Multiple sequence alignment - TraesCS3A01G456100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G456100 chr3A 100.000 2927 0 0 1 2927 693445073 693442147 0.000000e+00 5406.0
1 TraesCS3A01G456100 chr3A 92.765 387 28 0 904 1290 693450426 693450040 7.080000e-156 560.0
2 TraesCS3A01G456100 chr3A 91.457 398 31 2 904 1298 693466439 693466836 7.130000e-151 544.0
3 TraesCS3A01G456100 chr3A 81.419 296 46 6 1636 1927 693449729 693449439 1.750000e-57 233.0
4 TraesCS3A01G456100 chr3A 94.872 39 2 0 2388 2426 18855330 18855292 8.760000e-06 62.1
5 TraesCS3A01G456100 chr3B 90.159 1514 115 18 659 2161 739951715 739950225 0.000000e+00 1940.0
6 TraesCS3A01G456100 chr3B 92.157 714 40 6 659 1362 739926397 739925690 0.000000e+00 994.0
7 TraesCS3A01G456100 chr3B 90.749 681 58 4 1356 2035 739923286 739922610 0.000000e+00 904.0
8 TraesCS3A01G456100 chr3B 85.413 617 59 9 1524 2133 739948460 739947868 1.930000e-171 612.0
9 TraesCS3A01G456100 chr3B 93.140 379 26 0 902 1280 739957745 739957367 9.160000e-155 556.0
10 TraesCS3A01G456100 chr3B 92.506 387 29 0 904 1290 739932967 739932581 3.300000e-154 555.0
11 TraesCS3A01G456100 chr3B 91.899 395 29 2 904 1298 739989298 739989689 1.530000e-152 549.0
12 TraesCS3A01G456100 chr3B 86.168 441 44 7 48 471 739927103 739926663 7.390000e-126 460.0
13 TraesCS3A01G456100 chr3B 82.413 489 59 11 1 471 739952470 739951991 4.540000e-108 401.0
14 TraesCS3A01G456100 chr3B 86.047 301 36 2 1634 1931 739989971 739990268 4.710000e-83 318.0
15 TraesCS3A01G456100 chr3B 84.691 307 46 1 1636 1942 739932254 739931949 3.660000e-79 305.0
16 TraesCS3A01G456100 chr3B 89.071 183 18 1 2184 2364 739943805 739943623 2.940000e-55 226.0
17 TraesCS3A01G456100 chr3B 85.833 120 12 3 270 387 739926358 739926242 3.960000e-24 122.0
18 TraesCS3A01G456100 chr3B 88.732 71 6 2 602 672 739926514 739926446 5.200000e-13 86.1
19 TraesCS3A01G456100 chr3D 91.420 1387 92 11 659 2035 557652827 557651458 0.000000e+00 1877.0
20 TraesCS3A01G456100 chr3D 92.911 395 28 0 902 1296 557699876 557699482 2.530000e-160 575.0
21 TraesCS3A01G456100 chr3D 89.963 269 26 1 1 268 557653482 557653214 2.160000e-91 346.0
22 TraesCS3A01G456100 chr3D 86.577 298 40 0 1634 1931 557711771 557712068 2.170000e-86 329.0
23 TraesCS3A01G456100 chr3D 85.668 307 43 1 1636 1942 557699177 557698872 3.640000e-84 322.0
24 TraesCS3A01G456100 chr3D 87.719 57 5 2 2393 2448 598881518 598881463 6.770000e-07 65.8
25 TraesCS3A01G456100 chr3D 95.122 41 2 0 2386 2426 613710164 613710124 6.770000e-07 65.8
26 TraesCS3A01G456100 chr3D 87.500 56 5 2 2395 2449 141401587 141401533 2.440000e-06 63.9
27 TraesCS3A01G456100 chr4B 89.522 544 24 4 2396 2925 657270425 657269901 0.000000e+00 658.0
28 TraesCS3A01G456100 chr7B 88.807 545 28 5 2395 2925 99803194 99802669 3.180000e-179 638.0
29 TraesCS3A01G456100 chr7B 90.566 53 4 1 521 573 444715659 444715608 5.230000e-08 69.4
30 TraesCS3A01G456100 chr2B 94.583 240 12 1 2686 2925 232279293 232279531 1.280000e-98 370.0
31 TraesCS3A01G456100 chr2A 94.583 240 12 1 2686 2925 187317847 187317609 1.280000e-98 370.0
32 TraesCS3A01G456100 chr2A 100.000 38 0 0 541 578 146749326 146749363 1.460000e-08 71.3
33 TraesCS3A01G456100 chr2A 97.500 40 1 0 2387 2426 746745430 746745391 5.230000e-08 69.4
34 TraesCS3A01G456100 chr5A 95.652 46 1 1 534 578 94080832 94080787 4.050000e-09 73.1
35 TraesCS3A01G456100 chr6A 89.655 58 3 2 524 578 529000292 529000349 1.460000e-08 71.3
36 TraesCS3A01G456100 chr6A 91.489 47 3 1 533 578 77775791 77775745 2.440000e-06 63.9
37 TraesCS3A01G456100 chr4D 97.561 41 1 0 2386 2426 443714143 443714183 1.460000e-08 71.3
38 TraesCS3A01G456100 chr7A 100.000 37 0 0 542 578 289141900 289141864 5.230000e-08 69.4
39 TraesCS3A01G456100 chr1A 100.000 36 0 0 543 578 139632576 139632541 1.880000e-07 67.6
40 TraesCS3A01G456100 chr6D 95.238 42 1 1 2385 2426 81043180 81043140 6.770000e-07 65.8
41 TraesCS3A01G456100 chr4A 97.436 39 0 1 535 573 472195591 472195628 6.770000e-07 65.8
42 TraesCS3A01G456100 chr1B 88.679 53 4 2 521 573 50558642 50558592 2.440000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G456100 chr3A 693442147 693445073 2926 True 5406.000000 5406 100.0000 1 2927 1 chr3A.!!$R2 2926
1 TraesCS3A01G456100 chr3A 693449439 693450426 987 True 396.500000 560 87.0920 904 1927 2 chr3A.!!$R3 1023
2 TraesCS3A01G456100 chr3B 739947868 739952470 4602 True 984.333333 1940 85.9950 1 2161 3 chr3B.!!$R5 2160
3 TraesCS3A01G456100 chr3B 739922610 739927103 4493 True 513.220000 994 88.7278 48 2035 5 chr3B.!!$R3 1987
4 TraesCS3A01G456100 chr3B 739989298 739990268 970 False 433.500000 549 88.9730 904 1931 2 chr3B.!!$F1 1027
5 TraesCS3A01G456100 chr3B 739931949 739932967 1018 True 430.000000 555 88.5985 904 1942 2 chr3B.!!$R4 1038
6 TraesCS3A01G456100 chr3D 557651458 557653482 2024 True 1111.500000 1877 90.6915 1 2035 2 chr3D.!!$R4 2034
7 TraesCS3A01G456100 chr3D 557698872 557699876 1004 True 448.500000 575 89.2895 902 1942 2 chr3D.!!$R5 1040
8 TraesCS3A01G456100 chr4B 657269901 657270425 524 True 658.000000 658 89.5220 2396 2925 1 chr4B.!!$R1 529
9 TraesCS3A01G456100 chr7B 99802669 99803194 525 True 638.000000 638 88.8070 2395 2925 1 chr7B.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 476 1.157585 GGTGAGGAAAGAAAGCGACC 58.842 55.0 0.0 0.0 0.0 4.79 F
1005 1171 0.322456 AAAAGCTGGTGCCGATGCTA 60.322 50.0 0.0 0.0 40.8 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 4532 0.107993 TTGGCGATCCTGAGCAGAAG 60.108 55.0 0.0 0.0 34.54 2.85 R
2231 7265 0.179056 AATAGCAACGGGGTGATCGG 60.179 55.0 0.0 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.006780 ACATGCATGTGACACTAAGACA 57.993 40.909 30.92 0.00 40.03 3.41
