Multiple sequence alignment - TraesCS3A01G454300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G454300 chr3A 100.000 3110 0 0 1 3110 692608298 692605189 0.000000e+00 5744.0
1 TraesCS3A01G454300 chr3A 93.333 45 1 1 2377 2421 692526935 692526893 7.200000e-07 65.8
2 TraesCS3A01G454300 chr3A 100.000 29 0 0 2817 2845 348998717 348998689 2.000000e-03 54.7
3 TraesCS3A01G454300 chr3D 89.690 2745 162 41 128 2810 555455648 555452963 0.000000e+00 3389.0
4 TraesCS3A01G454300 chr3B 90.909 1837 110 19 991 2804 738685658 738683856 0.000000e+00 2414.0
5 TraesCS3A01G454300 chr3B 79.433 564 71 30 379 915 738686498 738685953 1.060000e-94 357.0
6 TraesCS3A01G454300 chr3B 86.875 320 22 7 41 349 738686798 738686488 1.070000e-89 340.0
7 TraesCS3A01G454300 chr3B 82.222 180 19 5 2247 2424 738680794 738680626 3.230000e-30 143.0
8 TraesCS3A01G454300 chr2A 77.049 305 56 8 1000 1291 65814062 65813759 2.480000e-36 163.0
9 TraesCS3A01G454300 chr2A 89.899 99 9 1 2935 3032 733493019 733492921 3.260000e-25 126.0
10 TraesCS3A01G454300 chr2A 89.362 94 10 0 2935 3028 769479712 769479619 5.450000e-23 119.0
11 TraesCS3A01G454300 chr2D 77.817 284 47 11 1015 1284 68905018 68904737 8.930000e-36 161.0
12 TraesCS3A01G454300 chr7B 97.802 91 2 0 2935 3025 450581975 450582065 1.150000e-34 158.0
13 TraesCS3A01G454300 chr7B 93.939 99 5 1 2815 2913 450579698 450579795 6.950000e-32 148.0
14 TraesCS3A01G454300 chr2B 76.923 299 53 11 1000 1284 101453692 101453988 4.150000e-34 156.0
15 TraesCS3A01G454300 chr2B 100.000 29 0 0 2817 2845 752460171 752460199 2.000000e-03 54.7
16 TraesCS3A01G454300 chr2B 100.000 28 0 0 2817 2844 632609765 632609792 6.000000e-03 52.8
17 TraesCS3A01G454300 chr5A 88.889 126 13 1 2812 2936 631061410 631061535 1.490000e-33 154.0
18 TraesCS3A01G454300 chr5A 89.831 118 11 1 2820 2936 502800698 502800581 1.930000e-32 150.0
19 TraesCS3A01G454300 chr5A 91.209 91 8 0 2935 3025 631061570 631061660 1.170000e-24 124.0
20 TraesCS3A01G454300 chr5A 90.110 91 9 0 2935 3025 502800546 502800456 5.450000e-23 119.0
21 TraesCS3A01G454300 chr4B 87.879 132 15 1 2806 2936 57256697 57256566 1.490000e-33 154.0
22 TraesCS3A01G454300 chr4B 91.000 100 9 0 2935 3034 57256531 57256432 5.410000e-28 135.0
23 TraesCS3A01G454300 chr7A 88.430 121 13 1 2817 2936 664892475 664892595 8.990000e-31 145.0
24 TraesCS3A01G454300 chr7A 89.691 97 9 1 2935 3030 664892630 664892726 4.210000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G454300 chr3A 692605189 692608298 3109 True 5744.0 5744 100.00000 1 3110 1 chr3A.!!$R3 3109
1 TraesCS3A01G454300 chr3D 555452963 555455648 2685 True 3389.0 3389 89.69000 128 2810 1 chr3D.!!$R1 2682
2 TraesCS3A01G454300 chr3B 738680626 738686798 6172 True 813.5 2414 84.85975 41 2804 4 chr3B.!!$R1 2763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 632 0.025001 CGATGATTCGTGACGCAACC 59.975 55.0 0.0 0.0 40.53 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2556 2869 1.073444 GAACCGGAAGTTTCTTCCCCT 59.927 52.381 9.46 7.03 39.4 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.186155 TACGAGTGCCTGCGTATGT 58.814 52.632 0.00 0.00 41.49 2.29
23 24 1.381522 TACGAGTGCCTGCGTATGTA 58.618 50.000 0.00 0.00 41.49 2.29
24 25 0.744874 ACGAGTGCCTGCGTATGTAT 59.255 50.000 0.00 0.00 39.21 2.29
25 26 1.951602 ACGAGTGCCTGCGTATGTATA 59.048 47.619 0.00 0.00 39.21 1.47
26 27 2.031069 ACGAGTGCCTGCGTATGTATAG 60.031 50.000 0.00 0.00 39.21 1.31
27 28 2.031069 CGAGTGCCTGCGTATGTATAGT 60.031 50.000 0.00 0.00 0.00 2.12
28 29 3.309388 GAGTGCCTGCGTATGTATAGTG 58.691 50.000 0.00 0.00 0.00 2.74
29 30 2.693591 AGTGCCTGCGTATGTATAGTGT 59.306 45.455 0.00 0.00 0.00 3.55
30 31 3.132289 AGTGCCTGCGTATGTATAGTGTT 59.868 43.478 0.00 0.00 0.00 3.32
31 32 4.340097 AGTGCCTGCGTATGTATAGTGTTA 59.660 41.667 0.00 0.00 0.00 2.41
32 33 5.045215 GTGCCTGCGTATGTATAGTGTTAA 58.955 41.667 0.00 0.00 0.00 2.01
33 34 5.521010 GTGCCTGCGTATGTATAGTGTTAAA 59.479 40.000 0.00 0.00 0.00 1.52
34 35 6.036300 GTGCCTGCGTATGTATAGTGTTAAAA 59.964 38.462 0.00 0.00 0.00 1.52
35 36 6.594547 TGCCTGCGTATGTATAGTGTTAAAAA 59.405 34.615 0.00 0.00 0.00 1.94
60 61 9.973246 AAAATAAAATCATATCATAGCGCGTAG 57.027 29.630 8.43 0.00 0.00 3.51
71 72 0.179100 AGCGCGTAGGACGTCTACTA 60.179 55.000 16.46 6.48 44.66 1.82
72 73 0.231790 GCGCGTAGGACGTCTACTAG 59.768 60.000 16.46 12.03 44.66 2.57
73 74 1.565305 CGCGTAGGACGTCTACTAGT 58.435 55.000 16.46 0.00 44.66 2.57
74 75 2.732366 CGCGTAGGACGTCTACTAGTA 58.268 52.381 16.46 1.89 44.66 1.82
75 76 2.469516 CGCGTAGGACGTCTACTAGTAC 59.530 54.545 16.46 7.01 44.66 2.73
76 77 3.712187 GCGTAGGACGTCTACTAGTACT 58.288 50.000 16.46 0.00 44.66 2.73
77 78 4.116238 GCGTAGGACGTCTACTAGTACTT 58.884 47.826 16.46 0.00 44.66 2.24
91 92 2.157738 AGTACTTTACTCGAGCGGTGT 58.842 47.619 13.61 9.46 32.47 4.16
112 113 3.807538 GCGAGCCACACCATGCAG 61.808 66.667 0.00 0.00 0.00 4.41
113 114 3.129502 CGAGCCACACCATGCAGG 61.130 66.667 0.00 0.00 45.67 4.85
177 178 1.429463 CTTCCTTCCGTGTGCAGTAC 58.571 55.000 0.00 0.00 0.00 2.73
182 183 2.751259 CCTTCCGTGTGCAGTACTACTA 59.249 50.000 0.00 0.00 0.00 1.82
185 186 2.745821 TCCGTGTGCAGTACTACTACAG 59.254 50.000 0.00 0.00 0.00 2.74
247 248 2.820479 CCCGCGTCGAGAGAGAGT 60.820 66.667 4.92 0.00 43.49 3.24
253 254 0.098025 CGTCGAGAGAGAGTGCTTCC 59.902 60.000 0.00 0.00 43.49 3.46
263 264 1.905894 AGAGTGCTTCCCTTTCTCTCC 59.094 52.381 0.00 0.00 30.98 3.71
288 299 0.384725 CGCGCACTCACTTTTCCTTG 60.385 55.000 8.75 0.00 0.00 3.61
472 501 2.110213 GCACACCCAAGGACGTCA 59.890 61.111 18.91 0.00 0.00 4.35
474 503 1.577328 GCACACCCAAGGACGTCATG 61.577 60.000 18.91 15.09 0.00 3.07
519 565 1.289109 CCACCGCACTAACCTGAACG 61.289 60.000 0.00 0.00 0.00 3.95
586 632 0.025001 CGATGATTCGTGACGCAACC 59.975 55.000 0.00 0.00 40.53 3.77
625 684 2.125673 GATGACACGTGGGACCCG 60.126 66.667 21.57 0.00 0.00 5.28
661 720 2.458610 CGCGTCATGCATGCTGAGT 61.459 57.895 22.25 0.00 46.97 3.41
664 723 1.712018 CGTCATGCATGCTGAGTGGG 61.712 60.000 22.25 6.24 0.00 4.61
668 727 2.827642 GCATGCTGAGTGGGGAGC 60.828 66.667 11.37 0.00 35.65 4.70
735 797 1.342174 TCACGAAGGACCTACCACAAC 59.658 52.381 0.00 0.00 42.04 3.32
753 815 3.330701 ACAACCCATACTCATTCCACTGT 59.669 43.478 0.00 0.00 0.00 3.55
