Multiple sequence alignment - TraesCS3A01G455900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G455900 chr3A 100.000 3994 0 0 1 3994 693339023 693335030 0.000000e+00 7376.0
1 TraesCS3A01G455900 chr3A 88.814 1788 162 16 2117 3876 693206883 693205106 0.000000e+00 2159.0
2 TraesCS3A01G455900 chr3A 87.561 611 59 7 864 1468 693207865 693207266 0.000000e+00 691.0
3 TraesCS3A01G455900 chr3A 95.935 123 5 0 1485 1607 171206142 171206264 2.430000e-47 200.0
4 TraesCS3A01G455900 chr3D 95.251 1811 71 6 1606 3407 557559968 557558164 0.000000e+00 2854.0
5 TraesCS3A01G455900 chr3D 95.196 1811 72 6 1606 3407 557524483 557522679 0.000000e+00 2848.0
6 TraesCS3A01G455900 chr3D 89.406 1718 142 23 2187 3876 557498928 557497223 0.000000e+00 2128.0
7 TraesCS3A01G455900 chr3D 93.986 1164 29 7 335 1489 557525613 557524482 0.000000e+00 1724.0
8 TraesCS3A01G455900 chr3D 94.355 620 29 4 3381 3994 557521837 557521218 0.000000e+00 946.0
9 TraesCS3A01G455900 chr3D 94.981 538 20 3 2871 3407 557589505 557588974 0.000000e+00 837.0
10 TraesCS3A01G455900 chr3D 90.016 611 44 10 864 1468 557501115 557500516 0.000000e+00 774.0
11 TraesCS3A01G455900 chr3D 87.154 506 59 6 953 1452 554836766 554837271 1.610000e-158 569.0
12 TraesCS3A01G455900 chr3D 88.221 416 10 9 503 909 557560581 557560196 1.010000e-125 460.0
13 TraesCS3A01G455900 chr3D 90.028 351 17 11 3 337 557530881 557530533 4.740000e-119 438.0
14 TraesCS3A01G455900 chr3D 89.459 351 19 11 3 337 557565555 557565207 1.030000e-115 427.0
15 TraesCS3A01G455900 chr3D 98.174 219 4 0 1271 1489 557560185 557559967 2.250000e-102 383.0
16 TraesCS3A01G455900 chr3D 91.892 111 8 1 3885 3994 557497189 557497079 1.920000e-33 154.0
17 TraesCS3A01G455900 chr3D 89.320 103 11 0 763 865 557501249 557501147 3.240000e-26 130.0
18 TraesCS3A01G455900 chrUn 95.452 1495 56 5 1888 3376 395274260 395272772 0.000000e+00 2374.0
19 TraesCS3A01G455900 chrUn 95.479 1460 53 4 1606 3057 252806960 252805506 0.000000e+00 2318.0
20 TraesCS3A01G455900 chrUn 93.779 1093 27 7 335 1418 45145109 45144049 0.000000e+00 1604.0
21 TraesCS3A01G455900 chrUn 94.515 948 44 3 1606 2545 431272541 431273488 0.000000e+00 1456.0
22 TraesCS3A01G455900 chrUn 94.610 538 22 3 2871 3407 463386773 463386242 0.000000e+00 826.0
23 TraesCS3A01G455900 chrUn 90.240 584 16 10 335 909 388796361 388796912 0.000000e+00 725.0
24 TraesCS3A01G455900 chrUn 89.744 351 18 11 3 337 298430665 298431013 2.200000e-117 433.0
25 TraesCS3A01G455900 chrUn 89.459 351 19 11 3 337 317524004 317523656 1.030000e-115 427.0
26 TraesCS3A01G455900 chrUn 98.174 219 4 0 1271 1489 252807177 252806959 2.250000e-102 383.0
27 TraesCS3A01G455900 chrUn 98.174 219 4 0 1271 1489 431272324 431272542 2.250000e-102 383.0
28 TraesCS3A01G455900 chrUn 84.971 173 16 8 1446 1610 147214913 147214743 2.470000e-37 167.0
29 TraesCS3A01G455900 chrUn 84.971 173 16 8 1446 1610 147284911 147284741 2.470000e-37 167.0
30 TraesCS3A01G455900 chrUn 79.130 115 21 2 1845 1959 307514887 307514998 4.280000e-10 76.8
31 TraesCS3A01G455900 chr3B 86.117 1844 168 32 2108 3876 739655322 739653492 0.000000e+00 1906.0
32 TraesCS3A01G455900 chr3B 85.685 1439 147 20 2488 3876 739600205 739598776 0.000000e+00 1461.0
33 TraesCS3A01G455900 chr3B 87.990 1174 107 20 2184 3328 739661453 739660285 0.000000e+00 1356.0
34 TraesCS3A01G455900 chr3B 90.276 617 53 4 870 1480 739601903 739601288 0.000000e+00 800.0
35 TraesCS3A01G455900 chr3B 85.790 753 67 17 765 1483 739656641 739655895 0.000000e+00 761.0
36 TraesCS3A01G455900 chr3B 87.624 606 58 7 864 1466 739662367 739661776 0.000000e+00 688.0
37 TraesCS3A01G455900 chr3B 82.209 697 77 22 3324 3982 739660002 739659315 1.250000e-154 556.0
38 TraesCS3A01G455900 chr3B 86.561 506 62 6 953 1452 737922310 737921805 1.620000e-153 553.0
39 TraesCS3A01G455900 chr3B 85.976 492 33 9 406 865 739602998 739602511 9.970000e-136 494.0
40 TraesCS3A01G455900 chr3B 80.792 682 73 25 2939 3596 739520718 739520071 7.760000e-132 481.0
41 TraesCS3A01G455900 chr3B 95.968 124 1 2 1487 1610 761883066 761883185 8.760000e-47 198.0
42 TraesCS3A01G455900 chr3B 93.421 76 4 1 2039 2114 739600653 739600579 1.170000e-20 111.0
43 TraesCS3A01G455900 chr3B 83.838 99 13 3 1845 1943 153542336 153542431 1.530000e-14 91.6
44 TraesCS3A01G455900 chr1D 96.721 122 3 1 1488 1609 299925731 299925851 6.770000e-48 202.0
45 TraesCS3A01G455900 chr4B 95.868 121 4 1 1488 1608 128024815 128024696 1.130000e-45 195.0
46 TraesCS3A01G455900 chr2B 95.041 121 6 0 1487 1607 166046777 166046657 1.470000e-44 191.0
47 TraesCS3A01G455900 chr2B 79.130 115 22 2 1845 1959 749227030 749226918 1.190000e-10 78.7
48 TraesCS3A01G455900 chr7B 85.549 173 15 8 1446 1610 671044788 671044618 5.310000e-39 172.0
49 TraesCS3A01G455900 chr7B 85.549 173 15 8 1446 1610 671163434 671163264 5.310000e-39 172.0
50 TraesCS3A01G455900 chr6B 82.828 99 14 3 1845 1943 601137698 601137603 7.110000e-13 86.1
51 TraesCS3A01G455900 chr5D 87.500 72 5 3 2101 2170 443649291 443649360 3.310000e-11 80.5
52 TraesCS3A01G455900 chr5B 88.060 67 8 0 2121 2187 323708823 323708757 3.310000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G455900 chr3A 693335030 693339023 3993 True 7376.000000 7376 100.000000 1 3994 1 chr3A.!!$R1 3993
1 TraesCS3A01G455900 chr3A 693205106 693207865 2759 True 1425.000000 2159 88.187500 864 3876 2 chr3A.!!$R2 3012
2 TraesCS3A01G455900 chr3D 557521218 557525613 4395 True 1839.333333 2848 94.512333 335 3994 3 chr3D.!!$R5 3659