50 52 2.890808 TGTCGTCCATATGAAGAGCC 57.109 50.000 3.65 0.00 31.85 4.70
108 110 7.819900 GGAGCATAGGACTATAATAACACCTTG 59.180 40.741 0.00 0.00 0.00 3.61
137 139 2.180204 ACGACACACCTGCAAGCAC 61.180 57.895 0.00 0.00 0.00 4.40
142 144 2.203394 CACCTGCAAGCACCACCT 60.203 61.111 0.00 0.00 0.00 4.00
146 148 3.535629 CTGCAAGCACCACCTCCGA 62.536 63.158 0.00 0.00 0.00 4.55
194 196 4.018688 ACTTTTACTTATCTCCCACACCCC 60.019 45.833 0.00 0.00 0.00 4.95
249 251 3.819652 TTGGGGCATGGGATCGGG 61.820 66.667 0.00 0.00 0.00 5.14
374 379 6.438259 TCACCTGAAAAACGTTAATTCACA 57.562 33.333 19.69 8.18 0.00 3.58
386 391 6.488817 ACGTTAATTCACACAGGTTTGTTAC 58.511 36.000 0.00 0.00 34.62 2.50
396 415 2.811431 CAGGTTTGTTACGATTGGCTCA 59.189 45.455 0.00 0.00 0.00 4.26
416 436 5.259632 CTCAAGGAGGAAATGAATCCAGTT 58.740 41.667 0.00 0.00 42.27 3.16
431 451 3.486383 TCCAGTTCCTTTGGATGTTGAC 58.514 45.455 0.00 0.00 39.74 3.18
452 472 4.336280 ACCTAATGGTGAGGAAAGAAAGC 58.664 43.478 0.00 0.00 46.51 3.51
456 476 1.157585 GGTGAGGAAAGAAAGCGACC 58.842 55.000 0.00 0.00 0.00 4.79
471 491 3.821841 AGCGACCGATTGAAATGTTTTC 58.178 40.909 0.00 0.00 0.00 2.29
472 492 2.588106 GCGACCGATTGAAATGTTTTCG 59.412 45.455 0.00 0.00 0.00 3.46
486 506 3.328237 GTTTTCGGAAACAAAGAGCGA 57.672 42.857 14.60 0.00 43.65 4.93
487 507 3.033873 GTTTTCGGAAACAAAGAGCGAC 58.966 45.455 14.60 0.00 43.65 5.19
488 508 2.234300 TTCGGAAACAAAGAGCGACT 57.766 45.000 0.00 0.00 0.00 4.18
489 509 3.374220 TTCGGAAACAAAGAGCGACTA 57.626 42.857 0.00 0.00 0.00 2.59
490 510 3.587797 TCGGAAACAAAGAGCGACTAT 57.412 42.857 0.00 0.00 0.00 2.12
491 511 3.921677 TCGGAAACAAAGAGCGACTATT 58.078 40.909 0.00 0.00 0.00 1.73
492 512 4.312443 TCGGAAACAAAGAGCGACTATTT 58.688 39.130 0.00 0.00 0.00 1.40
493 513 5.472148 TCGGAAACAAAGAGCGACTATTTA 58.528 37.500 0.00 0.00 0.00 1.40
494 514 5.927689 TCGGAAACAAAGAGCGACTATTTAA 59.072 36.000 0.00 0.00 0.00 1.52
495 515 6.424509 TCGGAAACAAAGAGCGACTATTTAAA 59.575 34.615 0.00 0.00 0.00 1.52
496 516 7.041916 TCGGAAACAAAGAGCGACTATTTAAAA 60.042 33.333 0.00 0.00 0.00 1.52
497 517 7.588488 CGGAAACAAAGAGCGACTATTTAAAAA 59.412 33.333 0.00 0.00 0.00 1.94
498 518 8.902735 GGAAACAAAGAGCGACTATTTAAAAAG 58.097 33.333 0.00 0.00 0.00 2.27
499 519 8.797266 AAACAAAGAGCGACTATTTAAAAAGG 57.203 30.769 0.00 0.00 0.00 3.11
500 520 6.909909 ACAAAGAGCGACTATTTAAAAAGGG 58.090 36.000 0.00 0.00 0.00 3.95
501 521 6.713450 ACAAAGAGCGACTATTTAAAAAGGGA 59.287 34.615 0.00 0.00 0.00 4.20
554 591 5.326283 AAAAAGACTCTTAGGCCTCCTTT 57.674 39.130 9.68 7.87 34.61 3.11
555 592 3.990959 AAGACTCTTAGGCCTCCTTTG 57.009 47.619 9.68 0.00 34.61 2.77
556 593 2.192263 AGACTCTTAGGCCTCCTTTGG 58.808 52.381 9.68 0.00 34.61 3.28
557 594 1.909986 GACTCTTAGGCCTCCTTTGGT 59.090 52.381 9.68 1.59 34.61 3.67
558 595 2.306219 GACTCTTAGGCCTCCTTTGGTT 59.694 50.000 9.68 0.00 34.61 3.67
559 596 2.306219 ACTCTTAGGCCTCCTTTGGTTC 59.694 50.000 9.68 0.00 34.61 3.62
560 597 2.305927 CTCTTAGGCCTCCTTTGGTTCA 59.694 50.000 9.68 0.00 34.61 3.18
561 598 2.919602 TCTTAGGCCTCCTTTGGTTCAT 59.080 45.455 9.68 0.00 34.61 2.57
562 599 4.108570 TCTTAGGCCTCCTTTGGTTCATA 58.891 43.478 9.68 0.00 34.61 2.15
563 600 4.164221 TCTTAGGCCTCCTTTGGTTCATAG 59.836 45.833 9.68 0.00 34.61 2.23
564 601 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
565 602 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
566 603 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
567 604 3.394606 GGCCTCCTTTGGTTCATAGGATA 59.605 47.826 0.00 0.00 39.94 2.59
571 608 6.634955 GCCTCCTTTGGTTCATAGGATAGAAA 60.635 42.308 7.38 0.00 39.94 2.52
576 613 8.408601 CCTTTGGTTCATAGGATAGAAATGTTG 58.591 37.037 0.00 0.00 35.14 3.33
586 623 5.716228 AGGATAGAAATGTTGTTTGCCATGA 59.284 36.000 0.00 0.00 0.00 3.07
587 624 6.038356 GGATAGAAATGTTGTTTGCCATGAG 58.962 40.000 0.00 0.00 0.00 2.90
588 625 3.656559 AGAAATGTTGTTTGCCATGAGC 58.343 40.909 0.00 0.00 44.14 4.26
590 627 1.340088 ATGTTGTTTGCCATGAGCCA 58.660 45.000 0.00 0.00 42.71 4.75
592 629 1.693062 TGTTGTTTGCCATGAGCCAAT 59.307 42.857 0.00 0.00 42.71 3.16
593 630 2.070783 GTTGTTTGCCATGAGCCAATG 58.929 47.619 0.00 0.00 42.71 2.82
629 723 4.932146 TCTGAAAACCACTTGCTTAAAGC 58.068 39.130 0.00 0.00 42.82 3.51
636 730 3.054878 CCACTTGCTTAAAGCTGCAAAG 58.945 45.455 10.07 3.78 46.55 2.77
644 738 6.748132 TGCTTAAAGCTGCAAAGTATTCTTT 58.252 32.000 1.02 0.00 42.97 2.52
645 740 7.881142 TGCTTAAAGCTGCAAAGTATTCTTTA 58.119 30.769 1.02 0.00 42.97 1.85
652 747 7.381323 AGCTGCAAAGTATTCTTTAGCAAAAT 58.619 30.769 17.00 7.76 42.76 1.82
675 831 9.590451 AAATATCATAAGAAGGCAACAACATTG 57.410 29.630 0.00 0.00 41.41 2.82
738 897 6.605594 GGATATGGACAAAATTGTTAGGTGGA 59.394 38.462 0.00 0.00 42.43 4.02
743 902 5.242838 GGACAAAATTGTTAGGTGGACATGA 59.757 40.000 0.00 0.00 42.43 3.07
763 922 1.555075 AGTGGGAATAAGAGCTGCGAA 59.445 47.619 0.00 0.00 0.00 4.70
858 1024 5.221009 GGCTACTACATAGTGTACTGGTGAC 60.221 48.000 1.66 0.00 37.10 3.67
886 1052 1.869767 CCTCGCCAAAGATATCTGCAC 59.130 52.381 5.86 0.00 0.00 4.57
1005 1171 0.322456 AAAAGCTGGTGCCGATGCTA 60.322 50.000 0.00 0.00 40.80 3.49
1448 4063 1.279846 TCATGGACAGCAAGAGCATGA 59.720 47.619 0.00 0.00 45.49 3.07
1582 4198 9.985730 AAAGAAAATCTTTGCTATTGATGTGAA 57.014 25.926 4.64 0.00 44.34 3.18
1583 4199 8.976986 AGAAAATCTTTGCTATTGATGTGAAC 57.023 30.769 0.00 0.00 0.00 3.18
1596 4212 6.951062 TTGATGTGAACTATTGAACCAACA 57.049 33.333 0.00 0.00 0.00 3.33
1604 4220 5.923733 ACTATTGAACCAACAAACAACCA 57.076 34.783 0.00 0.00 33.44 3.67
1614 4234 5.533528 ACCAACAAACAACCATTCTAGTACC 59.466 40.000 0.00 0.00 0.00 3.34
