
209 210 4.202461 ACACAGCCCTGATTCAGAGTTTAA 60.202 41.667 15.36 0.00 32.44 1.52
210 211 4.154918 CACAGCCCTGATTCAGAGTTTAAC 59.845 45.833 15.36 0.00 32.44 2.01
211 212 3.372206 CAGCCCTGATTCAGAGTTTAACG 59.628 47.826 15.36 0.00 32.44 3.18
212 213 3.008049 AGCCCTGATTCAGAGTTTAACGT 59.992 43.478 15.36 0.00 32.44 3.99
213 214 3.371285 GCCCTGATTCAGAGTTTAACGTC 59.629 47.826 15.36 0.00 32.44 4.34
214 215 4.822026 CCCTGATTCAGAGTTTAACGTCT 58.178 43.478 15.36 0.00 32.44 4.18
215 216 4.865365 CCCTGATTCAGAGTTTAACGTCTC 59.135 45.833 15.36 0.00 32.44 3.36
216 217 4.865365 CCTGATTCAGAGTTTAACGTCTCC 59.135 45.833 15.36 0.00 32.44 3.71
217 218 5.336849 CCTGATTCAGAGTTTAACGTCTCCT 60.337 44.000 15.36 0.00 32.44 3.69
218 219 5.710984 TGATTCAGAGTTTAACGTCTCCTC 58.289 41.667 0.00 0.00 0.00 3.71
219 220 4.516365 TTCAGAGTTTAACGTCTCCTCC 57.484 45.455 0.00 0.00 0.00 4.30
220 221 2.824341 TCAGAGTTTAACGTCTCCTCCC 59.176 50.000 0.00 0.00 0.00 4.30
221 222 2.561419 CAGAGTTTAACGTCTCCTCCCA 59.439 50.000 0.00 0.00 0.00 4.37
222 223 2.561858 AGAGTTTAACGTCTCCTCCCAC 59.438 50.000 0.00 0.00 0.00 4.61
223 224 2.561858 GAGTTTAACGTCTCCTCCCACT 59.438 50.000 0.00 0.00 0.00 4.00
224 225 3.760684 GAGTTTAACGTCTCCTCCCACTA 59.239 47.826 0.00 0.00 0.00 2.74
225 226 4.154942 AGTTTAACGTCTCCTCCCACTAA 58.845 43.478 0.00 0.00 0.00 2.24
226 227 4.590222 AGTTTAACGTCTCCTCCCACTAAA 59.410 41.667 0.00 0.00 0.00 1.85
227 228 5.070847 AGTTTAACGTCTCCTCCCACTAAAA 59.929 40.000 0.00 0.00 0.00 1.52
228 229 3.679824 AACGTCTCCTCCCACTAAAAG 57.320 47.619 0.00 0.00 0.00 2.27
229 230 1.275573 ACGTCTCCTCCCACTAAAAGC 59.724 52.381 0.00 0.00 0.00 3.51
230 231 1.275291 CGTCTCCTCCCACTAAAAGCA 59.725 52.381 0.00 0.00 0.00 3.91
231 232 2.093447 CGTCTCCTCCCACTAAAAGCAT 60.093 50.000 0.00 0.00 0.00 3.79
232 233 3.132289 CGTCTCCTCCCACTAAAAGCATA 59.868 47.826 0.00 0.00 0.00 3.14
233 234 4.202264 CGTCTCCTCCCACTAAAAGCATAT 60.202 45.833 0.00 0.00 0.00 1.78
234 235 5.301555 GTCTCCTCCCACTAAAAGCATATC 58.698 45.833 0.00 0.00 0.00 1.63
235 236 4.039245 TCTCCTCCCACTAAAAGCATATCG 59.961 45.833 0.00 0.00 0.00 2.92
236 237 2.808543 CCTCCCACTAAAAGCATATCGC 59.191 50.000 0.00 0.00 42.91 4.58
237 238 2.808543 CTCCCACTAAAAGCATATCGCC 59.191 50.000 0.00 0.00 44.04 5.54
238 239 2.171659 TCCCACTAAAAGCATATCGCCA 59.828 45.455 0.00 0.00 44.04 5.69
239 240 2.549754 CCCACTAAAAGCATATCGCCAG 59.450 50.000 0.00 0.00 44.04 4.85
240 241 3.466836 CCACTAAAAGCATATCGCCAGA 58.533 45.455 0.00 0.00 44.04 3.86
241 242 3.876914 CCACTAAAAGCATATCGCCAGAA 59.123 43.478 0.00 0.00 44.04 3.02
242 243 4.516698 CCACTAAAAGCATATCGCCAGAAT 59.483 41.667 0.00 0.00 44.04 2.40
243 244 5.009010 CCACTAAAAGCATATCGCCAGAATT 59.991 40.000 0.00 0.00 44.04 2.17
244 245 6.460123 CCACTAAAAGCATATCGCCAGAATTT 60.460 38.462 0.00 0.00 44.04 1.82
245 246 6.634436 CACTAAAAGCATATCGCCAGAATTTC 59.366 38.462 0.00 0.00 44.04 2.17
246 247 5.841957 AAAAGCATATCGCCAGAATTTCT 57.158 34.783 0.00 0.00 44.04 2.52
247 248 4.825546 AAGCATATCGCCAGAATTTCTG 57.174 40.909 17.78 17.78 43.91 3.02
248 249 4.077300 AGCATATCGCCAGAATTTCTGA 57.923 40.909 24.71 8.16 44.01 3.27
249 250 4.454678 AGCATATCGCCAGAATTTCTGAA 58.545 39.130 24.71 11.89 44.01 3.02
250 251 4.883585 AGCATATCGCCAGAATTTCTGAAA 59.116 37.500 24.71 5.15 44.01 2.69
251 252 5.533903 AGCATATCGCCAGAATTTCTGAAAT 59.466 36.000 24.71 16.62 44.01 2.17
252 253 6.712095 AGCATATCGCCAGAATTTCTGAAATA 59.288 34.615 24.71 17.88 44.01 1.40
253 254 7.229306 AGCATATCGCCAGAATTTCTGAAATAA 59.771 33.333 24.71 9.74 44.01 1.40
269 270 9.734620 TTCTGAAATAAATCCAAGATAAATGCG 57.265 29.630 0.00 0.00 0.00 4.73
270 271 9.119418 TCTGAAATAAATCCAAGATAAATGCGA 57.881 29.630 0.00 0.00 0.00 5.10
271 272 9.390795 CTGAAATAAATCCAAGATAAATGCGAG 57.609 33.333 0.00 0.00 0.00 5.03
272 273 7.862372 TGAAATAAATCCAAGATAAATGCGAGC 59.138 33.333 0.00 0.00 0.00 5.03
273 274 6.882610 ATAAATCCAAGATAAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
274 275 4.558538 AATCCAAGATAAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
275 276 2.288666 TCCAAGATAAATGCGAGCACC 58.711 47.619 0.00 0.00 0.00 5.01
276 277 2.016318 CCAAGATAAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
277 278 2.032550 CCAAGATAAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
278 279 1.959042 AGATAAATGCGAGCACCAGG 58.041 50.000 0.00 0.00 0.00 4.45
279 280 1.486310 AGATAAATGCGAGCACCAGGA 59.514 47.619 0.00 0.00 0.00 3.86
280 281 2.105477 AGATAAATGCGAGCACCAGGAT 59.895 45.455 0.00 0.00 0.00 3.24
281 282 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
282 283 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
283 284 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
284 285 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
285 286 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
286 287 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
287 288 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
288 289 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
289 290 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
294 295 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
304 305 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
305 306 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
327 328 1.580059 GGGTCCACCTAACCATCTCA 58.420 55.000 0.00 0.00 38.62 3.27
328 329 1.913419 GGGTCCACCTAACCATCTCAA 59.087 52.381 0.00 0.00 38.62 3.02
329 330 2.355818 GGGTCCACCTAACCATCTCAAC 60.356 54.545 0.00 0.00 38.62 3.18
330 331 2.355818 GGTCCACCTAACCATCTCAACC 60.356 54.545 0.00 0.00 36.75 3.77
331 332 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
332 333 2.571653 TCCACCTAACCATCTCAACCAG 59.428 50.000 0.00 0.00 0.00 4.00
333 334 2.571653 CCACCTAACCATCTCAACCAGA 59.428 50.000 0.00 0.00 34.78 3.86
334 335 3.369892 CCACCTAACCATCTCAACCAGAG 60.370 52.174 0.00 0.00 46.14 3.35
335 336 2.840651 ACCTAACCATCTCAACCAGAGG 59.159 50.000 0.00 0.00 44.81 3.69
336 337 2.840651 CCTAACCATCTCAACCAGAGGT 59.159 50.000 0.00 0.00 44.81 3.85
346 347 2.359975 CCAGAGGTTGGTTCGCCC 60.360 66.667 0.00 0.00 42.41 6.13
347 348 2.359975 CAGAGGTTGGTTCGCCCC 60.360 66.667 0.00 0.00 36.08 5.80
348 349 2.852075 AGAGGTTGGTTCGCCCCA 60.852 61.111 0.00 0.00 36.08 4.96
349 350 2.114411 GAGGTTGGTTCGCCCCAA 59.886 61.111 1.93 1.93 42.16 4.12
350 351 1.529713 GAGGTTGGTTCGCCCCAAA 60.530 57.895 7.13 0.00 45.72 3.28
351 352 0.898326 GAGGTTGGTTCGCCCCAAAT 60.898 55.000 7.13 0.63 45.72 2.32
352 353 0.471022 AGGTTGGTTCGCCCCAAATT 60.471 50.000 7.13 0.00 45.72 1.82
