Multiple sequence alignment - TraesCS3A01G454400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G454400 chr3A 100.000 4717 0 0 3148 7864 692619821 692624537 0.000000e+00 8711.0
1 TraesCS3A01G454400 chr3A 100.000 2894 0 0 1 2894 692616674 692619567 0.000000e+00 5345.0
2 TraesCS3A01G454400 chr3A 86.875 640 62 11 1 619 555108104 555107466 0.000000e+00 697.0
3 TraesCS3A01G454400 chr3A 82.963 675 84 17 1 645 703638039 703637366 1.470000e-161 580.0
4 TraesCS3A01G454400 chr3A 100.000 166 0 0 4493 4658 30990162 30989997 2.760000e-79 307.0
5 TraesCS3A01G454400 chr3D 94.890 1683 55 10 6199 7864 555483113 555484781 0.000000e+00 2603.0
6 TraesCS3A01G454400 chr3D 94.032 1575 41 13 4656 6197 555481271 555482825 0.000000e+00 2338.0
7 TraesCS3A01G454400 chr3D 91.350 1711 96 20 1180 2864 555477182 555478866 0.000000e+00 2292.0
8 TraesCS3A01G454400 chr3D 95.939 1305 31 9 3192 4484 555479884 555481178 0.000000e+00 2097.0
9 TraesCS3A01G454400 chr3D 83.788 586 74 10 80 645 352946323 352946907 3.230000e-148 536.0
10 TraesCS3A01G454400 chr3D 83.912 547 50 22 685 1222 555476653 555477170 9.170000e-134 488.0
11 TraesCS3A01G454400 chr3D 100.000 38 0 0 2857 2894 555479547 555479584 3.940000e-08 71.3
12 TraesCS3A01G454400 chr3B 96.134 1345 39 6 3150 4485 738695834 738697174 0.000000e+00 2183.0
13 TraesCS3A01G454400 chr3B 91.612 1371 68 16 1544 2891 738694381 738695727 0.000000e+00 1851.0
14 TraesCS3A01G454400 chr3B 96.446 816 22 5 4900 5712 738697717 738698528 0.000000e+00 1339.0
15 TraesCS3A01G454400 chr3B 93.133 830 27 9 6772 7598 738699588 738700390 0.000000e+00 1190.0
16 TraesCS3A01G454400 chr3B 98.090 576 11 0 6199 6774 738698851 738699426 0.000000e+00 1003.0
17 TraesCS3A01G454400 chr3B 85.351 826 73 32 664 1470 738693539 738694335 0.000000e+00 811.0
18 TraesCS3A01G454400 chr3B 94.318 264 13 1 4656 4917 738697267 738697530 3.420000e-108 403.0
19 TraesCS3A01G454400 chr3B 97.076 171 3 1 5929 6097 738698602 738698772 3.590000e-73 287.0
20 TraesCS3A01G454400 chr3B 92.593 108 8 0 7757 7864 738702146 738702253 1.060000e-33 156.0
21 TraesCS3A01G454400 chr2D 88.073 654 63 10 4 644 552138658 552138007 0.000000e+00 761.0
22 TraesCS3A01G454400 chr2D 85.481 675 67 10 1 644 511531396 511530722 0.000000e+00 675.0
23 TraesCS3A01G454400 chr2D 82.753 661 90 15 1 645 166104277 166103625 1.150000e-157 568.0
24 TraesCS3A01G454400 chr5D 87.275 668 61 8 1 644 510829930 510829263 0.000000e+00 741.0
25 TraesCS3A01G454400 chr5D 85.113 665 76 14 1 645 529523730 529523069 0.000000e+00 658.0
26 TraesCS3A01G454400 chr5D 97.452 157 4 0 5710 5866 67584616 67584772 1.300000e-67 268.0
27 TraesCS3A01G454400 chr5D 92.179 179 11 2 5710 5888 434383536 434383361 4.710000e-62 250.0
28 TraesCS3A01G454400 chr5D 88.318 214 13 8 5710 5915 498497141 498497350 6.090000e-61 246.0
29 TraesCS3A01G454400 chr2A 85.113 665 79 10 1 645 571451031 571450367 0.000000e+00 662.0
30 TraesCS3A01G454400 chr7D 85.061 656 83 10 2 645 170600988 170601640 0.000000e+00 654.0
31 TraesCS3A01G454400 chr4D 84.948 671 71 14 1 641 471814348 471813678 0.000000e+00 652.0
32 TraesCS3A01G454400 chr4D 97.452 157 4 0 5710 5866 17480620 17480776 1.300000e-67 268.0
33 TraesCS3A01G454400 chr4D 92.045 176 12 2 5710 5884 380333567 380333393 6.090000e-61 246.0
34 TraesCS3A01G454400 chr7A 84.731 668 77 14 1 646 207894063 207893399 0.000000e+00 645.0
35 TraesCS3A01G454400 chr4A 84.234 666 81 20 1 645 61314330 61314992 1.860000e-175 627.0
36 TraesCS3A01G454400 chr4A 99.405 168 0 1 4493 4660 697644353 697644187 3.570000e-78 303.0
37 TraesCS3A01G454400 chr4A 95.062 162 8 0 5710 5871 596221175 596221336 1.010000e-63 255.0
38 TraesCS3A01G454400 chr6A 84.342 562 64 9 4 544 426608924 426608366 5.400000e-146 529.0
39 TraesCS3A01G454400 chr6B 96.277 188 4 3 4493 4680 1160093 1159909 9.910000e-79 305.0
40 TraesCS3A01G454400 chr6B 97.207 179 2 3 4493 4669 25589118 25588941 4.610000e-77 300.0
41 TraesCS3A01G454400 chr2B 99.408 169 0 1 4493 4660 69371782 69371614 9.910000e-79 305.0
42 TraesCS3A01G454400 chr2B 96.237 186 3 4 4487 4669 136167834 136168018 1.280000e-77 302.0
43 TraesCS3A01G454400 chr2B 87.500 200 20 5 5714 5910 587162831 587163028 7.940000e-55 226.0
44 TraesCS3A01G454400 chr1B 96.721 183 4 2 4493 4675 374010318 374010138 3.570000e-78 303.0
45 TraesCS3A01G454400 chr1A 98.266 173 3 0 4487 4659 33224948 33225120 3.570000e-78 303.0
46 TraesCS3A01G454400 chr1A 94.545 165 9 0 5710 5874 127703913 127703749 1.010000e-63 255.0
47 TraesCS3A01G454400 chr5B 97.207 179 3 2 4477 4654 21402727 21402550 1.280000e-77 302.0
48 TraesCS3A01G454400 chr5B 95.706 163 7 0 5710 5872 274462399 274462561 6.050000e-66 263.0
49 TraesCS3A01G454400 chrUn 88.235 51 4 2 4842 4892 329448077 329448125 8.520000e-05 60.2
50 TraesCS3A01G454400 chr7B 92.308 39 3 0 4857 4895 13817761 13817723 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G454400 chr3A 692616674 692624537 7863 False 7028.000000 8711 100.000000 1 7864 2 chr3A.!!$F1 7863
1 TraesCS3A01G454400 chr3A 555107466 555108104 638 True 697.000000 697 86.875000 1 619 1 chr3A.!!$R2 618
2 TraesCS3A01G454400 chr3A 703637366 703638039 673 True 580.000000 580 82.963000 1 645 1 chr3A.!!$R3 644
3 TraesCS3A01G454400 chr3D 555476653 555484781 8128 False 1648.216667 2603 93.353833 685 7864 6 chr3D.!!$F2 7179
4 TraesCS3A01G454400 chr3D 352946323 352946907 584 False 536.000000 536 83.788000 80 645 1 chr3D.!!$F1 565
5 TraesCS3A01G454400 chr3B 738693539 738702253 8714 False 1024.777778 2183 93.861444 664 7864 9 chr3B.!!$F1 7200
6 TraesCS3A01G454400 chr2D 552138007 552138658 651 True 761.000000 761 88.073000 4 644 1 chr2D.!!$R3 640
7 TraesCS3A01G454400 chr2D 511530722 511531396 674 True 675.000000 675 85.481000 1 644 1 chr2D.!!$R2 643
8 TraesCS3A01G454400 chr2D 166103625 166104277 652 True 568.000000 568 82.753000 1 645 1 chr2D.!!$R1 644