1625 4245 7.914427 ACCATTCTAGTACCATCATACTCAA 57.086 36.000 0.00 0.00 36.74 3.02
1655 4290 1.609501 AGGACCTGACGCTGGCTAA 60.610 57.895 0.00 0.00 0.00 3.09
1728 4363 4.724602 GCTCTGCTCACCGACGCA 62.725 66.667 0.00 0.00 34.54 5.24
1760 4395 1.145803 GTGAAGAAGGTGTACGTGGC 58.854 55.000 0.00 0.00 0.00 5.01
1761 4396 0.753867 TGAAGAAGGTGTACGTGGCA 59.246 50.000 0.00 0.00 0.00 4.92
1812 4447 2.125552 CAGCGCTGGATGGTCGAA 60.126 61.111 29.88 0.00 0.00 3.71
1894 4532 0.107459 GCCCAGGGAACTCTGTGATC 60.107 60.000 10.89 0.00 40.21 2.92
1920 4558 2.271800 CTCAGGATCGCCAACAAGTAC 58.728 52.381 0.00 0.00 36.29 2.73
1976 4614 1.927487 AGCATGCCAGACCAAATTCA 58.073 45.000 15.66 0.00 0.00 2.57
2018 7047 8.934023 AAAGAATTCCAAAATCTAGTACACCA 57.066 30.769 0.65 0.00 0.00 4.17
2035 7064 8.114331 AGTACACCATACGATCCGAATTAATA 57.886 34.615 0.00 0.00 0.00 0.98
2036 7065 8.025445 AGTACACCATACGATCCGAATTAATAC 58.975 37.037 0.00 0.00 0.00 1.89
2042 7071 4.923893 ACGATCCGAATTAATACACACGA 58.076 39.130 0.00 0.00 0.00 4.35
2055 7084 9.692749 ATTAATACACACGACATTGTATAGAGG 57.307 33.333 0.00 0.00 37.84 3.69
2058 7087 6.519679 ACACACGACATTGTATAGAGGTTA 57.480 37.500 0.00 0.00 0.00 2.85
2062 7091 6.032094 CACGACATTGTATAGAGGTTACGTT 58.968 40.000 0.00 0.00 0.00 3.99
2072 7101 9.454585 TGTATAGAGGTTACGTTCATTAATTCG 57.545 33.333 0.00 0.00 0.00 3.34
2076 7110 7.719483 AGAGGTTACGTTCATTAATTCGGATA 58.281 34.615 0.00 0.00 0.00 2.59
2085 7119 4.223032 TCATTAATTCGGATAGGAGGGAGC 59.777 45.833 0.00 0.00 0.00 4.70
2092 7126 2.170607 CGGATAGGAGGGAGCAAAGAAA 59.829 50.000 0.00 0.00 0.00 2.52
2093 7127 3.181450 CGGATAGGAGGGAGCAAAGAAAT 60.181 47.826 0.00 0.00 0.00 2.17
2094 7128 4.687219 CGGATAGGAGGGAGCAAAGAAATT 60.687 45.833 0.00 0.00 0.00 1.82
2095 7129 5.204292 GGATAGGAGGGAGCAAAGAAATTT 58.796 41.667 0.00 0.00 0.00 1.82
2096 7130 5.068329 GGATAGGAGGGAGCAAAGAAATTTG 59.932 44.000 0.00 0.00 35.15 2.32
2097 7131 3.849527 AGGAGGGAGCAAAGAAATTTGT 58.150 40.909 0.00 0.00 34.56 2.83
2098 7132 4.998051 AGGAGGGAGCAAAGAAATTTGTA 58.002 39.130 0.00 0.00 34.56 2.41
2110 7144 6.633668 AAGAAATTTGTAGACTGATCGACG 57.366 37.500 0.00 0.00 33.43 5.12
2118 7152 1.204704 AGACTGATCGACGAATGCCAA 59.795 47.619 0.00 0.00 0.00 4.52
2122 7156 1.731709 TGATCGACGAATGCCAAACTG 59.268 47.619 0.00 0.00 0.00 3.16
2127 7161 0.238289 ACGAATGCCAAACTGAAGCG 59.762 50.000 0.00 0.00 0.00 4.68
2129 7163 1.334960 CGAATGCCAAACTGAAGCGTT 60.335 47.619 0.00 0.00 38.41 4.84
2133 7167 0.109735 GCCAAACTGAAGCGTTAGGC 60.110 55.000 0.00 0.00 44.05 3.93
2145 7179 3.515330 GCGTTAGGCTAAGTACCTTCA 57.485 47.619 7.33 0.00 38.81 3.02
2146 7180 3.853475 GCGTTAGGCTAAGTACCTTCAA 58.147 45.455 7.33 0.00 38.81 2.69
2147 7181 3.864003 GCGTTAGGCTAAGTACCTTCAAG 59.136 47.826 7.33 0.00 38.81 3.02
2148 7182 4.430908 CGTTAGGCTAAGTACCTTCAAGG 58.569 47.826 7.33 0.22 42.49 3.61
2149 7183 4.159135 CGTTAGGCTAAGTACCTTCAAGGA 59.841 45.833 11.59 0.00 37.67 3.36
2150 7184 5.662456 GTTAGGCTAAGTACCTTCAAGGAG 58.338 45.833 11.59 0.00 37.67 3.69
2151 7185 3.792515 AGGCTAAGTACCTTCAAGGAGT 58.207 45.455 11.59 0.00 37.67 3.85
2152 7186 4.168883 AGGCTAAGTACCTTCAAGGAGTT 58.831 43.478 11.59 5.87 37.67 3.01
2153 7187 4.223255 AGGCTAAGTACCTTCAAGGAGTTC 59.777 45.833 11.59 0.00 37.67 3.01
2154 7188 4.020485 GGCTAAGTACCTTCAAGGAGTTCA 60.020 45.833 11.59 0.00 37.67 3.18
2155 7189 4.930405 GCTAAGTACCTTCAAGGAGTTCAC 59.070 45.833 11.59 0.00 37.67 3.18
2156 7190 3.662247 AGTACCTTCAAGGAGTTCACG 57.338 47.619 11.59 0.00 37.67 4.35
2157 7191 2.299297 AGTACCTTCAAGGAGTTCACGG 59.701 50.000 11.59 0.00 37.67 4.94
2158 7192 1.129058 ACCTTCAAGGAGTTCACGGT 58.871 50.000 11.59 0.00 37.67 4.83
2159 7193 1.489230 ACCTTCAAGGAGTTCACGGTT 59.511 47.619 11.59 0.00 37.67 4.44
2160 7194 2.701951 ACCTTCAAGGAGTTCACGGTTA 59.298 45.455 11.59 0.00 37.67 2.85
2161 7195 3.326880 ACCTTCAAGGAGTTCACGGTTAT 59.673 43.478 11.59 0.00 37.67 1.89
2162 7196 3.933332 CCTTCAAGGAGTTCACGGTTATC 59.067 47.826 0.00 0.00 37.67 1.75
2163 7197 3.604875 TCAAGGAGTTCACGGTTATCC 57.395 47.619 0.00 0.00 0.00 2.59
2164 7198 2.235402 TCAAGGAGTTCACGGTTATCCC 59.765 50.000 0.00 0.00 0.00 3.85
2176 7210 3.835378 GGTTATCCCGCGAAAAGAAAA 57.165 42.857 8.23 0.00 0.00 2.29
2177 7211 3.754955 GGTTATCCCGCGAAAAGAAAAG 58.245 45.455 8.23 0.00 0.00 2.27
2178 7212 3.427098 GGTTATCCCGCGAAAAGAAAAGG 60.427 47.826 8.23 0.00 0.00 3.11
2179 7213 2.194201 ATCCCGCGAAAAGAAAAGGA 57.806 45.000 8.23 1.75 0.00 3.36
2180 7214 1.519408 TCCCGCGAAAAGAAAAGGAG 58.481 50.000 8.23 0.00 0.00 3.69
2181 7215 1.202722 TCCCGCGAAAAGAAAAGGAGT 60.203 47.619 8.23 0.00 0.00 3.85
2182 7216 1.607148 CCCGCGAAAAGAAAAGGAGTT 59.393 47.619 8.23 0.00 0.00 3.01
2183 7217 2.350484 CCCGCGAAAAGAAAAGGAGTTC 60.350 50.000 8.23 0.00 0.00 3.01
2184 7218 2.289547 CCGCGAAAAGAAAAGGAGTTCA 59.710 45.455 8.23 0.00 0.00 3.18
2185 7219 3.289076 CGCGAAAAGAAAAGGAGTTCAC 58.711 45.455 0.00 0.00 0.00 3.18
2186 7220 3.289076 GCGAAAAGAAAAGGAGTTCACG 58.711 45.455 0.00 0.00 0.00 4.35
2187 7221 3.848554 GCGAAAAGAAAAGGAGTTCACGG 60.849 47.826 0.00 0.00 0.00 4.94
2188 7222 3.311596 CGAAAAGAAAAGGAGTTCACGGT 59.688 43.478 0.00 0.00 0.00 4.83
2189 7223 4.201881 CGAAAAGAAAAGGAGTTCACGGTT 60.202 41.667 0.00 0.00 0.00 4.44
2190 7224 5.006941 CGAAAAGAAAAGGAGTTCACGGTTA 59.993 40.000 0.00 0.00 0.00 2.85
2191 7225 6.457257 CGAAAAGAAAAGGAGTTCACGGTTAA 60.457 38.462 0.00 0.00 0.00 2.01
2192 7226 6.762702 AAAGAAAAGGAGTTCACGGTTAAA 57.237 33.333 0.00 0.00 0.00 1.52
2193 7227 6.954487 AAGAAAAGGAGTTCACGGTTAAAT 57.046 33.333 0.00 0.00 0.00 1.40
2194 7228 6.954487 AGAAAAGGAGTTCACGGTTAAATT 57.046 33.333 0.00 0.00 0.00 1.82