353 354 0.394938 GGTTGGTTCGCCCCAAATTT 59.605 50.000 7.13 0.00 45.72 1.82
354 355 1.619332 GGTTGGTTCGCCCCAAATTTA 59.381 47.619 7.13 0.00 45.72 1.40
355 356 2.353307 GGTTGGTTCGCCCCAAATTTAG 60.353 50.000 7.13 0.00 45.72 1.85
356 357 2.559231 GTTGGTTCGCCCCAAATTTAGA 59.441 45.455 7.13 0.00 45.72 2.10
357 358 2.442413 TGGTTCGCCCCAAATTTAGAG 58.558 47.619 0.00 0.00 36.08 2.43
358 359 2.224917 TGGTTCGCCCCAAATTTAGAGT 60.225 45.455 0.00 0.00 36.08 3.24
359 360 2.823747 GGTTCGCCCCAAATTTAGAGTT 59.176 45.455 0.00 0.00 0.00 3.01
360 361 3.257375 GGTTCGCCCCAAATTTAGAGTTT 59.743 43.478 0.00 0.00 0.00 2.66
361 362 4.482386 GTTCGCCCCAAATTTAGAGTTTC 58.518 43.478 0.00 0.00 0.00 2.78
362 363 3.757270 TCGCCCCAAATTTAGAGTTTCA 58.243 40.909 0.00 0.00 0.00 2.69
363 364 3.504520 TCGCCCCAAATTTAGAGTTTCAC 59.495 43.478 0.00 0.00 0.00 3.18
364 365 3.506067 CGCCCCAAATTTAGAGTTTCACT 59.494 43.478 0.00 0.00 0.00 3.41
365 366 4.022329 CGCCCCAAATTTAGAGTTTCACTT 60.022 41.667 0.00 0.00 0.00 3.16
366 367 5.230182 GCCCCAAATTTAGAGTTTCACTTG 58.770 41.667 0.00 0.00 0.00 3.16
367 368 5.783111 CCCCAAATTTAGAGTTTCACTTGG 58.217 41.667 0.00 0.00 33.39 3.61
368 369 5.304357 CCCCAAATTTAGAGTTTCACTTGGT 59.696 40.000 0.00 0.00 31.99 3.67
369 370 6.183360 CCCCAAATTTAGAGTTTCACTTGGTT 60.183 38.462 0.00 0.00 31.99 3.67
370 371 7.272244 CCCAAATTTAGAGTTTCACTTGGTTT 58.728 34.615 0.00 0.00 31.99 3.27
371 372 8.417884 CCCAAATTTAGAGTTTCACTTGGTTTA 58.582 33.333 0.00 0.00 31.99 2.01
372 373 9.981114 CCAAATTTAGAGTTTCACTTGGTTTAT 57.019 29.630 0.00 0.00 0.00 1.40
380 381 8.126700 AGAGTTTCACTTGGTTTATTAACAACG 58.873 33.333 0.00 0.00 35.92 4.10
381 382 7.987649 AGTTTCACTTGGTTTATTAACAACGA 58.012 30.769 0.00 0.00 35.92 3.85
382 383 8.460428 AGTTTCACTTGGTTTATTAACAACGAA 58.540 29.630 0.00 0.00 35.92 3.85
383 384 9.240159 GTTTCACTTGGTTTATTAACAACGAAT 57.760 29.630 0.00 0.00 35.92 3.34
384 385 9.453325 TTTCACTTGGTTTATTAACAACGAATC 57.547 29.630 0.00 0.00 35.92 2.52
385 386 8.385898 TCACTTGGTTTATTAACAACGAATCT 57.614 30.769 0.00 0.00 35.92 2.40
386 387 9.491675 TCACTTGGTTTATTAACAACGAATCTA 57.508 29.630 0.00 0.00 35.92 1.98
395 396 6.621737 TTAACAACGAATCTAACTAGTGCG 57.378 37.500 0.00 0.00 0.00 5.34
396 397 4.430137 ACAACGAATCTAACTAGTGCGA 57.570 40.909 0.00 0.00 0.00 5.10
397 398 4.164294 ACAACGAATCTAACTAGTGCGAC 58.836 43.478 0.00 0.00 0.00 5.19
398 399 3.417690 ACGAATCTAACTAGTGCGACC 57.582 47.619 0.00 0.00 0.00 4.79
399 400 3.015327 ACGAATCTAACTAGTGCGACCT 58.985 45.455 0.00 0.00 0.00 3.85
400 401 4.194640 ACGAATCTAACTAGTGCGACCTA 58.805 43.478 0.00 0.00 0.00 3.08
401 402 4.034975 ACGAATCTAACTAGTGCGACCTAC 59.965 45.833 0.00 0.00 0.00 3.18
402 403 4.034858 CGAATCTAACTAGTGCGACCTACA 59.965 45.833 0.00 0.00 0.00 2.74
403 404 4.897025 ATCTAACTAGTGCGACCTACAC 57.103 45.455 0.00 0.00 38.35 2.90
404 405 3.678289 TCTAACTAGTGCGACCTACACA 58.322 45.455 0.00 0.00 40.59 3.72
405 406 4.267536 TCTAACTAGTGCGACCTACACAT 58.732 43.478 0.00 0.00 40.59 3.21
406 407 3.955650 AACTAGTGCGACCTACACATT 57.044 42.857 0.00 0.00 40.59 2.71
407 408 5.882000 TCTAACTAGTGCGACCTACACATTA 59.118 40.000 0.00 0.00 40.59 1.90
408 409 4.634184 ACTAGTGCGACCTACACATTAG 57.366 45.455 0.00 0.00 40.59 1.73
409 410 2.961526 AGTGCGACCTACACATTAGG 57.038 50.000 0.00 0.00 40.59 2.69
410 411 1.480954 AGTGCGACCTACACATTAGGG 59.519 52.381 2.48 0.00 40.59 3.53
411 412 0.828022 TGCGACCTACACATTAGGGG 59.172 55.000 2.48 0.00 39.00 4.79
412 413 0.532196 GCGACCTACACATTAGGGGC 60.532 60.000 2.48 1.89 39.00 5.80
413 414 1.120530 CGACCTACACATTAGGGGCT 58.879 55.000 2.48 0.00 39.00 5.19
414 415 1.202533 CGACCTACACATTAGGGGCTG 60.203 57.143 2.48 0.00 39.00 4.85
415 416 2.116238 GACCTACACATTAGGGGCTGA 58.884 52.381 2.48 0.00 39.00 4.26
416 417 2.103263 GACCTACACATTAGGGGCTGAG 59.897 54.545 2.48 0.00 39.00 3.35
417 418 2.119495 CCTACACATTAGGGGCTGAGT 58.881 52.381 0.00 0.00 0.00 3.41
418 419 2.505819 CCTACACATTAGGGGCTGAGTT 59.494 50.000 0.00 0.00 0.00 3.01
419 420 2.496899 ACACATTAGGGGCTGAGTTG 57.503 50.000 0.00 0.00 0.00 3.16
420 421 1.004745 ACACATTAGGGGCTGAGTTGG 59.995 52.381 0.00 0.00 0.00 3.77
421 422 0.034089 ACATTAGGGGCTGAGTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
422 423 0.034186 CATTAGGGGCTGAGTTGGCA 60.034 55.000 0.00 0.00 0.00 4.92
423 424 0.704076 ATTAGGGGCTGAGTTGGCAA 59.296 50.000 0.00 0.00 0.00 4.52
424 425 0.480690 TTAGGGGCTGAGTTGGCAAA 59.519 50.000 0.00 0.00 0.00 3.68
425 426 0.480690 TAGGGGCTGAGTTGGCAAAA 59.519 50.000 0.00 0.00 0.00 2.44
426 427 0.398381 AGGGGCTGAGTTGGCAAAAA 60.398 50.000 0.00 0.00 0.00 1.94
427 428 0.686789 GGGGCTGAGTTGGCAAAAAT 59.313 50.000 0.00 0.00 0.00 1.82
428 429 1.899142 GGGGCTGAGTTGGCAAAAATA 59.101 47.619 0.00 0.00 0.00 1.40
429 430 2.501316 GGGGCTGAGTTGGCAAAAATAT 59.499 45.455 0.00 0.00 0.00 1.28
430 431 3.430790 GGGGCTGAGTTGGCAAAAATATC 60.431 47.826 0.00 0.00 0.00 1.63
431 432 3.438360 GGCTGAGTTGGCAAAAATATCG 58.562 45.455 0.00 0.00 0.00 2.92
432 433 2.854185 GCTGAGTTGGCAAAAATATCGC 59.146 45.455 0.00 0.00 0.00 4.58
433 434 3.438360 CTGAGTTGGCAAAAATATCGCC 58.562 45.455 0.00 0.00 46.43 5.54
437 438 2.577225 GGCAAAAATATCGCCACGC 58.423 52.632 0.00 0.00 45.52 5.34
438 439 0.179150 GGCAAAAATATCGCCACGCA 60.179 50.000 0.00 0.00 45.52 5.24
439 440 1.623359 GCAAAAATATCGCCACGCAA 58.377 45.000 0.00 0.00 0.00 4.85
440 441 3.606571 GGCAAAAATATCGCCACGCAAG 61.607 50.000 0.00 0.00 45.52 4.01
441 442 1.583404 CAAAAATATCGCCACGCAAGC 59.417 47.619 0.00 0.00 45.62 4.01
442 443 0.808125 AAAATATCGCCACGCAAGCA 59.192 45.000 0.00 0.00 45.62 3.91
443 444 1.024271 AAATATCGCCACGCAAGCAT 58.976 45.000 0.00 0.00 45.62 3.79
444 445 0.308684 AATATCGCCACGCAAGCATG 59.691 50.000 0.00 0.00 45.62 4.06
458 459 4.346734 CAAGCATGCTGACTCGTTTATT 57.653 40.909 23.48 0.00 0.00 1.40
459 460 4.337763 CAAGCATGCTGACTCGTTTATTC 58.662 43.478 23.48 0.00 0.00 1.75
460 461 3.866651 AGCATGCTGACTCGTTTATTCT 58.133 40.909 21.98 0.00 0.00 2.40
461 462 4.256920 AGCATGCTGACTCGTTTATTCTT 58.743 39.130 21.98 0.00 0.00 2.52
462 463 4.331168 AGCATGCTGACTCGTTTATTCTTC 59.669 41.667 21.98 0.00 0.00 2.87
463 464 4.494855 GCATGCTGACTCGTTTATTCTTCC 60.495 45.833 11.37 0.00 0.00 3.46
464 465 4.537135 TGCTGACTCGTTTATTCTTCCT 57.463 40.909 0.00 0.00 0.00 3.36
465 466 4.894784 TGCTGACTCGTTTATTCTTCCTT 58.105 39.130 0.00 0.00 0.00 3.36
466 467 5.305585 TGCTGACTCGTTTATTCTTCCTTT 58.694 37.500 0.00 0.00 0.00 3.11
467 468 5.408604 TGCTGACTCGTTTATTCTTCCTTTC 59.591 40.000 0.00 0.00 0.00 2.62