3 TraesCS3A01G455900 chr3D 557558164 557560581 2417 True 1232.333333 2854 93.882000 503 3407 3 chr3D.!!$R6 2904
4 TraesCS3A01G455900 chr3D 557588974 557589505 531 True 837.000000 837 94.981000 2871 3407 1 chr3D.!!$R3 536
5 TraesCS3A01G455900 chr3D 557497079 557501249 4170 True 796.500000 2128 90.158500 763 3994 4 chr3D.!!$R4 3231
6 TraesCS3A01G455900 chr3D 554836766 554837271 505 False 569.000000 569 87.154000 953 1452 1 chr3D.!!$F1 499
7 TraesCS3A01G455900 chrUn 395272772 395274260 1488 True 2374.000000 2374 95.452000 1888 3376 1 chrUn.!!$R5 1488
8 TraesCS3A01G455900 chrUn 45144049 45145109 1060 True 1604.000000 1604 93.779000 335 1418 1 chrUn.!!$R1 1083
9 TraesCS3A01G455900 chrUn 252805506 252807177 1671 True 1350.500000 2318 96.826500 1271 3057 2 chrUn.!!$R7 1786
10 TraesCS3A01G455900 chrUn 431272324 431273488 1164 False 919.500000 1456 96.344500 1271 2545 2 chrUn.!!$F4 1274
11 TraesCS3A01G455900 chrUn 463386242 463386773 531 True 826.000000 826 94.610000 2871 3407 1 chrUn.!!$R6 536
12 TraesCS3A01G455900 chrUn 388796361 388796912 551 False 725.000000 725 90.240000 335 909 1 chrUn.!!$F3 574
13 TraesCS3A01G455900 chr3B 739653492 739662367 8875 True 1053.400000 1906 85.946000 765 3982 5 chr3B.!!$R4 3217
14 TraesCS3A01G455900 chr3B 739598776 739602998 4222 True 716.500000 1461 88.839500 406 3876 4 chr3B.!!$R3 3470
15 TraesCS3A01G455900 chr3B 737921805 737922310 505 True 553.000000 553 86.561000 953 1452 1 chr3B.!!$R1 499
16 TraesCS3A01G455900 chr3B 739520071 739520718 647 True 481.000000 481 80.792000 2939 3596 1 chr3B.!!$R2 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.108615 CAGTGGAGGAGCTACAACCG 60.109 60.0 0.0 0.0 0.00 4.44 F
172 173 0.114364 ATCCGGCAAGGGGAAAAACT 59.886 50.0 0.0 0.0 41.52 2.66 F
1291 6880 0.107945 GCGAGAGGCTGATTCTGGTT 60.108 55.0 0.0 0.0 39.11 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1195 6784 0.532573 ACGAGTGCACCTCATCGATT 59.467 50.000 26.78 8.06 40.48 3.34 R
1693 7288 1.079405 CGGCCTCACCAACATACGT 60.079 57.895 0.00 0.00 39.03 3.57 R
3279 10367 3.512496 TGGCCAATATCGGTGTCCTATA 58.488 45.455 0.61 0.00 0.00 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.361610 AGCTTTCCCATGCACCGG 60.362 61.111 0.00 0.00 0.00 5.28
18 19 2.676471 GCTTTCCCATGCACCGGT 60.676 61.111 0.00 0.00 0.00 5.28
19 20 2.275380 GCTTTCCCATGCACCGGTT 61.275 57.895 2.97 0.00 0.00 4.44
20 21 1.883021 CTTTCCCATGCACCGGTTC 59.117 57.895 2.97 0.00 0.00 3.62
21 22 1.595093 CTTTCCCATGCACCGGTTCC 61.595 60.000 2.97 0.00 0.00 3.62
23 24 2.751436 CCCATGCACCGGTTCCAG 60.751 66.667 2.97 0.00 0.00 3.86
24 25 3.443045 CCATGCACCGGTTCCAGC 61.443 66.667 2.97 5.90 0.00 4.85
25 26 2.672651 CATGCACCGGTTCCAGCA 60.673 61.111 18.42 18.42 41.73 4.41
26 27 2.672996 ATGCACCGGTTCCAGCAC 60.673 61.111 18.48 0.00 40.14 4.40
27 28 4.947147 TGCACCGGTTCCAGCACC 62.947 66.667 12.90 0.00 31.05 5.01
34 35 3.009612 GGTTCCAGCACCGTAAACA 57.990 52.632 0.00 0.00 0.00 2.83
36 37 0.589708 GTTCCAGCACCGTAAACACC 59.410 55.000 0.00 0.00 0.00 4.16
37 38 0.881159 TTCCAGCACCGTAAACACCG 60.881 55.000 0.00 0.00 0.00 4.94
43 44 4.775295 CCGTAAACACCGGTTCCA 57.225 55.556 2.97 0.00 40.59 3.53
44 45 2.535588 CCGTAAACACCGGTTCCAG 58.464 57.895 2.97 0.00 40.59 3.86
45 46 1.571215 CCGTAAACACCGGTTCCAGC 61.571 60.000 2.97 0.00 40.59 4.85
46 47 0.881159 CGTAAACACCGGTTCCAGCA 60.881 55.000 2.97 0.00 35.82 4.41
47 48 0.589708 GTAAACACCGGTTCCAGCAC 59.410 55.000 2.97 0.00 35.82 4.40
48 49 0.535553 TAAACACCGGTTCCAGCACC 60.536 55.000 2.97 0.00 35.82 5.01
78 79 3.747976 TCGCAGCACAGCTCGCTA 61.748 61.111 6.84 0.00 37.72 4.26
79 80 3.253206 CGCAGCACAGCTCGCTAG 61.253 66.667 6.84 3.92 37.72 3.42
96 97 2.330393 GCGTATAGCGGTGCTCGA 59.670 61.111 0.00 0.00 40.44 4.04
97 98 2.009755 GCGTATAGCGGTGCTCGAC 61.010 63.158 0.00 0.00 40.44 4.20
98 99 1.721476 CGTATAGCGGTGCTCGACG 60.721 63.158 0.00 9.89 40.44 5.12
109 110 4.116328 CTCGACGCCGAAGCTGGA 62.116 66.667 0.00 0.00 45.04 3.86
110 111 3.626680 CTCGACGCCGAAGCTGGAA 62.627 63.158 0.00 0.00 45.04 3.53
111 112 3.479269 CGACGCCGAAGCTGGAAC 61.479 66.667 0.00 0.00 38.22 3.62
123 124 3.636231 TGGAACCGGCCAGTGGAG 61.636 66.667 15.20 5.65 33.10 3.86
124 125 4.410400 GGAACCGGCCAGTGGAGG 62.410 72.222 15.20 17.61 0.00 4.30
126 127 3.316573 GAACCGGCCAGTGGAGGAG 62.317 68.421 25.29 8.83 0.00 3.69
129 130 2.759973 CGGCCAGTGGAGGAGCTA 60.760 66.667 15.20 0.00 0.00 3.32
134 135 0.250513 CCAGTGGAGGAGCTACAACC 59.749 60.000 1.68 1.40 0.00 3.77
135 136 0.108615 CAGTGGAGGAGCTACAACCG 60.109 60.000 0.00 0.00 0.00 4.44
136 137 1.218316 GTGGAGGAGCTACAACCGG 59.782 63.158 0.00 0.00 0.00 5.28
140 141 0.741221 GAGGAGCTACAACCGGCAAG 60.741 60.000 0.00 0.00 0.00 4.01
144 145 0.328258 AGCTACAACCGGCAAGGAAT 59.672 50.000 0.00 0.00 45.00 3.01
145 146 1.557832 AGCTACAACCGGCAAGGAATA 59.442 47.619 0.00 0.00 45.00 1.75
146 147 1.940613 GCTACAACCGGCAAGGAATAG 59.059 52.381 0.00 0.00 45.00 1.73
147 148 2.419574 GCTACAACCGGCAAGGAATAGA 60.420 50.000 0.00 0.00 45.00 1.98
148 149 2.403252 ACAACCGGCAAGGAATAGAG 57.597 50.000 0.00 0.00 45.00 2.43
149 150 1.017387 CAACCGGCAAGGAATAGAGC 58.983 55.000 0.00 0.00 45.00 4.09
150 151 0.912486 AACCGGCAAGGAATAGAGCT 59.088 50.000 0.00 0.00 45.00 4.09
151 152 0.179000 ACCGGCAAGGAATAGAGCTG 59.821 55.000 0.00 0.00 45.00 4.24
154 155 1.813092 CGGCAAGGAATAGAGCTGCAT 60.813 52.381 1.02 0.00 34.66 3.96
155 156 1.878734 GGCAAGGAATAGAGCTGCATC 59.121 52.381 1.02 0.00 34.66 3.91
156 157 1.878734 GCAAGGAATAGAGCTGCATCC 59.121 52.381 1.02 1.49 33.19 3.51
157 158 2.141517 CAAGGAATAGAGCTGCATCCG 58.858 52.381 1.02 0.00 35.31 4.18