2195 7229 6.735130 AGAAAAGGAGTTCACGGTTAAATTG 58.265 36.000 0.00 0.00 0.00 2.32
2196 7230 6.320418 AGAAAAGGAGTTCACGGTTAAATTGT 59.680 34.615 0.00 0.00 0.00 2.71
2197 7231 6.459670 AAAGGAGTTCACGGTTAAATTGTT 57.540 33.333 0.00 0.00 0.00 2.83
2198 7232 7.571080 AAAGGAGTTCACGGTTAAATTGTTA 57.429 32.000 0.00 0.00 0.00 2.41
2199 7233 6.796705 AGGAGTTCACGGTTAAATTGTTAG 57.203 37.500 0.00 0.00 0.00 2.34
2200 7234 6.293698 AGGAGTTCACGGTTAAATTGTTAGT 58.706 36.000 0.00 0.00 0.00 2.24
2201 7235 6.204108 AGGAGTTCACGGTTAAATTGTTAGTG 59.796 38.462 0.00 0.00 0.00 2.74
2202 7236 6.308371 AGTTCACGGTTAAATTGTTAGTGG 57.692 37.500 0.00 0.00 0.00 4.00
2203 7237 5.824097 AGTTCACGGTTAAATTGTTAGTGGT 59.176 36.000 0.00 0.00 0.00 4.16
2204 7238 6.991531 AGTTCACGGTTAAATTGTTAGTGGTA 59.008 34.615 0.00 0.00 0.00 3.25
2205 7239 7.172019 AGTTCACGGTTAAATTGTTAGTGGTAG 59.828 37.037 0.00 0.00 0.00 3.18
2206 7240 5.933463 TCACGGTTAAATTGTTAGTGGTAGG 59.067 40.000 0.00 0.00 0.00 3.18
2207 7241 5.702209 CACGGTTAAATTGTTAGTGGTAGGT 59.298 40.000 0.00 0.00 0.00 3.08
2208 7242 6.205270 CACGGTTAAATTGTTAGTGGTAGGTT 59.795 38.462 0.00 0.00 0.00 3.50
2209 7243 7.387397 CACGGTTAAATTGTTAGTGGTAGGTTA 59.613 37.037 0.00 0.00 0.00 2.85
2210 7244 7.936301 ACGGTTAAATTGTTAGTGGTAGGTTAA 59.064 33.333 0.00 0.00 0.00 2.01
2211 7245 8.782144 CGGTTAAATTGTTAGTGGTAGGTTAAA 58.218 33.333 0.00 0.00 0.00 1.52
2219 7253 7.822658 TGTTAGTGGTAGGTTAAATTGATTGC 58.177 34.615 0.00 0.00 0.00 3.56
2220 7254 7.668052 TGTTAGTGGTAGGTTAAATTGATTGCT 59.332 33.333 0.00 0.00 0.00 3.91
2221 7255 6.515272 AGTGGTAGGTTAAATTGATTGCTG 57.485 37.500 0.00 0.00 0.00 4.41
2222 7256 6.010219 AGTGGTAGGTTAAATTGATTGCTGT 58.990 36.000 0.00 0.00 0.00 4.40
2223 7257 6.493458 AGTGGTAGGTTAAATTGATTGCTGTT 59.507 34.615 0.00 0.00 0.00 3.16
2224 7258 7.668052 AGTGGTAGGTTAAATTGATTGCTGTTA 59.332 33.333 0.00 0.00 0.00 2.41
2225 7259 7.968405 GTGGTAGGTTAAATTGATTGCTGTTAG 59.032 37.037 0.00 0.00 0.00 2.34
2226 7260 7.885922 TGGTAGGTTAAATTGATTGCTGTTAGA 59.114 33.333 0.00 0.00 0.00 2.10
2227 7261 8.736244 GGTAGGTTAAATTGATTGCTGTTAGAA 58.264 33.333 0.00 0.00 0.00 2.10
2228 7262 9.774742 GTAGGTTAAATTGATTGCTGTTAGAAG 57.225 33.333 0.00 0.00 0.00 2.85
2229 7263 8.635765 AGGTTAAATTGATTGCTGTTAGAAGA 57.364 30.769 0.00 0.00 0.00 2.87
2230 7264 8.515414 AGGTTAAATTGATTGCTGTTAGAAGAC 58.485 33.333 0.00 0.00 0.00 3.01
2231 7265 7.755373 GGTTAAATTGATTGCTGTTAGAAGACC 59.245 37.037 0.00 0.00 0.00 3.85
2232 7266 5.904362 AATTGATTGCTGTTAGAAGACCC 57.096 39.130 0.00 0.00 0.00 4.46
2233 7267 2.972625 TGATTGCTGTTAGAAGACCCG 58.027 47.619 0.00 0.00 0.00 5.28
2234 7268 2.565391 TGATTGCTGTTAGAAGACCCGA 59.435 45.455 0.00 0.00 0.00 5.14
2235 7269 3.197766 TGATTGCTGTTAGAAGACCCGAT 59.802 43.478 0.00 0.00 0.00 4.18
2236 7270 2.961526 TGCTGTTAGAAGACCCGATC 57.038 50.000 0.00 0.00 0.00 3.69
2237 7271 2.176045 TGCTGTTAGAAGACCCGATCA 58.824 47.619 0.00 0.00 0.00 2.92
2238 7272 2.094182 TGCTGTTAGAAGACCCGATCAC 60.094 50.000 0.00 0.00 0.00 3.06
2239 7273 2.738964 GCTGTTAGAAGACCCGATCACC 60.739 54.545 0.00 0.00 0.00 4.02
2240 7274 1.829222 TGTTAGAAGACCCGATCACCC 59.171 52.381 0.00 0.00 0.00 4.61
2241 7275 1.138464 GTTAGAAGACCCGATCACCCC 59.862 57.143 0.00 0.00 0.00 4.95
2242 7276 0.754217 TAGAAGACCCGATCACCCCG 60.754 60.000 0.00 0.00 0.00 5.73
2243 7277 2.284405 AAGACCCGATCACCCCGT 60.284 61.111 0.00 0.00 0.00 5.28
2244 7278 1.896122 GAAGACCCGATCACCCCGTT 61.896 60.000 0.00 0.00 0.00 4.44
2245 7279 2.125269 GACCCGATCACCCCGTTG 60.125 66.667 0.00 0.00 0.00 4.10
2246 7280 4.404098 ACCCGATCACCCCGTTGC 62.404 66.667 0.00 0.00 0.00 4.17
2247 7281 4.096003 CCCGATCACCCCGTTGCT 62.096 66.667 0.00 0.00 0.00 3.91
2248 7282 2.727392 CCCGATCACCCCGTTGCTA 61.727 63.158 0.00 0.00 0.00 3.49
2249 7283 1.445942 CCGATCACCCCGTTGCTAT 59.554 57.895 0.00 0.00 0.00 2.97
2250 7284 0.179056 CCGATCACCCCGTTGCTATT 60.179 55.000 0.00 0.00 0.00 1.73
2251 7285 1.663695 CGATCACCCCGTTGCTATTT 58.336 50.000 0.00 0.00 0.00 1.40
2252 7286 2.014128 CGATCACCCCGTTGCTATTTT 58.986 47.619 0.00 0.00 0.00 1.82
2253 7287 2.422127 CGATCACCCCGTTGCTATTTTT 59.578 45.455 0.00 0.00 0.00 1.94
2254 7288 3.486875 CGATCACCCCGTTGCTATTTTTC 60.487 47.826 0.00 0.00 0.00 2.29
2255 7289 2.164338 TCACCCCGTTGCTATTTTTCC 58.836 47.619 0.00 0.00 0.00 3.13
2256 7290 1.203758 CACCCCGTTGCTATTTTTCCC 59.796 52.381 0.00 0.00 0.00 3.97
2257 7291 0.454196 CCCCGTTGCTATTTTTCCCG 59.546 55.000 0.00 0.00 0.00 5.14
2258 7292 1.455248 CCCGTTGCTATTTTTCCCGA 58.545 50.000 0.00 0.00 0.00 5.14
2259 7293 1.131693 CCCGTTGCTATTTTTCCCGAC 59.868 52.381 0.00 0.00 0.00 4.79
2260 7294 2.081462 CCGTTGCTATTTTTCCCGACT 58.919 47.619 0.00 0.00 0.00 4.18
2261 7295 2.486592 CCGTTGCTATTTTTCCCGACTT 59.513 45.455 0.00 0.00 0.00 3.01
2262 7296 3.057806 CCGTTGCTATTTTTCCCGACTTT 60.058 43.478 0.00 0.00 0.00 2.66
2263 7297 4.154556 CCGTTGCTATTTTTCCCGACTTTA 59.845 41.667 0.00 0.00 0.00 1.85
2264 7298 5.084055 CGTTGCTATTTTTCCCGACTTTAC 58.916 41.667 0.00 0.00 0.00 2.01
2265 7299 5.396484 GTTGCTATTTTTCCCGACTTTACC 58.604 41.667 0.00 0.00 0.00 2.85
2266 7300 4.653868 TGCTATTTTTCCCGACTTTACCA 58.346 39.130 0.00 0.00 0.00 3.25
2267 7301 5.258051 TGCTATTTTTCCCGACTTTACCAT 58.742 37.500 0.00 0.00 0.00 3.55
2268 7302 6.416415 TGCTATTTTTCCCGACTTTACCATA 58.584 36.000 0.00 0.00 0.00 2.74
2269 7303 7.057894 TGCTATTTTTCCCGACTTTACCATAT 58.942 34.615 0.00 0.00 0.00 1.78
2270 7304 8.212312 TGCTATTTTTCCCGACTTTACCATATA 58.788 33.333 0.00 0.00 0.00 0.86
2271 7305 9.227777 GCTATTTTTCCCGACTTTACCATATAT 57.772 33.333 0.00 0.00 0.00 0.86
2353 7387 9.857656 ATCTACACATCATATTGATTCAAACCT 57.142 29.630 2.68 0.00 34.28 3.50