9 TraesCS3A01G454400 chr5D 510829263 510829930 667 True 741.000000 741 87.275000 1 644 1 chr5D.!!$R2 643
10 TraesCS3A01G454400 chr5D 529523069 529523730 661 True 658.000000 658 85.113000 1 645 1 chr5D.!!$R3 644
11 TraesCS3A01G454400 chr2A 571450367 571451031 664 True 662.000000 662 85.113000 1 645 1 chr2A.!!$R1 644
12 TraesCS3A01G454400 chr7D 170600988 170601640 652 False 654.000000 654 85.061000 2 645 1 chr7D.!!$F1 643
13 TraesCS3A01G454400 chr4D 471813678 471814348 670 True 652.000000 652 84.948000 1 641 1 chr4D.!!$R2 640
14 TraesCS3A01G454400 chr7A 207893399 207894063 664 True 645.000000 645 84.731000 1 646 1 chr7A.!!$R1 645
15 TraesCS3A01G454400 chr4A 61314330 61314992 662 False 627.000000 627 84.234000 1 645 1 chr4A.!!$F1 644
16 TraesCS3A01G454400 chr6A 426608366 426608924 558 True 529.000000 529 84.342000 4 544 1 chr6A.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
742 792 0.035439 CTAGCTCGGGCCAAAAAGGA 60.035 55.0 2.00 0.00 41.22 3.36 F
881 940 0.178964 CCCAACTCCCAAGAGCCAAA 60.179 55.0 0.00 0.00 44.65 3.28 F
1551 1716 0.730494 GTTGTTCGAGCAAGCATGGC 60.730 55.0 15.45 0.00 32.57 4.40 F
1736 1901 0.877071 AACCGCTTTGTGATGAGCTG 59.123 50.0 0.00 0.00 36.76 4.24 F
2795 2985 1.143813 ATCTGATTACCTGGGCCTGG 58.856 55.0 26.31 26.31 0.00 4.45 F
2802 2992 2.484868 TACCTGGGCCTGGATGTCCA 62.485 60.0 33.41 9.84 45.30 4.02 F
4510 5401 0.111253 AAGTGGTAAAGCTGCTGCCT 59.889 50.0 12.44 2.45 40.80 4.75 F
4511 5402 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.0 12.44 8.34 40.80 4.35 F
4513 5404 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.0 12.44 0.00 40.80 3.16 F
4514 5405 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.0 12.44 0.00 40.80 3.33 F
4581 5472 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.0 0.00 0.00 37.28 3.67 F
4582 5473 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.0 0.00 0.00 34.81 2.73 F
4608 5499 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.0 23.81 13.97 37.50 3.46 F
4654 5545 0.611618 CATGCACCAGGTTGCCCTTA 60.612 55.0 10.46 0.00 42.25 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2680 2870 0.036164 CACTTCCCCGAATGTGGTCA 59.964 55.000 0.00 0.00 0.00 4.02 R
2802 2992 0.957395 CAGAAACGCCACATCAGCCT 60.957 55.000 0.00 0.00 0.00 4.58 R
3324 4204 2.512692 AGCCAGCAACCAATGACATA 57.487 45.000 0.00 0.00 0.00 2.29 R
3487 4367 6.825213 TCTTGCACAGTAAGAGCATATTTCAT 59.175 34.615 0.00 0.00 43.38 2.57 R
4505 5396 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85 R
4560 5451 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71 R
5722 6825 1.999634 ATGCACCCCTGTCCATAGCC 62.000 60.000 0.00 0.00 0.00 3.93 R
5802 6905 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43 R
6197 7330 2.746904 CGGCATTGTCTCACAACCATAA 59.253 45.455 0.00 0.00 41.40 1.90 R
6528 7947 2.738964 GCCGAGAAGGACTATGGACAAC 60.739 54.545 0.00 0.00 45.00 3.32 R
6709 8128 4.705991 TGCTTAATCATGGATTTGACTGCA 59.294 37.500 0.00 0.00 33.95 4.41 R
6755 8174 0.677731 TGTAACAGCATGCCTGGCTC 60.678 55.000 21.03 9.01 46.14 4.70 R
6827 8410 3.309556 CCTTGGCCCCTATCCTGTAAAAA 60.310 47.826 0.00 0.00 0.00 1.94 R
6893 8476 1.067060 CTGATGACGAGAATGCGGGTA 59.933 52.381 0.00 0.00 35.12 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.529309 GGCACTGGGATCCTCTTCC 59.471 63.158 12.58 3.41 34.83 3.46
141 142 1.666553 CGGCCTAGTGCAACGACAA 60.667 57.895 0.00 0.00 45.86 3.18
154 155 0.880278 ACGACAAGTTGATGCGCTGT 60.880 50.000 10.54 1.56 0.00 4.40
163 164 3.706563 GATGCGCTGTCTCTGCCGA 62.707 63.158 9.73 0.00 0.00 5.54
314 330 3.866582 CCAGATGAGGACGGGGGC 61.867 72.222 0.00 0.00 0.00 5.80
421 445 6.183360 GGTCGTCATAAATTATGTTGACCGTT 60.183 38.462 26.68 0.00 43.85 4.44
472 496 1.860078 GAACAACAAGGAGACGCGG 59.140 57.895 12.47 0.00 0.00 6.46
507 553 3.930229 CCGACGAATTCCAGACACAATTA 59.070 43.478 0.00 0.00 0.00 1.40
508 554 4.032900 CCGACGAATTCCAGACACAATTAG 59.967 45.833 0.00 0.00 0.00 1.73
509 555 4.862574 CGACGAATTCCAGACACAATTAGA 59.137 41.667 0.00 0.00 0.00 2.10
584 633 2.547007 GCGTTGGGCCAACACTTTTATT 60.547 45.455 39.74 0.00 43.70 1.40
588 637 1.271102 GGGCCAACACTTTTATTCGCA 59.729 47.619 4.39 0.00 0.00 5.10
619 669 0.671163 AAACGCGGGCAGACGAAATA 60.671 50.000 12.47 0.00 35.47 1.40
621 671 0.671163 ACGCGGGCAGACGAAATAAA 60.671 50.000 12.47 0.00 35.47 1.40
628 678 1.332904 GCAGACGAAATAAATCGCCCG 60.333 52.381 0.00 0.00 46.51 6.13
646 696 4.201871 CGCCCGATTGAAGTTGCTTTAATA 60.202 41.667 0.01 0.00 31.43 0.98
647 697 5.273944 GCCCGATTGAAGTTGCTTTAATAG 58.726 41.667 0.01 0.86 31.43 1.73
648 698 5.163652 GCCCGATTGAAGTTGCTTTAATAGT 60.164 40.000 0.01 0.00 31.43 2.12
649 699 6.037830 GCCCGATTGAAGTTGCTTTAATAGTA 59.962 38.462 0.01 0.00 31.43 1.82
650 700 7.414762 GCCCGATTGAAGTTGCTTTAATAGTAA 60.415 37.037 0.01 0.00 31.43 2.24
651 701 8.122952 CCCGATTGAAGTTGCTTTAATAGTAAG 58.877 37.037 0.01 0.00 31.43 2.34
652 702 8.122952 CCGATTGAAGTTGCTTTAATAGTAAGG 58.877 37.037 0.01 0.00 31.43 2.69
653 703 7.640240 CGATTGAAGTTGCTTTAATAGTAAGGC 59.360 37.037 9.81 9.81 41.47 4.35
654 704 6.753107 TGAAGTTGCTTTAATAGTAAGGCC 57.247 37.500 13.53 0.00 40.64 5.19
655 705 6.242396 TGAAGTTGCTTTAATAGTAAGGCCA 58.758 36.000 13.53 0.95 40.64 5.36
656 706 6.889722 TGAAGTTGCTTTAATAGTAAGGCCAT 59.110 34.615 13.53 0.00 40.64 4.40
657 707 8.050325 TGAAGTTGCTTTAATAGTAAGGCCATA 58.950 33.333 13.53 0.00 40.64 2.74
658 708 8.451908 AAGTTGCTTTAATAGTAAGGCCATAG 57.548 34.615 13.53 0.00 40.64 2.23
659 709 7.802117 AGTTGCTTTAATAGTAAGGCCATAGA 58.198 34.615 13.53 0.00 40.64 1.98
660 710 7.715686 AGTTGCTTTAATAGTAAGGCCATAGAC 59.284 37.037 13.53 5.82 40.64 2.59
661 711 7.374975 TGCTTTAATAGTAAGGCCATAGACT 57.625 36.000 13.53 4.71 40.64 3.24
662 712 8.486942 TGCTTTAATAGTAAGGCCATAGACTA 57.513 34.615 13.53 7.03 40.64 2.59
671 721 1.413077 GGCCATAGACTAGACGCCTTT 59.587 52.381 0.00 0.00 33.50 3.11
680 730 1.993370 CTAGACGCCTTTCTTCAACGG 59.007 52.381 0.00 0.00 0.00 4.44
724 774 9.388506 CAAAATTAGAGACCACTGATTGATACT 57.611 33.333 0.00 0.00 0.00 2.12