468 469 5.163844 GCTGACTCGTTTATTCTTCCTTTCC 60.164 44.000 0.00 0.00 0.00 3.13
469 470 5.243207 TGACTCGTTTATTCTTCCTTTCCC 58.757 41.667 0.00 0.00 0.00 3.97
470 471 5.012768 TGACTCGTTTATTCTTCCTTTCCCT 59.987 40.000 0.00 0.00 0.00 4.20
471 472 5.489249 ACTCGTTTATTCTTCCTTTCCCTC 58.511 41.667 0.00 0.00 0.00 4.30
472 473 5.248705 ACTCGTTTATTCTTCCTTTCCCTCT 59.751 40.000 0.00 0.00 0.00 3.69
473 474 6.123045 TCGTTTATTCTTCCTTTCCCTCTT 57.877 37.500 0.00 0.00 0.00 2.85
474 475 6.540083 TCGTTTATTCTTCCTTTCCCTCTTT 58.460 36.000 0.00 0.00 0.00 2.52
475 476 6.430000 TCGTTTATTCTTCCTTTCCCTCTTTG 59.570 38.462 0.00 0.00 0.00 2.77
476 477 6.390721 GTTTATTCTTCCTTTCCCTCTTTGC 58.609 40.000 0.00 0.00 0.00 3.68
477 478 3.593442 TTCTTCCTTTCCCTCTTTGCA 57.407 42.857 0.00 0.00 0.00 4.08
478 479 2.863809 TCTTCCTTTCCCTCTTTGCAC 58.136 47.619 0.00 0.00 0.00 4.57
479 480 1.537202 CTTCCTTTCCCTCTTTGCACG 59.463 52.381 0.00 0.00 0.00 5.34
480 481 0.472471 TCCTTTCCCTCTTTGCACGT 59.528 50.000 0.00 0.00 0.00 4.49
481 482 0.593128 CCTTTCCCTCTTTGCACGTG 59.407 55.000 12.28 12.28 0.00 4.49
482 483 0.040067 CTTTCCCTCTTTGCACGTGC 60.040 55.000 33.11 33.11 42.50 5.34
483 484 1.452145 TTTCCCTCTTTGCACGTGCC 61.452 55.000 35.72 19.24 41.18 5.01
484 485 2.281761 CCCTCTTTGCACGTGCCT 60.282 61.111 35.72 0.00 41.18 4.75
485 486 1.898574 CCCTCTTTGCACGTGCCTT 60.899 57.895 35.72 0.00 41.18 4.35
486 487 1.283793 CCTCTTTGCACGTGCCTTG 59.716 57.895 35.72 24.14 41.18 3.61
487 488 1.447317 CCTCTTTGCACGTGCCTTGT 61.447 55.000 35.72 0.00 41.18 3.16
488 489 0.381801 CTCTTTGCACGTGCCTTGTT 59.618 50.000 35.72 0.00 41.18 2.83
489 490 0.380378 TCTTTGCACGTGCCTTGTTC 59.620 50.000 35.72 9.11 41.18 3.18
490 491 0.100325 CTTTGCACGTGCCTTGTTCA 59.900 50.000 35.72 14.34 41.18 3.18
491 492 0.528017 TTTGCACGTGCCTTGTTCAA 59.472 45.000 35.72 19.53 41.18 2.69
492 493 0.743688 TTGCACGTGCCTTGTTCAAT 59.256 45.000 35.72 0.00 41.18 2.57
493 494 0.030504 TGCACGTGCCTTGTTCAATG 59.969 50.000 35.72 0.00 41.18 2.82
494 495 1.277495 GCACGTGCCTTGTTCAATGC 61.277 55.000 30.12 0.00 34.31 3.56
495 496 0.311790 CACGTGCCTTGTTCAATGCT 59.688 50.000 0.82 0.00 0.00 3.79
496 497 1.032014 ACGTGCCTTGTTCAATGCTT 58.968 45.000 12.34 0.00 0.00 3.91
497 498 1.408702 ACGTGCCTTGTTCAATGCTTT 59.591 42.857 12.34 0.00 0.00 3.51
498 499 2.159114 ACGTGCCTTGTTCAATGCTTTT 60.159 40.909 12.34 0.00 0.00 2.27
499 500 2.865551 CGTGCCTTGTTCAATGCTTTTT 59.134 40.909 12.34 0.00 0.00 1.94
500 501 3.060339 CGTGCCTTGTTCAATGCTTTTTC 60.060 43.478 12.34 1.22 0.00 2.29
501 502 4.122046 GTGCCTTGTTCAATGCTTTTTCT 58.878 39.130 12.34 0.00 0.00 2.52
502 503 4.209911 GTGCCTTGTTCAATGCTTTTTCTC 59.790 41.667 12.34 0.00 0.00 2.87
503 504 3.742882 GCCTTGTTCAATGCTTTTTCTCC 59.257 43.478 5.76 0.00 0.00 3.71
504 505 4.740334 GCCTTGTTCAATGCTTTTTCTCCA 60.740 41.667 5.76 0.00 0.00 3.86
505 506 5.358922 CCTTGTTCAATGCTTTTTCTCCAA 58.641 37.500 0.00 0.00 0.00 3.53
506 507 5.816777 CCTTGTTCAATGCTTTTTCTCCAAA 59.183 36.000 0.00 0.00 0.00 3.28
507 508 6.018507 CCTTGTTCAATGCTTTTTCTCCAAAG 60.019 38.462 0.00 0.00 36.91 2.77
518 519 4.481195 TCCAAAGCAGTGGAGCAC 57.519 55.556 4.34 0.00 42.97 4.40
519 520 1.228245 TCCAAAGCAGTGGAGCACC 60.228 57.895 4.34 0.00 42.97 5.01
520 521 1.228367 CCAAAGCAGTGGAGCACCT 60.228 57.895 0.71 0.00 41.65 4.00
521 522 1.521450 CCAAAGCAGTGGAGCACCTG 61.521 60.000 0.71 0.00 41.65 4.00
522 523 1.900498 AAAGCAGTGGAGCACCTGC 60.900 57.895 6.33 6.33 38.12 4.85
523 524 2.629424 AAAGCAGTGGAGCACCTGCA 62.629 55.000 15.11 0.00 45.16 4.41
524 525 2.360852 GCAGTGGAGCACCTGCAT 60.361 61.111 9.13 0.00 45.16 3.96
525 526 2.697761 GCAGTGGAGCACCTGCATG 61.698 63.158 9.13 0.00 45.16 4.06
526 527 1.002990 CAGTGGAGCACCTGCATGA 60.003 57.895 0.71 0.00 45.16 3.07
527 528 1.025113 CAGTGGAGCACCTGCATGAG 61.025 60.000 0.71 0.00 45.16 2.90
528 529 2.045634 TGGAGCACCTGCATGAGC 60.046 61.111 0.71 3.29 45.16 4.26
529 530 2.271497 GGAGCACCTGCATGAGCT 59.729 61.111 13.27 13.27 45.16 4.09
530 531 3.810812 GAGCACCTGCATGAGCTC 58.189 61.111 21.36 21.36 45.50 4.09
531 532 1.818785 GAGCACCTGCATGAGCTCC 60.819 63.158 23.99 10.98 45.79 4.70
532 533 2.254737 GAGCACCTGCATGAGCTCCT 62.255 60.000 23.99 0.00 45.79 3.69
533 534 1.818785 GCACCTGCATGAGCTCCTC 60.819 63.158 12.15 0.40 42.74 3.71
534 535 1.153208 CACCTGCATGAGCTCCTCC 60.153 63.158 12.15 0.00 42.74 4.30
535 536 1.306825 ACCTGCATGAGCTCCTCCT 60.307 57.895 12.15 0.00 42.74 3.69
536 537 1.336632 ACCTGCATGAGCTCCTCCTC 61.337 60.000 12.15 0.00 42.74 3.71
537 538 1.049855 CCTGCATGAGCTCCTCCTCT 61.050 60.000 12.15 0.00 42.74 3.69
538 539 0.390124 CTGCATGAGCTCCTCCTCTC 59.610 60.000 12.15 0.00 42.74 3.20
539 540 1.047596 TGCATGAGCTCCTCCTCTCC 61.048 60.000 12.15 0.00 42.74 3.71
540 541 1.757423 GCATGAGCTCCTCCTCTCCC 61.757 65.000 12.15 0.00 37.91 4.30
541 542 0.105555 CATGAGCTCCTCCTCTCCCT 60.106 60.000 12.15 0.00 33.02 4.20
542 543 0.641601 ATGAGCTCCTCCTCTCCCTT 59.358 55.000 12.15 0.00 33.02 3.95
543 544 0.032615 TGAGCTCCTCCTCTCCCTTC 60.033 60.000 12.15 0.00 33.02 3.46
544 545 0.261696 GAGCTCCTCCTCTCCCTTCT 59.738 60.000 0.87 0.00 0.00 2.85
545 546 0.715987 AGCTCCTCCTCTCCCTTCTT 59.284 55.000 0.00 0.00 0.00 2.52
546 547 0.829990 GCTCCTCCTCTCCCTTCTTG 59.170 60.000 0.00 0.00 0.00 3.02
547 548 0.829990 CTCCTCCTCTCCCTTCTTGC 59.170 60.000 0.00 0.00 0.00 4.01
548 549 0.618968 TCCTCCTCTCCCTTCTTGCC 60.619 60.000 0.00 0.00 0.00 4.52
549 550 1.631071 CCTCCTCTCCCTTCTTGCCC 61.631 65.000 0.00 0.00 0.00 5.36
550 551 1.965754 CTCCTCTCCCTTCTTGCCCG 61.966 65.000 0.00 0.00 0.00 6.13
551 552 2.294078 CCTCTCCCTTCTTGCCCGT 61.294 63.158 0.00 0.00 0.00 5.28
552 553 1.219393 CTCTCCCTTCTTGCCCGTC 59.781 63.158 0.00 0.00 0.00 4.79
553 554 2.125512 CTCCCTTCTTGCCCGTCG 60.126 66.667 0.00 0.00 0.00 5.12
554 555 3.665675 CTCCCTTCTTGCCCGTCGG 62.666 68.421 3.60 3.60 0.00 4.79
564 565 4.636435 CCCGTCGGGCAACTTGGT 62.636 66.667 19.48 0.00 35.35 3.67
565 566 2.593436 CCGTCGGGCAACTTGGTT 60.593 61.111 2.34 0.00 0.00 3.67
566 567 2.190841 CCGTCGGGCAACTTGGTTT 61.191 57.895 2.34 0.00 0.00 3.27
567 568 1.730451 CCGTCGGGCAACTTGGTTTT 61.730 55.000 2.34 0.00 0.00 2.43
568 569 0.945813 CGTCGGGCAACTTGGTTTTA 59.054 50.000 0.00 0.00 0.00 1.52
569 570 1.334243 CGTCGGGCAACTTGGTTTTAA 59.666 47.619 0.00 0.00 0.00 1.52
570 571 2.223525 CGTCGGGCAACTTGGTTTTAAA 60.224 45.455 0.00 0.00 0.00 1.52
571 572 3.734293 CGTCGGGCAACTTGGTTTTAAAA 60.734 43.478 0.00 0.00 0.00 1.52