770 832 3.387091 TCATGACGGACCCACGGG 61.387 66.667 0.00 0.00 42.03 5.28
809 871 3.594453 CCTTAAGGGCCAAGCATGA 57.406 52.632 14.25 0.00 0.00 3.07
894 956 1.153349 GCTCTCCCAACGATCCCAC 60.153 63.158 0.00 0.00 0.00 4.61
899 961 2.435938 CCAACGATCCCACCACCG 60.436 66.667 0.00 0.00 0.00 4.94
932 994 1.420514 CATCCATCCACAGCCAGATCT 59.579 52.381 0.00 0.00 0.00 2.75
944 1197 0.105555 CCAGATCTGCTCTCCCCTCT 60.106 60.000 17.76 0.00 29.16 3.69
988 1278 1.511305 GACACCGAGATCGCCAAGA 59.489 57.895 0.00 0.00 38.18 3.02
989 1279 0.802607 GACACCGAGATCGCCAAGAC 60.803 60.000 0.00 0.00 38.18 3.01
992 1282 2.490217 CGAGATCGCCAAGACCGT 59.510 61.111 0.00 0.00 0.00 4.83
995 1285 1.989966 GAGATCGCCAAGACCGTCGA 61.990 60.000 0.00 0.00 35.34 4.20
1086 1376 2.890474 GCCATGGAGGTGTACGCG 60.890 66.667 18.40 3.53 40.61 6.01
1389 1679 2.108970 GGGGTCCTCAACTTCTCGTAT 58.891 52.381 0.00 0.00 0.00 3.06
1398 1688 2.778187 ACTTCTCGTATAAGCTCGGC 57.222 50.000 0.00 0.00 0.00 5.54
1545 1835 3.224324 GCTCCGTCCGCCTATCCA 61.224 66.667 0.00 0.00 0.00 3.41
1551 1841 4.853142 TCCGCCTATCCACCGCCT 62.853 66.667 0.00 0.00 0.00 5.52
1908 2198 2.495409 CGGCTACGGCTATCCACCA 61.495 63.158 0.00 0.00 38.73 4.17
2126 2417 2.955402 GATCGTCGGGGAGGATCG 59.045 66.667 11.20 0.00 41.70 3.69
2130 2421 2.920645 CGTCGGGGAGGATCGGATG 61.921 68.421 0.00 0.00 34.37 3.51
2168 2459 7.658575 AGTTCTTTTGTACGCTCTTGGTATTTA 59.341 33.333 0.00 0.00 0.00 1.40
2195 2487 6.202954 TCAGTTCTTTCGTCTTCAGATTTTCC 59.797 38.462 0.00 0.00 0.00 3.13
2295 2588 8.669243 GTTCTGTAAATTTCTGTCTCTATTGGG 58.331 37.037 0.00 0.00 0.00 4.12
2304 2597 2.034685 TGTCTCTATTGGGCTCGAATCG 59.965 50.000 0.00 0.00 0.00 3.34
2312 2605 1.344438 TGGGCTCGAATCGCTGATAAT 59.656 47.619 0.00 0.00 0.00 1.28
2321 2614 1.013596 TCGCTGATAATTTGGCCGTG 58.986 50.000 0.00 0.00 0.00 4.94
2343 2636 5.750067 GTGTTGTCTTTGTGCTCATTCATTT 59.250 36.000 0.00 0.00 0.00 2.32
2347 2640 7.451501 TGTCTTTGTGCTCATTCATTTGATA 57.548 32.000 0.00 0.00 0.00 2.15
2377 2677 3.690139 TCAAACTTTGCGTGTTGGAACTA 59.310 39.130 0.00 0.00 0.00 2.24
2378 2678 3.963383 AACTTTGCGTGTTGGAACTAG 57.037 42.857 0.00 0.00 0.00 2.57
2379 2679 2.914059 ACTTTGCGTGTTGGAACTAGT 58.086 42.857 0.00 0.00 0.00 2.57
2380 2680 4.062677 ACTTTGCGTGTTGGAACTAGTA 57.937 40.909 0.00 0.00 0.00 1.82
2381 2681 4.056050 ACTTTGCGTGTTGGAACTAGTAG 58.944 43.478 0.00 0.00 0.00 2.57
2382 2682 3.738830 TTGCGTGTTGGAACTAGTAGT 57.261 42.857 0.00 0.00 0.00 2.73
2383 2683 3.021269 TGCGTGTTGGAACTAGTAGTG 57.979 47.619 2.90 0.00 0.00 2.74
2386 2686 3.612860 GCGTGTTGGAACTAGTAGTGATG 59.387 47.826 2.90 0.00 0.00 3.07
2391 2691 7.574404 CGTGTTGGAACTAGTAGTGATGTTCTA 60.574 40.741 2.90 0.00 38.86 2.10
2490 2799 7.759886 TGTGTTCTTATTGACTCCTTTATCGAG 59.240 37.037 0.00 0.00 0.00 4.04
2530 2841 3.578688 GCATCTTGCGTGGAAATTTCTT 58.421 40.909 17.42 0.00 31.71 2.52
2556 2869 2.908351 GGGTTAGTGGAAGAGTGGGTTA 59.092 50.000 0.00 0.00 0.00 2.85
2557 2870 3.055312 GGGTTAGTGGAAGAGTGGGTTAG 60.055 52.174 0.00 0.00 0.00 2.34
2559 2872 1.657804 AGTGGAAGAGTGGGTTAGGG 58.342 55.000 0.00 0.00 0.00 3.53
2560 2873 0.618981 GTGGAAGAGTGGGTTAGGGG 59.381 60.000 0.00 0.00 0.00 4.79
2581 2902 3.313249 GGAAGAAACTTCCGGTTCGAAAA 59.687 43.478 13.56 0.00 37.12 2.29
2582 2903 4.524749 GAAGAAACTTCCGGTTCGAAAAG 58.475 43.478 0.00 2.26 37.12 2.27
2600 2921 2.426023 GTCGTGGAGGGCAGTGTT 59.574 61.111 0.00 0.00 0.00 3.32
2602 2923 2.137528 TCGTGGAGGGCAGTGTTGA 61.138 57.895 0.00 0.00 0.00 3.18
2634 2956 1.823470 TATGGTGCGCCTTCCATGC 60.823 57.895 27.35 2.59 43.28 4.06
2635 2957 2.269520 TATGGTGCGCCTTCCATGCT 62.270 55.000 27.35 13.20 43.28 3.79
2672 2994 0.940519 CCAACTGCCAACATTGTGCG 60.941 55.000 0.00 0.00 0.00 5.34
2673 2995 0.940519 CAACTGCCAACATTGTGCGG 60.941 55.000 6.44 6.44 37.03 5.69
2674 2996 2.086251 AACTGCCAACATTGTGCGGG 62.086 55.000 11.38 5.71 36.03 6.13
2675 2997 2.520500 TGCCAACATTGTGCGGGT 60.521 55.556 7.44 0.00 0.00 5.28
2676 2998 2.049248 GCCAACATTGTGCGGGTG 60.049 61.111 7.44 0.00 0.00 4.61
2677 2999 2.049248 CCAACATTGTGCGGGTGC 60.049 61.111 0.00 0.00 43.20 5.01
2708 3030 2.611473 CGTGCAGACCAGAACTGATCTT 60.611 50.000 3.19 0.00 35.73 2.40
2793 3115 2.092429 TCAACTGCTGTCCCTGTTCTTT 60.092 45.455 0.00 0.00 0.00 2.52
2804 3126 4.037446 GTCCCTGTTCTTTGCAACAATGTA 59.963 41.667 0.00 0.00 35.83 2.29
2807 3129 5.990996 CCCTGTTCTTTGCAACAATGTAAAT 59.009 36.000 0.00 0.00 39.83 1.40
2810 3132 9.206870 CCTGTTCTTTGCAACAATGTAAATAAT 57.793 29.630 0.00 0.00 39.83 1.28
2819 3141 9.899661 TGCAACAATGTAAATAATAGGAGTACT 57.100 29.630 0.00 0.00 0.00 2.73
2830 3152 2.502633 GGAGTACTCCCTCCGTTCC 58.497 63.158 28.87 3.41 43.94 3.62
2831 3153 0.033306 GGAGTACTCCCTCCGTTCCT 60.033 60.000 28.87 0.00 43.94 3.36
2832 3154 1.391577 GAGTACTCCCTCCGTTCCTC 58.608 60.000 12.13 0.00 0.00 3.71
2833 3155 1.001282 AGTACTCCCTCCGTTCCTCT 58.999 55.000 0.00 0.00 0.00 3.69
2834 3156 2.172293 GAGTACTCCCTCCGTTCCTCTA 59.828 54.545 12.13 0.00 0.00 2.43
2835 3157 2.784682 AGTACTCCCTCCGTTCCTCTAT 59.215 50.000 0.00 0.00 0.00 1.98
2836 3158 3.979347 AGTACTCCCTCCGTTCCTCTATA 59.021 47.826 0.00 0.00 0.00 1.31
2837 3159 4.602732 AGTACTCCCTCCGTTCCTCTATAT 59.397 45.833 0.00 0.00 0.00 0.86
2838 3160 5.789575 AGTACTCCCTCCGTTCCTCTATATA 59.210 44.000 0.00 0.00 0.00 0.86
2839 3161 5.182169 ACTCCCTCCGTTCCTCTATATAG 57.818 47.826 3.10 3.10 0.00 1.31
2840 3162 4.602732 ACTCCCTCCGTTCCTCTATATAGT 59.397 45.833 9.58 0.00 0.00 2.12
2841 3163 4.919793 TCCCTCCGTTCCTCTATATAGTG 58.080 47.826 9.58 7.19 0.00 2.74
2842 3164 3.444388 CCCTCCGTTCCTCTATATAGTGC 59.556 52.174 9.58 0.00 0.00 4.40
2843 3165 3.127203 CCTCCGTTCCTCTATATAGTGCG 59.873 52.174 9.58 6.51 0.00 5.34
2844 3166 2.486982 TCCGTTCCTCTATATAGTGCGC 59.513 50.000 9.58 0.00 0.00 6.09
2845 3167 2.415625 CCGTTCCTCTATATAGTGCGCC 60.416 54.545 4.18 0.00 0.00 6.53
2846 3168 2.488545 CGTTCCTCTATATAGTGCGCCT 59.511 50.000 4.18 3.99 0.00 5.52
2847 3169 3.057456 CGTTCCTCTATATAGTGCGCCTT 60.057 47.826 4.18 0.00 0.00 4.35
2848 3170 4.238514 GTTCCTCTATATAGTGCGCCTTG 58.761 47.826 4.18 0.00 0.00 3.61
2849 3171 3.497332 TCCTCTATATAGTGCGCCTTGT 58.503 45.455 4.18 0.00 0.00 3.16
2850 3172 3.895656 TCCTCTATATAGTGCGCCTTGTT 59.104 43.478 4.18 0.00 0.00 2.83