2354 7388 9.685276 TCTACACATCATATTGATTCAAACCTT 57.315 29.630 2.68 0.00 34.28 3.50
2355 7389 9.726232 CTACACATCATATTGATTCAAACCTTG 57.274 33.333 2.68 1.54 34.28 3.61
2356 7390 8.125978 ACACATCATATTGATTCAAACCTTGT 57.874 30.769 2.68 2.11 34.28 3.16
2357 7391 8.587608 ACACATCATATTGATTCAAACCTTGTT 58.412 29.630 2.68 0.00 34.28 2.83
2358 7392 8.865978 CACATCATATTGATTCAAACCTTGTTG 58.134 33.333 2.68 6.88 34.28 3.33
2359 7393 8.805175 ACATCATATTGATTCAAACCTTGTTGA 58.195 29.630 2.68 0.71 34.28 3.18
2360 7394 9.811995 CATCATATTGATTCAAACCTTGTTGAT 57.188 29.630 2.68 2.75 37.36 2.57
2362 7396 9.859427 TCATATTGATTCAAACCTTGTTGATTC 57.141 29.630 2.68 0.00 37.36 2.52
2363 7397 9.642327 CATATTGATTCAAACCTTGTTGATTCA 57.358 29.630 2.68 7.90 42.10 2.57
2365 7399 7.769272 TTGATTCAAACCTTGTTGATTCAAC 57.231 32.000 20.27 20.27 44.67 3.18
2366 7400 6.279882 TGATTCAAACCTTGTTGATTCAACC 58.720 36.000 23.22 8.96 42.96 3.77
2367 7401 4.664150 TCAAACCTTGTTGATTCAACCC 57.336 40.909 23.22 3.89 42.96 4.11
2368 7402 3.386402 TCAAACCTTGTTGATTCAACCCC 59.614 43.478 23.22 3.22 42.96 4.95
2369 7403 2.009681 ACCTTGTTGATTCAACCCCC 57.990 50.000 23.22 2.88 42.96 5.40
2465 7499 8.859090 CCATGTATTATGTGAATATTGTTGGGT 58.141 33.333 0.00 0.00 0.00 4.51
2552 7586 4.637534 AGTCATGTCTAATGTGTGAATGCC 59.362 41.667 0.00 0.00 0.00 4.40
2561 7595 5.670792 AATGTGTGAATGCCAAATCATCT 57.329 34.783 0.00 0.00 0.00 2.90
2665 7713 4.785301 TCCTATTGAAAGGAGAAGGCATG 58.215 43.478 0.00 0.00 40.86 4.06
2669 7717 4.581309 TTGAAAGGAGAAGGCATGATCT 57.419 40.909 0.00 0.00 0.00 2.75
2670 7718 4.148128 TGAAAGGAGAAGGCATGATCTC 57.852 45.455 12.60 12.60 41.08 2.75
2683 7731 4.932200 GGCATGATCTCCTCCTAATTTACG 59.068 45.833 0.00 0.00 0.00 3.18
2684 7732 5.511545 GGCATGATCTCCTCCTAATTTACGT 60.512 44.000 0.00 0.00 0.00 3.57
2716 7764 6.587273 ACTCAGCTTCTCATAATTTACCTCC 58.413 40.000 0.00 0.00 0.00 4.30
2764 7812 0.630673 TAGGTCTGGGGCAATTGCAT 59.369 50.000 30.32 8.85 44.36 3.96
2796 7844 6.704289 TTCATATTGAAAGGAGAAGGCATG 57.296 37.500 0.00 0.00 32.71 4.06
2800 7848 4.581309 TTGAAAGGAGAAGGCATGATCT 57.419 40.909 0.00 0.00 0.00 2.75
2847 7895 5.931146 ACTCAGCTTGTCTACTGATGAAAAG 59.069 40.000 0.00 0.00 41.84 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.934625 GGCTCTTCATATGGACGACAAATAT 59.065 40.000 2.13 0.00 0.00 1.28
36 37 4.155709 CCTACTCTGGCTCTTCATATGGA 58.844 47.826 2.13 0.00 0.00 3.41
50 52 5.414765 GGTTAATGGTGAAAACCCTACTCTG 59.585 44.000 0.00 0.00 37.31 3.35
108 110 1.865340 GGTGTGTCGTGTTCCTTTCTC 59.135 52.381 0.00 0.00 0.00 2.87
146 148 1.956297 TCGGTGTTGGACGATTTTGT 58.044 45.000 0.00 0.00 33.69 2.83
194 196 1.811965 TCATCGATGTTGCCTTGTTGG 59.188 47.619 24.09 0.00 39.35 3.77
224 226 1.386155 CCATGCCCCAACCCAACTA 59.614 57.895 0.00 0.00 0.00 2.24
249 251 0.107165 GGCACATAGGAGACCAACCC 60.107 60.000 0.00 0.00 0.00 4.11
297 299 7.399765 TCCAATTCATGTCCACCTCATAATTTT 59.600 33.333 0.00 0.00 0.00 1.82
303 305 4.320546 TTCCAATTCATGTCCACCTCAT 57.679 40.909 0.00 0.00 0.00 2.90
318 321 1.209019 AGTCGCAGCTCTGATTCCAAT 59.791 47.619 0.29 0.00 0.00 3.16
374 379 2.812011 GAGCCAATCGTAACAAACCTGT 59.188 45.455 0.00 0.00 37.39 4.00
386 391 2.113860 TTTCCTCCTTGAGCCAATCG 57.886 50.000 0.00 0.00 0.00 3.34
396 415 4.604156 GGAACTGGATTCATTTCCTCCTT 58.396 43.478 14.51 0.00 44.52 3.36
416 436 4.599041 CCATTAGGTCAACATCCAAAGGA 58.401 43.478 0.00 0.00 35.55 3.36
431 451 3.375299 CGCTTTCTTTCCTCACCATTAGG 59.625 47.826 0.00 0.00 42.21 2.69
440 460 2.011540 ATCGGTCGCTTTCTTTCCTC 57.988 50.000 0.00 0.00 0.00 3.71
452 472 3.160545 CCGAAAACATTTCAATCGGTCG 58.839 45.455 4.45 0.00 45.96 4.79
471 491 4.663636 AAATAGTCGCTCTTTGTTTCCG 57.336 40.909 0.00 0.00 0.00 4.30
472 492 8.791355 TTTTTAAATAGTCGCTCTTTGTTTCC 57.209 30.769 0.00 0.00 0.00 3.13
473 493 8.902735 CCTTTTTAAATAGTCGCTCTTTGTTTC 58.097 33.333 5.16 0.00 0.00 2.78
475 495 7.229907 TCCCTTTTTAAATAGTCGCTCTTTGTT 59.770 33.333 5.16 0.00 0.00 2.83
476 496 6.713450 TCCCTTTTTAAATAGTCGCTCTTTGT 59.287 34.615 5.16 0.00 0.00 2.83
479 499 8.890718 GTTATCCCTTTTTAAATAGTCGCTCTT 58.109 33.333 5.16 0.00 0.00 2.85
480 500 7.498239 GGTTATCCCTTTTTAAATAGTCGCTCT 59.502 37.037 5.16 0.00 0.00 4.09
481 501 7.281549 TGGTTATCCCTTTTTAAATAGTCGCTC 59.718 37.037 5.16 0.00 0.00 5.03
482 502 7.066645 GTGGTTATCCCTTTTTAAATAGTCGCT 59.933 37.037 5.16 0.00 0.00 4.93
483 503 7.066645 AGTGGTTATCCCTTTTTAAATAGTCGC 59.933 37.037 5.16 0.00 0.00 5.19
484 504 8.502105 AGTGGTTATCCCTTTTTAAATAGTCG 57.498 34.615 5.16 0.00 0.00 4.18
535 572 2.573915 CCAAAGGAGGCCTAAGAGTCTT 59.426 50.000 4.42 10.87 31.13 3.01
545 582 1.564348 TCCTATGAACCAAAGGAGGCC 59.436 52.381 0.00 0.00 34.46 5.19
546 583 3.584733 ATCCTATGAACCAAAGGAGGC 57.415 47.619 0.00 0.00 42.53 4.70
547 584 6.500589 TTCTATCCTATGAACCAAAGGAGG 57.499 41.667 0.00 0.00 42.53 4.30
549 586 7.872138 ACATTTCTATCCTATGAACCAAAGGA 58.128 34.615 0.00 0.00 43.38 3.36
550 587 8.408601 CAACATTTCTATCCTATGAACCAAAGG 58.591 37.037 0.00 0.00 0.00 3.11
551 588 8.960591 ACAACATTTCTATCCTATGAACCAAAG 58.039 33.333 0.00 0.00 0.00 2.77
552 589 8.877864 ACAACATTTCTATCCTATGAACCAAA 57.122 30.769 0.00 0.00 0.00 3.28
553 590 8.877864 AACAACATTTCTATCCTATGAACCAA 57.122 30.769 0.00 0.00 0.00 3.67
554 591 8.739039 CAAACAACATTTCTATCCTATGAACCA 58.261 33.333 0.00 0.00 0.00 3.67
555 592 7.702348 GCAAACAACATTTCTATCCTATGAACC 59.298 37.037 0.00 0.00 0.00 3.62
556 593 7.702348 GGCAAACAACATTTCTATCCTATGAAC 59.298 37.037 0.00 0.00 0.00 3.18
557 594 7.395772 TGGCAAACAACATTTCTATCCTATGAA 59.604 33.333 0.00 0.00 0.00 2.57
558 595 6.889177 TGGCAAACAACATTTCTATCCTATGA 59.111 34.615 0.00 0.00 0.00 2.15