572 573 4.373527 GTCGGGCAACTTGGTTTTAAAAT 58.626 39.130 3.52 0.00 0.00 1.82
573 574 4.210328 GTCGGGCAACTTGGTTTTAAAATG 59.790 41.667 3.52 0.00 0.00 2.32
574 575 4.123506 CGGGCAACTTGGTTTTAAAATGT 58.876 39.130 3.52 0.00 0.00 2.71
575 576 4.572795 CGGGCAACTTGGTTTTAAAATGTT 59.427 37.500 3.52 5.14 0.00 2.71
576 577 5.503194 CGGGCAACTTGGTTTTAAAATGTTG 60.503 40.000 21.25 21.25 37.11 3.33
581 582 8.325367 CAACTTGGTTTTAAAATGTTGCAATG 57.675 30.769 0.59 5.38 0.00 2.82
582 583 7.025485 ACTTGGTTTTAAAATGTTGCAATGG 57.975 32.000 0.59 0.00 0.00 3.16
583 584 6.601217 ACTTGGTTTTAAAATGTTGCAATGGT 59.399 30.769 0.59 0.00 0.00 3.55
584 585 6.610741 TGGTTTTAAAATGTTGCAATGGTC 57.389 33.333 0.59 0.00 0.00 4.02
585 586 6.115446 TGGTTTTAAAATGTTGCAATGGTCA 58.885 32.000 0.59 0.00 0.00 4.02
586 587 6.037610 TGGTTTTAAAATGTTGCAATGGTCAC 59.962 34.615 0.59 0.00 0.00 3.67
587 588 6.426327 GTTTTAAAATGTTGCAATGGTCACC 58.574 36.000 0.59 0.00 0.00 4.02
588 589 2.837532 AAATGTTGCAATGGTCACCC 57.162 45.000 0.59 0.00 0.00 4.61
589 590 0.975887 AATGTTGCAATGGTCACCCC 59.024 50.000 0.59 0.00 0.00 4.95
590 591 0.904394 ATGTTGCAATGGTCACCCCC 60.904 55.000 0.59 0.00 0.00 5.40
606 607 3.009115 CCCACTCCCGGTGTCCAT 61.009 66.667 0.00 0.00 43.94 3.41
607 608 2.268920 CCACTCCCGGTGTCCATG 59.731 66.667 0.00 0.00 43.94 3.66
608 609 2.268920 CACTCCCGGTGTCCATGG 59.731 66.667 4.97 4.97 40.79 3.66
609 610 2.203938 ACTCCCGGTGTCCATGGT 60.204 61.111 12.58 0.00 0.00 3.55
610 611 2.268920 CTCCCGGTGTCCATGGTG 59.731 66.667 12.58 0.00 0.00 4.17
611 612 3.326578 TCCCGGTGTCCATGGTGG 61.327 66.667 12.58 7.15 39.43 4.61
612 613 3.326578 CCCGGTGTCCATGGTGGA 61.327 66.667 12.58 0.00 45.98 4.02
1320 1381 1.002624 CAGAGGGCGGGCAAGTTTA 60.003 57.895 3.27 0.00 0.00 2.01
1434 1495 7.446931 TGAATTTCTGCTATGTAGTGGAAACAA 59.553 33.333 0.00 0.00 46.06 2.83
1788 1899 1.622811 GAGGCTCATGGGATAGAGGTG 59.377 57.143 10.25 0.00 32.54 4.00
1934 2045 4.643784 GGCAATCAATGAACTGAAGGAGAT 59.356 41.667 0.54 0.00 0.00 2.75
1979 2090 3.930848 GCAAAGATTGAGCTTCAAATGGG 59.069 43.478 0.00 0.00 40.12 4.00
2123 2234 4.298103 AGAAGCTGGAGAATGTCATTGT 57.702 40.909 1.88 0.00 0.00 2.71
2270 2387 3.073503 TGGCCTAGGAATGATCAATCTGG 59.926 47.826 14.75 10.91 0.00 3.86
2551 2702 6.484643 TCAGACAAATTCAGAGAAGTTTGGAG 59.515 38.462 13.70 7.47 36.23 3.86
2562 2714 6.378564 CAGAGAAGTTTGGAGGACATCTAGTA 59.621 42.308 0.00 0.00 0.00 1.82
2885 3084 4.814294 GGACGTCGGCGAGCCAAT 62.814 66.667 20.03 0.00 42.00 3.16
2920 3119 1.137872 GATGATCTGCAGGTCCTCGTT 59.862 52.381 24.06 3.99 0.00 3.85
3079 3281 0.995803 TTACCTGGGGTTGCATAGCA 59.004 50.000 0.00 0.00 37.09 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.052455 TCTTACCTTGCATCGCTCAAA 57.948 42.857 0.00 0.00 0.00 2.69
3 4 2.760634 TTCTTACCTTGCATCGCTCA 57.239 45.000 0.00 0.00 0.00 4.26
5 6 3.878778 AGATTTCTTACCTTGCATCGCT 58.121 40.909 0.00 0.00 0.00 4.93
7 8 5.116180 TGGTAGATTTCTTACCTTGCATCG 58.884 41.667 0.00 0.00 35.04 3.84
8 9 6.599638 AGTTGGTAGATTTCTTACCTTGCATC 59.400 38.462 0.00 0.00 35.04 3.91
9 10 6.485171 AGTTGGTAGATTTCTTACCTTGCAT 58.515 36.000 0.00 0.00 35.04 3.96
10 11 5.876357 AGTTGGTAGATTTCTTACCTTGCA 58.124 37.500 3.40 0.00 35.04 4.08
11 12 6.819397 AAGTTGGTAGATTTCTTACCTTGC 57.181 37.500 3.40 0.00 35.04 4.01
24 25 9.569122 ACTGAAAGCTAATAAAAAGTTGGTAGA 57.431 29.630 0.00 0.00 37.60 2.59
38 39 9.784531 ATGTATGCACTATTACTGAAAGCTAAT 57.215 29.630 0.00 0.00 37.60 1.73
41 42 9.212641 CATATGTATGCACTATTACTGAAAGCT 57.787 33.333 0.00 0.00 37.60 3.74
42 43 8.993121 ACATATGTATGCACTATTACTGAAAGC 58.007 33.333 6.56 0.00 35.45 3.51
44 45 9.830975 ACACATATGTATGCACTATTACTGAAA 57.169 29.630 8.32 0.00 37.26 2.69
45 46 9.830975 AACACATATGTATGCACTATTACTGAA 57.169 29.630 8.32 0.00 38.45 3.02
46 47 9.830975 AAACACATATGTATGCACTATTACTGA 57.169 29.630 8.32 0.00 38.45 3.41
49 50 9.663904 CCAAAACACATATGTATGCACTATTAC 57.336 33.333 8.32 0.00 38.45 1.89
50 51 9.620259 TCCAAAACACATATGTATGCACTATTA 57.380 29.630 8.32 0.00 38.45 0.98
51 52 8.518430 TCCAAAACACATATGTATGCACTATT 57.482 30.769 8.32 0.00 38.45 1.73
52 53 8.570488 CATCCAAAACACATATGTATGCACTAT 58.430 33.333 8.32 0.00 38.45 2.12
53 54 7.555914 ACATCCAAAACACATATGTATGCACTA 59.444 33.333 8.32 0.00 38.45 2.74
54 55 6.377996 ACATCCAAAACACATATGTATGCACT 59.622 34.615 8.32 0.00 38.45 4.40
55 56 6.473131 CACATCCAAAACACATATGTATGCAC 59.527 38.462 8.32 0.00 38.45 4.57
56 57 6.376581 TCACATCCAAAACACATATGTATGCA 59.623 34.615 8.32 0.00 38.45 3.96
57 58 6.794374 TCACATCCAAAACACATATGTATGC 58.206 36.000 8.32 0.00 38.45 3.14
58 59 6.914215 GCTCACATCCAAAACACATATGTATG 59.086 38.462 8.32 9.26 38.45 2.39
59 60 6.602803 TGCTCACATCCAAAACACATATGTAT 59.397 34.615 8.32 0.00 38.45 2.29
60 61 5.942826 TGCTCACATCCAAAACACATATGTA 59.057 36.000 8.32 0.00 38.45 2.29
61 62 4.766373 TGCTCACATCCAAAACACATATGT 59.234 37.500 1.41 1.41 42.46 2.29
62 63 5.313520 TGCTCACATCCAAAACACATATG 57.686 39.130 0.00 0.00 0.00 1.78
63 64 4.400251 CCTGCTCACATCCAAAACACATAT 59.600 41.667 0.00 0.00 0.00 1.78
64 65 3.758023 CCTGCTCACATCCAAAACACATA 59.242 43.478 0.00 0.00 0.00 2.29
65 66 2.559668 CCTGCTCACATCCAAAACACAT 59.440 45.455 0.00 0.00 0.00 3.21
66 67 1.955778 CCTGCTCACATCCAAAACACA 59.044 47.619 0.00 0.00 0.00 3.72
67 68 1.956477 ACCTGCTCACATCCAAAACAC 59.044 47.619 0.00 0.00 0.00 3.32
68 69 2.363306 ACCTGCTCACATCCAAAACA 57.637 45.000 0.00 0.00 0.00 2.83
69 70 4.009675 TCATACCTGCTCACATCCAAAAC 58.990 43.478 0.00 0.00 0.00 2.43
70 71 4.009675 GTCATACCTGCTCACATCCAAAA 58.990 43.478 0.00 0.00 0.00 2.44
71 72 3.264193 AGTCATACCTGCTCACATCCAAA 59.736 43.478 0.00 0.00 0.00 3.28
72 73 2.840038 AGTCATACCTGCTCACATCCAA 59.160 45.455 0.00 0.00 0.00 3.53
73 74 2.470990 AGTCATACCTGCTCACATCCA 58.529 47.619 0.00 0.00 0.00 3.41
74 75 4.881019 ATAGTCATACCTGCTCACATCC 57.119 45.455 0.00 0.00 0.00 3.51
75 76 6.582677 AGTATAGTCATACCTGCTCACATC 57.417 41.667 0.00 0.00 38.24 3.06
76 77 7.004691 TGTAGTATAGTCATACCTGCTCACAT 58.995 38.462 0.00 0.00 38.24 3.21
77 78 6.362248 TGTAGTATAGTCATACCTGCTCACA 58.638 40.000 0.00 0.00 38.24 3.58
78 79 6.879276 TGTAGTATAGTCATACCTGCTCAC 57.121 41.667 0.00 0.00 38.24 3.51
79 80 7.061054 AGTTGTAGTATAGTCATACCTGCTCA 58.939 38.462 0.00 0.00 38.24 4.26
80 81 7.513371 AGTTGTAGTATAGTCATACCTGCTC 57.487 40.000 0.00 0.00 38.24 4.26
81 82 7.201920 CCAAGTTGTAGTATAGTCATACCTGCT 60.202 40.741 1.45 0.00 38.24 4.24
82 83 6.924060 CCAAGTTGTAGTATAGTCATACCTGC 59.076 42.308 1.45 0.00 38.24 4.85
83 84 8.234136 TCCAAGTTGTAGTATAGTCATACCTG 57.766 38.462 1.45 0.00 38.24 4.00