2851 3173 4.344102 TCCTCTATATAGTGCGCCTTGTTT 59.656 41.667 4.18 0.00 0.00 2.83
2852 3174 5.537295 TCCTCTATATAGTGCGCCTTGTTTA 59.463 40.000 4.18 0.00 0.00 2.01
2853 3175 6.210784 TCCTCTATATAGTGCGCCTTGTTTAT 59.789 38.462 4.18 0.00 0.00 1.40
2854 3176 6.311445 CCTCTATATAGTGCGCCTTGTTTATG 59.689 42.308 4.18 0.00 0.00 1.90
2855 3177 6.163476 TCTATATAGTGCGCCTTGTTTATGG 58.837 40.000 4.18 0.00 0.00 2.74
2856 3178 1.091537 TAGTGCGCCTTGTTTATGGC 58.908 50.000 4.18 0.00 42.21 4.40
2865 3187 4.603985 GCCTTGTTTATGGCGTTTATACC 58.396 43.478 0.00 0.00 37.38 2.73
2866 3188 4.096682 GCCTTGTTTATGGCGTTTATACCA 59.903 41.667 0.00 0.00 41.06 3.25
2867 3189 5.393243 GCCTTGTTTATGGCGTTTATACCAA 60.393 40.000 0.00 0.00 39.96 3.67
2868 3190 6.031471 CCTTGTTTATGGCGTTTATACCAAC 58.969 40.000 0.00 0.00 39.96 3.77
2869 3191 6.349445 CCTTGTTTATGGCGTTTATACCAACA 60.349 38.462 0.00 0.00 39.96 3.33
2870 3192 5.940595 TGTTTATGGCGTTTATACCAACAC 58.059 37.500 0.00 0.00 39.96 3.32
2871 3193 5.472478 TGTTTATGGCGTTTATACCAACACA 59.528 36.000 0.00 0.00 39.96 3.72
2872 3194 6.151312 TGTTTATGGCGTTTATACCAACACAT 59.849 34.615 0.00 0.00 39.96 3.21
2873 3195 4.630894 ATGGCGTTTATACCAACACATG 57.369 40.909 0.00 0.00 39.96 3.21
2874 3196 3.413327 TGGCGTTTATACCAACACATGT 58.587 40.909 0.00 0.00 31.46 3.21
2875 3197 3.189495 TGGCGTTTATACCAACACATGTG 59.811 43.478 24.25 24.25 31.46 3.21
2876 3198 3.168193 GCGTTTATACCAACACATGTGC 58.832 45.455 25.68 2.88 0.00 4.57
2877 3199 3.119990 GCGTTTATACCAACACATGTGCT 60.120 43.478 25.68 11.31 0.00 4.40
2878 3200 4.402583 CGTTTATACCAACACATGTGCTG 58.597 43.478 25.68 22.68 0.00 4.41
2879 3201 4.083537 CGTTTATACCAACACATGTGCTGT 60.084 41.667 25.68 20.36 39.20 4.40
2880 3202 5.390613 GTTTATACCAACACATGTGCTGTC 58.609 41.667 25.68 4.65 35.29 3.51
2881 3203 2.629336 TACCAACACATGTGCTGTCA 57.371 45.000 25.68 10.42 35.29 3.58
2882 3204 1.024271 ACCAACACATGTGCTGTCAC 58.976 50.000 25.68 0.00 43.40 3.67
2883 3205 1.311859 CCAACACATGTGCTGTCACT 58.688 50.000 25.68 0.98 43.49 3.41
2884 3206 1.677576 CCAACACATGTGCTGTCACTT 59.322 47.619 25.68 7.74 43.49 3.16
2885 3207 2.099592 CCAACACATGTGCTGTCACTTT 59.900 45.455 25.68 6.99 43.49 2.66
2886 3208 3.429272 CCAACACATGTGCTGTCACTTTT 60.429 43.478 25.68 6.25 43.49 2.27
2887 3209 4.202000 CCAACACATGTGCTGTCACTTTTA 60.202 41.667 25.68 0.00 43.49 1.52
2888 3210 5.507817 CCAACACATGTGCTGTCACTTTTAT 60.508 40.000 25.68 0.00 43.49 1.40
2889 3211 5.362556 ACACATGTGCTGTCACTTTTATC 57.637 39.130 25.68 0.00 43.49 1.75
2890 3212 5.065914 ACACATGTGCTGTCACTTTTATCT 58.934 37.500 25.68 0.00 43.49 1.98
2891 3213 6.230472 ACACATGTGCTGTCACTTTTATCTA 58.770 36.000 25.68 0.00 43.49 1.98
2892 3214 6.369890 ACACATGTGCTGTCACTTTTATCTAG 59.630 38.462 25.68 0.00 43.49 2.43
2893 3215 6.591448 CACATGTGCTGTCACTTTTATCTAGA 59.409 38.462 13.94 0.00 43.49 2.43
2894 3216 6.591834 ACATGTGCTGTCACTTTTATCTAGAC 59.408 38.462 0.00 0.00 43.49 2.59
2895 3217 6.346477 TGTGCTGTCACTTTTATCTAGACT 57.654 37.500 0.00 0.00 43.49 3.24
2896 3218 7.462571 TGTGCTGTCACTTTTATCTAGACTA 57.537 36.000 0.00 0.00 43.49 2.59
2897 3219 7.539436 TGTGCTGTCACTTTTATCTAGACTAG 58.461 38.462 2.81 2.81 43.49 2.57
2898 3220 7.393515 TGTGCTGTCACTTTTATCTAGACTAGA 59.606 37.037 14.53 14.53 43.49 2.43
2899 3221 8.244802 GTGCTGTCACTTTTATCTAGACTAGAA 58.755 37.037 16.04 3.69 40.03 2.10
2900 3222 8.803235 TGCTGTCACTTTTATCTAGACTAGAAA 58.197 33.333 16.04 9.07 38.50 2.52
2901 3223 9.810545 GCTGTCACTTTTATCTAGACTAGAAAT 57.189 33.333 16.04 3.73 38.50 2.17
2903 3225 9.587772 TGTCACTTTTATCTAGACTAGAAATGC 57.412 33.333 16.04 6.12 38.50 3.56
2904 3226 9.036671 GTCACTTTTATCTAGACTAGAAATGCC 57.963 37.037 16.04 0.00 38.50 4.40
2905 3227 8.204836 TCACTTTTATCTAGACTAGAAATGCCC 58.795 37.037 16.04 0.00 38.50 5.36
2906 3228 8.207545 CACTTTTATCTAGACTAGAAATGCCCT 58.792 37.037 16.04 0.91 38.50 5.19
2907 3229 8.773216 ACTTTTATCTAGACTAGAAATGCCCTT 58.227 33.333 16.04 0.20 38.50 3.95
2908 3230 9.620259 CTTTTATCTAGACTAGAAATGCCCTTT 57.380 33.333 16.04 0.00 38.50 3.11
2909 3231 8.964476 TTTATCTAGACTAGAAATGCCCTTTG 57.036 34.615 16.04 0.00 38.50 2.77
2910 3232 4.770795 TCTAGACTAGAAATGCCCTTTGC 58.229 43.478 9.85 0.00 41.77 3.68
2911 3233 3.728385 AGACTAGAAATGCCCTTTGCT 57.272 42.857 0.00 0.00 42.00 3.91
2912 3234 4.039603 AGACTAGAAATGCCCTTTGCTT 57.960 40.909 0.00 0.00 42.00 3.91
2913 3235 4.411013 AGACTAGAAATGCCCTTTGCTTT 58.589 39.130 0.00 0.00 42.00 3.51
2914 3236 4.835056 AGACTAGAAATGCCCTTTGCTTTT 59.165 37.500 0.00 0.00 46.53 2.27
2915 3237 4.886579 ACTAGAAATGCCCTTTGCTTTTG 58.113 39.130 0.00 0.00 44.62 2.44
2916 3238 3.843893 AGAAATGCCCTTTGCTTTTGT 57.156 38.095 3.21 0.00 44.62 2.83
2917 3239 3.732212 AGAAATGCCCTTTGCTTTTGTC 58.268 40.909 3.21 0.00 44.62 3.18
2918 3240 3.134442 AGAAATGCCCTTTGCTTTTGTCA 59.866 39.130 3.21 0.00 44.62 3.58
2919 3241 2.825861 ATGCCCTTTGCTTTTGTCAG 57.174 45.000 0.00 0.00 42.00 3.51
2920 3242 1.774110 TGCCCTTTGCTTTTGTCAGA 58.226 45.000 0.00 0.00 42.00 3.27
2921 3243 1.408702 TGCCCTTTGCTTTTGTCAGAC 59.591 47.619 0.00 0.00 42.00 3.51
2922 3244 1.683385 GCCCTTTGCTTTTGTCAGACT 59.317 47.619 1.31 0.00 36.87 3.24
2923 3245 2.287849 GCCCTTTGCTTTTGTCAGACTC 60.288 50.000 1.31 0.00 36.87 3.36
2924 3246 3.217626 CCCTTTGCTTTTGTCAGACTCT 58.782 45.455 1.31 0.00 0.00 3.24
2925 3247 3.251972 CCCTTTGCTTTTGTCAGACTCTC 59.748 47.826 1.31 0.00 0.00 3.20
2926 3248 4.133078 CCTTTGCTTTTGTCAGACTCTCT 58.867 43.478 1.31 0.00 0.00 3.10
2927 3249 4.578105 CCTTTGCTTTTGTCAGACTCTCTT 59.422 41.667 1.31 0.00 0.00 2.85
2928 3250 5.490139 TTTGCTTTTGTCAGACTCTCTTG 57.510 39.130 1.31 0.00 0.00 3.02
2929 3251 2.874701 TGCTTTTGTCAGACTCTCTTGC 59.125 45.455 1.31 0.22 0.00 4.01
2930 3252 2.874701 GCTTTTGTCAGACTCTCTTGCA 59.125 45.455 1.31 0.00 0.00 4.08
2931 3253 3.501445 GCTTTTGTCAGACTCTCTTGCAT 59.499 43.478 1.31 0.00 0.00 3.96
2932 3254 4.613167 GCTTTTGTCAGACTCTCTTGCATG 60.613 45.833 1.31 0.00 0.00 4.06
2933 3255 3.758755 TTGTCAGACTCTCTTGCATGT 57.241 42.857 1.31 0.00 0.00 3.21
2934 3256 3.036075 TGTCAGACTCTCTTGCATGTG 57.964 47.619 1.31 0.00 0.00 3.21
2935 3257 2.289257 TGTCAGACTCTCTTGCATGTGG 60.289 50.000 1.31 0.00 0.00 4.17
2936 3258 2.028658 GTCAGACTCTCTTGCATGTGGA 60.029 50.000 0.00 0.00 0.00 4.02