742 792 0.035439 CTAGCTCGGGCCAAAAAGGA 60.035 55.000 2.00 0.00 41.22 3.36
743 793 0.623723 TAGCTCGGGCCAAAAAGGAT 59.376 50.000 2.00 0.00 41.22 3.24
744 794 0.623723 AGCTCGGGCCAAAAAGGATA 59.376 50.000 2.00 0.00 41.22 2.59
745 795 1.005450 AGCTCGGGCCAAAAAGGATAA 59.995 47.619 2.00 0.00 41.22 1.75
785 836 0.657368 GAAAGCGCGCGATTTATGGG 60.657 55.000 40.98 7.44 33.61 4.00
793 844 2.816689 CGCGATTTATGGGTCACTACA 58.183 47.619 0.00 0.00 0.00 2.74
794 845 3.191669 CGCGATTTATGGGTCACTACAA 58.808 45.455 0.00 0.00 0.00 2.41
795 846 3.619483 CGCGATTTATGGGTCACTACAAA 59.381 43.478 0.00 0.00 0.00 2.83
796 847 4.260212 CGCGATTTATGGGTCACTACAAAG 60.260 45.833 0.00 0.00 0.00 2.77
797 848 4.873827 GCGATTTATGGGTCACTACAAAGA 59.126 41.667 0.00 0.00 0.00 2.52
817 868 0.837940 AAAGATACCGCCTTCTCCCC 59.162 55.000 0.00 0.00 0.00 4.81
868 927 3.566210 CCCACCACCGTCCCAACT 61.566 66.667 0.00 0.00 0.00 3.16
869 928 2.032071 CCACCACCGTCCCAACTC 59.968 66.667 0.00 0.00 0.00 3.01
874 933 1.302511 CACCGTCCCAACTCCCAAG 60.303 63.158 0.00 0.00 0.00 3.61
877 936 1.376037 CGTCCCAACTCCCAAGAGC 60.376 63.158 0.00 0.00 44.65 4.09
878 937 1.002011 GTCCCAACTCCCAAGAGCC 60.002 63.158 0.00 0.00 44.65 4.70
879 938 1.463214 TCCCAACTCCCAAGAGCCA 60.463 57.895 0.00 0.00 44.65 4.75
880 939 1.065410 TCCCAACTCCCAAGAGCCAA 61.065 55.000 0.00 0.00 44.65 4.52
881 940 0.178964 CCCAACTCCCAAGAGCCAAA 60.179 55.000 0.00 0.00 44.65 3.28
920 979 4.329545 TGGCCGCCTCCTTCACAC 62.330 66.667 11.61 0.00 0.00 3.82
926 985 2.328099 GCCTCCTTCACACAAGCCG 61.328 63.158 0.00 0.00 0.00 5.52
927 986 2.328099 CCTCCTTCACACAAGCCGC 61.328 63.158 0.00 0.00 0.00 6.53
928 987 2.281484 TCCTTCACACAAGCCGCC 60.281 61.111 0.00 0.00 0.00 6.13
929 988 3.365265 CCTTCACACAAGCCGCCC 61.365 66.667 0.00 0.00 0.00 6.13
930 989 2.594303 CTTCACACAAGCCGCCCA 60.594 61.111 0.00 0.00 0.00 5.36
931 990 2.594303 TTCACACAAGCCGCCCAG 60.594 61.111 0.00 0.00 0.00 4.45
1173 1260 0.774908 AACCCACCCTCCAATTTCGA 59.225 50.000 0.00 0.00 0.00 3.71
1177 1264 2.446435 CCACCCTCCAATTTCGATTGT 58.554 47.619 0.00 0.00 0.00 2.71
1185 1272 2.258755 CAATTTCGATTGTTTCCCCGC 58.741 47.619 0.00 0.00 0.00 6.13
1186 1273 1.834188 ATTTCGATTGTTTCCCCGCT 58.166 45.000 0.00 0.00 0.00 5.52
1189 1276 2.885113 GATTGTTTCCCCGCTGCC 59.115 61.111 0.00 0.00 0.00 4.85
1243 1384 2.044946 GCCAGGCTGGGGTTAGTG 60.045 66.667 33.43 7.21 38.19 2.74
1247 1388 3.739613 GGCTGGGGTTAGTGGGGG 61.740 72.222 0.00 0.00 0.00 5.40
1350 1494 1.875419 GCGCGTGCATTTGTTTGTCC 61.875 55.000 17.66 0.00 42.15 4.02
1360 1504 2.089600 TTGTTTGTCCCCGGGAAATT 57.910 45.000 26.32 0.00 31.38 1.82
1470 1616 1.221566 GGGTGCATTTGGGCCATTC 59.778 57.895 7.26 0.00 0.00 2.67
1500 1665 4.214758 ACACGCTCACAATTTAGTTAACCC 59.785 41.667 0.88 0.00 0.00 4.11
1503 1668 4.668177 CGCTCACAATTTAGTTAACCCGTG 60.668 45.833 0.88 1.70 0.00 4.94
1506 1671 2.821378 ACAATTTAGTTAACCCGTGGCC 59.179 45.455 0.88 0.00 0.00 5.36
1518 1683 0.740737 CCGTGGCCATGAGGAAATTC 59.259 55.000 27.13 0.00 36.89 2.17
1523 1688 1.063717 GGCCATGAGGAAATTCTGGGA 60.064 52.381 0.00 0.00 36.89 4.37
1551 1716 0.730494 GTTGTTCGAGCAAGCATGGC 60.730 55.000 15.45 0.00 32.57 4.40
1564 1729 1.098712 GCATGGCGGGGTTTCGAATA 61.099 55.000 0.00 0.00 0.00 1.75
1636 1801 3.812609 TGCTCAGTTTGATGCTAACGAAA 59.187 39.130 0.00 0.00 0.00 3.46
1637 1802 4.455533 TGCTCAGTTTGATGCTAACGAAAT 59.544 37.500 0.00 0.00 0.00 2.17
1662 1827 2.810274 TGTCAGAGCTGCTGTTGAATTC 59.190 45.455 7.01 0.00 45.14 2.17
1675 1840 6.039605 TGCTGTTGAATTCTGATGTTTGAAGA 59.960 34.615 7.05 0.00 0.00 2.87
1676 1841 7.088905 GCTGTTGAATTCTGATGTTTGAAGAT 58.911 34.615 7.05 0.00 0.00 2.40
1677 1842 8.239314 GCTGTTGAATTCTGATGTTTGAAGATA 58.761 33.333 7.05 0.00 0.00 1.98
1730 1895 3.074412 CTCCAGTAAACCGCTTTGTGAT 58.926 45.455 0.00 0.00 0.00 3.06
1736 1901 0.877071 AACCGCTTTGTGATGAGCTG 59.123 50.000 0.00 0.00 36.76 4.24
1787 1974 6.827727 TGGAGGGAAAATGTAGCTATCTTAC 58.172 40.000 0.00 0.00 0.00 2.34
1839 2028 9.220906 TCCTGTTATGTACCTTCTTAATACCAT 57.779 33.333 0.00 0.00 0.00 3.55
1864 2053 4.953579 TCTTATTACCATCCCTTTTGTGGC 59.046 41.667 0.00 0.00 36.47 5.01
1881 2070 1.962807 TGGCTTGTTCACCCTTGATTG 59.037 47.619 0.00 0.00 0.00 2.67
1887 2076 2.361757 TGTTCACCCTTGATTGCACAAG 59.638 45.455 9.53 9.53 44.50 3.16
1928 2117 7.139896 TGCAAATGTTTCGTATTACATCACT 57.860 32.000 0.00 0.00 34.04 3.41
1929 2118 7.020602 TGCAAATGTTTCGTATTACATCACTG 58.979 34.615 0.00 0.00 34.04 3.66
1993 2182 2.697751 TGTGGGAGTTTTGGTTGATTGG 59.302 45.455 0.00 0.00 0.00 3.16
2020 2209 7.510675 TTTAGGGGTCTTATTTGTCAGAGAT 57.489 36.000 0.00 0.00 0.00 2.75
2037 2227 8.222637 TGTCAGAGATTGGAATATGATGGAATT 58.777 33.333 0.00 0.00 0.00 2.17
2118 2308 6.200286 TGACGTGTTTTCTTCACTAGATTGAC 59.800 38.462 0.00 0.00 34.14 3.18
2172 2362 2.710377 AGCACTCATAATTGCGTTGGA 58.290 42.857 0.00 0.00 43.87 3.53
2290 2480 2.099427 GTGTACTTCGGAGGGATGTCTC 59.901 54.545 0.00 0.00 35.01 3.36
2381 2571 6.513393 CGGTATCTGCTTTTCTTCAAACACTT 60.513 38.462 0.00 0.00 0.00 3.16
2419 2609 7.921786 TTTAGATAAACTTGTCCATGGACTG 57.078 36.000 37.92 31.37 44.80 3.51
2536 2726 4.265073 AGAATTGAGGGTTACAGTCATGC 58.735 43.478 0.00 0.00 0.00 4.06
2795 2985 1.143813 ATCTGATTACCTGGGCCTGG 58.856 55.000 26.31 26.31 0.00 4.45
2802 2992 2.484868 TACCTGGGCCTGGATGTCCA 62.485 60.000 33.41 9.84 45.30 4.02
3185 4064 3.204526 GCTCAGAAGACCTCATCATTGG 58.795 50.000 0.00 0.00 0.00 3.16
3187 4066 4.141846 GCTCAGAAGACCTCATCATTGGTA 60.142 45.833 0.00 0.00 36.59 3.25
3301 4181 6.179756 TCAAATGGCTGACATGTAGTGTTAT 58.820 36.000 0.00 0.00 42.36 1.89
3302 4182 7.334858 TCAAATGGCTGACATGTAGTGTTATA 58.665 34.615 0.00 0.00 42.36 0.98
3303 4183 7.992608 TCAAATGGCTGACATGTAGTGTTATAT 59.007 33.333 0.00 0.00 42.36 0.86
3305 4185 7.734924 ATGGCTGACATGTAGTGTTATATTG 57.265 36.000 0.00 0.00 42.36 1.90
3306 4186 5.527214 TGGCTGACATGTAGTGTTATATTGC 59.473 40.000 0.00 0.00 42.36 3.56