84 85 8.693625 GTTCCAAGTTGTAGTATAGTCATACCT 58.306 37.037 1.45 0.00 38.24 3.08
85 86 8.693625 AGTTCCAAGTTGTAGTATAGTCATACC 58.306 37.037 1.45 0.00 38.24 2.73
89 90 9.841295 AAAAAGTTCCAAGTTGTAGTATAGTCA 57.159 29.630 1.45 0.00 0.00 3.41
91 92 9.841295 TGAAAAAGTTCCAAGTTGTAGTATAGT 57.159 29.630 1.45 0.00 32.28 2.12
94 95 9.574516 AGATGAAAAAGTTCCAAGTTGTAGTAT 57.425 29.630 1.45 0.00 32.28 2.12
95 96 8.974060 AGATGAAAAAGTTCCAAGTTGTAGTA 57.026 30.769 1.45 0.00 32.28 1.82
96 97 7.881775 AGATGAAAAAGTTCCAAGTTGTAGT 57.118 32.000 1.45 0.00 32.28 2.73
97 98 7.168135 GCAAGATGAAAAAGTTCCAAGTTGTAG 59.832 37.037 1.45 0.00 32.28 2.74
98 99 6.978080 GCAAGATGAAAAAGTTCCAAGTTGTA 59.022 34.615 1.45 0.00 32.28 2.41
99 100 5.812127 GCAAGATGAAAAAGTTCCAAGTTGT 59.188 36.000 1.45 0.00 32.28 3.32
100 101 5.811613 TGCAAGATGAAAAAGTTCCAAGTTG 59.188 36.000 0.00 0.00 32.28 3.16
101 102 5.976458 TGCAAGATGAAAAAGTTCCAAGTT 58.024 33.333 0.00 0.00 32.28 2.66
102 103 5.596836 TGCAAGATGAAAAAGTTCCAAGT 57.403 34.783 0.00 0.00 32.28 3.16
103 104 7.011669 ACAATTGCAAGATGAAAAAGTTCCAAG 59.988 33.333 18.76 0.00 32.28 3.61
104 105 6.822676 ACAATTGCAAGATGAAAAAGTTCCAA 59.177 30.769 18.76 0.00 32.28 3.53
105 106 6.347696 ACAATTGCAAGATGAAAAAGTTCCA 58.652 32.000 18.76 0.00 32.28 3.53
106 107 6.849588 ACAATTGCAAGATGAAAAAGTTCC 57.150 33.333 18.76 0.00 32.28 3.62
108 109 9.986833 GTTAAACAATTGCAAGATGAAAAAGTT 57.013 25.926 18.76 4.77 0.00 2.66
109 110 9.382275 AGTTAAACAATTGCAAGATGAAAAAGT 57.618 25.926 18.76 10.34 0.00 2.66
110 111 9.853921 GAGTTAAACAATTGCAAGATGAAAAAG 57.146 29.630 18.76 0.00 0.00 2.27
111 112 9.598517 AGAGTTAAACAATTGCAAGATGAAAAA 57.401 25.926 18.76 8.49 0.00 1.94
113 114 9.897744 CTAGAGTTAAACAATTGCAAGATGAAA 57.102 29.630 18.76 9.03 0.00 2.69
114 115 9.283768 TCTAGAGTTAAACAATTGCAAGATGAA 57.716 29.630 18.76 3.58 0.00 2.57
115 116 8.721478 GTCTAGAGTTAAACAATTGCAAGATGA 58.279 33.333 18.76 0.00 0.00 2.92
116 117 8.725148 AGTCTAGAGTTAAACAATTGCAAGATG 58.275 33.333 4.94 9.34 0.00 2.90
117 118 8.854614 AGTCTAGAGTTAAACAATTGCAAGAT 57.145 30.769 4.94 0.00 0.00 2.40
118 119 8.677148 AAGTCTAGAGTTAAACAATTGCAAGA 57.323 30.769 11.23 0.00 0.00 3.02
119 120 9.736023 AAAAGTCTAGAGTTAAACAATTGCAAG 57.264 29.630 13.22 0.00 0.00 4.01
160 161 6.362248 ACACACCTGACCTAATGTACTTTTT 58.638 36.000 0.00 0.00 0.00 1.94
161 162 5.937111 ACACACCTGACCTAATGTACTTTT 58.063 37.500 0.00 0.00 0.00 2.27
162 163 5.562298 ACACACCTGACCTAATGTACTTT 57.438 39.130 0.00 0.00 0.00 2.66
163 164 6.042322 TGTTACACACCTGACCTAATGTACTT 59.958 38.462 0.00 0.00 0.00 2.24
164 165 5.541101 TGTTACACACCTGACCTAATGTACT 59.459 40.000 0.00 0.00 0.00 2.73
165 166 5.636543 GTGTTACACACCTGACCTAATGTAC 59.363 44.000 10.96 0.00 43.05 2.90
166 167 5.786311 GTGTTACACACCTGACCTAATGTA 58.214 41.667 10.96 0.00 43.05 2.29
167 168 4.638304 GTGTTACACACCTGACCTAATGT 58.362 43.478 10.96 0.00 43.05 2.71
179 180 7.984864 TCTGAATCAGGGCTGTGTTACACAC 62.985 48.000 14.73 11.13 39.57 3.82
180 181 2.105649 TGAATCAGGGCTGTGTTACACA 59.894 45.455 17.67 17.67 42.45 3.72
181 182 2.744202 CTGAATCAGGGCTGTGTTACAC 59.256 50.000 8.76 8.76 34.56 2.90
182 183 2.637382 TCTGAATCAGGGCTGTGTTACA 59.363 45.455 10.71 0.00 31.51 2.41
183 184 3.265791 CTCTGAATCAGGGCTGTGTTAC 58.734 50.000 10.71 0.00 31.51 2.50
184 185 2.906389 ACTCTGAATCAGGGCTGTGTTA 59.094 45.455 10.55 0.00 34.91 2.41
185 186 1.701847 ACTCTGAATCAGGGCTGTGTT 59.298 47.619 10.55 0.00 34.91 3.32
186 187 1.356124 ACTCTGAATCAGGGCTGTGT 58.644 50.000 10.55 0.00 34.91 3.72
187 188 2.486472 AACTCTGAATCAGGGCTGTG 57.514 50.000 10.55 0.00 34.91 3.66
188 189 4.327680 GTTAAACTCTGAATCAGGGCTGT 58.672 43.478 10.55 2.05 34.91 4.40
189 190 3.372206 CGTTAAACTCTGAATCAGGGCTG 59.628 47.826 10.55 1.44 34.91 4.85
190 191 3.008049 ACGTTAAACTCTGAATCAGGGCT 59.992 43.478 10.55 0.00 34.91 5.19
191 192 3.335579 ACGTTAAACTCTGAATCAGGGC 58.664 45.455 10.55 0.00 34.91 5.19
192 193 4.822026 AGACGTTAAACTCTGAATCAGGG 58.178 43.478 8.88 8.88 38.07 4.45
193 194 4.865365 GGAGACGTTAAACTCTGAATCAGG 59.135 45.833 10.71 3.94 34.11 3.86
194 195 5.715070 AGGAGACGTTAAACTCTGAATCAG 58.285 41.667 3.38 3.38 34.11 2.90
195 196 5.336531 GGAGGAGACGTTAAACTCTGAATCA 60.337 44.000 0.00 0.00 34.11 2.57
196 197 5.103687 GGAGGAGACGTTAAACTCTGAATC 58.896 45.833 0.00 0.00 34.11 2.52
197 198 4.081586 GGGAGGAGACGTTAAACTCTGAAT 60.082 45.833 0.00 0.00 34.11 2.57
198 199 3.257624 GGGAGGAGACGTTAAACTCTGAA 59.742 47.826 0.00 0.00 34.11 3.02
199 200 2.824341 GGGAGGAGACGTTAAACTCTGA 59.176 50.000 0.00 0.00 34.11 3.27
200 201 2.561419 TGGGAGGAGACGTTAAACTCTG 59.439 50.000 0.00 0.00 34.11 3.35
201 202 2.561858 GTGGGAGGAGACGTTAAACTCT 59.438 50.000 0.00 0.00 34.11 3.24
202 203 2.561858 AGTGGGAGGAGACGTTAAACTC 59.438 50.000 0.00 0.00 0.00 3.01
203 204 2.606378 AGTGGGAGGAGACGTTAAACT 58.394 47.619 0.00 0.00 0.00 2.66
204 205 4.525912 TTAGTGGGAGGAGACGTTAAAC 57.474 45.455 0.00 0.00 0.00 2.01
205 206 5.544650 CTTTTAGTGGGAGGAGACGTTAAA 58.455 41.667 0.00 0.00 0.00 1.52
206 207 4.562143 GCTTTTAGTGGGAGGAGACGTTAA 60.562 45.833 0.00 0.00 0.00 2.01
207 208 3.056322 GCTTTTAGTGGGAGGAGACGTTA 60.056 47.826 0.00 0.00 0.00 3.18
208 209 2.289506 GCTTTTAGTGGGAGGAGACGTT 60.290 50.000 0.00 0.00 0.00 3.99
209 210 1.275573 GCTTTTAGTGGGAGGAGACGT 59.724 52.381 0.00 0.00 0.00 4.34
210 211 1.275291 TGCTTTTAGTGGGAGGAGACG 59.725 52.381 0.00 0.00 0.00 4.18
211 212 3.636153 ATGCTTTTAGTGGGAGGAGAC 57.364 47.619 0.00 0.00 0.00 3.36
212 213 4.039245 CGATATGCTTTTAGTGGGAGGAGA 59.961 45.833 0.00 0.00 0.00 3.71
213 214 4.310769 CGATATGCTTTTAGTGGGAGGAG 58.689 47.826 0.00 0.00 0.00 3.69
214 215 3.494398 GCGATATGCTTTTAGTGGGAGGA 60.494 47.826 0.00 0.00 41.73 3.71
215 216 2.808543 GCGATATGCTTTTAGTGGGAGG 59.191 50.000 0.00 0.00 41.73 4.30
216 217 2.808543 GGCGATATGCTTTTAGTGGGAG 59.191 50.000 0.00 0.00 45.43 4.30
217 218 2.171659 TGGCGATATGCTTTTAGTGGGA 59.828 45.455 0.00 0.00 45.43 4.37
218 219 2.549754 CTGGCGATATGCTTTTAGTGGG 59.450 50.000 0.00 0.00 45.43 4.61
219 220 3.466836 TCTGGCGATATGCTTTTAGTGG 58.533 45.455 0.00 0.00 45.43 4.00
220 221 5.679734 ATTCTGGCGATATGCTTTTAGTG 57.320 39.130 0.00 0.00 45.43 2.74
221 222 6.543831 AGAAATTCTGGCGATATGCTTTTAGT 59.456 34.615 0.00 0.00 45.43 2.24
222 223 6.854892 CAGAAATTCTGGCGATATGCTTTTAG 59.145 38.462 14.85 0.00 45.43 1.85
223 224 6.542005 TCAGAAATTCTGGCGATATGCTTTTA 59.458 34.615 21.35 0.00 44.39 1.52
224 225 5.357878 TCAGAAATTCTGGCGATATGCTTTT 59.642 36.000 21.35 0.00 44.39 2.27