2937 3259 2.836372 TCAGACTCTCTTGCATGTGGAT 59.164 45.455 0.00 0.00 0.00 3.41
2938 3260 4.026052 TCAGACTCTCTTGCATGTGGATA 58.974 43.478 0.00 0.00 0.00 2.59
2939 3261 4.652881 TCAGACTCTCTTGCATGTGGATAT 59.347 41.667 0.00 0.00 0.00 1.63
2940 3262 4.989797 CAGACTCTCTTGCATGTGGATATC 59.010 45.833 0.00 0.00 0.00 1.63
2941 3263 4.900652 AGACTCTCTTGCATGTGGATATCT 59.099 41.667 2.05 3.97 0.00 1.98
2942 3264 5.366186 AGACTCTCTTGCATGTGGATATCTT 59.634 40.000 2.05 0.00 0.00 2.40
2943 3265 5.609423 ACTCTCTTGCATGTGGATATCTTC 58.391 41.667 2.05 0.00 0.00 2.87
2944 3266 4.625028 TCTCTTGCATGTGGATATCTTCG 58.375 43.478 2.05 0.00 0.00 3.79
2945 3267 4.100035 TCTCTTGCATGTGGATATCTTCGT 59.900 41.667 2.05 0.00 0.00 3.85
2946 3268 4.371786 TCTTGCATGTGGATATCTTCGTC 58.628 43.478 2.05 0.00 0.00 4.20
2947 3269 3.111853 TGCATGTGGATATCTTCGTCC 57.888 47.619 2.05 0.00 35.02 4.79
2948 3270 2.433970 TGCATGTGGATATCTTCGTCCA 59.566 45.455 2.05 0.00 42.03 4.02
2949 3271 3.118445 TGCATGTGGATATCTTCGTCCAA 60.118 43.478 2.05 0.00 45.50 3.53
2950 3272 3.876914 GCATGTGGATATCTTCGTCCAAA 59.123 43.478 2.05 0.00 45.50 3.28
2951 3273 4.335315 GCATGTGGATATCTTCGTCCAAAA 59.665 41.667 2.05 0.00 45.50 2.44
2952 3274 5.163663 GCATGTGGATATCTTCGTCCAAAAA 60.164 40.000 2.05 0.00 45.50 1.94
2953 3275 6.460123 GCATGTGGATATCTTCGTCCAAAAAT 60.460 38.462 2.05 0.00 45.50 1.82
2954 3276 7.255104 GCATGTGGATATCTTCGTCCAAAAATA 60.255 37.037 2.05 0.00 45.50 1.40
2955 3277 8.786898 CATGTGGATATCTTCGTCCAAAAATAT 58.213 33.333 2.05 0.00 45.50 1.28
2956 3278 8.746052 TGTGGATATCTTCGTCCAAAAATATT 57.254 30.769 2.05 0.00 45.50 1.28
2957 3279 9.839817 TGTGGATATCTTCGTCCAAAAATATTA 57.160 29.630 2.05 0.00 45.50 0.98
2962 3284 9.825972 ATATCTTCGTCCAAAAATATTAATGCG 57.174 29.630 0.00 0.00 0.00 4.73
2963 3285 5.968848 TCTTCGTCCAAAAATATTAATGCGC 59.031 36.000 0.00 0.00 0.00 6.09
2964 3286 5.236655 TCGTCCAAAAATATTAATGCGCA 57.763 34.783 14.96 14.96 0.00 6.09
2965 3287 5.031578 TCGTCCAAAAATATTAATGCGCAC 58.968 37.500 14.90 0.00 0.00 5.34
2966 3288 5.034152 CGTCCAAAAATATTAATGCGCACT 58.966 37.500 14.90 3.33 0.00 4.40
2967 3289 6.037281 TCGTCCAAAAATATTAATGCGCACTA 59.963 34.615 14.90 1.81 0.00 2.74
2968 3290 6.140108 CGTCCAAAAATATTAATGCGCACTAC 59.860 38.462 14.90 0.00 0.00 2.73
2969 3291 6.970043 GTCCAAAAATATTAATGCGCACTACA 59.030 34.615 14.90 0.00 0.00 2.74
2970 3292 7.647715 GTCCAAAAATATTAATGCGCACTACAT 59.352 33.333 14.90 5.24 0.00 2.29
2971 3293 8.194104 TCCAAAAATATTAATGCGCACTACATT 58.806 29.630 14.90 5.08 40.68 2.71
2972 3294 8.479280 CCAAAAATATTAATGCGCACTACATTC 58.521 33.333 14.90 0.00 38.62 2.67
2973 3295 8.479280 CAAAAATATTAATGCGCACTACATTCC 58.521 33.333 14.90 0.00 38.62 3.01
2974 3296 3.878086 ATTAATGCGCACTACATTCCG 57.122 42.857 14.90 0.00 38.62 4.30
2975 3297 1.577468 TAATGCGCACTACATTCCGG 58.423 50.000 14.90 0.00 38.62 5.14
2976 3298 0.107897 AATGCGCACTACATTCCGGA 60.108 50.000 14.90 0.00 32.28 5.14
2977 3299 0.107897 ATGCGCACTACATTCCGGAA 60.108 50.000 21.37 21.37 0.00 4.30
2978 3300 0.107897 TGCGCACTACATTCCGGAAT 60.108 50.000 24.27 24.27 0.00 3.01
2979 3301 1.014352 GCGCACTACATTCCGGAATT 58.986 50.000 27.21 19.26 0.00 2.17
2980 3302 1.400494 GCGCACTACATTCCGGAATTT 59.600 47.619 27.21 22.93 0.00 1.82
2981 3303 2.538939 GCGCACTACATTCCGGAATTTC 60.539 50.000 27.21 8.19 0.00 2.17
2982 3304 2.675844 CGCACTACATTCCGGAATTTCA 59.324 45.455 27.21 13.55 0.00 2.69
2983 3305 3.312421 CGCACTACATTCCGGAATTTCAT 59.688 43.478 27.21 14.80 0.00 2.57
2984 3306 4.552767 CGCACTACATTCCGGAATTTCATC 60.553 45.833 27.21 13.17 0.00 2.92
2985 3307 4.261197 GCACTACATTCCGGAATTTCATCC 60.261 45.833 27.21 10.83 36.05 3.51
2986 3308 4.881273 CACTACATTCCGGAATTTCATCCA 59.119 41.667 27.21 4.81 39.61 3.41
2987 3309 5.356751 CACTACATTCCGGAATTTCATCCAA 59.643 40.000 27.21 4.07 39.61 3.53
2988 3310 5.949354 ACTACATTCCGGAATTTCATCCAAA 59.051 36.000 27.21 3.34 39.61 3.28
2989 3311 5.736951 ACATTCCGGAATTTCATCCAAAA 57.263 34.783 27.21 0.00 39.61 2.44
2990 3312 5.478407 ACATTCCGGAATTTCATCCAAAAC 58.522 37.500 27.21 0.00 39.61 2.43
2991 3313 4.529109 TTCCGGAATTTCATCCAAAACC 57.471 40.909 14.35 0.00 39.61 3.27
2992 3314 3.773560 TCCGGAATTTCATCCAAAACCT 58.226 40.909 0.00 0.00 39.61 3.50
2993 3315 4.156477 TCCGGAATTTCATCCAAAACCTT 58.844 39.130 0.00 0.00 39.61 3.50
2994 3316 5.326069 TCCGGAATTTCATCCAAAACCTTA 58.674 37.500 0.00 0.00 39.61 2.69
2995 3317 5.955355 TCCGGAATTTCATCCAAAACCTTAT 59.045 36.000 0.00 0.00 39.61 1.73
2996 3318 7.120051 TCCGGAATTTCATCCAAAACCTTATA 58.880 34.615 0.00 0.00 39.61 0.98
2997 3319 7.067737 TCCGGAATTTCATCCAAAACCTTATAC 59.932 37.037 0.00 0.00 39.61 1.47
2998 3320 6.910433 CGGAATTTCATCCAAAACCTTATACG 59.090 38.462 0.00 0.00 39.61 3.06
2999 3321 6.695713 GGAATTTCATCCAAAACCTTATACGC 59.304 38.462 0.00 0.00 39.42 4.42
3000 3322 6.767524 ATTTCATCCAAAACCTTATACGCA 57.232 33.333 0.00 0.00 0.00 5.24
3001 3323 5.554822 TTCATCCAAAACCTTATACGCAC 57.445 39.130 0.00 0.00 0.00 5.34
3002 3324 4.839121 TCATCCAAAACCTTATACGCACT 58.161 39.130 0.00 0.00 0.00 4.40
3003 3325 5.979993 TCATCCAAAACCTTATACGCACTA 58.020 37.500 0.00 0.00 0.00 2.74
3004 3326 6.588204 TCATCCAAAACCTTATACGCACTAT 58.412 36.000 0.00 0.00 0.00 2.12
3005 3327 7.728148 TCATCCAAAACCTTATACGCACTATA 58.272 34.615 0.00 0.00 0.00 1.31
3006 3328 8.205512 TCATCCAAAACCTTATACGCACTATAA 58.794 33.333 0.00 0.00 0.00 0.98
3007 3329 8.999431 CATCCAAAACCTTATACGCACTATAAT 58.001 33.333 0.00 0.00 28.67 1.28
3014 3336 9.649167 AACCTTATACGCACTATAATATGGAAC 57.351 33.333 0.00 0.00 28.67 3.62
3015 3337 9.032624 ACCTTATACGCACTATAATATGGAACT 57.967 33.333 0.00 0.00 28.67 3.01
3016 3338 9.302345 CCTTATACGCACTATAATATGGAACTG 57.698 37.037 0.00 0.00 28.67 3.16
3019 3341 5.784177 ACGCACTATAATATGGAACTGAGG 58.216 41.667 0.00 0.00 0.00 3.86
3020 3342 5.171476 CGCACTATAATATGGAACTGAGGG 58.829 45.833 0.00 0.00 0.00 4.30
3021 3343 5.047306 CGCACTATAATATGGAACTGAGGGA 60.047 44.000 0.00 0.00 0.00 4.20
3022 3344 6.402222 GCACTATAATATGGAACTGAGGGAG 58.598 44.000 0.00 0.00 0.00 4.30
3023 3345 6.014156 GCACTATAATATGGAACTGAGGGAGT 60.014 42.308 0.00 0.00 35.94 3.85
3024 3346 7.178628 GCACTATAATATGGAACTGAGGGAGTA 59.821 40.741 0.00 0.00 33.09 2.59