3307 4187 5.760253 GGCTGACATGTAGTGTTATATTGCT 59.240 40.000 0.00 0.00 42.36 3.91
3308 4188 6.260936 GGCTGACATGTAGTGTTATATTGCTT 59.739 38.462 0.00 0.00 42.36 3.91
3823 4710 5.759273 GGGAATCTCATCTCAGTGAAATGAG 59.241 44.000 24.77 24.77 46.70 2.90
4102 4989 4.916983 TTCCTTGGAGTGTGAACATTTG 57.083 40.909 0.00 0.00 0.00 2.32
4182 5069 5.805728 TCCTTGGTCATCTTTCTTTACCTC 58.194 41.667 0.00 0.00 0.00 3.85
4458 5349 6.166279 GTTCCATCAAGTGTCAACTATCTGA 58.834 40.000 0.00 0.00 34.77 3.27
4494 5385 6.892658 TTGTTCAGTTATACATGGCAAAGT 57.107 33.333 0.00 0.00 0.00 2.66
4495 5386 6.252967 TGTTCAGTTATACATGGCAAAGTG 57.747 37.500 0.00 2.31 0.00 3.16
4496 5387 5.182950 TGTTCAGTTATACATGGCAAAGTGG 59.817 40.000 0.00 0.00 0.00 4.00
4497 5388 4.917385 TCAGTTATACATGGCAAAGTGGT 58.083 39.130 0.00 0.00 0.00 4.16
4501 5392 7.120579 TCAGTTATACATGGCAAAGTGGTAAAG 59.879 37.037 0.00 3.58 0.00 1.85
4502 5393 4.718940 ATACATGGCAAAGTGGTAAAGC 57.281 40.909 0.00 0.00 0.00 3.51
4503 5394 2.597455 ACATGGCAAAGTGGTAAAGCT 58.403 42.857 0.00 0.00 0.00 3.74
4505 5396 0.673437 TGGCAAAGTGGTAAAGCTGC 59.327 50.000 0.00 0.00 0.00 5.25
4506 5397 0.961753 GGCAAAGTGGTAAAGCTGCT 59.038 50.000 0.00 0.00 0.00 4.24
4509 5400 0.961753 AAAGTGGTAAAGCTGCTGCC 59.038 50.000 12.44 7.07 40.80 4.85
4510 5401 0.111253 AAGTGGTAAAGCTGCTGCCT 59.889 50.000 12.44 2.45 40.80 4.75
4511 5402 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
4512 5403 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
4513 5404 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
4514 5405 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
4515 5406 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
4516 5407 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
4517 5408 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
4518 5409 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
4520 5411 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
4521 5412 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
4522 5413 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
4538 5429 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
4539 5430 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
4540 5431 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
4541 5432 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
4542 5433 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
4543 5434 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
4546 5437 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
4547 5438 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
4561 5452 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
4563 5454 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
4564 5455 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
4565 5456 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
4567 5458 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
4568 5459 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
4569 5460 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
4570 5461 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
4574 5465 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
4575 5466 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
4577 5468 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
4578 5469 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
4579 5470 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
4580 5471 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
4581 5472 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
4582 5473 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
4583 5474 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
4584 5475 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
4585 5476 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
4586 5477 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
4587 5478 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
4588 5479 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
4589 5480 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
4590 5481 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
4591 5482 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
4592 5483 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
4593 5484 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
4594 5485 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
4595 5486 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
4596 5487 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
4597 5488 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
4598 5489 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
4603 5494 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
4604 5495 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
4605 5496 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
4606 5497 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
4607 5498 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
4608 5499 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
4609 5500 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
4610 5501 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
4611 5502 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
4612 5503 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
4613 5504 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
4614 5505 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
4615 5506 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
4616 5507 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
4617 5508 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
4618 5509 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
4619 5510 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
4620 5511 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
4621 5512 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