225 226 4.883585 TCAGAAATTCTGGCGATATGCTTT 59.116 37.500 21.35 0.00 44.39 3.51
226 227 4.454678 TCAGAAATTCTGGCGATATGCTT 58.545 39.130 21.35 0.00 44.39 3.91
227 228 4.077300 TCAGAAATTCTGGCGATATGCT 57.923 40.909 21.35 0.00 44.39 3.79
228 229 4.818534 TTCAGAAATTCTGGCGATATGC 57.181 40.909 21.35 0.00 44.39 3.14
229 230 9.903682 ATTTATTTCAGAAATTCTGGCGATATG 57.096 29.630 21.35 0.00 44.39 1.78
231 232 8.567948 GGATTTATTTCAGAAATTCTGGCGATA 58.432 33.333 21.35 13.90 44.39 2.92
232 233 7.068593 TGGATTTATTTCAGAAATTCTGGCGAT 59.931 33.333 21.35 14.73 44.39 4.58
233 234 6.376864 TGGATTTATTTCAGAAATTCTGGCGA 59.623 34.615 21.35 9.21 44.39 5.54
234 235 6.563422 TGGATTTATTTCAGAAATTCTGGCG 58.437 36.000 21.35 0.00 44.39 5.69
235 236 8.253113 TCTTGGATTTATTTCAGAAATTCTGGC 58.747 33.333 21.35 1.31 44.39 4.85
243 244 9.734620 CGCATTTATCTTGGATTTATTTCAGAA 57.265 29.630 0.00 0.00 0.00 3.02
244 245 9.119418 TCGCATTTATCTTGGATTTATTTCAGA 57.881 29.630 0.00 0.00 0.00 3.27
245 246 9.390795 CTCGCATTTATCTTGGATTTATTTCAG 57.609 33.333 0.00 0.00 0.00 3.02
246 247 7.862372 GCTCGCATTTATCTTGGATTTATTTCA 59.138 33.333 0.00 0.00 0.00 2.69
247 248 7.862372 TGCTCGCATTTATCTTGGATTTATTTC 59.138 33.333 0.00 0.00 0.00 2.17
248 249 7.649306 GTGCTCGCATTTATCTTGGATTTATTT 59.351 33.333 0.00 0.00 0.00 1.40
249 250 7.141363 GTGCTCGCATTTATCTTGGATTTATT 58.859 34.615 0.00 0.00 0.00 1.40
250 251 6.294176 GGTGCTCGCATTTATCTTGGATTTAT 60.294 38.462 0.00 0.00 0.00 1.40
251 252 5.008613 GGTGCTCGCATTTATCTTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
252 253 4.202050 GGTGCTCGCATTTATCTTGGATTT 60.202 41.667 0.00 0.00 0.00 2.17
253 254 3.316308 GGTGCTCGCATTTATCTTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
254 255 2.880890 GGTGCTCGCATTTATCTTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
255 256 2.288666 GGTGCTCGCATTTATCTTGGA 58.711 47.619 0.00 0.00 0.00 3.53
256 257 2.016318 TGGTGCTCGCATTTATCTTGG 58.984 47.619 0.00 0.00 0.00 3.61
257 258 2.032550 CCTGGTGCTCGCATTTATCTTG 59.967 50.000 0.00 0.00 0.00 3.02
258 259 2.092968 TCCTGGTGCTCGCATTTATCTT 60.093 45.455 0.00 0.00 0.00 2.40
259 260 1.486310 TCCTGGTGCTCGCATTTATCT 59.514 47.619 0.00 0.00 0.00 1.98
260 261 1.953559 TCCTGGTGCTCGCATTTATC 58.046 50.000 0.00 0.00 0.00 1.75
261 262 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
262 263 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
263 264 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
264 265 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
265 266 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
266 267 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
267 268 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
268 269 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
269 270 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
270 271 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
271 272 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
287 288 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
288 289 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
289 290 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
290 291 1.613061 CTGGTATCCCCAACCCACC 59.387 63.158 0.00 0.00 44.65 4.61
291 292 1.613061 CCTGGTATCCCCAACCCAC 59.387 63.158 0.00 0.00 44.65 4.61
292 293 1.621205 CCCTGGTATCCCCAACCCA 60.621 63.158 0.00 0.00 44.65 4.51
293 294 1.621514 ACCCTGGTATCCCCAACCC 60.622 63.158 0.00 0.00 44.65 4.11
294 295 1.642513 GGACCCTGGTATCCCCAACC 61.643 65.000 3.36 0.00 44.65 3.77
295 296 0.917333 TGGACCCTGGTATCCCCAAC 60.917 60.000 10.79 0.00 44.65 3.77
296 297 0.917333 GTGGACCCTGGTATCCCCAA 60.917 60.000 10.79 0.00 44.65 4.12
297 298 1.307517 GTGGACCCTGGTATCCCCA 60.308 63.158 10.79 0.00 42.51 4.96
298 299 2.076803 GGTGGACCCTGGTATCCCC 61.077 68.421 10.79 8.27 33.69 4.81
299 300 0.266753 TAGGTGGACCCTGGTATCCC 59.733 60.000 10.79 3.88 45.81 3.85
300 301 1.767088 GTTAGGTGGACCCTGGTATCC 59.233 57.143 7.19 7.19 45.81 2.59
301 302 1.767088 GGTTAGGTGGACCCTGGTATC 59.233 57.143 0.00 0.00 45.81 2.24
302 303 1.081513 TGGTTAGGTGGACCCTGGTAT 59.918 52.381 0.00 0.00 45.81 2.73
303 304 0.492730 TGGTTAGGTGGACCCTGGTA 59.507 55.000 0.00 0.00 45.81 3.25
304 305 0.178843 ATGGTTAGGTGGACCCTGGT 60.179 55.000 0.00 0.00 45.81 4.00
305 306 0.546598 GATGGTTAGGTGGACCCTGG 59.453 60.000 0.00 0.00 45.81 4.45
306 307 1.486726 GAGATGGTTAGGTGGACCCTG 59.513 57.143 0.00 0.00 45.81 4.45
308 309 1.580059 TGAGATGGTTAGGTGGACCC 58.420 55.000 0.00 0.00 36.30 4.46
309 310 2.355818 GGTTGAGATGGTTAGGTGGACC 60.356 54.545 0.00 0.00 37.69 4.46
310 311 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
311 312 2.571653 CTGGTTGAGATGGTTAGGTGGA 59.428 50.000 0.00 0.00 0.00 4.02
312 313 2.571653 TCTGGTTGAGATGGTTAGGTGG 59.428 50.000 0.00 0.00 0.00 4.61
313 314 3.369892 CCTCTGGTTGAGATGGTTAGGTG 60.370 52.174 0.00 0.00 45.39 4.00
314 315 2.840651 CCTCTGGTTGAGATGGTTAGGT 59.159 50.000 0.00 0.00 45.39 3.08
315 316 2.840651 ACCTCTGGTTGAGATGGTTAGG 59.159 50.000 0.00 0.00 45.39 2.69
316 317 4.559862 AACCTCTGGTTGAGATGGTTAG 57.440 45.455 0.71 0.00 45.07 2.34
330 331 2.359975 GGGGCGAACCAACCTCTG 60.360 66.667 0.00 0.00 42.91 3.35
331 332 2.457323 TTGGGGCGAACCAACCTCT 61.457 57.895 7.10 0.00 45.19 3.69
332 333 2.114411 TTGGGGCGAACCAACCTC 59.886 61.111 7.10 0.00 45.19 3.85
337 338 2.224917 ACTCTAAATTTGGGGCGAACCA 60.225 45.455 0.57 0.00 42.91 3.67
338 339 2.443416 ACTCTAAATTTGGGGCGAACC 58.557 47.619 0.57 0.00 39.11 3.62
339 340 4.022676 TGAAACTCTAAATTTGGGGCGAAC 60.023 41.667 0.57 0.00 0.00 3.95
340 341 4.022676 GTGAAACTCTAAATTTGGGGCGAA 60.023 41.667 0.57 0.00 0.00 4.70
341 342 3.504520 GTGAAACTCTAAATTTGGGGCGA 59.495 43.478 0.57 0.00 0.00 5.54
342 343 3.833442 GTGAAACTCTAAATTTGGGGCG 58.167 45.455 0.57 0.00 0.00 6.13
354 355 8.126700 CGTTGTTAATAAACCAAGTGAAACTCT 58.873 33.333 0.00 0.00 40.00 3.24
355 356 8.124199 TCGTTGTTAATAAACCAAGTGAAACTC 58.876 33.333 0.00 0.00 40.00 3.01
356 357 7.987649 TCGTTGTTAATAAACCAAGTGAAACT 58.012 30.769 0.00 0.00 41.87 2.66
357 358 8.617761 TTCGTTGTTAATAAACCAAGTGAAAC 57.382 30.769 0.00 0.00 34.49 2.78
358 359 9.453325 GATTCGTTGTTAATAAACCAAGTGAAA 57.547 29.630 0.00 0.00 34.49 2.69
359 360 8.842280 AGATTCGTTGTTAATAAACCAAGTGAA 58.158 29.630 0.00 0.00 34.49 3.18
360 361 8.385898 AGATTCGTTGTTAATAAACCAAGTGA 57.614 30.769 0.00 0.00 34.49 3.41
369 370 8.800972 CGCACTAGTTAGATTCGTTGTTAATAA 58.199 33.333 0.00 0.00 0.00 1.40
370 371 8.183536 TCGCACTAGTTAGATTCGTTGTTAATA 58.816 33.333 0.00 0.00 0.00 0.98