3025 3347 9.090103 CACTATAATATGGAACTGAGGGAGTAA 57.910 37.037 0.00 0.00 33.09 2.24
3026 3348 9.845214 ACTATAATATGGAACTGAGGGAGTAAT 57.155 33.333 0.00 0.00 33.09 1.89
3029 3351 9.845214 ATAATATGGAACTGAGGGAGTAATAGT 57.155 33.333 0.00 0.00 33.09 2.12
3031 3353 9.670442 AATATGGAACTGAGGGAGTAATAGTAA 57.330 33.333 0.00 0.00 33.09 2.24
3032 3354 9.845214 ATATGGAACTGAGGGAGTAATAGTAAT 57.155 33.333 0.00 0.00 33.09 1.89
3034 3356 8.474710 TGGAACTGAGGGAGTAATAGTAATAC 57.525 38.462 0.00 0.00 33.09 1.89
3035 3357 7.508296 TGGAACTGAGGGAGTAATAGTAATACC 59.492 40.741 0.00 0.00 33.09 2.73
3042 3364 8.480133 AGGGAGTAATAGTAATACCTGAACAG 57.520 38.462 0.00 0.00 37.25 3.16
3047 3369 9.924010 AGTAATAGTAATACCTGAACAGTCTCT 57.076 33.333 1.18 0.00 0.00 3.10
3061 3383 1.274728 AGTCTCTCTGTGCTTCGCAAT 59.725 47.619 0.00 0.00 41.47 3.56
3066 3388 4.330894 TCTCTCTGTGCTTCGCAATAAATG 59.669 41.667 0.00 0.00 41.47 2.32
3081 3403 6.913873 CAATAAATGCCAAAAAGGATCAGG 57.086 37.500 0.00 0.00 41.22 3.86
3086 3408 1.203287 GCCAAAAAGGATCAGGACTGC 59.797 52.381 0.00 0.00 41.22 4.40
3087 3409 2.517959 CCAAAAAGGATCAGGACTGCA 58.482 47.619 0.00 0.00 41.22 4.41
3090 3412 2.957402 AAAGGATCAGGACTGCACAA 57.043 45.000 0.00 0.00 0.00 3.33
3092 3414 4.574674 AAAGGATCAGGACTGCACAATA 57.425 40.909 0.00 0.00 0.00 1.90
3093 3415 3.834489 AGGATCAGGACTGCACAATAG 57.166 47.619 0.00 0.00 0.00 1.73
3094 3416 3.110705 AGGATCAGGACTGCACAATAGT 58.889 45.455 0.00 0.00 0.00 2.12
3096 3418 4.100189 AGGATCAGGACTGCACAATAGTAC 59.900 45.833 0.00 0.00 0.00 2.73
3097 3419 4.100189 GGATCAGGACTGCACAATAGTACT 59.900 45.833 0.00 0.00 39.94 2.73
3098 3420 5.395768 GGATCAGGACTGCACAATAGTACTT 60.396 44.000 0.00 0.00 37.23 2.24
3099 3421 4.820897 TCAGGACTGCACAATAGTACTTG 58.179 43.478 0.00 0.00 37.23 3.16
3100 3422 3.372206 CAGGACTGCACAATAGTACTTGC 59.628 47.826 9.83 9.83 37.23 4.01
3101 3423 2.678336 GGACTGCACAATAGTACTTGCC 59.322 50.000 13.36 0.47 33.86 4.52
3104 3426 4.335416 ACTGCACAATAGTACTTGCCATT 58.665 39.130 13.36 0.00 33.86 3.16
3105 3427 4.156556 ACTGCACAATAGTACTTGCCATTG 59.843 41.667 13.36 12.92 33.86 2.82
3106 3428 4.331108 TGCACAATAGTACTTGCCATTGA 58.669 39.130 18.61 0.00 33.86 2.57
3107 3429 4.395854 TGCACAATAGTACTTGCCATTGAG 59.604 41.667 18.61 13.38 33.86 3.02
3109 3431 5.123820 GCACAATAGTACTTGCCATTGAGAA 59.876 40.000 18.61 0.00 33.56 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.754850 ACATACGCAGGCACTCGTATATA 59.245 43.478 14.85 0.00 45.61 0.86
1 2 2.557056 ACATACGCAGGCACTCGTATAT 59.443 45.455 14.85 5.22 45.61 0.86
2 3 1.951602 ACATACGCAGGCACTCGTATA 59.048 47.619 14.85 0.00 45.61 1.47
4 5 1.381522 TACATACGCAGGCACTCGTA 58.618 50.000 8.00 8.00 43.87 3.43
5 6 0.744874 ATACATACGCAGGCACTCGT 59.255 50.000 4.35 4.35 42.60 4.18
7 8 3.243434 ACACTATACATACGCAGGCACTC 60.243 47.826 0.00 0.00 34.60 3.51
9 10 3.093717 ACACTATACATACGCAGGCAC 57.906 47.619 0.00 0.00 0.00 5.01
10 11 3.812156 AACACTATACATACGCAGGCA 57.188 42.857 0.00 0.00 0.00 4.75
11 12 6.592798 TTTTAACACTATACATACGCAGGC 57.407 37.500 0.00 0.00 0.00 4.85
34 35 9.973246 CTACGCGCTATGATATGATTTTATTTT 57.027 29.630 5.73 0.00 0.00 1.82
35 36 8.604035 CCTACGCGCTATGATATGATTTTATTT 58.396 33.333 5.73 0.00 0.00 1.40
36 37 7.979537 TCCTACGCGCTATGATATGATTTTATT 59.020 33.333 5.73 0.00 0.00 1.40
37 38 7.435488 GTCCTACGCGCTATGATATGATTTTAT 59.565 37.037 5.73 0.00 0.00 1.40
38 39 6.750501 GTCCTACGCGCTATGATATGATTTTA 59.249 38.462 5.73 0.00 0.00 1.52
39 40 5.577164 GTCCTACGCGCTATGATATGATTTT 59.423 40.000 5.73 0.00 0.00 1.82
60 61 6.037098 TCGAGTAAAGTACTAGTAGACGTCC 58.963 44.000 13.01 0.00 39.59 4.79
71 72 2.157738 ACACCGCTCGAGTAAAGTACT 58.842 47.619 15.13 0.00 42.86 2.73
72 73 2.513893 GACACCGCTCGAGTAAAGTAC 58.486 52.381 15.13 0.00 0.00 2.73
73 74 1.470098 GGACACCGCTCGAGTAAAGTA 59.530 52.381 15.13 0.00 0.00 2.24
74 75 0.243095 GGACACCGCTCGAGTAAAGT 59.757 55.000 15.13 8.29 0.00 2.66
75 76 0.797249 CGGACACCGCTCGAGTAAAG 60.797 60.000 15.13 4.98 41.17 1.85
76 77 1.210931 CGGACACCGCTCGAGTAAA 59.789 57.895 15.13 0.00 41.17 2.01
77 78 2.693762 CCGGACACCGCTCGAGTAA 61.694 63.158 15.13 0.00 46.86 2.24
98 99 1.379443 CATCCTGCATGGTGTGGCT 60.379 57.895 0.00 0.00 37.07 4.75
100 101 3.203442 GCATCCTGCATGGTGTGG 58.797 61.111 4.09 0.00 44.26 4.17
109 110 3.823330 GCACCTGCTGCATCCTGC 61.823 66.667 1.31 6.68 46.29 4.85
123 124 4.932105 TTGGTTGGGGCCCTGCAC 62.932 66.667 25.93 17.16 0.00 4.57
177 178 0.652592 GCGCATTGCACCTGTAGTAG 59.347 55.000 9.69 0.00 45.45 2.57
185 186 2.504681 CTTTCCGCGCATTGCACC 60.505 61.111 8.75 0.00 46.97 5.01
243 244 1.905894 GGAGAGAAAGGGAAGCACTCT 59.094 52.381 0.00 0.00 40.05 3.24
247 248 0.836400 ACGGGAGAGAAAGGGAAGCA 60.836 55.000 0.00 0.00 0.00 3.91
253 254 1.446272 GCGTGACGGGAGAGAAAGG 60.446 63.158 7.25 0.00 0.00 3.11
304 315 0.250295 TCCCTTCTGTTTCCTGTGCG 60.250 55.000 0.00 0.00 0.00 5.34
532 578 7.039784 CCACAGTAGAGGGATTGAATTGAAAAA 60.040 37.037 0.00 0.00 0.00 1.94
533 579 6.434028 CCACAGTAGAGGGATTGAATTGAAAA 59.566 38.462 0.00 0.00 0.00 2.29
534 580 5.945784 CCACAGTAGAGGGATTGAATTGAAA 59.054 40.000 0.00 0.00 0.00 2.69
570 616 2.663478 GCGGTTGCGTCACGAATCA 61.663 57.895 0.00 0.00 0.00 2.57
729 791 3.016736 GTGGAATGAGTATGGGTTGTGG 58.983 50.000 0.00 0.00 0.00 4.17
735 797 3.912496 TGACAGTGGAATGAGTATGGG 57.088 47.619 0.00 0.00 0.00 4.00
753 815 3.387091 CCCGTGGGTCCGTCATGA 61.387 66.667 0.00 0.00 0.00 3.07
770 832 2.042639 ATGCCTGGGCCATGTTCC 60.043 61.111 6.72 0.00 41.09 3.62
772 834 1.380785 CTGATGCCTGGGCCATGTT 60.381 57.895 6.72 0.00 41.09 2.71
797 859 3.818787 CACGCTCATGCTTGGCCC 61.819 66.667 0.00 0.00 35.19 5.80
809 871 4.021925 GGGTGCTTCTCCCACGCT 62.022 66.667 0.00 0.00 44.05 5.07
874 936 1.153349 GGGATCGTTGGGAGAGCAC 60.153 63.158 0.00 0.00 0.00 4.40
878 940 1.229368 TGGTGGGATCGTTGGGAGA 60.229 57.895 0.00 0.00 0.00 3.71
915 977 0.818445 GCAGATCTGGCTGTGGATGG 60.818 60.000 23.89 0.00 38.17 3.51
916 978 0.180642 AGCAGATCTGGCTGTGGATG 59.819 55.000 23.89 0.00 40.80 3.51
917 979 0.469070 GAGCAGATCTGGCTGTGGAT 59.531 55.000 23.89 0.00 42.78 3.41
932 994 1.225983 CGAGAGAGAGGGGAGAGCA 59.774 63.158 0.00 0.00 0.00 4.26
944 1197 2.223595 GCGATTTCTGTGGATCGAGAGA 60.224 50.000 9.62 0.09 45.90 3.10
971 1261 1.215647 GTCTTGGCGATCTCGGTGT 59.784 57.895 1.34 0.00 40.23 4.16