4622 5513 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
4647 5538 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
4648 5539 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
4649 5540 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
4650 5541 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
4651 5542 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
4652 5543 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
4653 5544 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
4654 5545 0.611618 CATGCACCAGGTTGCCCTTA 60.612 55.000 10.46 0.00 42.25 2.69
4790 5681 6.352516 AGAACACCTAGGAGCAAAGATATTG 58.647 40.000 17.98 0.44 0.00 1.90
4842 5735 5.174395 CCAATTCTGAAGTAGAGGACTGTG 58.826 45.833 0.00 0.00 38.87 3.66
5079 6177 4.209080 CGTGCGTGATCATGCTCTTAAATA 59.791 41.667 33.63 13.67 43.48 1.40
5105 6206 5.673337 TTTTCAGCTGTGTGTGTTCTATC 57.327 39.130 14.67 0.00 0.00 2.08
5114 6215 7.391554 AGCTGTGTGTGTTCTATCATTTTGTAT 59.608 33.333 0.00 0.00 0.00 2.29
5373 6476 3.555966 GAGGGCTGTATGCTGGTTTAAT 58.444 45.455 0.00 0.00 42.39 1.40
5496 6599 7.403312 TTTACATGTACCCTCCAATGATTTG 57.597 36.000 4.68 0.00 0.00 2.32
5538 6641 3.515630 TCTCAGCTGCGAGTTTTATCAG 58.484 45.455 9.47 0.00 34.46 2.90
5705 6808 8.637986 TGTAACAATTTATTCAAGACAGGCTTT 58.362 29.630 0.00 0.00 33.60 3.51
5802 6905 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
5850 6953 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
5851 6954 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
5852 6955 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
5853 6956 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
5854 6957 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
5855 6958 5.140747 AGGCTTTGTTGTTGTTGTTGTTA 57.859 34.783 0.00 0.00 0.00 2.41
5856 6959 5.729510 AGGCTTTGTTGTTGTTGTTGTTAT 58.270 33.333 0.00 0.00 0.00 1.89
5857 6960 6.169800 AGGCTTTGTTGTTGTTGTTGTTATT 58.830 32.000 0.00 0.00 0.00 1.40
5858 6961 6.091986 AGGCTTTGTTGTTGTTGTTGTTATTG 59.908 34.615 0.00 0.00 0.00 1.90
5859 6962 6.128418 GGCTTTGTTGTTGTTGTTGTTATTGT 60.128 34.615 0.00 0.00 0.00 2.71
5860 6963 7.294473 GCTTTGTTGTTGTTGTTGTTATTGTT 58.706 30.769 0.00 0.00 0.00 2.83
5861 6964 8.436200 GCTTTGTTGTTGTTGTTGTTATTGTTA 58.564 29.630 0.00 0.00 0.00 2.41
5886 6989 7.672983 TTGTAGGCTTGTTTCTTCATAAGAG 57.327 36.000 0.00 0.00 39.03 2.85
6103 7234 7.010160 AGAAAAGATTCCAGGTAATTGGTCAA 58.990 34.615 0.00 0.00 39.35 3.18
6105 7236 6.780457 AAGATTCCAGGTAATTGGTCAATG 57.220 37.500 0.00 0.00 39.35 2.82
6113 7244 6.092533 CCAGGTAATTGGTCAATGAAATTTGC 59.907 38.462 0.00 0.00 30.94 3.68
6121 7252 5.526846 TGGTCAATGAAATTTGCTGTTTTCC 59.473 36.000 0.00 0.00 31.22 3.13
6128 7259 3.683365 ATTTGCTGTTTTCCCATCCAC 57.317 42.857 0.00 0.00 0.00 4.02
6130 7261 2.307496 TGCTGTTTTCCCATCCACAT 57.693 45.000 0.00 0.00 0.00 3.21
6146 7277 7.988599 CCCATCCACATGTTTCATGAAATAAAT 59.011 33.333 23.05 14.30 32.36 1.40
6412 7831 0.988063 TCCCATCGGTGGTGAAATCA 59.012 50.000 15.03 0.00 44.48 2.57
6528 7947 6.425114 TCTTTCTCTCCTCGATTTGTTTTGAG 59.575 38.462 0.00 0.00 0.00 3.02
6755 8174 6.512415 GCATTTGCCTTGCTAAGTATCTACTG 60.512 42.308 0.00 0.00 35.50 2.74
6827 8410 8.362639 ACATGCAAGTTACTGAATCTGAAATTT 58.637 29.630 0.00 0.00 0.00 1.82
6893 8476 6.721318 TCAATTGGATAAAGGAGCTAACAGT 58.279 36.000 5.42 0.00 0.00 3.55
7178 8762 3.655486 CAGGCATTTTTGTTGAGATGCA 58.345 40.909 9.09 0.00 44.99 3.96
7227 8811 8.827177 TCACTTAACTGTTATCTTTGTCGATT 57.173 30.769 0.37 0.00 0.00 3.34
7235 8819 5.408909 TGTTATCTTTGTCGATTTGCGGTTA 59.591 36.000 0.00 0.00 41.33 2.85
7244 8828 5.019498 GTCGATTTGCGGTTACATTTGTAG 58.981 41.667 0.00 0.00 41.33 2.74
7245 8829 4.691685 TCGATTTGCGGTTACATTTGTAGT 59.308 37.500 0.00 0.00 41.33 2.73
7246 8830 5.868258 TCGATTTGCGGTTACATTTGTAGTA 59.132 36.000 0.00 0.00 41.33 1.82
7297 8883 3.492756 GCGTTGGTTATGTTTTTGCATGT 59.507 39.130 0.00 0.00 0.00 3.21
7351 8937 0.605050 TGAATACACAAGCCTGCGCA 60.605 50.000 10.98 10.98 37.52 6.09
7370 8956 1.131638 ACTGCCAAGAGGTTCACTGA 58.868 50.000 0.00 0.00 37.19 3.41
7408 8994 1.599047 CGGTCATGGCCTGTCTCTT 59.401 57.895 15.80 0.00 0.00 2.85
7460 9047 0.588252 GCAGCGATGTGGCGATTTAT 59.412 50.000 1.22 0.00 38.18 1.40
7461 9048 1.798223 GCAGCGATGTGGCGATTTATA 59.202 47.619 1.22 0.00 38.18 0.98
7462 9049 2.416547 GCAGCGATGTGGCGATTTATAT 59.583 45.455 1.22 0.00 38.18 0.86
7503 9090 4.826274 ACAGGCTTTCAGCTATCTGTTA 57.174 40.909 0.00 0.00 37.78 2.41
7519 9106 3.191162 TCTGTTAACTGCATCACAATGGC 59.809 43.478 7.22 0.00 33.19 4.40
7548 9135 4.205587 GCAGGATTTCACATCTCCTCATT 58.794 43.478 0.00 0.00 37.30 2.57
7555 9142 8.186821 GGATTTCACATCTCCTCATTAAACTTG 58.813 37.037 0.00 0.00 0.00 3.16
7591 10852 2.579207 TACGCTCTGCATAAGTGACC 57.421 50.000 14.66 0.00 0.00 4.02
7613 10874 3.322211 TCTTCGGCGGACTTGAAAATA 57.678 42.857 7.21 0.00 0.00 1.40
7614 10875 3.869065 TCTTCGGCGGACTTGAAAATAT 58.131 40.909 7.21 0.00 0.00 1.28
7615 10876 4.258543 TCTTCGGCGGACTTGAAAATATT 58.741 39.130 7.21 0.00 0.00 1.28
7684 10945 6.791303 TGTCACTTAAAACTTGCGAAAATCT 58.209 32.000 0.00 0.00 0.00 2.40
7689 10950 8.209869 CACTTAAAACTTGCGAAAATCTCAATG 58.790 33.333 0.00 0.00 0.00 2.82
7692 10953 2.179589 CTTGCGAAAATCTCAATGCCG 58.820 47.619 0.00 0.00 0.00 5.69
7695 10956 2.227626 TGCGAAAATCTCAATGCCGAAA 59.772 40.909 0.00 0.00 0.00 3.46
7741 11002 7.620880 ACTTAGCTATGGTTATTTGTCAGTCA 58.379 34.615 11.03 0.00 0.00 3.41
7815 11076 6.095432 ACTGATCTATTGCAGGATCTGTAC 57.905 41.667 23.41 0.00 43.83 2.90
7824 11085 3.134623 TGCAGGATCTGTACCATCGATTT 59.865 43.478 0.00 0.00 33.43 2.17
7833 11094 2.194201 ACCATCGATTTCCAAACCGT 57.806 45.000 0.00 0.00 0.00 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.268896 GCATGACTGGCATTTGGATCG 60.269 52.381 0.00 0.00 34.15 3.69
141 142 1.018226 GCAGAGACAGCGCATCAACT 61.018 55.000 11.47 7.78 0.00 3.16
241 254 1.507141 CCGCCAACACGAGCTTCTTT 61.507 55.000 0.00 0.00 34.06 2.52
264 277 2.259204 CGTCGGCGACAACCCTAA 59.741 61.111 35.62 0.00 41.33 2.69