158 159 0.683973 AGGAATAGAGCTGCATCCGG 59.316 55.000 1.02 0.00 35.31 5.14
159 160 0.952984 GGAATAGAGCTGCATCCGGC 60.953 60.000 1.02 0.00 43.89 6.13
168 169 2.362375 GCATCCGGCAAGGGGAAA 60.362 61.111 0.00 0.00 43.97 3.13
170 171 1.540435 GCATCCGGCAAGGGGAAAAA 61.540 55.000 0.00 0.00 43.97 1.94
171 172 0.246360 CATCCGGCAAGGGGAAAAAC 59.754 55.000 0.00 0.00 41.52 2.43
172 173 0.114364 ATCCGGCAAGGGGAAAAACT 59.886 50.000 0.00 0.00 41.52 2.66
173 174 0.825840 TCCGGCAAGGGGAAAAACTG 60.826 55.000 0.00 0.00 41.52 3.16
176 177 1.419381 GGCAAGGGGAAAAACTGGAA 58.581 50.000 0.00 0.00 0.00 3.53
178 179 1.070134 GCAAGGGGAAAAACTGGAACC 59.930 52.381 0.00 0.00 0.00 3.62
179 180 2.677914 CAAGGGGAAAAACTGGAACCT 58.322 47.619 0.00 0.00 0.00 3.50
180 181 2.365293 CAAGGGGAAAAACTGGAACCTG 59.635 50.000 0.00 0.00 0.00 4.00
181 182 0.679505 GGGGAAAAACTGGAACCTGC 59.320 55.000 0.00 0.00 0.00 4.85
183 184 1.314730 GGAAAAACTGGAACCTGCGA 58.685 50.000 0.00 0.00 0.00 5.10
187 188 0.535102 AAACTGGAACCTGCGAGTGG 60.535 55.000 0.00 0.00 0.00 4.00
188 189 1.696097 AACTGGAACCTGCGAGTGGT 61.696 55.000 0.00 0.00 39.91 4.16
190 191 2.358737 GGAACCTGCGAGTGGTGG 60.359 66.667 0.00 0.00 37.93 4.61
192 193 1.374758 GAACCTGCGAGTGGTGGAG 60.375 63.158 0.00 0.00 37.93 3.86
194 195 3.699894 CCTGCGAGTGGTGGAGCT 61.700 66.667 0.00 0.00 0.00 4.09
195 196 2.433838 CTGCGAGTGGTGGAGCTG 60.434 66.667 0.00 0.00 0.00 4.24
196 197 4.687215 TGCGAGTGGTGGAGCTGC 62.687 66.667 0.00 0.00 0.00 5.25
197 198 4.687215 GCGAGTGGTGGAGCTGCA 62.687 66.667 2.72 2.72 0.00 4.41
198 199 2.267006 CGAGTGGTGGAGCTGCAT 59.733 61.111 12.38 0.00 0.00 3.96
199 200 1.812922 CGAGTGGTGGAGCTGCATC 60.813 63.158 12.38 12.29 0.00 3.91
200 201 1.451028 GAGTGGTGGAGCTGCATCC 60.451 63.158 16.61 16.43 40.03 3.51
201 202 2.821366 GTGGTGGAGCTGCATCCG 60.821 66.667 16.61 0.00 42.77 4.18
202 203 3.321648 TGGTGGAGCTGCATCCGT 61.322 61.111 16.61 0.00 42.77 4.69
204 205 1.675641 GGTGGAGCTGCATCCGTTT 60.676 57.895 12.38 0.00 42.77 3.60
206 207 1.675310 TGGAGCTGCATCCGTTTGG 60.675 57.895 2.72 0.00 42.77 3.28
209 210 4.481112 GCTGCATCCGTTTGGGCG 62.481 66.667 0.00 0.00 35.24 6.13
210 211 2.745884 CTGCATCCGTTTGGGCGA 60.746 61.111 0.00 0.00 35.24 5.54
211 212 2.281831 TGCATCCGTTTGGGCGAA 60.282 55.556 0.00 0.00 35.24 4.70
230 231 1.448013 GCTGGAACCGGCTAGTGTC 60.448 63.158 16.37 0.00 44.39 3.67
231 232 1.972198 CTGGAACCGGCTAGTGTCA 59.028 57.895 0.00 0.00 0.00 3.58
234 235 0.249398 GGAACCGGCTAGTGTCATGT 59.751 55.000 0.00 0.00 0.00 3.21
235 236 1.641577 GAACCGGCTAGTGTCATGTC 58.358 55.000 0.00 0.00 0.00 3.06
236 237 0.973632 AACCGGCTAGTGTCATGTCA 59.026 50.000 0.00 0.00 0.00 3.58
238 239 0.817654 CCGGCTAGTGTCATGTCAGA 59.182 55.000 0.00 0.00 0.00 3.27
240 241 2.263077 CGGCTAGTGTCATGTCAGAAC 58.737 52.381 0.00 0.00 0.00 3.01
241 242 2.094494 CGGCTAGTGTCATGTCAGAACT 60.094 50.000 0.00 0.00 0.00 3.01
242 243 3.257393 GGCTAGTGTCATGTCAGAACTG 58.743 50.000 0.00 0.00 0.00 3.16
243 244 2.670414 GCTAGTGTCATGTCAGAACTGC 59.330 50.000 0.00 0.00 0.00 4.40
244 245 2.916702 AGTGTCATGTCAGAACTGCA 57.083 45.000 0.00 0.00 0.00 4.41
245 246 3.198409 AGTGTCATGTCAGAACTGCAA 57.802 42.857 0.00 0.00 0.00 4.08
246 247 2.874701 AGTGTCATGTCAGAACTGCAAC 59.125 45.455 0.00 0.00 0.00 4.17
247 248 2.031682 GTGTCATGTCAGAACTGCAACC 60.032 50.000 0.00 0.00 0.00 3.77
248 249 1.195448 GTCATGTCAGAACTGCAACCG 59.805 52.381 0.00 0.00 0.00 4.44
249 250 0.518636 CATGTCAGAACTGCAACCGG 59.481 55.000 0.00 0.00 0.00 5.28
250 251 1.237285 ATGTCAGAACTGCAACCGGC 61.237 55.000 0.00 0.00 45.13 6.13
251 252 1.598130 GTCAGAACTGCAACCGGCT 60.598 57.895 0.00 0.00 45.15 5.52
252 253 0.320421 GTCAGAACTGCAACCGGCTA 60.320 55.000 0.00 0.00 45.15 3.93
253 254 0.320421 TCAGAACTGCAACCGGCTAC 60.320 55.000 0.00 0.00 45.15 3.58
254 255 0.602638 CAGAACTGCAACCGGCTACA 60.603 55.000 0.00 0.00 45.15 2.74
256 257 0.602905 GAACTGCAACCGGCTACAGT 60.603 55.000 15.86 15.86 44.96 3.55
257 258 0.682852 AACTGCAACCGGCTACAGTA 59.317 50.000 20.32 0.00 42.34 2.74
258 259 0.246635 ACTGCAACCGGCTACAGTAG 59.753 55.000 19.06 2.85 41.41 2.57
259 260 0.530744 CTGCAACCGGCTACAGTAGA 59.469 55.000 12.15 0.00 45.15 2.59
260 261 0.530744 TGCAACCGGCTACAGTAGAG 59.469 55.000 12.15 4.32 45.15 2.43
261 262 0.531200 GCAACCGGCTACAGTAGAGT 59.469 55.000 12.15 2.39 40.25 3.24
262 263 1.067071 GCAACCGGCTACAGTAGAGTT 60.067 52.381 12.15 8.26 40.25 3.01
263 264 2.607187 CAACCGGCTACAGTAGAGTTG 58.393 52.381 12.15 15.47 31.42 3.16
264 265 0.531200 ACCGGCTACAGTAGAGTTGC 59.469 55.000 12.15 0.00 39.10 4.17
265 266 0.530744 CCGGCTACAGTAGAGTTGCA 59.469 55.000 12.15 0.00 41.09 4.08
266 267 1.067142 CCGGCTACAGTAGAGTTGCAA 60.067 52.381 12.15 0.00 41.09 4.08
267 268 2.611971 CCGGCTACAGTAGAGTTGCAAA 60.612 50.000 12.15 0.00 41.09 3.68
280 281 4.025401 GCAAACGGCGAGTGGTGG 62.025 66.667 16.62 0.00 0.00 4.61
281 282 2.280524 CAAACGGCGAGTGGTGGA 60.281 61.111 16.62 0.00 0.00 4.02
283 284 4.681978 AACGGCGAGTGGTGGAGC 62.682 66.667 16.62 0.00 0.00 4.70
285 286 4.803426 CGGCGAGTGGTGGAGCTC 62.803 72.222 4.71 4.71 0.00 4.09
289 290 4.580835 GAGTGGTGGAGCTCGAAC 57.419 61.111 6.86 6.86 0.00 3.95
291 292 0.389166 GAGTGGTGGAGCTCGAACAG 60.389 60.000 17.58 0.00 0.00 3.16
292 293 1.374758 GTGGTGGAGCTCGAACAGG 60.375 63.158 17.58 0.00 0.00 4.00
293 294 2.435059 GGTGGAGCTCGAACAGGC 60.435 66.667 9.14 0.00 0.00 4.85
294 295 2.659610 GTGGAGCTCGAACAGGCT 59.340 61.111 7.83 0.00 41.88 4.58
296 297 2.125350 GGAGCTCGAACAGGCTGG 60.125 66.667 20.34 0.62 39.05 4.85