976 1266 1.586564 CGACGGTCTTGGCGATCTC 60.587 63.158 6.57 0.00 0.00 2.75
1086 1376 2.829458 CCGGAGAGGGAGACGACC 60.829 72.222 0.00 0.00 35.97 4.79
1305 1595 3.920093 CTTGACCGGAACAGGGCCC 62.920 68.421 16.46 16.46 39.00 5.80
1314 1604 2.049802 GCGACGAACTTGACCGGA 60.050 61.111 9.46 0.00 0.00 5.14
1389 1679 1.974875 TGTCACCTCGCCGAGCTTA 60.975 57.895 9.01 0.00 0.00 3.09
1398 1688 3.596066 CTGGCCCTGTGTCACCTCG 62.596 68.421 0.00 0.00 0.00 4.63
1653 1943 4.704833 GGCTCGCCTGTCTTGCCA 62.705 66.667 0.00 0.00 42.79 4.92
1656 1946 1.817099 GGATGGCTCGCCTGTCTTG 60.817 63.158 9.65 0.00 36.94 3.02
1872 2162 4.832608 CCGTACCCTCCTTGCGGC 62.833 72.222 0.00 0.00 35.90 6.53
2052 2342 1.374252 GTAGCCGGCATCATACCCG 60.374 63.158 31.54 0.00 43.97 5.28
2168 2459 7.736447 AAATCTGAAGACGAAAGAACTGAAT 57.264 32.000 0.00 0.00 0.00 2.57
2195 2487 4.868900 CGCCGGCGATTTTGAGCG 62.869 66.667 44.86 12.52 42.83 5.03
2219 2511 1.538849 CCATATCACACTAGCAGCGCA 60.539 52.381 11.47 0.00 0.00 6.09
2269 2561 8.669243 CCCAATAGAGACAGAAATTTACAGAAC 58.331 37.037 0.00 0.00 0.00 3.01
2272 2564 6.825721 AGCCCAATAGAGACAGAAATTTACAG 59.174 38.462 0.00 0.00 0.00 2.74
2275 2567 6.049149 CGAGCCCAATAGAGACAGAAATTTA 58.951 40.000 0.00 0.00 0.00 1.40
2278 2571 3.706594 TCGAGCCCAATAGAGACAGAAAT 59.293 43.478 0.00 0.00 0.00 2.17
2282 2575 3.648009 GATTCGAGCCCAATAGAGACAG 58.352 50.000 0.00 0.00 0.00 3.51
2295 2588 3.803555 CCAAATTATCAGCGATTCGAGC 58.196 45.455 10.88 0.00 0.00 5.03
2304 2597 2.094752 ACAACACGGCCAAATTATCAGC 60.095 45.455 2.24 0.00 0.00 4.26
2312 2605 1.135257 CACAAAGACAACACGGCCAAA 60.135 47.619 2.24 0.00 0.00 3.28
2321 2614 5.978919 TCAAATGAATGAGCACAAAGACAAC 59.021 36.000 0.00 0.00 0.00 3.32
2377 2677 5.775701 ACCACAAGACTAGAACATCACTACT 59.224 40.000 0.00 0.00 0.00 2.57
2378 2678 6.026947 ACCACAAGACTAGAACATCACTAC 57.973 41.667 0.00 0.00 0.00 2.73
2379 2679 6.266786 TCAACCACAAGACTAGAACATCACTA 59.733 38.462 0.00 0.00 0.00 2.74
2380 2680 5.070446 TCAACCACAAGACTAGAACATCACT 59.930 40.000 0.00 0.00 0.00 3.41
2381 2681 5.177696 GTCAACCACAAGACTAGAACATCAC 59.822 44.000 0.00 0.00 0.00 3.06
2382 2682 5.297547 GTCAACCACAAGACTAGAACATCA 58.702 41.667 0.00 0.00 0.00 3.07
2383 2683 4.386049 CGTCAACCACAAGACTAGAACATC 59.614 45.833 0.00 0.00 32.68 3.06
2386 2686 3.489785 CACGTCAACCACAAGACTAGAAC 59.510 47.826 0.00 0.00 32.68 3.01
2391 2691 2.396590 AACACGTCAACCACAAGACT 57.603 45.000 0.00 0.00 32.68 3.24
2424 2724 2.794350 CACGCCAAGTTTTCCAACATTC 59.206 45.455 0.00 0.00 35.05 2.67
2490 2799 2.180769 GAAAATTCCACCGGCCGC 59.819 61.111 22.85 0.00 0.00 6.53
2517 2828 3.412386 ACCCAGAGAAGAAATTTCCACG 58.588 45.455 14.61 0.00 0.00 4.94
2519 2830 6.003950 CACTAACCCAGAGAAGAAATTTCCA 58.996 40.000 14.61 0.00 0.00 3.53
2530 2841 3.165875 CACTCTTCCACTAACCCAGAGA 58.834 50.000 1.55 0.00 35.51 3.10
2556 2869 1.073444 GAACCGGAAGTTTCTTCCCCT 59.927 52.381 9.46 7.03 39.40 4.79
2557 2870 1.531423 GAACCGGAAGTTTCTTCCCC 58.469 55.000 9.46 6.20 39.40 4.81
2559 2872 2.159327 TCGAACCGGAAGTTTCTTCC 57.841 50.000 9.46 15.97 39.40 3.46
2560 2873 4.524749 CTTTTCGAACCGGAAGTTTCTTC 58.475 43.478 9.46 0.00 39.40 2.87
2581 2902 3.314331 CACTGCCCTCCACGACCT 61.314 66.667 0.00 0.00 0.00 3.85
2582 2903 3.178540 AACACTGCCCTCCACGACC 62.179 63.158 0.00 0.00 0.00 4.79
2588 2909 2.331265 GTGTTCAACACTGCCCTCC 58.669 57.895 13.77 0.00 45.27 4.30
2600 2921 1.337728 CCATACAGTGCCGAGTGTTCA 60.338 52.381 0.00 0.00 37.01 3.18
2602 2923 0.685097 ACCATACAGTGCCGAGTGTT 59.315 50.000 0.00 0.00 37.01 3.32
2634 2956 1.136565 CACCAAACGGCGCCATTAG 59.863 57.895 28.98 15.45 0.00 1.73
2635 2957 2.983930 GCACCAAACGGCGCCATTA 61.984 57.895 28.98 0.00 0.00 1.90
2642 2964 2.027460 CAGTTGGCACCAAACGGC 59.973 61.111 3.10 0.00 37.70 5.68
2644 2966 2.780094 TGGCAGTTGGCACCAAACG 61.780 57.895 3.10 0.00 46.12 3.60
2672 2994 1.742831 TGCACGAATAAGATTGCACCC 59.257 47.619 0.00 0.00 40.01 4.61
2673 2995 2.677836 TCTGCACGAATAAGATTGCACC 59.322 45.455 0.00 0.00 40.01 5.01
2674 2996 3.485877 GGTCTGCACGAATAAGATTGCAC 60.486 47.826 0.00 0.00 40.01 4.57
2675 2997 2.677836 GGTCTGCACGAATAAGATTGCA 59.322 45.455 0.00 0.00 42.60 4.08
2676 2998 2.677836 TGGTCTGCACGAATAAGATTGC 59.322 45.455 0.00 0.00 35.45 3.56
2677 2999 4.183865 TCTGGTCTGCACGAATAAGATTG 58.816 43.478 0.00 0.00 0.00 2.67
2678 3000 4.471904 TCTGGTCTGCACGAATAAGATT 57.528 40.909 0.00 0.00 0.00 2.40
2679 3001 4.081420 AGTTCTGGTCTGCACGAATAAGAT 60.081 41.667 0.00 0.00 0.00 2.40
2680 3002 3.258372 AGTTCTGGTCTGCACGAATAAGA 59.742 43.478 0.00 0.00 0.00 2.10
2681 3003 3.369147 CAGTTCTGGTCTGCACGAATAAG 59.631 47.826 0.00 0.00 0.00 1.73
2682 3004 3.006430 TCAGTTCTGGTCTGCACGAATAA 59.994 43.478 0.00 0.00 33.48 1.40
2683 3005 2.560981 TCAGTTCTGGTCTGCACGAATA 59.439 45.455 0.00 0.00 33.48 1.75
2684 3006 1.344438 TCAGTTCTGGTCTGCACGAAT 59.656 47.619 0.00 0.00 33.48 3.34
2685 3007 0.750249 TCAGTTCTGGTCTGCACGAA 59.250 50.000 0.00 0.00 33.48 3.85
2782 3104 3.030291 ACATTGTTGCAAAGAACAGGGA 58.970 40.909 0.00 0.00 37.16 4.20
2793 3115 9.899661 AGTACTCCTATTATTTACATTGTTGCA 57.100 29.630 0.00 0.00 0.00 4.08
2813 3135 1.064537 AGAGGAACGGAGGGAGTACTC 60.065 57.143 14.87 14.87 36.76 2.59
2814 3136 1.001282 AGAGGAACGGAGGGAGTACT 58.999 55.000 0.00 0.00 0.00 2.73
2816 3138 5.789575 ACTATATAGAGGAACGGAGGGAGTA 59.210 44.000 16.79 0.00 0.00 2.59
2817 3139 4.602732 ACTATATAGAGGAACGGAGGGAGT 59.397 45.833 16.79 0.00 0.00 3.85
2818 3140 4.944930 CACTATATAGAGGAACGGAGGGAG 59.055 50.000 16.79 0.00 0.00 4.30
2819 3141 4.810033 GCACTATATAGAGGAACGGAGGGA 60.810 50.000 16.79 0.00 0.00 4.20
2820 3142 3.444388 GCACTATATAGAGGAACGGAGGG 59.556 52.174 16.79 0.00 0.00 4.30
2821 3143 3.127203 CGCACTATATAGAGGAACGGAGG 59.873 52.174 16.79 0.00 0.00 4.30
2822 3144 3.426426 GCGCACTATATAGAGGAACGGAG 60.426 52.174 16.79 0.81 0.00 4.63
2823 3145 2.486982 GCGCACTATATAGAGGAACGGA 59.513 50.000 16.79 0.00 0.00 4.69
2824 3146 2.415625 GGCGCACTATATAGAGGAACGG 60.416 54.545 16.79 0.24 0.00 4.44
2825 3147 2.488545 AGGCGCACTATATAGAGGAACG 59.511 50.000 16.79 11.97 0.00 3.95
2826 3148 4.238514 CAAGGCGCACTATATAGAGGAAC 58.761 47.826 16.79 4.00 0.00 3.62
2827 3149 3.895656 ACAAGGCGCACTATATAGAGGAA 59.104 43.478 16.79 0.00 0.00 3.36