314 330 0.747255 CCTCATCCACTACCACTCGG 59.253 60.000 0.00 0.00 38.77 4.63
421 445 4.382320 GGCGGCCGTCCAACTACA 62.382 66.667 28.70 0.00 0.00 2.74
446 470 2.633657 CTTGTTGTTCGCTGCGCT 59.366 55.556 18.65 0.00 0.00 5.92
447 471 2.427410 CCTTGTTGTTCGCTGCGC 60.427 61.111 18.65 0.00 0.00 6.09
451 475 1.222115 GCGTCTCCTTGTTGTTCGCT 61.222 55.000 0.00 0.00 39.26 4.93
455 479 1.597027 CCCGCGTCTCCTTGTTGTT 60.597 57.895 4.92 0.00 0.00 2.83
459 483 4.003788 CACCCCGCGTCTCCTTGT 62.004 66.667 4.92 0.00 0.00 3.16
491 537 6.126863 TCTGGTCTAATTGTGTCTGGAATT 57.873 37.500 0.00 0.00 0.00 2.17
507 553 0.179073 CGCCGATCCATTTCTGGTCT 60.179 55.000 0.00 0.00 43.61 3.85
508 554 1.776034 GCGCCGATCCATTTCTGGTC 61.776 60.000 0.00 0.00 43.61 4.02
509 555 1.819632 GCGCCGATCCATTTCTGGT 60.820 57.895 0.00 0.00 43.61 4.00
537 585 3.408634 ACCCAACTTAAATCGTGTCTGG 58.591 45.455 0.00 0.00 0.00 3.86
574 623 2.676342 GGATCGGTGCGAATAAAAGTGT 59.324 45.455 0.00 0.00 39.99 3.55
584 633 0.589223 GTTTGTTTGGATCGGTGCGA 59.411 50.000 0.00 0.00 41.13 5.10
588 637 1.572447 CGCGTTTGTTTGGATCGGT 59.428 52.632 0.00 0.00 0.00 4.69
619 669 1.135402 GCAACTTCAATCGGGCGATTT 60.135 47.619 0.00 0.00 42.30 2.17
621 671 0.392998 AGCAACTTCAATCGGGCGAT 60.393 50.000 0.00 0.00 36.23 4.58
628 678 7.915923 GGCCTTACTATTAAAGCAACTTCAATC 59.084 37.037 0.00 0.00 0.00 2.67
646 696 2.885894 GCGTCTAGTCTATGGCCTTACT 59.114 50.000 3.32 1.40 0.00 2.24
647 697 2.030096 GGCGTCTAGTCTATGGCCTTAC 60.030 54.545 3.32 0.00 37.57 2.34
648 698 2.236766 GGCGTCTAGTCTATGGCCTTA 58.763 52.381 3.32 0.02 37.57 2.69
649 699 1.041437 GGCGTCTAGTCTATGGCCTT 58.959 55.000 3.32 0.00 37.57 4.35
650 700 0.186386 AGGCGTCTAGTCTATGGCCT 59.814 55.000 3.32 10.97 45.53 5.19
651 701 1.041437 AAGGCGTCTAGTCTATGGCC 58.959 55.000 0.00 0.00 40.80 5.36
652 702 2.362717 AGAAAGGCGTCTAGTCTATGGC 59.637 50.000 1.46 0.00 32.25 4.40
653 703 4.098044 TGAAGAAAGGCGTCTAGTCTATGG 59.902 45.833 3.77 0.00 32.25 2.74
654 704 5.250235 TGAAGAAAGGCGTCTAGTCTATG 57.750 43.478 3.77 0.00 32.25 2.23
655 705 5.652518 GTTGAAGAAAGGCGTCTAGTCTAT 58.347 41.667 3.77 0.00 32.25 1.98
656 706 4.379186 CGTTGAAGAAAGGCGTCTAGTCTA 60.379 45.833 3.77 0.00 32.25 2.59
657 707 3.612004 CGTTGAAGAAAGGCGTCTAGTCT 60.612 47.826 0.00 0.00 35.45 3.24
658 708 2.662156 CGTTGAAGAAAGGCGTCTAGTC 59.338 50.000 0.00 0.00 0.00 2.59
659 709 2.609737 CCGTTGAAGAAAGGCGTCTAGT 60.610 50.000 0.00 0.00 0.00 2.57
660 710 1.993370 CCGTTGAAGAAAGGCGTCTAG 59.007 52.381 0.00 0.00 0.00 2.43
661 711 1.938016 GCCGTTGAAGAAAGGCGTCTA 60.938 52.381 0.00 0.00 45.17 2.59
662 712 1.228657 GCCGTTGAAGAAAGGCGTCT 61.229 55.000 0.00 0.00 45.17 4.18
671 721 2.347490 GAGCCCTGCCGTTGAAGA 59.653 61.111 0.00 0.00 0.00 2.87
724 774 0.623723 ATCCTTTTTGGCCCGAGCTA 59.376 50.000 0.00 0.00 39.73 3.32
745 795 8.236586 GCTTTCTTTTTCAGTTTCCACATTTTT 58.763 29.630 0.00 0.00 0.00 1.94
785 836 5.163884 GGCGGTATCTTTTCTTTGTAGTGAC 60.164 44.000 0.00 0.00 0.00 3.67
793 844 4.262617 GGAGAAGGCGGTATCTTTTCTTT 58.737 43.478 0.00 0.00 0.00 2.52
794 845 3.370633 GGGAGAAGGCGGTATCTTTTCTT 60.371 47.826 0.00 0.00 0.00 2.52
795 846 2.170817 GGGAGAAGGCGGTATCTTTTCT 59.829 50.000 0.00 0.00 0.00 2.52
796 847 2.562635 GGGAGAAGGCGGTATCTTTTC 58.437 52.381 0.00 0.00 0.00 2.29
797 848 1.212195 GGGGAGAAGGCGGTATCTTTT 59.788 52.381 0.00 0.00 0.00 2.27
821 872 0.939419 AGGTTTCCGTTTCCGTTTCG 59.061 50.000 0.00 0.00 0.00 3.46
867 926 2.617532 CCTCTCTTTTGGCTCTTGGGAG 60.618 54.545 0.00 0.00 42.18 4.30
868 927 1.352352 CCTCTCTTTTGGCTCTTGGGA 59.648 52.381 0.00 0.00 0.00 4.37
869 928 1.831580 CCTCTCTTTTGGCTCTTGGG 58.168 55.000 0.00 0.00 0.00 4.12
874 933 0.247736 TCTCGCCTCTCTTTTGGCTC 59.752 55.000 0.00 0.00 46.42 4.70
877 936 1.404851 GGTCTCTCGCCTCTCTTTTGG 60.405 57.143 0.00 0.00 0.00 3.28
878 937 1.548269 AGGTCTCTCGCCTCTCTTTTG 59.452 52.381 0.00 0.00 0.00 2.44
879 938 1.548269 CAGGTCTCTCGCCTCTCTTTT 59.452 52.381 0.00 0.00 33.31 2.27
880 939 1.181786 CAGGTCTCTCGCCTCTCTTT 58.818 55.000 0.00 0.00 33.31 2.52
881 940 0.682855 CCAGGTCTCTCGCCTCTCTT 60.683 60.000 0.00 0.00 33.31 2.85
1173 1260 2.679996 GGGCAGCGGGGAAACAAT 60.680 61.111 0.00 0.00 0.00 2.71
1177 1264 1.535202 AAATTGGGCAGCGGGGAAA 60.535 52.632 0.00 0.00 0.00 3.13
1189 1276 1.384222 GCTACCGGCTCCCAAATTGG 61.384 60.000 4.74 4.74 38.06 3.16
1247 1388 5.047590 ACCCGAAACATACCAGAAAAATTCC 60.048 40.000 0.00 0.00 0.00 3.01
1254 1395 3.443052 TCCTACCCGAAACATACCAGAA 58.557 45.455 0.00 0.00 0.00 3.02
1255 1396 3.104519 TCCTACCCGAAACATACCAGA 57.895 47.619 0.00 0.00 0.00 3.86
1256 1397 3.793559 CTTCCTACCCGAAACATACCAG 58.206 50.000 0.00 0.00 0.00 4.00
1259 1400 2.558378 GGCTTCCTACCCGAAACATAC 58.442 52.381 0.00 0.00 0.00 2.39
1260 1401 2.994186 GGCTTCCTACCCGAAACATA 57.006 50.000 0.00 0.00 0.00 2.29
1261 1402 3.875865 GGCTTCCTACCCGAAACAT 57.124 52.632 0.00 0.00 0.00 2.71
1302 1446 2.202987 GACAGCCGCATCCTCCAG 60.203 66.667 0.00 0.00 0.00 3.86
1305 1449 2.107953 GGAGACAGCCGCATCCTC 59.892 66.667 0.00 0.00 0.00 3.71
1306 1450 3.842923 CGGAGACAGCCGCATCCT 61.843 66.667 0.00 0.00 45.38 3.24
1425 1570 2.437897 CCCAAACCAGGCAGCTCT 59.562 61.111 0.00 0.00 0.00 4.09
1483 1648 3.502979 GCCACGGGTTAACTAAATTGTGA 59.497 43.478 5.42 0.00 0.00 3.58
1500 1665 1.402968 CAGAATTTCCTCATGGCCACG 59.597 52.381 8.16 0.00 0.00 4.94
1503 1668 1.063717 TCCCAGAATTTCCTCATGGCC 60.064 52.381 0.00 0.00 0.00 5.36
1506 1671 2.950309 CAGCTCCCAGAATTTCCTCATG 59.050 50.000 0.00 0.00 0.00 3.07
1518 1683 2.541588 CGAACAACAAAACAGCTCCCAG 60.542 50.000 0.00 0.00 0.00 4.45
1523 1688 1.742831 TGCTCGAACAACAAAACAGCT 59.257 42.857 0.00 0.00 0.00 4.24
1551 1716 6.018994 CAGTAGAGAATTTATTCGAAACCCCG 60.019 42.308 0.00 0.00 41.56 5.73
1564 1729 6.812160 CAGGTACGCTAAACAGTAGAGAATTT 59.188 38.462 0.00 0.00 0.00 1.82
1636 1801 1.217511 CAGCAGCTCTGACACGGAT 59.782 57.895 7.22 0.00 45.72 4.18
1637 1802 1.748329 AACAGCAGCTCTGACACGGA 61.748 55.000 16.81 0.00 45.72 4.69