371 372 7.008992 GTCGCACTAGTTAGATTCGTTGTTAAT 59.991 37.037 0.00 0.00 0.00 1.40
372 373 6.306356 GTCGCACTAGTTAGATTCGTTGTTAA 59.694 38.462 0.00 0.00 0.00 2.01
373 374 5.796935 GTCGCACTAGTTAGATTCGTTGTTA 59.203 40.000 0.00 0.00 0.00 2.41
374 375 4.620184 GTCGCACTAGTTAGATTCGTTGTT 59.380 41.667 0.00 0.00 0.00 2.83
375 376 4.164294 GTCGCACTAGTTAGATTCGTTGT 58.836 43.478 0.00 0.00 0.00 3.32
376 377 3.546670 GGTCGCACTAGTTAGATTCGTTG 59.453 47.826 0.00 0.00 0.00 4.10
377 378 3.442977 AGGTCGCACTAGTTAGATTCGTT 59.557 43.478 0.00 0.00 0.00 3.85
378 379 3.015327 AGGTCGCACTAGTTAGATTCGT 58.985 45.455 0.00 0.00 0.00 3.85
379 380 3.694535 AGGTCGCACTAGTTAGATTCG 57.305 47.619 0.00 0.00 0.00 3.34
380 381 5.163683 TGTGTAGGTCGCACTAGTTAGATTC 60.164 44.000 0.00 0.00 37.70 2.52
381 382 4.703575 TGTGTAGGTCGCACTAGTTAGATT 59.296 41.667 0.00 0.00 37.70 2.40
382 383 4.267536 TGTGTAGGTCGCACTAGTTAGAT 58.732 43.478 0.00 0.00 37.70 1.98
383 384 3.678289 TGTGTAGGTCGCACTAGTTAGA 58.322 45.455 0.00 0.00 37.70 2.10
384 385 4.634184 ATGTGTAGGTCGCACTAGTTAG 57.366 45.455 0.00 0.00 39.47 2.34
385 386 5.066893 CCTAATGTGTAGGTCGCACTAGTTA 59.933 44.000 0.00 0.00 39.47 2.24
386 387 3.955650 AATGTGTAGGTCGCACTAGTT 57.044 42.857 0.00 0.00 39.47 2.24
387 388 3.380637 CCTAATGTGTAGGTCGCACTAGT 59.619 47.826 0.00 0.00 39.47 2.57
388 389 3.243434 CCCTAATGTGTAGGTCGCACTAG 60.243 52.174 0.00 0.00 39.47 2.57
389 390 2.691526 CCCTAATGTGTAGGTCGCACTA 59.308 50.000 0.00 0.00 39.47 2.74
390 391 1.480954 CCCTAATGTGTAGGTCGCACT 59.519 52.381 0.00 0.00 39.47 4.40
391 392 1.472728 CCCCTAATGTGTAGGTCGCAC 60.473 57.143 0.00 0.00 39.47 5.34
392 393 0.828022 CCCCTAATGTGTAGGTCGCA 59.172 55.000 0.00 0.00 40.97 5.10
393 394 0.532196 GCCCCTAATGTGTAGGTCGC 60.532 60.000 0.00 0.00 32.88 5.19
394 395 1.120530 AGCCCCTAATGTGTAGGTCG 58.879 55.000 0.00 0.00 32.88 4.79
395 396 2.103263 CTCAGCCCCTAATGTGTAGGTC 59.897 54.545 0.00 0.00 32.88 3.85
396 397 2.119495 CTCAGCCCCTAATGTGTAGGT 58.881 52.381 0.00 0.00 32.88 3.08
397 398 2.119495 ACTCAGCCCCTAATGTGTAGG 58.881 52.381 0.00 0.00 34.52 3.18
398 399 3.535561 CAACTCAGCCCCTAATGTGTAG 58.464 50.000 0.00 0.00 0.00 2.74
399 400 2.238646 CCAACTCAGCCCCTAATGTGTA 59.761 50.000 0.00 0.00 0.00 2.90
400 401 1.004745 CCAACTCAGCCCCTAATGTGT 59.995 52.381 0.00 0.00 0.00 3.72
401 402 1.755179 CCAACTCAGCCCCTAATGTG 58.245 55.000 0.00 0.00 0.00 3.21
402 403 0.034089 GCCAACTCAGCCCCTAATGT 60.034 55.000 0.00 0.00 0.00 2.71
403 404 0.034186 TGCCAACTCAGCCCCTAATG 60.034 55.000 0.00 0.00 0.00 1.90
404 405 0.704076 TTGCCAACTCAGCCCCTAAT 59.296 50.000 0.00 0.00 0.00 1.73
405 406 0.480690 TTTGCCAACTCAGCCCCTAA 59.519 50.000 0.00 0.00 0.00 2.69
406 407 0.480690 TTTTGCCAACTCAGCCCCTA 59.519 50.000 0.00 0.00 0.00 3.53
407 408 0.398381 TTTTTGCCAACTCAGCCCCT 60.398 50.000 0.00 0.00 0.00 4.79
408 409 0.686789 ATTTTTGCCAACTCAGCCCC 59.313 50.000 0.00 0.00 0.00 5.80
409 410 3.734902 CGATATTTTTGCCAACTCAGCCC 60.735 47.826 0.00 0.00 0.00 5.19
410 411 3.438360 CGATATTTTTGCCAACTCAGCC 58.562 45.455 0.00 0.00 0.00 4.85
411 412 2.854185 GCGATATTTTTGCCAACTCAGC 59.146 45.455 0.00 0.00 0.00 4.26
420 421 1.583404 CTTGCGTGGCGATATTTTTGC 59.417 47.619 0.00 0.00 0.00 3.68
421 422 1.583404 GCTTGCGTGGCGATATTTTTG 59.417 47.619 0.00 0.00 0.00 2.44
422 423 1.201181 TGCTTGCGTGGCGATATTTTT 59.799 42.857 0.00 0.00 0.00 1.94
423 424 0.808125 TGCTTGCGTGGCGATATTTT 59.192 45.000 0.00 0.00 0.00 1.82
424 425 1.024271 ATGCTTGCGTGGCGATATTT 58.976 45.000 0.00 0.00 0.00 1.40
425 426 0.308684 CATGCTTGCGTGGCGATATT 59.691 50.000 6.91 0.00 0.00 1.28
426 427 1.944035 CATGCTTGCGTGGCGATAT 59.056 52.632 6.91 0.00 0.00 1.63
427 428 2.822758 GCATGCTTGCGTGGCGATA 61.823 57.895 11.37 0.00 39.49 2.92
428 429 4.183686 GCATGCTTGCGTGGCGAT 62.184 61.111 11.37 0.00 39.49 4.58
437 438 4.093998 AGAATAAACGAGTCAGCATGCTTG 59.906 41.667 19.98 13.88 34.76 4.01
438 439 4.256920 AGAATAAACGAGTCAGCATGCTT 58.743 39.130 19.98 3.07 34.76 3.91
439 440 3.866651 AGAATAAACGAGTCAGCATGCT 58.133 40.909 16.30 16.30 34.76 3.79
440 441 4.494855 GGAAGAATAAACGAGTCAGCATGC 60.495 45.833 10.51 10.51 34.76 4.06
441 442 4.872691 AGGAAGAATAAACGAGTCAGCATG 59.127 41.667 0.00 0.00 37.54 4.06
442 443 5.091261 AGGAAGAATAAACGAGTCAGCAT 57.909 39.130 0.00 0.00 0.00 3.79
443 444 4.537135 AGGAAGAATAAACGAGTCAGCA 57.463 40.909 0.00 0.00 0.00 4.41
444 445 5.163844 GGAAAGGAAGAATAAACGAGTCAGC 60.164 44.000 0.00 0.00 0.00 4.26
445 446 5.351740 GGGAAAGGAAGAATAAACGAGTCAG 59.648 44.000 0.00 0.00 0.00 3.51
446 447 5.012768 AGGGAAAGGAAGAATAAACGAGTCA 59.987 40.000 0.00 0.00 0.00 3.41
447 448 5.489249 AGGGAAAGGAAGAATAAACGAGTC 58.511 41.667 0.00 0.00 0.00 3.36
448 449 5.248705 AGAGGGAAAGGAAGAATAAACGAGT 59.751 40.000 0.00 0.00 0.00 4.18
449 450 5.735766 AGAGGGAAAGGAAGAATAAACGAG 58.264 41.667 0.00 0.00 0.00 4.18
450 451 5.757099 AGAGGGAAAGGAAGAATAAACGA 57.243 39.130 0.00 0.00 0.00 3.85
451 452 6.612306 CAAAGAGGGAAAGGAAGAATAAACG 58.388 40.000 0.00 0.00 0.00 3.60
452 453 6.015434 TGCAAAGAGGGAAAGGAAGAATAAAC 60.015 38.462 0.00 0.00 0.00 2.01
453 454 6.015434 GTGCAAAGAGGGAAAGGAAGAATAAA 60.015 38.462 0.00 0.00 0.00 1.40
454 455 5.476945 GTGCAAAGAGGGAAAGGAAGAATAA 59.523 40.000 0.00 0.00 0.00 1.40
455 456 5.010282 GTGCAAAGAGGGAAAGGAAGAATA 58.990 41.667 0.00 0.00 0.00 1.75
456 457 3.829026 GTGCAAAGAGGGAAAGGAAGAAT 59.171 43.478 0.00 0.00 0.00 2.40
457 458 3.222603 GTGCAAAGAGGGAAAGGAAGAA 58.777 45.455 0.00 0.00 0.00 2.52
458 459 2.810400 CGTGCAAAGAGGGAAAGGAAGA 60.810 50.000 0.00 0.00 0.00 2.87
459 460 1.537202 CGTGCAAAGAGGGAAAGGAAG 59.463 52.381 0.00 0.00 0.00 3.46
460 461 1.133915 ACGTGCAAAGAGGGAAAGGAA 60.134 47.619 0.00 0.00 0.00 3.36
461 462 0.472471 ACGTGCAAAGAGGGAAAGGA 59.528 50.000 0.00 0.00 0.00 3.36
462 463 0.593128 CACGTGCAAAGAGGGAAAGG 59.407 55.000 0.82 0.00 0.00 3.11
463 464 0.040067 GCACGTGCAAAGAGGGAAAG 60.040 55.000 34.52 0.00 41.59 2.62
464 465 1.452145 GGCACGTGCAAAGAGGGAAA 61.452 55.000 38.60 0.00 44.36 3.13
465 466 1.896660 GGCACGTGCAAAGAGGGAA 60.897 57.895 38.60 0.00 44.36 3.97
466 467 2.281484 GGCACGTGCAAAGAGGGA 60.281 61.111 38.60 0.00 44.36 4.20
467 468 1.898574 AAGGCACGTGCAAAGAGGG 60.899 57.895 38.60 0.52 44.36 4.30
468 469 1.283793 CAAGGCACGTGCAAAGAGG 59.716 57.895 38.60 18.94 44.36 3.69
469 470 0.381801 AACAAGGCACGTGCAAAGAG 59.618 50.000 38.60 24.90 42.85 2.85
470 471 0.380378 GAACAAGGCACGTGCAAAGA 59.620 50.000 38.60 0.00 42.85 2.52