2828 3150 3.497332 ACAAGGCGCACTATATAGAGGA 58.503 45.455 16.79 0.00 0.00 3.71
2829 3151 3.944055 ACAAGGCGCACTATATAGAGG 57.056 47.619 16.79 8.93 0.00 3.69
2830 3152 6.311445 CCATAAACAAGGCGCACTATATAGAG 59.689 42.308 16.79 9.70 0.00 2.43
2831 3153 6.163476 CCATAAACAAGGCGCACTATATAGA 58.837 40.000 16.79 0.00 0.00 1.98
2832 3154 5.163854 GCCATAAACAAGGCGCACTATATAG 60.164 44.000 10.83 8.27 41.70 1.31
2833 3155 4.693566 GCCATAAACAAGGCGCACTATATA 59.306 41.667 10.83 0.00 41.70 0.86
2834 3156 3.502211 GCCATAAACAAGGCGCACTATAT 59.498 43.478 10.83 0.00 41.70 0.86
2835 3157 2.875933 GCCATAAACAAGGCGCACTATA 59.124 45.455 10.83 0.00 41.70 1.31
2836 3158 1.676006 GCCATAAACAAGGCGCACTAT 59.324 47.619 10.83 0.00 41.70 2.12
2837 3159 1.091537 GCCATAAACAAGGCGCACTA 58.908 50.000 10.83 0.00 41.70 2.74
2838 3160 1.883021 GCCATAAACAAGGCGCACT 59.117 52.632 10.83 0.02 41.70 4.40
2839 3161 4.476361 GCCATAAACAAGGCGCAC 57.524 55.556 10.83 0.00 41.70 5.34
2844 3166 5.821516 TGGTATAAACGCCATAAACAAGG 57.178 39.130 0.00 0.00 0.00 3.61
2845 3167 6.525280 GTGTTGGTATAAACGCCATAAACAAG 59.475 38.462 0.00 0.00 35.06 3.16
2846 3168 6.016527 TGTGTTGGTATAAACGCCATAAACAA 60.017 34.615 0.00 0.00 39.33 2.83
2847 3169 5.472478 TGTGTTGGTATAAACGCCATAAACA 59.528 36.000 0.00 0.00 39.33 2.83
2848 3170 5.940595 TGTGTTGGTATAAACGCCATAAAC 58.059 37.500 0.00 0.00 39.33 2.01
2849 3171 6.151312 ACATGTGTTGGTATAAACGCCATAAA 59.849 34.615 0.00 0.00 39.33 1.40
2850 3172 5.648526 ACATGTGTTGGTATAAACGCCATAA 59.351 36.000 0.00 0.00 39.33 1.90
2851 3173 5.065346 CACATGTGTTGGTATAAACGCCATA 59.935 40.000 18.03 0.00 39.33 2.74
2852 3174 4.013728 ACATGTGTTGGTATAAACGCCAT 58.986 39.130 0.00 0.00 39.33 4.40
2853 3175 3.189495 CACATGTGTTGGTATAAACGCCA 59.811 43.478 18.03 0.00 39.33 5.69
2854 3176 3.753842 CACATGTGTTGGTATAAACGCC 58.246 45.455 18.03 0.00 39.33 5.68
2855 3177 3.119990 AGCACATGTGTTGGTATAAACGC 60.120 43.478 26.01 7.71 40.26 4.84
2856 3178 4.083537 ACAGCACATGTGTTGGTATAAACG 60.084 41.667 35.96 15.88 44.55 3.60
2857 3179 5.049060 TGACAGCACATGTGTTGGTATAAAC 60.049 40.000 35.96 21.20 44.17 2.01
2858 3180 5.049060 GTGACAGCACATGTGTTGGTATAAA 60.049 40.000 35.96 17.82 44.17 1.40
2859 3181 4.454161 GTGACAGCACATGTGTTGGTATAA 59.546 41.667 35.96 19.24 44.17 0.98
2860 3182 4.000325 GTGACAGCACATGTGTTGGTATA 59.000 43.478 35.96 21.03 44.17 1.47
2861 3183 2.813754 GTGACAGCACATGTGTTGGTAT 59.186 45.455 35.96 21.71 44.17 2.73
2862 3184 2.217750 GTGACAGCACATGTGTTGGTA 58.782 47.619 35.96 25.07 44.17 3.25
2863 3185 1.024271 GTGACAGCACATGTGTTGGT 58.976 50.000 35.96 26.01 44.17 3.67
2864 3186 3.851620 GTGACAGCACATGTGTTGG 57.148 52.632 35.96 23.53 44.17 3.77
2873 3195 7.763356 TCTAGTCTAGATAAAAGTGACAGCAC 58.237 38.462 5.41 0.00 45.49 4.40
2874 3196 7.939784 TCTAGTCTAGATAAAAGTGACAGCA 57.060 36.000 5.41 0.00 0.00 4.41
2875 3197 9.810545 ATTTCTAGTCTAGATAAAAGTGACAGC 57.189 33.333 10.43 0.00 34.22 4.40
2877 3199 9.587772 GCATTTCTAGTCTAGATAAAAGTGACA 57.412 33.333 10.43 0.00 34.22 3.58
2878 3200 9.036671 GGCATTTCTAGTCTAGATAAAAGTGAC 57.963 37.037 10.43 1.70 34.22 3.67
2879 3201 8.204836 GGGCATTTCTAGTCTAGATAAAAGTGA 58.795 37.037 10.43 0.00 34.22 3.41
2880 3202 8.207545 AGGGCATTTCTAGTCTAGATAAAAGTG 58.792 37.037 10.43 4.33 34.22 3.16
2881 3203 8.325477 AGGGCATTTCTAGTCTAGATAAAAGT 57.675 34.615 10.43 0.00 34.22 2.66
2882 3204 9.620259 AAAGGGCATTTCTAGTCTAGATAAAAG 57.380 33.333 10.43 1.99 34.22 2.27
2883 3205 9.396022 CAAAGGGCATTTCTAGTCTAGATAAAA 57.604 33.333 10.43 2.98 34.22 1.52
2884 3206 7.499232 GCAAAGGGCATTTCTAGTCTAGATAAA 59.501 37.037 10.43 3.68 43.97 1.40
2885 3207 6.992715 GCAAAGGGCATTTCTAGTCTAGATAA 59.007 38.462 10.43 8.27 43.97 1.75
2886 3208 6.525629 GCAAAGGGCATTTCTAGTCTAGATA 58.474 40.000 10.43 6.46 43.97 1.98
2887 3209 5.372373 GCAAAGGGCATTTCTAGTCTAGAT 58.628 41.667 10.43 0.00 43.97 1.98
2888 3210 4.770795 GCAAAGGGCATTTCTAGTCTAGA 58.229 43.478 5.41 5.41 43.97 2.43
2902 3224 1.683385 AGTCTGACAAAAGCAAAGGGC 59.317 47.619 10.88 0.00 45.30 5.19
2903 3225 3.217626 AGAGTCTGACAAAAGCAAAGGG 58.782 45.455 10.88 0.00 0.00 3.95
2904 3226 4.133078 AGAGAGTCTGACAAAAGCAAAGG 58.867 43.478 10.88 0.00 0.00 3.11
2905 3227 5.508872 CAAGAGAGTCTGACAAAAGCAAAG 58.491 41.667 10.88 0.00 0.00 2.77
2906 3228 4.201950 GCAAGAGAGTCTGACAAAAGCAAA 60.202 41.667 10.88 0.00 0.00 3.68
2907 3229 3.313526 GCAAGAGAGTCTGACAAAAGCAA 59.686 43.478 10.88 0.00 0.00 3.91
2908 3230 2.874701 GCAAGAGAGTCTGACAAAAGCA 59.125 45.455 10.88 0.00 0.00 3.91
2909 3231 2.874701 TGCAAGAGAGTCTGACAAAAGC 59.125 45.455 10.88 6.77 0.00 3.51
2910 3232 4.514441 ACATGCAAGAGAGTCTGACAAAAG 59.486 41.667 10.88 0.00 0.00 2.27
2911 3233 4.274214 CACATGCAAGAGAGTCTGACAAAA 59.726 41.667 10.88 0.00 0.00 2.44
2912 3234 3.811497 CACATGCAAGAGAGTCTGACAAA 59.189 43.478 10.88 0.00 0.00 2.83
2913 3235 3.396560 CACATGCAAGAGAGTCTGACAA 58.603 45.455 10.88 0.00 0.00 3.18
2914 3236 2.289257 CCACATGCAAGAGAGTCTGACA 60.289 50.000 10.88 0.00 0.00 3.58
2915 3237 2.028658 TCCACATGCAAGAGAGTCTGAC 60.029 50.000 0.00 0.00 0.00 3.51
2916 3238 2.250924 TCCACATGCAAGAGAGTCTGA 58.749 47.619 0.00 0.00 0.00 3.27
2917 3239 2.756840 TCCACATGCAAGAGAGTCTG 57.243 50.000 0.00 0.00 0.00 3.51
2918 3240 4.900652 AGATATCCACATGCAAGAGAGTCT 59.099 41.667 0.00 0.00 0.00 3.24
2919 3241 5.212532 AGATATCCACATGCAAGAGAGTC 57.787 43.478 0.00 0.00 0.00 3.36
2920 3242 5.609423 GAAGATATCCACATGCAAGAGAGT 58.391 41.667 0.00 0.00 0.00 3.24
2921 3243 4.685165 CGAAGATATCCACATGCAAGAGAG 59.315 45.833 0.00 0.00 0.00 3.20
2922 3244 4.100035 ACGAAGATATCCACATGCAAGAGA 59.900 41.667 0.00 0.00 0.00 3.10
2923 3245 4.375272 ACGAAGATATCCACATGCAAGAG 58.625 43.478 0.00 0.00 0.00 2.85
2924 3246 4.371786 GACGAAGATATCCACATGCAAGA 58.628 43.478 0.00 0.00 0.00 3.02
2925 3247 3.496130 GGACGAAGATATCCACATGCAAG 59.504 47.826 0.00 0.00 34.87 4.01
2926 3248 3.118445 TGGACGAAGATATCCACATGCAA 60.118 43.478 0.00 0.00 40.17 4.08
2927 3249 2.433970 TGGACGAAGATATCCACATGCA 59.566 45.455 0.00 0.00 40.17 3.96
2928 3250 3.111853 TGGACGAAGATATCCACATGC 57.888 47.619 0.00 0.00 40.17 4.06
2929 3251 6.435430 TTTTTGGACGAAGATATCCACATG 57.565 37.500 0.00 0.00 44.80 3.21
2930 3252 8.924511 ATATTTTTGGACGAAGATATCCACAT 57.075 30.769 0.00 0.00 44.80 3.21