1662 1827 6.920210 TCTCGCAGTATATCTTCAAACATCAG 59.080 38.462 0.00 0.00 0.00 2.90
1713 1878 2.484264 GCTCATCACAAAGCGGTTTACT 59.516 45.455 12.94 0.00 0.00 2.24
1787 1974 2.089980 CTCTTCAGCATCCCAAAGTGG 58.910 52.381 0.00 0.00 37.25 4.00
1839 2028 6.071051 GCCACAAAAGGGATGGTAATAAGAAA 60.071 38.462 0.00 0.00 35.79 2.52
1851 2040 2.365293 GTGAACAAGCCACAAAAGGGAT 59.635 45.455 0.00 0.00 34.81 3.85
1855 2044 2.223537 GGGTGAACAAGCCACAAAAG 57.776 50.000 0.00 0.00 46.46 2.27
1864 2053 2.361757 TGTGCAATCAAGGGTGAACAAG 59.638 45.455 0.00 0.00 37.30 3.16
1881 2070 1.889545 GGATAGGCAGATCCTTGTGC 58.110 55.000 10.37 0.00 44.75 4.57
1887 2076 2.936202 TGCAAAAGGATAGGCAGATCC 58.064 47.619 9.78 9.78 45.16 3.36
1901 2090 8.695284 GTGATGTAATACGAAACATTTGCAAAA 58.305 29.630 17.19 0.00 36.48 2.44
1928 2117 6.513180 TGTAACAGTGTTCAAACCAAAAACA 58.487 32.000 12.82 4.33 0.00 2.83
1929 2118 7.589574 ATGTAACAGTGTTCAAACCAAAAAC 57.410 32.000 12.82 1.53 0.00 2.43
1993 2182 6.243148 TCTGACAAATAAGACCCCTAAAACC 58.757 40.000 0.00 0.00 0.00 3.27
2093 2283 6.200286 GTCAATCTAGTGAAGAAAACACGTCA 59.800 38.462 0.00 0.00 42.25 4.35
2118 2308 6.145696 ACGGTCAAGATTTAGAAAAGAAGTCG 59.854 38.462 0.00 0.00 0.00 4.18
2419 2609 7.274250 GCATGAGAAAACAAGTTAATGATCACC 59.726 37.037 0.00 0.00 0.00 4.02
2451 2641 7.934120 ACCTCACAGATAAATATTAAGGCTGAC 59.066 37.037 11.93 0.00 0.00 3.51
2563 2753 0.343372 TAGCATTGGACTCCCCTCCT 59.657 55.000 0.00 0.00 35.38 3.69
2646 2836 6.966435 TTTACTCGTTAAATTAAGACCCCG 57.034 37.500 0.00 0.00 0.00 5.73
2680 2870 0.036164 CACTTCCCCGAATGTGGTCA 59.964 55.000 0.00 0.00 0.00 4.02
2795 2985 1.099879 GCCACATCAGCCTGGACATC 61.100 60.000 0.00 0.00 0.00 3.06
2802 2992 0.957395 CAGAAACGCCACATCAGCCT 60.957 55.000 0.00 0.00 0.00 4.58
3324 4204 2.512692 AGCCAGCAACCAATGACATA 57.487 45.000 0.00 0.00 0.00 2.29
3487 4367 6.825213 TCTTGCACAGTAAGAGCATATTTCAT 59.175 34.615 0.00 0.00 43.38 2.57
3823 4710 8.490355 GTTCTGAAACATGGATTTGAACATTTC 58.510 33.333 17.68 8.61 35.36 2.17
3910 4797 4.713814 ACTTAAGTGCAGATGATCCTCTGA 59.286 41.667 26.54 12.25 44.48 3.27
4067 4954 3.445805 TCCAAGGAAACAAACAGTTCCAC 59.554 43.478 5.31 0.00 40.26 4.02
4102 4989 5.629435 GCACCATAAGTTTGCAACTAAGTTC 59.371 40.000 0.00 0.00 41.91 3.01
4365 5252 1.962807 CTGGGCTTCATGACAAAACCA 59.037 47.619 0.00 0.00 0.00 3.67
4470 5361 7.315142 CACTTTGCCATGTATAACTGAACAAT 58.685 34.615 0.00 0.00 0.00 2.71
4485 5376 1.273327 GCAGCTTTACCACTTTGCCAT 59.727 47.619 0.00 0.00 0.00 4.40
4486 5377 0.673437 GCAGCTTTACCACTTTGCCA 59.327 50.000 0.00 0.00 0.00 4.92
4487 5378 0.961753 AGCAGCTTTACCACTTTGCC 59.038 50.000 0.00 0.00 32.21 4.52
4488 5379 1.932156 GCAGCAGCTTTACCACTTTGC 60.932 52.381 0.00 0.00 37.91 3.68
4489 5380 1.336240 GGCAGCAGCTTTACCACTTTG 60.336 52.381 0.00 0.00 41.70 2.77
4490 5381 0.961753 GGCAGCAGCTTTACCACTTT 59.038 50.000 0.00 0.00 41.70 2.66
4491 5382 0.111253 AGGCAGCAGCTTTACCACTT 59.889 50.000 0.00 0.00 41.70 3.16
4492 5383 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
4493 5384 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
4494 5385 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
4495 5386 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
4496 5387 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
4497 5388 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
4501 5392 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
4502 5393 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
4503 5394 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
4505 5396 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
4506 5397 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
4518 5409 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
4520 5411 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
4521 5412 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
4522 5413 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
4524 5415 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
4525 5416 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
4526 5417 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
4530 5421 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
4531 5422 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
4533 5424 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
4538 5429 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
4539 5430 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
4551 5442 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
4552 5443 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
4554 5445 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
4557 5448 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
4558 5449 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
4560 5451 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
4561 5452 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
4563 5454 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
4564 5455 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
4565 5456 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
4567 5458 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
4568 5459 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
4569 5460 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
4570 5461 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
4574 5465 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
4575 5466 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
4577 5468 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
4587 5478 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
4588 5479 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
4589 5480 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
4590 5481 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
4591 5482 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