297 298 2.125350 GAGCTCGAACAGGCTGGG 60.125 66.667 20.34 7.78 39.05 4.45
298 299 2.925170 AGCTCGAACAGGCTGGGT 60.925 61.111 20.34 6.01 37.41 4.51
299 300 2.743928 GCTCGAACAGGCTGGGTG 60.744 66.667 20.34 7.61 0.00 4.61
301 302 1.669115 CTCGAACAGGCTGGGTGTG 60.669 63.158 20.34 4.76 0.00 3.82
304 305 1.968540 GAACAGGCTGGGTGTGCTC 60.969 63.158 20.34 0.00 0.00 4.26
305 306 3.497884 AACAGGCTGGGTGTGCTCC 62.498 63.158 20.34 0.00 0.00 4.70
312 313 3.897122 GGGTGTGCTCCCCCACAA 61.897 66.667 0.95 0.00 46.28 3.33
314 315 2.515901 GTGTGCTCCCCCACAACT 59.484 61.111 0.00 0.00 46.28 3.16
316 317 2.985847 GTGCTCCCCCACAACTGC 60.986 66.667 0.00 0.00 35.80 4.40
317 318 3.497115 TGCTCCCCCACAACTGCA 61.497 61.111 0.00 0.00 0.00 4.41
318 319 2.985847 GCTCCCCCACAACTGCAC 60.986 66.667 0.00 0.00 0.00 4.57
319 320 2.669569 CTCCCCCACAACTGCACG 60.670 66.667 0.00 0.00 0.00 5.34
320 321 3.476031 CTCCCCCACAACTGCACGT 62.476 63.158 0.00 0.00 0.00 4.49
322 323 2.111043 CCCCACAACTGCACGTCT 59.889 61.111 0.00 0.00 0.00 4.18
323 324 1.961277 CCCCACAACTGCACGTCTC 60.961 63.158 0.00 0.00 0.00 3.36
324 325 2.310233 CCCACAACTGCACGTCTCG 61.310 63.158 0.00 0.00 0.00 4.04
325 326 2.546321 CACAACTGCACGTCTCGC 59.454 61.111 0.00 0.00 0.00 5.03
326 327 2.661866 ACAACTGCACGTCTCGCC 60.662 61.111 0.00 0.00 0.00 5.54
328 329 3.616721 AACTGCACGTCTCGCCCT 61.617 61.111 0.00 0.00 0.00 5.19
329 330 3.575351 AACTGCACGTCTCGCCCTC 62.575 63.158 0.00 0.00 0.00 4.30
330 331 3.753434 CTGCACGTCTCGCCCTCT 61.753 66.667 0.00 0.00 0.00 3.69
333 334 2.179517 CACGTCTCGCCCTCTGTC 59.820 66.667 0.00 0.00 0.00 3.51
352 353 3.818787 CACCATCGCTTGCTGGCC 61.819 66.667 0.00 0.00 35.88 5.36
442 444 4.758251 CACCGGTCAGCATCGCCA 62.758 66.667 2.59 0.00 0.00 5.69
618 639 1.801178 GAGAAGAAAACGAGGTGCCAG 59.199 52.381 0.00 0.00 0.00 4.85
619 640 1.141053 AGAAGAAAACGAGGTGCCAGT 59.859 47.619 0.00 0.00 0.00 4.00
620 641 1.947456 GAAGAAAACGAGGTGCCAGTT 59.053 47.619 0.00 0.00 0.00 3.16
621 642 1.308998 AGAAAACGAGGTGCCAGTTG 58.691 50.000 0.00 0.00 0.00 3.16
622 643 0.317854 GAAAACGAGGTGCCAGTTGC 60.318 55.000 0.00 0.00 41.77 4.17
623 644 1.734388 AAAACGAGGTGCCAGTTGCC 61.734 55.000 0.00 0.00 40.16 4.52
755 792 2.047655 CTCGGCCGCCTACAAACA 60.048 61.111 23.51 0.00 0.00 2.83
805 5780 2.279851 TTGCGTCACCACCAGTCG 60.280 61.111 0.00 0.00 0.00 4.18
876 6454 2.684001 TTTAGTACCCATGGCACGAG 57.316 50.000 6.09 0.00 0.00 4.18
882 6460 2.124612 CCATGGCACGAGCATCCA 60.125 61.111 7.26 0.00 44.61 3.41
1291 6880 0.107945 GCGAGAGGCTGATTCTGGTT 60.108 55.000 0.00 0.00 39.11 3.67
1468 7057 7.865707 TCTTTTTCTTATTCTCTGTTGAGTGC 58.134 34.615 0.00 0.00 40.98 4.40
1495 7087 8.678593 TTTTTCTTCTTCTTTTCTACTCCCTC 57.321 34.615 0.00 0.00 0.00 4.30
1496 7088 6.361768 TTCTTCTTCTTTTCTACTCCCTCC 57.638 41.667 0.00 0.00 0.00 4.30
1497 7089 4.463186 TCTTCTTCTTTTCTACTCCCTCCG 59.537 45.833 0.00 0.00 0.00 4.63
1498 7090 3.775910 TCTTCTTTTCTACTCCCTCCGT 58.224 45.455 0.00 0.00 0.00 4.69
1499 7091 3.762823 TCTTCTTTTCTACTCCCTCCGTC 59.237 47.826 0.00 0.00 0.00 4.79
1500 7092 2.454538 TCTTTTCTACTCCCTCCGTCC 58.545 52.381 0.00 0.00 0.00 4.79
1501 7093 1.481363 CTTTTCTACTCCCTCCGTCCC 59.519 57.143 0.00 0.00 0.00 4.46
1502 7094 0.410663 TTTCTACTCCCTCCGTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
1503 7095 0.410663 TTCTACTCCCTCCGTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
1504 7096 0.410663 TCTACTCCCTCCGTCCCAAA 59.589 55.000 0.00 0.00 0.00 3.28
1505 7097 1.203212 TCTACTCCCTCCGTCCCAAAA 60.203 52.381 0.00 0.00 0.00 2.44
1506 7098 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
1507 7099 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
1508 7100 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
1509 7101 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
1510 7102 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
1511 7103 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
1512 7104 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
1513 7105 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
1514 7106 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
1515 7107 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
1516 7108 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
1517 7109 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
1518 7110 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
1519 7111 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
1520 7112 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
1521 7113 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
1522 7114 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
1523 7115 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
1524 7116 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
1525 7117 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
1533 7125 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
1534 7126 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
1536 7128 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
1537 7129 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
1548 7140 9.752274 GTCTAAATACGGATGTATCTAGTTACG 57.248 37.037 6.50 0.00 40.42 3.18
1549 7141 9.494271 TCTAAATACGGATGTATCTAGTTACGT 57.506 33.333 5.54 5.54 40.42 3.57
1554 7146 7.792374 ACGGATGTATCTAGTTACGTTTAGA 57.208 36.000 0.00 0.00 0.00 2.10
1555 7147 8.388484 ACGGATGTATCTAGTTACGTTTAGAT 57.612 34.615 16.25 16.25 39.36 1.98
1556 7148 9.494271 ACGGATGTATCTAGTTACGTTTAGATA 57.506 33.333 14.85 14.85 37.67 1.98