559 596 7.099266 TGGCAAACAACATTTCTATCCTATG 57.901 36.000 0.00 0.00 0.00 2.23
560 597 7.560991 TCATGGCAAACAACATTTCTATCCTAT 59.439 33.333 0.00 0.00 0.00 2.57
561 598 6.889177 TCATGGCAAACAACATTTCTATCCTA 59.111 34.615 0.00 0.00 0.00 2.94
562 599 5.716228 TCATGGCAAACAACATTTCTATCCT 59.284 36.000 0.00 0.00 0.00 3.24
563 600 5.964758 TCATGGCAAACAACATTTCTATCC 58.035 37.500 0.00 0.00 0.00 2.59
564 601 5.517770 GCTCATGGCAAACAACATTTCTATC 59.482 40.000 0.00 0.00 41.35 2.08
565 602 5.413499 GCTCATGGCAAACAACATTTCTAT 58.587 37.500 0.00 0.00 41.35 1.98
566 603 4.321899 GGCTCATGGCAAACAACATTTCTA 60.322 41.667 8.20 0.00 44.01 2.10
567 604 3.555586 GGCTCATGGCAAACAACATTTCT 60.556 43.478 8.20 0.00 44.01 2.52
571 608 1.340088 TGGCTCATGGCAAACAACAT 58.660 45.000 8.20 0.00 46.03 2.71
586 623 0.622136 TCTGACTGCATCCATTGGCT 59.378 50.000 0.00 0.00 0.00 4.75
587 624 1.688772 ATCTGACTGCATCCATTGGC 58.311 50.000 0.00 0.00 0.00 4.52
588 625 3.315470 CAGAATCTGACTGCATCCATTGG 59.685 47.826 3.77 0.00 32.44 3.16
590 627 4.498894 TCAGAATCTGACTGCATCCATT 57.501 40.909 9.18 0.00 35.39 3.16
592 629 3.986996 TTCAGAATCTGACTGCATCCA 57.013 42.857 13.17 0.00 40.46 3.41
593 630 4.142513 GGTTTTCAGAATCTGACTGCATCC 60.143 45.833 13.17 6.43 40.46 3.51
594 631 4.456911 TGGTTTTCAGAATCTGACTGCATC 59.543 41.667 13.17 2.07 40.46 3.91
597 634 3.817647 AGTGGTTTTCAGAATCTGACTGC 59.182 43.478 13.17 5.62 40.46 4.40
598 635 5.755813 CAAGTGGTTTTCAGAATCTGACTG 58.244 41.667 13.17 0.00 40.46 3.51
600 637 4.276926 AGCAAGTGGTTTTCAGAATCTGAC 59.723 41.667 13.17 2.13 40.46 3.51
644 738 8.518430 TGTTGCCTTCTTATGATATTTTGCTA 57.482 30.769 0.00 0.00 0.00 3.49
645 740 7.408756 TGTTGCCTTCTTATGATATTTTGCT 57.591 32.000 0.00 0.00 0.00 3.91
652 747 7.392953 TGACAATGTTGTTGCCTTCTTATGATA 59.607 33.333 0.00 0.00 42.43 2.15
655 750 5.771469 TGACAATGTTGTTGCCTTCTTATG 58.229 37.500 0.00 0.00 42.43 1.90
656 751 6.209192 TGATGACAATGTTGTTGCCTTCTTAT 59.791 34.615 0.00 0.00 42.43 1.73
657 752 5.534278 TGATGACAATGTTGTTGCCTTCTTA 59.466 36.000 0.00 0.00 42.43 2.10
712 871 6.379703 CCACCTAACAATTTTGTCCATATCCA 59.620 38.462 0.00 0.00 41.31 3.41
720 879 6.016276 ACTCATGTCCACCTAACAATTTTGTC 60.016 38.462 0.00 0.00 41.31 3.18
731 890 2.335681 TTCCCACTCATGTCCACCTA 57.664 50.000 0.00 0.00 0.00 3.08
738 897 3.683847 GCAGCTCTTATTCCCACTCATGT 60.684 47.826 0.00 0.00 0.00 3.21
743 902 1.195115 TCGCAGCTCTTATTCCCACT 58.805 50.000 0.00 0.00 0.00 4.00
763 922 1.753649 CAGGTGAGGAGTCGACATCAT 59.246 52.381 19.50 9.97 33.38 2.45
858 1024 2.113860 TCTTTGGCGAGGGAATCTTG 57.886 50.000 0.00 0.00 0.00 3.02
938 1104 0.741221 GTGGACGAGGATGAAGTGCC 60.741 60.000 0.00 0.00 0.00 5.01
987 1153 1.026718 GTAGCATCGGCACCAGCTTT 61.027 55.000 3.97 0.00 44.61 3.51
1301 1467 5.580022 AGGGCCTTAAGCTTGATTTTAAGA 58.420 37.500 9.86 0.00 43.05 2.10
1303 1469 4.398044 CGAGGGCCTTAAGCTTGATTTTAA 59.602 41.667 7.89 0.00 43.05 1.52
1305 1471 2.755103 CGAGGGCCTTAAGCTTGATTTT 59.245 45.455 7.89 0.00 43.05 1.82
1306 1472 2.026262 TCGAGGGCCTTAAGCTTGATTT 60.026 45.455 7.89 0.00 43.05 2.17
1362 3938 6.197276 CGAGAAATTAGCCATGATTGTTCAG 58.803 40.000 0.00 0.00 34.73 3.02
1572 4188 7.523293 TGTTGGTTCAATAGTTCACATCAAT 57.477 32.000 0.00 0.00 0.00 2.57
1578 4194 6.254804 GGTTGTTTGTTGGTTCAATAGTTCAC 59.745 38.462 0.00 0.00 0.00 3.18
1580 4196 6.334202 TGGTTGTTTGTTGGTTCAATAGTTC 58.666 36.000 0.00 0.00 0.00 3.01
1581 4197 6.287589 TGGTTGTTTGTTGGTTCAATAGTT 57.712 33.333 0.00 0.00 0.00 2.24
1582 4198 5.923733 TGGTTGTTTGTTGGTTCAATAGT 57.076 34.783 0.00 0.00 0.00 2.12
1583 4199 7.209475 AGAATGGTTGTTTGTTGGTTCAATAG 58.791 34.615 0.00 0.00 0.00 1.73
1585 4201 5.988287 AGAATGGTTGTTTGTTGGTTCAAT 58.012 33.333 0.00 0.00 0.00 2.57
1586 4202 5.413309 AGAATGGTTGTTTGTTGGTTCAA 57.587 34.783 0.00 0.00 0.00 2.69
1596 4212 8.548877 AGTATGATGGTACTAGAATGGTTGTTT 58.451 33.333 0.00 0.00 33.29 2.83
1614 4234 4.094739 TGCGTCCATGTTTTGAGTATGATG 59.905 41.667 0.00 0.00 0.00 3.07
1625 4245 0.606401 CAGGTCCTGCGTCCATGTTT 60.606 55.000 5.79 0.00 0.00 2.83
1655 4290 2.743718 CCGGTCTCACCAGCAACT 59.256 61.111 0.00 0.00 38.47 3.16
1696 4331 1.040339 AGAGCCTCGTCCCTCATCAC 61.040 60.000 0.00 0.00 0.00 3.06
1728 4363 1.331214 TCTTCACCGACCCGTAGTTT 58.669 50.000 0.00 0.00 0.00 2.66
1760 4395 1.338105 TGGAAGCATCGTCCTTGAGTG 60.338 52.381 0.94 0.00 36.03 3.51
1761 4396 0.976641 TGGAAGCATCGTCCTTGAGT 59.023 50.000 0.94 0.00 36.03 3.41
1894 4532 0.107993 TTGGCGATCCTGAGCAGAAG 60.108 55.000 0.00 0.00 34.54 2.85
1920 4558 1.195448 GTGCACAACCATTCTCAGTCG 59.805 52.381 13.17 0.00 0.00 4.18
2018 7047 6.580041 GTCGTGTGTATTAATTCGGATCGTAT 59.420 38.462 0.00 0.00 0.00 3.06
2020 7049 4.736793 GTCGTGTGTATTAATTCGGATCGT 59.263 41.667 0.00 0.00 0.00 3.73
2035 7064 5.401531 AACCTCTATACAATGTCGTGTGT 57.598 39.130 0.00 0.00 32.75 3.72
2036 7065 5.454554 CGTAACCTCTATACAATGTCGTGTG 59.545 44.000 0.00 0.00 32.75 3.82
2055 7084 7.115947 CCTCCTATCCGAATTAATGAACGTAAC 59.884 40.741 0.00 0.00 0.00 2.50
2058 7087 5.510861 CCCTCCTATCCGAATTAATGAACGT 60.511 44.000 0.00 0.00 0.00 3.99
2062 7091 4.223032 GCTCCCTCCTATCCGAATTAATGA 59.777 45.833 0.00 0.00 0.00 2.57
2071 7100 1.414158 TCTTTGCTCCCTCCTATCCG 58.586 55.000 0.00 0.00 0.00 4.18
2072 7101 3.933861 TTTCTTTGCTCCCTCCTATCC 57.066 47.619 0.00 0.00 0.00 2.59
2076 7110 3.849527 ACAAATTTCTTTGCTCCCTCCT 58.150 40.909 0.00 0.00 44.63 3.69
2085 7119 6.950428 CGTCGATCAGTCTACAAATTTCTTTG 59.050 38.462 0.00 0.00 45.92 2.77
2092 7126 4.504461 GCATTCGTCGATCAGTCTACAAAT 59.496 41.667 0.00 0.00 0.00 2.32
2093 7127 3.857665 GCATTCGTCGATCAGTCTACAAA 59.142 43.478 0.00 0.00 0.00 2.83