471 472 0.100325 TGAACAAGGCACGTGCAAAG 59.900 50.000 38.60 28.18 42.85 2.77
472 473 0.528017 TTGAACAAGGCACGTGCAAA 59.472 45.000 38.60 18.58 42.85 3.68
473 474 0.743688 ATTGAACAAGGCACGTGCAA 59.256 45.000 38.60 23.84 42.85 4.08
474 475 0.030504 CATTGAACAAGGCACGTGCA 59.969 50.000 38.60 18.57 42.85 4.57
475 476 1.277495 GCATTGAACAAGGCACGTGC 61.277 55.000 32.15 32.15 46.18 5.34
476 477 2.800096 GCATTGAACAAGGCACGTG 58.200 52.632 12.28 12.28 46.18 4.49
482 483 4.947645 TGGAGAAAAAGCATTGAACAAGG 58.052 39.130 0.00 0.00 0.00 3.61
483 484 6.907206 TTTGGAGAAAAAGCATTGAACAAG 57.093 33.333 0.00 0.00 0.00 3.16
484 485 6.907206 CTTTGGAGAAAAAGCATTGAACAA 57.093 33.333 0.00 0.00 30.84 2.83
501 502 1.228245 GGTGCTCCACTGCTTTGGA 60.228 57.895 0.00 6.68 43.83 3.53
502 503 1.228367 AGGTGCTCCACTGCTTTGG 60.228 57.895 7.70 0.00 38.10 3.28
503 504 1.954528 CAGGTGCTCCACTGCTTTG 59.045 57.895 7.70 0.00 34.40 2.77
504 505 1.900498 GCAGGTGCTCCACTGCTTT 60.900 57.895 7.70 0.00 36.42 3.51
505 506 2.282040 GCAGGTGCTCCACTGCTT 60.282 61.111 7.70 0.00 36.42 3.91
506 507 2.903635 ATGCAGGTGCTCCACTGCT 61.904 57.895 16.97 3.84 42.66 4.24
507 508 2.360852 ATGCAGGTGCTCCACTGC 60.361 61.111 7.70 9.66 42.66 4.40
508 509 1.002990 TCATGCAGGTGCTCCACTG 60.003 57.895 7.70 0.00 42.66 3.66
509 510 1.298993 CTCATGCAGGTGCTCCACT 59.701 57.895 7.70 0.00 42.66 4.00
510 511 2.404995 GCTCATGCAGGTGCTCCAC 61.405 63.158 17.34 0.00 42.66 4.02
511 512 2.045634 GCTCATGCAGGTGCTCCA 60.046 61.111 17.34 0.00 42.66 3.86
512 513 1.818785 GAGCTCATGCAGGTGCTCC 60.819 63.158 33.64 20.79 44.16 4.70
513 514 3.810812 GAGCTCATGCAGGTGCTC 58.189 61.111 31.53 31.53 43.75 4.26
514 515 2.271497 GGAGCTCATGCAGGTGCT 59.729 61.111 25.93 25.93 42.74 4.40
515 516 1.818785 GAGGAGCTCATGCAGGTGC 60.819 63.158 16.95 16.95 41.14 5.01
516 517 1.153208 GGAGGAGCTCATGCAGGTG 60.153 63.158 15.41 0.00 42.74 4.00
517 518 1.306825 AGGAGGAGCTCATGCAGGT 60.307 57.895 22.06 0.00 42.74 4.00
518 519 1.049855 AGAGGAGGAGCTCATGCAGG 61.050 60.000 22.06 0.00 42.74 4.85
519 520 0.390124 GAGAGGAGGAGCTCATGCAG 59.610 60.000 22.06 0.00 42.74 4.41
520 521 1.047596 GGAGAGGAGGAGCTCATGCA 61.048 60.000 22.06 0.00 42.74 3.96
521 522 1.747774 GGAGAGGAGGAGCTCATGC 59.252 63.158 17.19 14.76 40.05 4.06
522 523 0.105555 AGGGAGAGGAGGAGCTCATG 60.106 60.000 17.19 0.00 32.83 3.07
523 524 0.641601 AAGGGAGAGGAGGAGCTCAT 59.358 55.000 17.19 8.81 32.83 2.90
524 525 0.032615 GAAGGGAGAGGAGGAGCTCA 60.033 60.000 17.19 0.00 32.83 4.26
525 526 0.261696 AGAAGGGAGAGGAGGAGCTC 59.738 60.000 4.71 4.71 0.00 4.09
526 527 0.715987 AAGAAGGGAGAGGAGGAGCT 59.284 55.000 0.00 0.00 0.00 4.09
527 528 0.829990 CAAGAAGGGAGAGGAGGAGC 59.170 60.000 0.00 0.00 0.00 4.70
528 529 0.829990 GCAAGAAGGGAGAGGAGGAG 59.170 60.000 0.00 0.00 0.00 3.69
529 530 0.618968 GGCAAGAAGGGAGAGGAGGA 60.619 60.000 0.00 0.00 0.00 3.71
530 531 1.631071 GGGCAAGAAGGGAGAGGAGG 61.631 65.000 0.00 0.00 0.00 4.30
531 532 1.911471 GGGCAAGAAGGGAGAGGAG 59.089 63.158 0.00 0.00 0.00 3.69
532 533 1.990060 CGGGCAAGAAGGGAGAGGA 60.990 63.158 0.00 0.00 0.00 3.71
533 534 2.245438 GACGGGCAAGAAGGGAGAGG 62.245 65.000 0.00 0.00 0.00 3.69
534 535 1.219393 GACGGGCAAGAAGGGAGAG 59.781 63.158 0.00 0.00 0.00 3.20
535 536 2.646175 CGACGGGCAAGAAGGGAGA 61.646 63.158 0.00 0.00 0.00 3.71
536 537 2.125512 CGACGGGCAAGAAGGGAG 60.126 66.667 0.00 0.00 0.00 4.30
537 538 3.702048 CCGACGGGCAAGAAGGGA 61.702 66.667 5.81 0.00 0.00 4.20
538 539 4.778143 CCCGACGGGCAAGAAGGG 62.778 72.222 22.37 0.00 35.35 3.95
548 549 1.730451 AAAACCAAGTTGCCCGACGG 61.730 55.000 6.99 6.99 0.00 4.79
549 550 0.945813 TAAAACCAAGTTGCCCGACG 59.054 50.000 0.00 0.00 0.00 5.12
550 551 3.439895 TTTAAAACCAAGTTGCCCGAC 57.560 42.857 0.00 0.00 0.00 4.79
551 552 4.141914 ACATTTTAAAACCAAGTTGCCCGA 60.142 37.500 1.97 0.00 0.00 5.14
552 553 4.123506 ACATTTTAAAACCAAGTTGCCCG 58.876 39.130 1.97 0.00 0.00 6.13
553 554 5.815850 CAACATTTTAAAACCAAGTTGCCC 58.184 37.500 17.09 0.00 0.00 5.36
556 557 7.431668 CCATTGCAACATTTTAAAACCAAGTTG 59.568 33.333 21.12 21.12 38.24 3.16
557 558 7.121907 ACCATTGCAACATTTTAAAACCAAGTT 59.878 29.630 0.00 3.81 0.00 2.66
558 559 6.601217 ACCATTGCAACATTTTAAAACCAAGT 59.399 30.769 0.00 0.00 0.00 3.16
559 560 7.025485 ACCATTGCAACATTTTAAAACCAAG 57.975 32.000 0.00 0.00 0.00 3.61
560 561 6.599244 TGACCATTGCAACATTTTAAAACCAA 59.401 30.769 0.00 3.14 0.00 3.67
561 562 6.037610 GTGACCATTGCAACATTTTAAAACCA 59.962 34.615 0.00 0.00 0.00 3.67
562 563 6.426327 GTGACCATTGCAACATTTTAAAACC 58.574 36.000 0.00 0.00 0.00 3.27
563 564 6.426327 GGTGACCATTGCAACATTTTAAAAC 58.574 36.000 0.00 0.00 0.00 2.43
564 565 6.610741 GGTGACCATTGCAACATTTTAAAA 57.389 33.333 0.00 2.51 0.00 1.52
592 593 2.203938 ACCATGGACACCGGGAGT 60.204 61.111 21.47 3.34 0.00 3.85
593 594 2.268920 CACCATGGACACCGGGAG 59.731 66.667 21.47 0.00 0.00 4.30
594 595 3.326578 CCACCATGGACACCGGGA 61.327 66.667 21.47 0.00 40.96 5.14
595 596 3.326578 TCCACCATGGACACCGGG 61.327 66.667 21.47 9.62 42.67 5.73
603 604 2.332063 GTGGTAGTGATCCACCATGG 57.668 55.000 11.19 11.19 46.15 3.66
614 615 2.987149 GTCAATCACTCACGTGGTAGTG 59.013 50.000 24.27 24.27 43.63 2.74
615 616 2.626266 TGTCAATCACTCACGTGGTAGT 59.374 45.455 17.00 10.05 41.53 2.73
616 617 3.297830 TGTCAATCACTCACGTGGTAG 57.702 47.619 17.00 9.32 41.53 3.18
617 618 3.737032 TTGTCAATCACTCACGTGGTA 57.263 42.857 17.00 0.00 41.53 3.25
618 619 2.613026 TTGTCAATCACTCACGTGGT 57.387 45.000 17.00 9.81 41.53 4.16
619 620 3.961477 TTTTGTCAATCACTCACGTGG 57.039 42.857 17.00 9.11 41.53 4.94
648 650 0.185416 TGGGACGCAAACCCCTAAAA 59.815 50.000 0.00 0.00 46.21 1.52
857 867 3.179265 CCATGTGCGACCGACGAC 61.179 66.667 0.00 0.00 45.77 4.34
1320 1381 1.547372 GTCAGTGCCTTCAAATGCCAT 59.453 47.619 0.00 0.00 0.00 4.40
1434 1495 7.801716 TCAGAATAACAGCAACTAAACACTT 57.198 32.000 0.00 0.00 0.00 3.16
1726 1837 6.713903 CCAAGGTTCTGCTCATGATACATATT 59.286 38.462 0.00 0.00 0.00 1.28
1934 2045 2.158769 TGCTCCTCAAGTTGCTTCTTCA 60.159 45.455 0.00 0.00 0.00 3.02
2123 2234 2.708861 TGACCAACCTTAAGGAGCTCAA 59.291 45.455 28.52 6.55 38.94 3.02
2551 2702 7.063593 TGCTATCTATGGGATACTAGATGTCC 58.936 42.308 0.00 0.32 35.86 4.02
2562 2714 9.326489 TGTAAGACTAAATGCTATCTATGGGAT 57.674 33.333 0.00 0.00 38.38 3.85
2884 3083 2.072487 ATCGCCCCACCAGCACTAT 61.072 57.895 0.00 0.00 0.00 2.12
2885 3084 2.687200 ATCGCCCCACCAGCACTA 60.687 61.111 0.00 0.00 0.00 2.74
3079 3281 3.557903 AAGCAGCGCATGGACCAGT 62.558 57.895 11.47 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.