1563 7155 7.792374 TCTAGTTACGTTTAGATACATCCGT 57.208 36.000 0.00 0.00 0.00 4.69
1564 7156 8.887036 TCTAGTTACGTTTAGATACATCCGTA 57.113 34.615 0.00 0.00 0.00 4.02
1565 7157 9.494271 TCTAGTTACGTTTAGATACATCCGTAT 57.506 33.333 0.00 0.00 41.16 3.06
1581 7173 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
1582 7174 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
1583 7175 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
1584 7176 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
1585 7177 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
1586 7178 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
1597 7189 9.322776 CAAATCTAAGACAAGAATTTTGAGACG 57.677 33.333 7.18 0.00 31.51 4.18
1598 7190 7.602517 ATCTAAGACAAGAATTTTGAGACGG 57.397 36.000 7.18 0.00 0.00 4.79
1599 7191 6.755206 TCTAAGACAAGAATTTTGAGACGGA 58.245 36.000 7.18 0.00 0.00 4.69
1600 7192 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
1601 7193 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
1602 7194 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
1603 7195 3.072476 ACAAGAATTTTGAGACGGAGGGA 59.928 43.478 7.18 0.00 0.00 4.20
1604 7196 3.618690 AGAATTTTGAGACGGAGGGAG 57.381 47.619 0.00 0.00 0.00 4.30
1605 7197 2.907042 AGAATTTTGAGACGGAGGGAGT 59.093 45.455 0.00 0.00 0.00 3.85
1606 7198 4.094476 AGAATTTTGAGACGGAGGGAGTA 58.906 43.478 0.00 0.00 0.00 2.59
1614 7206 2.496470 AGACGGAGGGAGTATTTGTGAC 59.504 50.000 0.00 0.00 0.00 3.67
1622 7214 5.983540 AGGGAGTATTTGTGACAGAATCTC 58.016 41.667 0.00 0.00 0.00 2.75
1688 7283 8.051901 TGACCAAGATATCCACTATATGTACG 57.948 38.462 0.00 0.00 30.53 3.67
1693 7288 8.947115 CAAGATATCCACTATATGTACGAGTCA 58.053 37.037 0.00 0.00 30.53 3.41
2547 9613 7.630242 ACAACATGATTCTCCAAATATTCGT 57.370 32.000 0.00 0.00 0.00 3.85
2595 9661 3.515901 ACTCTTCGCCTTATCCACTTTCT 59.484 43.478 0.00 0.00 0.00 2.52
3144 10224 4.251543 TGCAAGACAAGTATTCGAGACA 57.748 40.909 2.79 0.00 0.00 3.41
3215 10295 6.802348 GTCAAATATGCTTCTGATCATGATGC 59.198 38.462 14.30 10.42 35.85 3.91
3303 10391 2.091885 AGGACACCGATATTGGCCAAAT 60.092 45.455 24.71 16.79 45.86 2.32
3358 10446 6.479972 AACCTTCGGTATGATCATTACTCA 57.520 37.500 14.65 0.00 33.12 3.41
3400 10488 3.503099 GGAAACCCCCACAGCCTA 58.497 61.111 0.00 0.00 0.00 3.93
3416 10504 0.037605 CCTAAACGCCTCCTCAACGT 60.038 55.000 0.00 0.00 42.81 3.99
3419 11379 2.035237 AAACGCCTCCTCAACGTCCA 62.035 55.000 0.00 0.00 39.49 4.02
3529 11492 7.500559 ACAAATAAAAGCCCAATTTTTGCTGTA 59.499 29.630 0.00 0.00 35.08 2.74
3624 11592 2.863401 AAGGAAAAAGTCGTGGCAAC 57.137 45.000 0.00 0.00 0.00 4.17
3645 11613 6.348498 CAACTTCCATCTGTACATACATGGA 58.652 40.000 20.05 20.05 41.26 3.41
3652 11620 4.769688 TCTGTACATACATGGAGCCAAAG 58.230 43.478 0.00 0.00 35.36 2.77
3965 11993 9.921637 GTAAAATGAAGGTAAATTTGATGTGGA 57.078 29.630 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.212900 GAACCGGTGCATGGGAAAGC 62.213 60.000 8.52 0.00 0.00 3.51
6 7 2.751436 CTGGAACCGGTGCATGGG 60.751 66.667 16.38 8.47 0.00 4.00
7 8 3.443045 GCTGGAACCGGTGCATGG 61.443 66.667 16.38 4.55 0.00 3.66
8 9 2.672651 TGCTGGAACCGGTGCATG 60.673 61.111 16.38 7.33 0.00 4.06
9 10 2.672996 GTGCTGGAACCGGTGCAT 60.673 61.111 18.98 0.00 37.76 3.96
10 11 4.947147 GGTGCTGGAACCGGTGCA 62.947 66.667 16.38 14.46 0.00 4.57
17 18 0.589708 GGTGTTTACGGTGCTGGAAC 59.410 55.000 0.00 0.00 0.00 3.62
18 19 0.881159 CGGTGTTTACGGTGCTGGAA 60.881 55.000 0.00 0.00 0.00 3.53
19 20 1.301087 CGGTGTTTACGGTGCTGGA 60.301 57.895 0.00 0.00 0.00 3.86
20 21 2.322081 CCGGTGTTTACGGTGCTGG 61.322 63.158 0.00 0.00 46.03 4.85
21 22 3.249999 CCGGTGTTTACGGTGCTG 58.750 61.111 0.00 0.00 46.03 4.41
27 28 0.881159 TGCTGGAACCGGTGTTTACG 60.881 55.000 8.52 0.00 33.97 3.18
30 31 1.826487 GGTGCTGGAACCGGTGTTT 60.826 57.895 8.52 0.00 33.97 2.83
31 32 2.203294 GGTGCTGGAACCGGTGTT 60.203 61.111 8.52 0.00 37.42 3.32
57 58 3.117171 GAGCTGTGCTGCGACCAG 61.117 66.667 0.00 8.79 39.88 4.00
61 62 3.690108 CTAGCGAGCTGTGCTGCGA 62.690 63.158 17.98 0.25 43.85 5.10
63 64 3.562150 GCTAGCGAGCTGTGCTGC 61.562 66.667 17.98 14.97 45.98 5.25
76 77 0.452950 CGAGCACCGCTATACGCTAG 60.453 60.000 0.00 0.00 39.88 3.42
77 78 0.881600 TCGAGCACCGCTATACGCTA 60.882 55.000 0.00 0.00 39.88 4.26
78 79 2.184830 TCGAGCACCGCTATACGCT 61.185 57.895 0.00 0.00 39.88 5.07
79 80 2.009755 GTCGAGCACCGCTATACGC 61.010 63.158 0.00 0.00 39.88 4.42
80 81 1.721476 CGTCGAGCACCGCTATACG 60.721 63.158 7.81 7.81 39.88 3.06
82 83 2.330393 GCGTCGAGCACCGCTATA 59.670 61.111 10.50 0.00 46.08 1.31
92 93 3.626680 TTCCAGCTTCGGCGTCGAG 62.627 63.158 13.59 8.40 46.75 4.04
100 101 4.697756 TGGCCGGTTCCAGCTTCG 62.698 66.667 1.90 0.00 0.00 3.79
101 102 2.747855 CTGGCCGGTTCCAGCTTC 60.748 66.667 14.32 0.00 46.11 3.86
107 108 4.410400 CCTCCACTGGCCGGTTCC 62.410 72.222 16.73 0.00 0.00 3.62
108 109 3.316573 CTCCTCCACTGGCCGGTTC 62.317 68.421 16.73 0.00 0.00 3.62
109 110 3.322466 CTCCTCCACTGGCCGGTT 61.322 66.667 16.73 0.00 0.00 4.44
114 115 0.391793 GTTGTAGCTCCTCCACTGGC 60.392 60.000 0.00 0.00 0.00 4.85
115 116 0.250513 GGTTGTAGCTCCTCCACTGG 59.749 60.000 0.00 0.00 0.00 4.00
116 117 0.108615 CGGTTGTAGCTCCTCCACTG 60.109 60.000 0.00 0.00 0.00 3.66
117 118 1.258445 CCGGTTGTAGCTCCTCCACT 61.258 60.000 0.00 0.00 0.00 4.00
119 120 2.656069 GCCGGTTGTAGCTCCTCCA 61.656 63.158 1.90 0.00 0.00 3.86
120 121 2.180159 TTGCCGGTTGTAGCTCCTCC 62.180 60.000 1.90 0.00 0.00 4.30
121 122 0.741221 CTTGCCGGTTGTAGCTCCTC 60.741 60.000 1.90 0.00 0.00 3.71
122 123 1.296715 CTTGCCGGTTGTAGCTCCT 59.703 57.895 1.90 0.00 0.00 3.69