2094 7128 3.435566 GCATTCGTCGATCAGTCTACAA 58.564 45.455 0.00 0.00 0.00 2.41
2095 7129 2.223502 GGCATTCGTCGATCAGTCTACA 60.224 50.000 0.00 0.00 0.00 2.74
2096 7130 2.223502 TGGCATTCGTCGATCAGTCTAC 60.224 50.000 0.00 0.00 0.00 2.59
2097 7131 2.021457 TGGCATTCGTCGATCAGTCTA 58.979 47.619 0.00 0.00 0.00 2.59
2098 7132 0.817654 TGGCATTCGTCGATCAGTCT 59.182 50.000 0.00 0.00 0.00 3.24
2110 7144 2.422276 AACGCTTCAGTTTGGCATTC 57.578 45.000 0.00 0.00 0.00 2.67
2137 7171 2.036862 ACCGTGAACTCCTTGAAGGTAC 59.963 50.000 11.60 3.68 36.53 3.34
2138 7172 2.322658 ACCGTGAACTCCTTGAAGGTA 58.677 47.619 11.60 0.00 36.53 3.08
2139 7173 1.129058 ACCGTGAACTCCTTGAAGGT 58.871 50.000 11.60 0.00 36.53 3.50
2140 7174 2.256117 AACCGTGAACTCCTTGAAGG 57.744 50.000 4.45 4.45 36.46 3.46
2141 7175 3.933332 GGATAACCGTGAACTCCTTGAAG 59.067 47.826 0.00 0.00 0.00 3.02
2142 7176 3.307199 GGGATAACCGTGAACTCCTTGAA 60.307 47.826 0.00 0.00 36.97 2.69
2143 7177 2.235402 GGGATAACCGTGAACTCCTTGA 59.765 50.000 0.00 0.00 36.97 3.02
2144 7178 2.629051 GGGATAACCGTGAACTCCTTG 58.371 52.381 0.00 0.00 36.97 3.61
2156 7190 3.427098 CCTTTTCTTTTCGCGGGATAACC 60.427 47.826 6.13 0.00 0.00 2.85
2157 7191 3.437741 TCCTTTTCTTTTCGCGGGATAAC 59.562 43.478 6.13 0.00 0.00 1.89
2158 7192 3.677190 TCCTTTTCTTTTCGCGGGATAA 58.323 40.909 6.13 3.92 0.00 1.75
2159 7193 3.267483 CTCCTTTTCTTTTCGCGGGATA 58.733 45.455 6.13 0.00 0.00 2.59
2160 7194 2.084546 CTCCTTTTCTTTTCGCGGGAT 58.915 47.619 6.13 0.00 0.00 3.85
2161 7195 1.202722 ACTCCTTTTCTTTTCGCGGGA 60.203 47.619 6.13 0.00 0.00 5.14
2162 7196 1.235724 ACTCCTTTTCTTTTCGCGGG 58.764 50.000 6.13 0.00 0.00 6.13
2163 7197 2.289547 TGAACTCCTTTTCTTTTCGCGG 59.710 45.455 6.13 0.00 0.00 6.46
2164 7198 3.289076 GTGAACTCCTTTTCTTTTCGCG 58.711 45.455 0.00 0.00 0.00 5.87
2165 7199 3.289076 CGTGAACTCCTTTTCTTTTCGC 58.711 45.455 0.00 0.00 0.00 4.70
2166 7200 3.311596 ACCGTGAACTCCTTTTCTTTTCG 59.688 43.478 0.00 0.00 0.00 3.46
2167 7201 4.895224 ACCGTGAACTCCTTTTCTTTTC 57.105 40.909 0.00 0.00 0.00 2.29
2168 7202 6.762702 TTAACCGTGAACTCCTTTTCTTTT 57.237 33.333 0.00 0.00 0.00 2.27
2169 7203 6.762702 TTTAACCGTGAACTCCTTTTCTTT 57.237 33.333 0.00 0.00 0.00 2.52
2170 7204 6.954487 ATTTAACCGTGAACTCCTTTTCTT 57.046 33.333 0.00 0.00 0.00 2.52
2171 7205 6.320418 ACAATTTAACCGTGAACTCCTTTTCT 59.680 34.615 0.00 0.00 0.00 2.52
2172 7206 6.500910 ACAATTTAACCGTGAACTCCTTTTC 58.499 36.000 0.00 0.00 0.00 2.29
2173 7207 6.459670 ACAATTTAACCGTGAACTCCTTTT 57.540 33.333 0.00 0.00 0.00 2.27
2174 7208 6.459670 AACAATTTAACCGTGAACTCCTTT 57.540 33.333 0.00 0.00 0.00 3.11
2175 7209 6.769341 ACTAACAATTTAACCGTGAACTCCTT 59.231 34.615 0.00 0.00 0.00 3.36
2176 7210 6.204108 CACTAACAATTTAACCGTGAACTCCT 59.796 38.462 0.00 0.00 0.00 3.69
2177 7211 6.368213 CACTAACAATTTAACCGTGAACTCC 58.632 40.000 0.00 0.00 0.00 3.85
2178 7212 6.017687 ACCACTAACAATTTAACCGTGAACTC 60.018 38.462 0.00 0.00 0.00 3.01
2179 7213 5.824097 ACCACTAACAATTTAACCGTGAACT 59.176 36.000 0.00 0.00 0.00 3.01
2180 7214 6.063640 ACCACTAACAATTTAACCGTGAAC 57.936 37.500 0.00 0.00 0.00 3.18
2181 7215 6.427547 CCTACCACTAACAATTTAACCGTGAA 59.572 38.462 0.00 0.00 0.00 3.18
2182 7216 5.933463 CCTACCACTAACAATTTAACCGTGA 59.067 40.000 0.00 0.00 0.00 4.35
2183 7217 5.702209 ACCTACCACTAACAATTTAACCGTG 59.298 40.000 0.00 0.00 0.00 4.94
2184 7218 5.868454 ACCTACCACTAACAATTTAACCGT 58.132 37.500 0.00 0.00 0.00 4.83
2185 7219 6.806388 AACCTACCACTAACAATTTAACCG 57.194 37.500 0.00 0.00 0.00 4.44
2193 7227 8.301002 GCAATCAATTTAACCTACCACTAACAA 58.699 33.333 0.00 0.00 0.00 2.83
2194 7228 7.668052 AGCAATCAATTTAACCTACCACTAACA 59.332 33.333 0.00 0.00 0.00 2.41
2195 7229 7.968405 CAGCAATCAATTTAACCTACCACTAAC 59.032 37.037 0.00 0.00 0.00 2.34
2196 7230 7.668052 ACAGCAATCAATTTAACCTACCACTAA 59.332 33.333 0.00 0.00 0.00 2.24
2197 7231 7.172342 ACAGCAATCAATTTAACCTACCACTA 58.828 34.615 0.00 0.00 0.00 2.74
2198 7232 6.010219 ACAGCAATCAATTTAACCTACCACT 58.990 36.000 0.00 0.00 0.00 4.00
2199 7233 6.267496 ACAGCAATCAATTTAACCTACCAC 57.733 37.500 0.00 0.00 0.00 4.16
2200 7234 6.909550 AACAGCAATCAATTTAACCTACCA 57.090 33.333 0.00 0.00 0.00 3.25
2201 7235 8.276252 TCTAACAGCAATCAATTTAACCTACC 57.724 34.615 0.00 0.00 0.00 3.18
2202 7236 9.774742 CTTCTAACAGCAATCAATTTAACCTAC 57.225 33.333 0.00 0.00 0.00 3.18
2203 7237 9.733556 TCTTCTAACAGCAATCAATTTAACCTA 57.266 29.630 0.00 0.00 0.00 3.08
2204 7238 8.515414 GTCTTCTAACAGCAATCAATTTAACCT 58.485 33.333 0.00 0.00 0.00 3.50
2205 7239 7.755373 GGTCTTCTAACAGCAATCAATTTAACC 59.245 37.037 0.00 0.00 0.00 2.85
2206 7240 7.755373 GGGTCTTCTAACAGCAATCAATTTAAC 59.245 37.037 0.00 0.00 0.00 2.01
2207 7241 7.361713 CGGGTCTTCTAACAGCAATCAATTTAA 60.362 37.037 0.00 0.00 0.00 1.52
2208 7242 6.093495 CGGGTCTTCTAACAGCAATCAATTTA 59.907 38.462 0.00 0.00 0.00 1.40
2209 7243 5.106157 CGGGTCTTCTAACAGCAATCAATTT 60.106 40.000 0.00 0.00 0.00 1.82
2210 7244 4.396166 CGGGTCTTCTAACAGCAATCAATT 59.604 41.667 0.00 0.00 0.00 2.32
2211 7245 3.941483 CGGGTCTTCTAACAGCAATCAAT 59.059 43.478 0.00 0.00 0.00 2.57
2212 7246 3.007506 TCGGGTCTTCTAACAGCAATCAA 59.992 43.478 0.00 0.00 0.00 2.57
2213 7247 2.565391 TCGGGTCTTCTAACAGCAATCA 59.435 45.455 0.00 0.00 0.00 2.57
2214 7248 3.247006 TCGGGTCTTCTAACAGCAATC 57.753 47.619 0.00 0.00 0.00 2.67
2215 7249 3.197766 TGATCGGGTCTTCTAACAGCAAT 59.802 43.478 0.00 0.00 0.00 3.56
2216 7250 2.565391 TGATCGGGTCTTCTAACAGCAA 59.435 45.455 0.00 0.00 0.00 3.91
2217 7251 2.094182 GTGATCGGGTCTTCTAACAGCA 60.094 50.000 0.00 0.00 0.00 4.41
2218 7252 2.541556 GTGATCGGGTCTTCTAACAGC 58.458 52.381 0.00 0.00 0.00 4.40
2219 7253 2.159085 GGGTGATCGGGTCTTCTAACAG 60.159 54.545 0.00 0.00 0.00 3.16