4592 5483 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
4593 5484 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
4594 5485 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
4595 5486 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
4596 5487 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
4597 5488 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
4598 5489 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
4599 5490 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
4600 5491 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
4601 5492 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
4602 5493 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
4603 5494 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
4604 5495 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
4605 5496 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
4617 5508 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
4620 5511 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
4621 5512 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
4622 5513 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
4623 5514 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
4629 5520 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
4630 5521 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
4631 5522 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
4632 5523 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
4633 5524 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
4649 5540 7.718272 CAAAATGATTTGCCATGTATAAGGG 57.282 36.000 0.00 0.00 39.50 3.95
4757 5648 6.115446 TGCTCCTAGGTGTTCTCATTTAATG 58.885 40.000 9.08 0.00 0.00 1.90
4807 5698 5.649831 ACTTCAGAATTGGGTGCTATTTCTC 59.350 40.000 0.00 0.00 0.00 2.87
4842 5735 1.286248 ATACACCCCCAACTCAGGTC 58.714 55.000 0.00 0.00 0.00 3.85
5506 6609 6.118852 ACTCGCAGCTGAGATCATCTATATA 58.881 40.000 20.90 0.00 39.35 0.86
5507 6610 4.949238 ACTCGCAGCTGAGATCATCTATAT 59.051 41.667 20.90 0.00 39.35 0.86
5538 6641 9.900710 AAGAGTACAACATCTAATACGATCATC 57.099 33.333 0.00 0.00 0.00 2.92
5705 6808 5.221422 CCATAGCCAGTTCTTTGGTGAAAAA 60.221 40.000 0.00 0.00 40.49 1.94
5722 6825 1.999634 ATGCACCCCTGTCCATAGCC 62.000 60.000 0.00 0.00 0.00 3.93
5802 6905 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
5850 6953 9.685828 GAAACAAGCCTACAATAACAATAACAA 57.314 29.630 0.00 0.00 0.00 2.83
5851 6954 9.073475 AGAAACAAGCCTACAATAACAATAACA 57.927 29.630 0.00 0.00 0.00 2.41
5852 6955 9.908152 AAGAAACAAGCCTACAATAACAATAAC 57.092 29.630 0.00 0.00 0.00 1.89
5854 6957 9.290988 TGAAGAAACAAGCCTACAATAACAATA 57.709 29.630 0.00 0.00 0.00 1.90
5855 6958 8.177119 TGAAGAAACAAGCCTACAATAACAAT 57.823 30.769 0.00 0.00 0.00 2.71
5856 6959 7.575414 TGAAGAAACAAGCCTACAATAACAA 57.425 32.000 0.00 0.00 0.00 2.83
5857 6960 7.759489 ATGAAGAAACAAGCCTACAATAACA 57.241 32.000 0.00 0.00 0.00 2.41
5858 6961 9.774742 CTTATGAAGAAACAAGCCTACAATAAC 57.225 33.333 0.00 0.00 0.00 1.89
5859 6962 9.733556 TCTTATGAAGAAACAAGCCTACAATAA 57.266 29.630 0.00 0.00 33.83 1.40
5860 6963 9.383519 CTCTTATGAAGAAACAAGCCTACAATA 57.616 33.333 0.00 0.00 37.02 1.90
5861 6964 8.103305 TCTCTTATGAAGAAACAAGCCTACAAT 58.897 33.333 0.00 0.00 37.02 2.71
6103 7234 5.221884 TGGATGGGAAAACAGCAAATTTCAT 60.222 36.000 9.39 0.00 37.29 2.57
6105 7236 4.452114 GTGGATGGGAAAACAGCAAATTTC 59.548 41.667 0.00 0.00 35.33 2.17
6113 7244 4.039004 TGAAACATGTGGATGGGAAAACAG 59.961 41.667 0.00 0.00 33.39 3.16
6121 7252 8.951787 ATTTATTTCATGAAACATGTGGATGG 57.048 30.769 22.71 0.00 33.39 3.51
6128 7259 9.256477 CAGATGGGATTTATTTCATGAAACATG 57.744 33.333 22.71 7.30 32.51 3.21
6130 7261 8.592529 TCAGATGGGATTTATTTCATGAAACA 57.407 30.769 22.71 9.28 32.51 2.83
6146 7277 4.204799 CAGCTTGATTTCATCAGATGGGA 58.795 43.478 10.67 0.11 40.94 4.37
6187 7320 7.795047 TGTCTCACAACCATAATAGTGATCAT 58.205 34.615 0.00 0.00 39.92 2.45
6197 7330 2.746904 CGGCATTGTCTCACAACCATAA 59.253 45.455 0.00 0.00 41.40 1.90
6528 7947 2.738964 GCCGAGAAGGACTATGGACAAC 60.739 54.545 0.00 0.00 45.00 3.32
6709 8128 4.705991 TGCTTAATCATGGATTTGACTGCA 59.294 37.500 0.00 0.00 33.95 4.41
6755 8174 0.677731 TGTAACAGCATGCCTGGCTC 60.678 55.000 21.03 9.01 46.14 4.70
6827 8410 3.309556 CCTTGGCCCCTATCCTGTAAAAA 60.310 47.826 0.00 0.00 0.00 1.94
6893 8476 1.067060 CTGATGACGAGAATGCGGGTA 59.933 52.381 0.00 0.00 35.12 3.69
7071 8655 3.054875 AGCTCAAGGAATGCACTATCACA 60.055 43.478 0.00 0.00 0.00 3.58
7178 8762 1.927174 GCAGTCAAGCGTACGATGATT 59.073 47.619 21.65 15.59 0.00 2.57
7227 8811 6.167685 ACAGATACTACAAATGTAACCGCAA 58.832 36.000 0.00 0.00 0.00 4.85
7235 8819 8.807948 ATGGCTTAAACAGATACTACAAATGT 57.192 30.769 0.00 0.00 0.00 2.71
7297 8883 0.037303 AGTCTTCCACGGTACCGAGA 59.963 55.000 39.52 29.77 42.83 4.04
7351 8937 1.131638 TCAGTGAACCTCTTGGCAGT 58.868 50.000 0.00 0.00 36.63 4.40
7408 8994 1.833630 CCTCCTGACACATTAGCCTGA 59.166 52.381 0.00 0.00 0.00 3.86
7503 9090 1.885157 CCGCCATTGTGATGCAGTT 59.115 52.632 0.00 0.00 31.67 3.16
7519 9106 0.527113 TGTGAAATCCTGCATTGCCG 59.473 50.000 6.12 0.00 0.00 5.69
7591 10852 1.438651 TTTCAAGTCCGCCGAAGATG 58.561 50.000 0.00 0.00 0.00 2.90
7684 10945 3.003394 ACCATCTGATTTCGGCATTGA 57.997 42.857 0.00 0.00 0.00 2.57
7689 10950 8.134895 TGAATATAAAAACCATCTGATTTCGGC 58.865 33.333 0.00 0.00 0.00 5.54
7726 10987 8.788325 ATTACTTAGGTGACTGACAAATAACC 57.212 34.615 0.00 0.00 43.88 2.85
7741 11002 9.636789 AAACACAGGTTTCTTTATTACTTAGGT 57.363 29.630 0.00 0.00 43.60 3.08
7793 11054 5.011431 TGGTACAGATCCTGCAATAGATCAG 59.989 44.000 18.26 14.23 41.16 2.90
7815 11076 1.467374 GCACGGTTTGGAAATCGATGG 60.467 52.381 11.57 2.49 44.89 3.51
7824 11085 1.301423 GTGTTACAGCACGGTTTGGA 58.699 50.000 0.00 0.00 0.00 3.53
7833 11094 0.871722 GGCATTGACGTGTTACAGCA 59.128 50.000 0.00 0.00 0.00 4.41
7844 11105 0.179156 CAATCCGCACTGGCATTGAC 60.179 55.000 9.24 0.00 41.24 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.