123 124 1.745489 CCTTGCCGGTTGTAGCTCC 60.745 63.158 1.90 0.00 0.00 4.70
124 125 0.321298 TTCCTTGCCGGTTGTAGCTC 60.321 55.000 1.90 0.00 0.00 4.09
126 127 1.940613 CTATTCCTTGCCGGTTGTAGC 59.059 52.381 1.90 0.00 0.00 3.58
127 128 3.458189 CTCTATTCCTTGCCGGTTGTAG 58.542 50.000 1.90 0.00 0.00 2.74
129 130 1.679032 GCTCTATTCCTTGCCGGTTGT 60.679 52.381 1.90 0.00 0.00 3.32
134 135 0.462581 TGCAGCTCTATTCCTTGCCG 60.463 55.000 0.00 0.00 33.98 5.69
135 136 1.878734 GATGCAGCTCTATTCCTTGCC 59.121 52.381 0.00 0.00 33.98 4.52
136 137 1.878734 GGATGCAGCTCTATTCCTTGC 59.121 52.381 0.22 0.00 35.42 4.01
140 141 0.952984 GCCGGATGCAGCTCTATTCC 60.953 60.000 5.05 0.00 40.77 3.01
141 142 2.537863 GCCGGATGCAGCTCTATTC 58.462 57.895 5.05 0.00 40.77 1.75
151 152 1.540435 TTTTTCCCCTTGCCGGATGC 61.540 55.000 5.05 0.00 41.77 3.91
154 155 0.825840 CAGTTTTTCCCCTTGCCGGA 60.826 55.000 5.05 0.00 33.16 5.14
155 156 1.665442 CAGTTTTTCCCCTTGCCGG 59.335 57.895 0.00 0.00 0.00 6.13
156 157 0.825840 TCCAGTTTTTCCCCTTGCCG 60.826 55.000 0.00 0.00 0.00 5.69
157 158 1.070134 GTTCCAGTTTTTCCCCTTGCC 59.930 52.381 0.00 0.00 0.00 4.52
158 159 1.070134 GGTTCCAGTTTTTCCCCTTGC 59.930 52.381 0.00 0.00 0.00 4.01
159 160 2.365293 CAGGTTCCAGTTTTTCCCCTTG 59.635 50.000 0.00 0.00 0.00 3.61
161 162 1.757764 GCAGGTTCCAGTTTTTCCCCT 60.758 52.381 0.00 0.00 0.00 4.79
164 165 1.266989 CTCGCAGGTTCCAGTTTTTCC 59.733 52.381 0.00 0.00 0.00 3.13
167 168 1.308998 CACTCGCAGGTTCCAGTTTT 58.691 50.000 0.00 0.00 0.00 2.43
168 169 0.535102 CCACTCGCAGGTTCCAGTTT 60.535 55.000 0.00 0.00 0.00 2.66
170 171 2.140792 ACCACTCGCAGGTTCCAGT 61.141 57.895 0.00 0.00 35.33 4.00
171 172 1.669115 CACCACTCGCAGGTTCCAG 60.669 63.158 0.00 0.00 37.23 3.86
172 173 2.425592 CACCACTCGCAGGTTCCA 59.574 61.111 0.00 0.00 37.23 3.53
173 174 2.358737 CCACCACTCGCAGGTTCC 60.359 66.667 0.00 0.00 37.23 3.62
176 177 4.008933 GCTCCACCACTCGCAGGT 62.009 66.667 0.00 0.00 40.85 4.00
178 179 2.433838 CAGCTCCACCACTCGCAG 60.434 66.667 0.00 0.00 0.00 5.18
179 180 4.687215 GCAGCTCCACCACTCGCA 62.687 66.667 0.00 0.00 0.00 5.10
180 181 3.965539 ATGCAGCTCCACCACTCGC 62.966 63.158 0.00 0.00 0.00 5.03
181 182 1.812922 GATGCAGCTCCACCACTCG 60.813 63.158 0.00 0.00 0.00 4.18
183 184 2.673523 GGATGCAGCTCCACCACT 59.326 61.111 0.22 0.00 35.24 4.00
187 188 1.503542 CAAACGGATGCAGCTCCAC 59.496 57.895 0.22 0.00 34.78 4.02
188 189 1.675310 CCAAACGGATGCAGCTCCA 60.675 57.895 0.22 0.00 34.78 3.86
190 191 3.056313 GCCCAAACGGATGCAGCTC 62.056 63.158 0.22 0.00 0.00 4.09
192 193 4.481112 CGCCCAAACGGATGCAGC 62.481 66.667 0.00 0.00 0.00 5.25
194 195 2.281831 TTCGCCCAAACGGATGCA 60.282 55.556 0.00 0.00 0.00 3.96
195 196 2.485122 CTTCGCCCAAACGGATGC 59.515 61.111 0.00 0.00 0.00 3.91
196 197 2.040544 AGCTTCGCCCAAACGGATG 61.041 57.895 0.00 0.00 0.00 3.51
197 198 2.040544 CAGCTTCGCCCAAACGGAT 61.041 57.895 0.00 0.00 0.00 4.18
198 199 2.668212 CAGCTTCGCCCAAACGGA 60.668 61.111 0.00 0.00 0.00 4.69
199 200 3.737172 CCAGCTTCGCCCAAACGG 61.737 66.667 0.00 0.00 0.00 4.44
200 201 2.258013 TTCCAGCTTCGCCCAAACG 61.258 57.895 0.00 0.00 0.00 3.60
201 202 1.285950 GTTCCAGCTTCGCCCAAAC 59.714 57.895 0.00 0.00 0.00 2.93
202 203 1.901464 GGTTCCAGCTTCGCCCAAA 60.901 57.895 0.00 0.00 0.00 3.28
204 205 4.697756 CGGTTCCAGCTTCGCCCA 62.698 66.667 0.00 0.00 0.00 5.36
209 210 0.741221 CACTAGCCGGTTCCAGCTTC 60.741 60.000 1.90 0.00 40.56 3.86
210 211 1.296715 CACTAGCCGGTTCCAGCTT 59.703 57.895 1.90 0.00 40.56 3.74
211 212 1.889530 GACACTAGCCGGTTCCAGCT 61.890 60.000 1.90 4.92 43.20 4.24
214 215 0.249120 CATGACACTAGCCGGTTCCA 59.751 55.000 1.90 0.00 0.00 3.53
215 216 0.249398 ACATGACACTAGCCGGTTCC 59.751 55.000 1.90 0.00 0.00 3.62
216 217 1.067142 TGACATGACACTAGCCGGTTC 60.067 52.381 1.90 0.00 0.00 3.62
217 218 0.973632 TGACATGACACTAGCCGGTT 59.026 50.000 1.90 0.00 0.00 4.44
218 219 0.532573 CTGACATGACACTAGCCGGT 59.467 55.000 1.90 0.00 0.00 5.28
221 222 3.257393 CAGTTCTGACATGACACTAGCC 58.743 50.000 0.00 0.00 0.00 3.93
222 223 2.670414 GCAGTTCTGACATGACACTAGC 59.330 50.000 0.00 0.00 0.00 3.42
223 224 3.917988 TGCAGTTCTGACATGACACTAG 58.082 45.455 0.00 0.00 0.00 2.57
224 225 4.058124 GTTGCAGTTCTGACATGACACTA 58.942 43.478 0.00 0.00 0.00 2.74
225 226 2.874701 GTTGCAGTTCTGACATGACACT 59.125 45.455 0.00 0.00 0.00 3.55
227 228 2.221169 GGTTGCAGTTCTGACATGACA 58.779 47.619 0.00 0.00 0.00 3.58
230 231 0.518636 CCGGTTGCAGTTCTGACATG 59.481 55.000 3.84 0.00 0.00 3.21
231 232 1.237285 GCCGGTTGCAGTTCTGACAT 61.237 55.000 1.90 0.00 40.77 3.06
234 235 0.320421 GTAGCCGGTTGCAGTTCTGA 60.320 55.000 1.90 0.00 44.83 3.27
235 236 0.602638 TGTAGCCGGTTGCAGTTCTG 60.603 55.000 4.67 0.00 44.83 3.02
236 237 0.320771 CTGTAGCCGGTTGCAGTTCT 60.321 55.000 24.80 3.80 44.83 3.01
238 239 0.682852 TACTGTAGCCGGTTGCAGTT 59.317 50.000 38.05 24.84 40.45 3.16
240 241 0.530744 TCTACTGTAGCCGGTTGCAG 59.469 55.000 29.71 29.71 44.83 4.41
241 242 0.530744 CTCTACTGTAGCCGGTTGCA 59.469 55.000 9.04 9.04 44.83 4.08
242 243 0.531200 ACTCTACTGTAGCCGGTTGC 59.469 55.000 9.98 0.00 41.71 4.17
243 244 2.607187 CAACTCTACTGTAGCCGGTTG 58.393 52.381 21.21 21.21 0.00 3.77
244 245 1.067071 GCAACTCTACTGTAGCCGGTT 60.067 52.381 9.98 0.00 0.00 4.44
245 246 0.531200 GCAACTCTACTGTAGCCGGT 59.469 55.000 9.98 6.13 0.00 5.28
246 247 0.530744 TGCAACTCTACTGTAGCCGG 59.469 55.000 9.98 0.00 0.00 6.13
247 248 2.363788 TTGCAACTCTACTGTAGCCG 57.636 50.000 9.98 6.24 0.00 5.52
248 249 2.412089 CGTTTGCAACTCTACTGTAGCC 59.588 50.000 9.98 0.00 0.00 3.93
249 250 2.412089 CCGTTTGCAACTCTACTGTAGC 59.588 50.000 9.98 0.00 0.00 3.58