2220 7254 1.829222 GGGTGATCGGGTCTTCTAACA 59.171 52.381 0.00 0.00 0.00 2.41
2221 7255 1.138464 GGGGTGATCGGGTCTTCTAAC 59.862 57.143 0.00 0.00 0.00 2.34
2222 7256 1.492764 GGGGTGATCGGGTCTTCTAA 58.507 55.000 0.00 0.00 0.00 2.10
2223 7257 0.754217 CGGGGTGATCGGGTCTTCTA 60.754 60.000 0.00 0.00 0.00 2.10
2224 7258 2.058595 CGGGGTGATCGGGTCTTCT 61.059 63.158 0.00 0.00 0.00 2.85
2225 7259 1.896122 AACGGGGTGATCGGGTCTTC 61.896 60.000 0.00 0.00 0.00 2.87
2226 7260 1.916777 AACGGGGTGATCGGGTCTT 60.917 57.895 0.00 0.00 0.00 3.01
2227 7261 2.284405 AACGGGGTGATCGGGTCT 60.284 61.111 0.00 0.00 0.00 3.85
2228 7262 2.125269 CAACGGGGTGATCGGGTC 60.125 66.667 0.00 0.00 0.00 4.46
2229 7263 4.404098 GCAACGGGGTGATCGGGT 62.404 66.667 0.00 0.00 0.00 5.28
2230 7264 2.040009 ATAGCAACGGGGTGATCGGG 62.040 60.000 0.00 0.00 0.00 5.14
2231 7265 0.179056 AATAGCAACGGGGTGATCGG 60.179 55.000 0.00 0.00 0.00 4.18
2232 7266 1.663695 AAATAGCAACGGGGTGATCG 58.336 50.000 0.00 0.00 0.00 3.69
2233 7267 3.181490 GGAAAAATAGCAACGGGGTGATC 60.181 47.826 0.00 0.00 0.00 2.92
2234 7268 2.758423 GGAAAAATAGCAACGGGGTGAT 59.242 45.455 0.00 0.00 0.00 3.06
2235 7269 2.164338 GGAAAAATAGCAACGGGGTGA 58.836 47.619 0.00 0.00 0.00 4.02
2236 7270 1.203758 GGGAAAAATAGCAACGGGGTG 59.796 52.381 0.00 0.00 0.00 4.61
2237 7271 1.552578 GGGAAAAATAGCAACGGGGT 58.447 50.000 0.00 0.00 0.00 4.95
2238 7272 0.454196 CGGGAAAAATAGCAACGGGG 59.546 55.000 0.00 0.00 0.00 5.73
2239 7273 1.131693 GTCGGGAAAAATAGCAACGGG 59.868 52.381 0.00 0.00 0.00 5.28
2240 7274 2.081462 AGTCGGGAAAAATAGCAACGG 58.919 47.619 0.00 0.00 0.00 4.44
2241 7275 3.824414 AAGTCGGGAAAAATAGCAACG 57.176 42.857 0.00 0.00 0.00 4.10
2242 7276 5.048573 TGGTAAAGTCGGGAAAAATAGCAAC 60.049 40.000 0.00 0.00 0.00 4.17
2243 7277 5.071370 TGGTAAAGTCGGGAAAAATAGCAA 58.929 37.500 0.00 0.00 0.00 3.91
2244 7278 4.653868 TGGTAAAGTCGGGAAAAATAGCA 58.346 39.130 0.00 0.00 0.00 3.49
2245 7279 5.830000 ATGGTAAAGTCGGGAAAAATAGC 57.170 39.130 0.00 0.00 0.00 2.97
2327 7361 9.857656 AGGTTTGAATCAATATGATGTGTAGAT 57.142 29.630 0.00 0.00 37.15 1.98
2328 7362 9.685276 AAGGTTTGAATCAATATGATGTGTAGA 57.315 29.630 0.00 0.00 37.15 2.59
2329 7363 9.726232 CAAGGTTTGAATCAATATGATGTGTAG 57.274 33.333 0.00 0.00 37.15 2.74
2330 7364 9.241919 ACAAGGTTTGAATCAATATGATGTGTA 57.758 29.630 0.00 0.00 37.15 2.90
2331 7365 8.125978 ACAAGGTTTGAATCAATATGATGTGT 57.874 30.769 0.00 0.00 37.15 3.72
2332 7366 8.865978 CAACAAGGTTTGAATCAATATGATGTG 58.134 33.333 0.00 0.00 37.15 3.21
2333 7367 8.805175 TCAACAAGGTTTGAATCAATATGATGT 58.195 29.630 0.00 0.00 37.15 3.06
2334 7368 9.811995 ATCAACAAGGTTTGAATCAATATGATG 57.188 29.630 0.00 0.17 38.95 3.07
2336 7370 9.859427 GAATCAACAAGGTTTGAATCAATATGA 57.141 29.630 0.00 0.00 38.95 2.15
2337 7371 9.642327 TGAATCAACAAGGTTTGAATCAATATG 57.358 29.630 0.00 0.00 40.73 1.78
2341 7375 6.760770 GGTTGAATCAACAAGGTTTGAATCAA 59.239 34.615 25.14 10.77 46.18 2.57
2342 7376 6.279882 GGTTGAATCAACAAGGTTTGAATCA 58.720 36.000 25.14 0.50 45.11 2.57
2343 7377 5.696270 GGGTTGAATCAACAAGGTTTGAATC 59.304 40.000 25.14 5.45 45.11 2.52
2344 7378 5.454613 GGGGTTGAATCAACAAGGTTTGAAT 60.455 40.000 25.14 0.00 45.11 2.57
2345 7379 4.141824 GGGGTTGAATCAACAAGGTTTGAA 60.142 41.667 25.14 0.00 45.11 2.69
2346 7380 3.386402 GGGGTTGAATCAACAAGGTTTGA 59.614 43.478 25.14 0.00 45.11 2.69
2347 7381 3.494223 GGGGGTTGAATCAACAAGGTTTG 60.494 47.826 25.14 0.00 45.11 2.93
2348 7382 2.703536 GGGGGTTGAATCAACAAGGTTT 59.296 45.455 25.14 0.00 45.11 3.27
2349 7383 2.325484 GGGGGTTGAATCAACAAGGTT 58.675 47.619 25.14 0.00 45.11 3.50
2350 7384 2.009681 GGGGGTTGAATCAACAAGGT 57.990 50.000 25.14 0.00 45.11 3.50
2384 7418 9.706691 CAACGGGTCATCTAGTACATATAAAAT 57.293 33.333 0.00 0.00 0.00 1.82
2385 7419 7.654520 GCAACGGGTCATCTAGTACATATAAAA 59.345 37.037 0.00 0.00 0.00 1.52
2386 7420 7.149973 GCAACGGGTCATCTAGTACATATAAA 58.850 38.462 0.00 0.00 0.00 1.40
2387 7421 6.569035 CGCAACGGGTCATCTAGTACATATAA 60.569 42.308 0.00 0.00 0.00 0.98
2388 7422 5.106436 CGCAACGGGTCATCTAGTACATATA 60.106 44.000 0.00 0.00 0.00 0.86
2389 7423 4.321008 CGCAACGGGTCATCTAGTACATAT 60.321 45.833 0.00 0.00 0.00 1.78
2390 7424 3.004002 CGCAACGGGTCATCTAGTACATA 59.996 47.826 0.00 0.00 0.00 2.29
2391 7425 2.223735 CGCAACGGGTCATCTAGTACAT 60.224 50.000 0.00 0.00 0.00 2.29
2392 7426 1.133598 CGCAACGGGTCATCTAGTACA 59.866 52.381 0.00 0.00 0.00 2.90
2393 7427 1.836383 CGCAACGGGTCATCTAGTAC 58.164 55.000 0.00 0.00 0.00 2.73
2421 7455 4.462483 ACATGGTTCGAATTGGCTATTTGT 59.538 37.500 0.00 0.00 0.00 2.83
2426 7460 6.995686 ACATAATACATGGTTCGAATTGGCTA 59.004 34.615 0.00 0.00 0.00 3.93
2461 7495 5.692115 TTGCTTTCTCTCATATGTACCCA 57.308 39.130 1.90 0.00 0.00 4.51
2465 7499 9.322773 CTTGATCTTTGCTTTCTCTCATATGTA 57.677 33.333 1.90 0.00 0.00 2.29
2525 7559 9.045223 GCATTCACACATTAGACATGACTATAA 57.955 33.333 5.74 0.00 0.00 0.98
2526 7560 7.657354 GGCATTCACACATTAGACATGACTATA 59.343 37.037 5.74 0.00 0.00 1.31
2527 7561 6.484643 GGCATTCACACATTAGACATGACTAT 59.515 38.462 5.74 0.00 0.00 2.12
2528 7562 5.817296 GGCATTCACACATTAGACATGACTA 59.183 40.000 0.00 0.00 0.00 2.59
2529 7563 4.637534 GGCATTCACACATTAGACATGACT 59.362 41.667 0.00 0.00 0.00 3.41
2552 7586 8.550376 CAAAACAGGGTTACAAAAGATGATTTG 58.450 33.333 0.00 0.00 44.11 2.32
2561 7595 4.142049 CCAGAGCAAAACAGGGTTACAAAA 60.142 41.667 0.00 0.00 0.00 2.44
2697 7745 6.367422 CGATGAGGAGGTAAATTATGAGAAGC 59.633 42.308 0.00 0.00 0.00 3.86
2713 7761 2.093764 GGATTATGGAGGCGATGAGGAG 60.094 54.545 0.00 0.00 0.00 3.69
2716 7764 2.830923 AGAGGATTATGGAGGCGATGAG 59.169 50.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.