250 251 2.412089 GCCGTTTGCAACTCTACTGTAG 59.588 50.000 8.55 8.55 40.77 2.74
251 252 2.409975 GCCGTTTGCAACTCTACTGTA 58.590 47.619 0.00 0.00 40.77 2.74
252 253 1.226746 GCCGTTTGCAACTCTACTGT 58.773 50.000 0.00 0.00 40.77 3.55
253 254 0.163788 CGCCGTTTGCAACTCTACTG 59.836 55.000 0.00 0.00 41.33 2.74
254 255 0.032952 TCGCCGTTTGCAACTCTACT 59.967 50.000 0.00 0.00 41.33 2.57
256 257 0.032952 ACTCGCCGTTTGCAACTCTA 59.967 50.000 0.00 0.00 41.33 2.43
257 258 1.227556 ACTCGCCGTTTGCAACTCT 60.228 52.632 0.00 0.00 41.33 3.24
258 259 1.082756 CACTCGCCGTTTGCAACTC 60.083 57.895 0.00 0.00 41.33 3.01
259 260 2.542907 CCACTCGCCGTTTGCAACT 61.543 57.895 0.00 0.00 41.33 3.16
260 261 2.051345 CCACTCGCCGTTTGCAAC 60.051 61.111 0.00 0.00 41.33 4.17
261 262 2.515057 ACCACTCGCCGTTTGCAA 60.515 55.556 0.00 0.00 41.33 4.08
262 263 3.276091 CACCACTCGCCGTTTGCA 61.276 61.111 0.00 0.00 41.33 4.08
263 264 4.025401 CCACCACTCGCCGTTTGC 62.025 66.667 0.00 0.00 0.00 3.68
264 265 2.280524 TCCACCACTCGCCGTTTG 60.281 61.111 0.00 0.00 0.00 2.93
265 266 2.030562 CTCCACCACTCGCCGTTT 59.969 61.111 0.00 0.00 0.00 3.60
266 267 4.681978 GCTCCACCACTCGCCGTT 62.682 66.667 0.00 0.00 0.00 4.44
268 269 4.803426 GAGCTCCACCACTCGCCG 62.803 72.222 0.87 0.00 0.00 6.46
272 273 0.389166 CTGTTCGAGCTCCACCACTC 60.389 60.000 8.47 0.00 0.00 3.51
273 274 1.668294 CTGTTCGAGCTCCACCACT 59.332 57.895 8.47 0.00 0.00 4.00
274 275 1.374758 CCTGTTCGAGCTCCACCAC 60.375 63.158 8.47 0.19 0.00 4.16
275 276 3.059982 CCTGTTCGAGCTCCACCA 58.940 61.111 8.47 0.83 0.00 4.17
276 277 2.435059 GCCTGTTCGAGCTCCACC 60.435 66.667 8.47 0.00 0.00 4.61
279 280 2.125350 CCAGCCTGTTCGAGCTCC 60.125 66.667 8.47 0.00 37.18 4.70
280 281 2.125350 CCCAGCCTGTTCGAGCTC 60.125 66.667 2.73 2.73 37.18 4.09
281 282 2.925170 ACCCAGCCTGTTCGAGCT 60.925 61.111 0.00 0.00 40.89 4.09
283 284 1.669115 CACACCCAGCCTGTTCGAG 60.669 63.158 0.00 0.00 0.00 4.04
284 285 2.425592 CACACCCAGCCTGTTCGA 59.574 61.111 0.00 0.00 0.00 3.71
285 286 3.357079 GCACACCCAGCCTGTTCG 61.357 66.667 0.00 0.00 0.00 3.95
287 288 2.113986 GAGCACACCCAGCCTGTT 59.886 61.111 0.00 0.00 0.00 3.16
288 289 3.958860 GGAGCACACCCAGCCTGT 61.959 66.667 0.00 0.00 0.00 4.00
296 297 2.597510 GTTGTGGGGGAGCACACC 60.598 66.667 0.00 0.00 39.23 4.16
297 298 1.898574 CAGTTGTGGGGGAGCACAC 60.899 63.158 0.00 0.00 38.08 3.82
298 299 2.515398 CAGTTGTGGGGGAGCACA 59.485 61.111 0.00 0.00 0.00 4.57
299 300 2.985847 GCAGTTGTGGGGGAGCAC 60.986 66.667 0.00 0.00 0.00 4.40
301 302 2.985847 GTGCAGTTGTGGGGGAGC 60.986 66.667 0.00 0.00 0.00 4.70
304 305 2.978010 GACGTGCAGTTGTGGGGG 60.978 66.667 0.00 0.00 0.00 5.40
305 306 1.961277 GAGACGTGCAGTTGTGGGG 60.961 63.158 0.00 0.00 0.00 4.96
307 308 2.943345 GCGAGACGTGCAGTTGTGG 61.943 63.158 0.00 0.00 0.00 4.17
309 310 2.661866 GGCGAGACGTGCAGTTGT 60.662 61.111 0.00 0.00 0.00 3.32
312 313 4.057428 GAGGGCGAGACGTGCAGT 62.057 66.667 0.00 0.00 0.00 4.40
314 315 4.056125 CAGAGGGCGAGACGTGCA 62.056 66.667 0.00 0.00 0.00 4.57
316 317 2.179517 GACAGAGGGCGAGACGTG 59.820 66.667 0.00 0.00 0.00 4.49
317 318 3.432588 CGACAGAGGGCGAGACGT 61.433 66.667 0.00 0.00 0.00 4.34
318 319 4.838486 GCGACAGAGGGCGAGACG 62.838 72.222 0.00 0.00 0.00 4.18
319 320 3.749064 TGCGACAGAGGGCGAGAC 61.749 66.667 0.00 0.00 0.00 3.36
320 321 3.749064 GTGCGACAGAGGGCGAGA 61.749 66.667 0.00 0.00 0.00 4.04
323 324 4.457496 ATGGTGCGACAGAGGGCG 62.457 66.667 0.00 0.00 0.00 6.13
324 325 2.512515 GATGGTGCGACAGAGGGC 60.513 66.667 0.00 0.00 0.00 5.19
325 326 2.202797 CGATGGTGCGACAGAGGG 60.203 66.667 0.00 0.00 0.00 4.30
326 327 2.842394 AAGCGATGGTGCGACAGAGG 62.842 60.000 0.00 0.00 40.67 3.69
328 329 1.737735 CAAGCGATGGTGCGACAGA 60.738 57.895 0.00 0.00 40.67 3.41
329 330 2.780643 CAAGCGATGGTGCGACAG 59.219 61.111 0.00 0.00 40.67 3.51
330 331 3.422303 GCAAGCGATGGTGCGACA 61.422 61.111 0.00 0.00 40.67 4.35
411 412 4.729918 GGTGCCCTGGGAGCTGTG 62.730 72.222 19.27 0.00 0.00 3.66
527 538 1.894756 CGTCGGTTTTGAAGGCCCA 60.895 57.895 0.00 0.00 0.00 5.36
618 639 1.068055 TCGAACGAAGACTAGGGCAAC 60.068 52.381 0.00 0.00 0.00 4.17
619 640 1.201647 CTCGAACGAAGACTAGGGCAA 59.798 52.381 0.00 0.00 0.00 4.52
620 641 0.809385 CTCGAACGAAGACTAGGGCA 59.191 55.000 0.00 0.00 0.00 5.36
621 642 1.093159 TCTCGAACGAAGACTAGGGC 58.907 55.000 0.00 0.00 0.00 5.19
622 643 4.023878 CCTTATCTCGAACGAAGACTAGGG 60.024 50.000 0.00 0.00 0.00 3.53
623 644 4.815308 TCCTTATCTCGAACGAAGACTAGG 59.185 45.833 0.00 8.23 0.00 3.02
777 5752 3.491639 GTGGTGACGCAACGCATATATAA 59.508 43.478 3.99 0.00 41.67 0.98
778 5753 3.054166 GTGGTGACGCAACGCATATATA 58.946 45.455 3.99 0.00 41.67 0.86
779 5754 1.864711 GTGGTGACGCAACGCATATAT 59.135 47.619 3.99 0.00 41.67 0.86
780 5755 1.282817 GTGGTGACGCAACGCATATA 58.717 50.000 3.99 0.00 41.67 0.86
781 5756 1.366111 GGTGGTGACGCAACGCATAT 61.366 55.000 9.93 0.00 44.70 1.78
782 5757 2.030401 GGTGGTGACGCAACGCATA 61.030 57.895 9.93 0.00 44.70 3.14
783 5758 3.353836 GGTGGTGACGCAACGCAT 61.354 61.111 9.93 0.00 44.70 4.73
784 5759 4.840005 TGGTGGTGACGCAACGCA 62.840 61.111 9.93 0.00 44.70 5.24
785 5760 4.012895 CTGGTGGTGACGCAACGC 62.013 66.667 0.58 0.58 44.70 4.84
786 5761 2.587753 ACTGGTGGTGACGCAACG 60.588 61.111 0.00 0.00 44.70 4.10
787 5762 2.594962 CGACTGGTGGTGACGCAAC 61.595 63.158 0.00 0.00 44.70 4.17
788 5763 2.279851 CGACTGGTGGTGACGCAA 60.280 61.111 0.00 0.00 44.70 4.85
805 5780 1.085091 TAGACGAGCCACGAGAGTTC 58.915 55.000 7.86 0.00 46.40 3.01
1195 6784 0.532573 ACGAGTGCACCTCATCGATT 59.467 50.000 26.78 8.06 40.48 3.34
1201 6790 1.285950 CTCGAACGAGTGCACCTCA 59.714 57.895 14.63 0.00 40.48 3.86
1489 7081 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
1490 7082 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
1491 7083 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
1492 7084 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
1493 7085 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
1494 7086 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
1495 7087 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
1496 7088 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
1497 7089 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
1498 7090 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
1499 7091 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
1507 7099 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
1508 7100 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
1510 7102 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
1511 7103 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
1522 7114 9.752274 CGTAACTAGATACATCCGTATTTAGAC 57.248 37.037 13.92 5.26 41.85 2.59
1523 7115 9.494271 ACGTAACTAGATACATCCGTATTTAGA 57.506 33.333 13.92 0.00 41.85 2.10
1528 7120 9.494271 TCTAAACGTAACTAGATACATCCGTAT 57.506 33.333 10.40 0.00 41.16 3.06
1529 7121 8.887036 TCTAAACGTAACTAGATACATCCGTA 57.113 34.615 10.40 0.00 0.00 4.02
1530 7122 7.792374 TCTAAACGTAACTAGATACATCCGT 57.208 36.000 10.40 0.16 0.00 4.69
1537 7129 9.494271 ACGGATGTATCTAAACGTAACTAGATA 57.506 33.333 13.79 13.79 36.50 1.98
1538 7130 8.388484 ACGGATGTATCTAAACGTAACTAGAT 57.612 34.615 15.23 15.23 38.24 1.98
1539 7131 7.792374 ACGGATGTATCTAAACGTAACTAGA 57.208 36.000 0.00 0.00 32.30 2.43
1555 7147 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
1556 7148 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
1557 7149 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
1558 7150 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
1559 7151 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
1560 7152 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
1571 7163 9.322776 CGTCTCAAAATTCTTGTCTTAGATTTG 57.677 33.333 0.00 0.00 30.65 2.32
1572 7164 8.507249 CCGTCTCAAAATTCTTGTCTTAGATTT 58.493 33.333 0.00 0.00 0.00 2.17
1573 7165 7.878127 TCCGTCTCAAAATTCTTGTCTTAGATT 59.122 33.333 0.00 0.00 0.00 2.40
1574 7166 7.386851 TCCGTCTCAAAATTCTTGTCTTAGAT 58.613 34.615 0.00 0.00 0.00 1.98
1575 7167 6.755206 TCCGTCTCAAAATTCTTGTCTTAGA 58.245 36.000 0.00 0.00 0.00 2.10
1576 7168 6.091441 CCTCCGTCTCAAAATTCTTGTCTTAG 59.909 42.308 0.00 0.00 0.00 2.18
1577 7169 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
1578 7170 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
1579 7171 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
1580 7172 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
1581 7173 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
1582 7174 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
1583 7175 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
1584 7176 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
1585 7177 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
1586 7178 5.437191 AATACTCCCTCCGTCTCAAAATT 57.563 39.130 0.00 0.00 0.00 1.82
1587 7179 5.186198 CAAATACTCCCTCCGTCTCAAAAT 58.814 41.667 0.00 0.00 0.00 1.82
1588 7180 4.041198 ACAAATACTCCCTCCGTCTCAAAA 59.959 41.667 0.00 0.00 0.00 2.44
1589 7181 3.581332 ACAAATACTCCCTCCGTCTCAAA 59.419 43.478 0.00 0.00 0.00 2.69
1590 7182 3.056107 CACAAATACTCCCTCCGTCTCAA 60.056 47.826 0.00 0.00 0.00 3.02
1591 7183 2.496070 CACAAATACTCCCTCCGTCTCA 59.504 50.000 0.00 0.00 0.00 3.27
1592 7184 2.758979 TCACAAATACTCCCTCCGTCTC 59.241 50.000 0.00 0.00 0.00 3.36
1593 7185 2.496470 GTCACAAATACTCCCTCCGTCT 59.504 50.000 0.00 0.00 0.00 4.18
1594 7186 2.232941 TGTCACAAATACTCCCTCCGTC 59.767 50.000 0.00 0.00 0.00 4.79
1595 7187 2.233922 CTGTCACAAATACTCCCTCCGT 59.766 50.000 0.00 0.00 0.00 4.69
1596 7188 2.496070 TCTGTCACAAATACTCCCTCCG 59.504 50.000 0.00 0.00 0.00 4.63
1597 7189 4.553330 TTCTGTCACAAATACTCCCTCC 57.447 45.455 0.00 0.00 0.00 4.30
1598 7190 5.983540 AGATTCTGTCACAAATACTCCCTC 58.016 41.667 0.00 0.00 0.00 4.30
1599 7191 5.723887 AGAGATTCTGTCACAAATACTCCCT 59.276 40.000 0.00 0.00 0.00 4.20
1600 7192 5.814705 CAGAGATTCTGTCACAAATACTCCC 59.185 44.000 0.00 0.00 39.58 4.30
1601 7193 6.900568 CAGAGATTCTGTCACAAATACTCC 57.099 41.667 0.00 0.00 39.58 3.85
1688 7283 2.607187 CCTCACCAACATACGTGACTC 58.393 52.381 0.00 0.00 35.25 3.36
1693 7288 1.079405 CGGCCTCACCAACATACGT 60.079 57.895 0.00 0.00 39.03 3.57
1945 7803 7.461182 TTTTGGAATACACTACCTCCATTTG 57.539 36.000 0.00 0.00 37.78 2.32
2303 9295 8.795786 TTGCATCAACACAAGATAAGTTAAAC 57.204 30.769 0.00 0.00 0.00 2.01
2595 9661 8.052141 TGAATTGAATCACATAATGGGTCTACA 58.948 33.333 0.00 0.00 0.00 2.74
3215 10295 6.978343 TGAATGGTTTCCAGTAAGTAATCG 57.022 37.500 0.00 0.00 36.75 3.34
3245 10325 4.006989 TCCACACCTTCCACATAATTTCG 58.993 43.478 0.00 0.00 0.00 3.46
3279 10367 3.512496 TGGCCAATATCGGTGTCCTATA 58.488 45.455 0.61 0.00 0.00 1.31
3400 10488 1.301479 GGACGTTGAGGAGGCGTTT 60.301 57.895 0.00 0.00 39.06 3.60
3416 10504 4.422592 AGGGATAAGTCCTGTAGGTATGGA 59.577 45.833 0.00 0.00 44.44 3.41
3624 11592 4.993584 GCTCCATGTATGTACAGATGGAAG 59.006 45.833 23.98 19.86 41.94 3.46
3645 11613 9.710900 CCTTACAATTTTAATCTTTCTTTGGCT 57.289 29.630 0.00 0.00 0.00 4.75
3882 11885 1.252175 TTAGGCGCTCATGGCAAAAA 58.748 45.000 7.64 0.00 41.91 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.