2931 3253 8.746052 AATATTTTTGGACGAAGATATCCACA 57.254 30.769 0.00 0.00 44.80 4.17
2936 3258 9.825972 CGCATTAATATTTTTGGACGAAGATAT 57.174 29.630 0.00 0.00 0.00 1.63
2937 3259 7.801315 GCGCATTAATATTTTTGGACGAAGATA 59.199 33.333 0.30 0.00 0.00 1.98
2938 3260 6.636850 GCGCATTAATATTTTTGGACGAAGAT 59.363 34.615 0.30 0.00 0.00 2.40
2939 3261 5.968848 GCGCATTAATATTTTTGGACGAAGA 59.031 36.000 0.30 0.00 0.00 2.87
2940 3262 5.741510 TGCGCATTAATATTTTTGGACGAAG 59.258 36.000 5.66 0.00 0.00 3.79
2941 3263 5.513495 GTGCGCATTAATATTTTTGGACGAA 59.487 36.000 15.91 0.00 0.00 3.85
2942 3264 5.031578 GTGCGCATTAATATTTTTGGACGA 58.968 37.500 15.91 0.00 0.00 4.20
2943 3265 5.034152 AGTGCGCATTAATATTTTTGGACG 58.966 37.500 15.91 0.00 0.00 4.79
2944 3266 6.970043 TGTAGTGCGCATTAATATTTTTGGAC 59.030 34.615 15.91 0.00 0.00 4.02
2945 3267 7.089770 TGTAGTGCGCATTAATATTTTTGGA 57.910 32.000 15.91 0.00 0.00 3.53
2946 3268 7.928908 ATGTAGTGCGCATTAATATTTTTGG 57.071 32.000 15.91 0.00 0.00 3.28
2947 3269 8.479280 GGAATGTAGTGCGCATTAATATTTTTG 58.521 33.333 15.91 0.00 36.77 2.44
2948 3270 7.378461 CGGAATGTAGTGCGCATTAATATTTTT 59.622 33.333 15.91 1.90 36.77 1.94
2949 3271 6.855914 CGGAATGTAGTGCGCATTAATATTTT 59.144 34.615 15.91 3.70 36.77 1.82
2950 3272 6.370593 CGGAATGTAGTGCGCATTAATATTT 58.629 36.000 15.91 5.53 36.77 1.40
2951 3273 5.106712 CCGGAATGTAGTGCGCATTAATATT 60.107 40.000 15.91 17.10 36.77 1.28
2952 3274 4.391830 CCGGAATGTAGTGCGCATTAATAT 59.608 41.667 15.91 9.20 36.77 1.28
2953 3275 3.743911 CCGGAATGTAGTGCGCATTAATA 59.256 43.478 15.91 7.00 36.77 0.98
2954 3276 2.548057 CCGGAATGTAGTGCGCATTAAT 59.452 45.455 15.91 7.52 36.77 1.40
2955 3277 1.937223 CCGGAATGTAGTGCGCATTAA 59.063 47.619 15.91 5.31 36.77 1.40
2956 3278 1.137282 TCCGGAATGTAGTGCGCATTA 59.863 47.619 15.91 11.94 36.77 1.90
2957 3279 0.107897 TCCGGAATGTAGTGCGCATT 60.108 50.000 15.91 13.31 39.04 3.56
2958 3280 0.107897 TTCCGGAATGTAGTGCGCAT 60.108 50.000 15.91 5.37 0.00 4.73
2959 3281 0.107897 ATTCCGGAATGTAGTGCGCA 60.108 50.000 28.72 5.66 0.00 6.09
2960 3282 1.014352 AATTCCGGAATGTAGTGCGC 58.986 50.000 29.84 0.00 0.00 6.09
2961 3283 2.675844 TGAAATTCCGGAATGTAGTGCG 59.324 45.455 29.84 0.00 0.00 5.34
2962 3284 4.261197 GGATGAAATTCCGGAATGTAGTGC 60.261 45.833 29.84 16.98 0.00 4.40
2963 3285 4.881273 TGGATGAAATTCCGGAATGTAGTG 59.119 41.667 29.84 0.00 38.74 2.74
2964 3286 5.110814 TGGATGAAATTCCGGAATGTAGT 57.889 39.130 29.84 16.10 38.74 2.73
2965 3287 6.449635 TTTGGATGAAATTCCGGAATGTAG 57.550 37.500 29.84 0.00 38.74 2.74
2966 3288 6.350612 GGTTTTGGATGAAATTCCGGAATGTA 60.351 38.462 29.84 18.62 38.74 2.29
2967 3289 5.478407 GTTTTGGATGAAATTCCGGAATGT 58.522 37.500 29.84 25.20 38.74 2.71
2968 3290 4.869861 GGTTTTGGATGAAATTCCGGAATG 59.130 41.667 29.84 0.00 38.74 2.67
2969 3291 4.777366 AGGTTTTGGATGAAATTCCGGAAT 59.223 37.500 24.27 24.27 38.74 3.01
2970 3292 4.156477 AGGTTTTGGATGAAATTCCGGAA 58.844 39.130 21.37 21.37 38.74 4.30
2971 3293 3.773560 AGGTTTTGGATGAAATTCCGGA 58.226 40.909 0.00 0.00 38.74 5.14
2972 3294 4.535526 AAGGTTTTGGATGAAATTCCGG 57.464 40.909 0.00 0.00 38.74 5.14
2973 3295 6.910433 CGTATAAGGTTTTGGATGAAATTCCG 59.090 38.462 0.00 0.00 38.74 4.30
2974 3296 6.695713 GCGTATAAGGTTTTGGATGAAATTCC 59.304 38.462 0.00 0.00 36.24 3.01
2975 3297 7.220108 GTGCGTATAAGGTTTTGGATGAAATTC 59.780 37.037 0.00 0.00 0.00 2.17
2976 3298 7.033185 GTGCGTATAAGGTTTTGGATGAAATT 58.967 34.615 0.00 0.00 0.00 1.82
2977 3299 6.377146 AGTGCGTATAAGGTTTTGGATGAAAT 59.623 34.615 0.00 0.00 0.00 2.17
2978 3300 5.708230 AGTGCGTATAAGGTTTTGGATGAAA 59.292 36.000 0.00 0.00 0.00 2.69
2979 3301 5.250200 AGTGCGTATAAGGTTTTGGATGAA 58.750 37.500 0.00 0.00 0.00 2.57
2980 3302 4.839121 AGTGCGTATAAGGTTTTGGATGA 58.161 39.130 0.00 0.00 0.00 2.92
2981 3303 6.861065 ATAGTGCGTATAAGGTTTTGGATG 57.139 37.500 0.00 0.00 0.00 3.51
2988 3310 9.649167 GTTCCATATTATAGTGCGTATAAGGTT 57.351 33.333 5.03 0.00 37.08 3.50
2989 3311 9.032624 AGTTCCATATTATAGTGCGTATAAGGT 57.967 33.333 5.03 0.00 37.08 3.50
2990 3312 9.302345 CAGTTCCATATTATAGTGCGTATAAGG 57.698 37.037 5.03 2.19 37.08 2.69
2993 3315 8.683615 CCTCAGTTCCATATTATAGTGCGTATA 58.316 37.037 0.00 0.00 0.00 1.47
2994 3316 7.363880 CCCTCAGTTCCATATTATAGTGCGTAT 60.364 40.741 0.00 0.00 0.00 3.06
2995 3317 6.071560 CCCTCAGTTCCATATTATAGTGCGTA 60.072 42.308 0.00 0.00 0.00 4.42
2996 3318 5.279506 CCCTCAGTTCCATATTATAGTGCGT 60.280 44.000 0.00 0.00 0.00 5.24
2997 3319 5.047306 TCCCTCAGTTCCATATTATAGTGCG 60.047 44.000 0.00 0.00 0.00 5.34
2998 3320 6.014156 ACTCCCTCAGTTCCATATTATAGTGC 60.014 42.308 0.00 0.00 26.56 4.40
2999 3321 7.546250 ACTCCCTCAGTTCCATATTATAGTG 57.454 40.000 0.00 0.00 26.56 2.74
3000 3322 9.845214 ATTACTCCCTCAGTTCCATATTATAGT 57.155 33.333 0.00 0.00 36.43 2.12
3003 3325 9.845214 ACTATTACTCCCTCAGTTCCATATTAT 57.155 33.333 0.00 0.00 36.43 1.28
3005 3327 9.670442 TTACTATTACTCCCTCAGTTCCATATT 57.330 33.333 0.00 0.00 36.43 1.28
3006 3328 9.845214 ATTACTATTACTCCCTCAGTTCCATAT 57.155 33.333 0.00 0.00 36.43 1.78
3008 3330 9.091220 GTATTACTATTACTCCCTCAGTTCCAT 57.909 37.037 0.00 0.00 36.43 3.41
3009 3331 7.508296 GGTATTACTATTACTCCCTCAGTTCCA 59.492 40.741 0.00 0.00 36.43 3.53
3010 3332 7.729431 AGGTATTACTATTACTCCCTCAGTTCC 59.271 40.741 0.00 0.00 36.43 3.62
3011 3333 8.578151 CAGGTATTACTATTACTCCCTCAGTTC 58.422 40.741 0.00 0.00 36.43 3.01
3012 3334 8.287350 TCAGGTATTACTATTACTCCCTCAGTT 58.713 37.037 0.00 0.00 36.43 3.16
3013 3335 7.823635 TCAGGTATTACTATTACTCCCTCAGT 58.176 38.462 0.00 0.00 39.41 3.41
3014 3336 8.578151 GTTCAGGTATTACTATTACTCCCTCAG 58.422 40.741 0.00 0.00 0.00 3.35
3015 3337 8.063153 TGTTCAGGTATTACTATTACTCCCTCA 58.937 37.037 0.00 0.00 0.00 3.86
3016 3338 8.474710 TGTTCAGGTATTACTATTACTCCCTC 57.525 38.462 0.00 0.00 0.00 4.30
3017 3339 8.066247 ACTGTTCAGGTATTACTATTACTCCCT 58.934 37.037 4.82 0.00 0.00 4.20
3018 3340 8.247666 ACTGTTCAGGTATTACTATTACTCCC 57.752 38.462 4.82 0.00 0.00 4.30
3019 3341 9.134055 AGACTGTTCAGGTATTACTATTACTCC 57.866 37.037 4.82 0.00 0.00 3.85
3021 3343 9.924010 AGAGACTGTTCAGGTATTACTATTACT 57.076 33.333 4.82 0.00 0.00 2.24
3024 3346 8.908903 CAGAGAGACTGTTCAGGTATTACTATT 58.091 37.037 4.82 0.00 41.30 1.73
3025 3347 8.458573 CAGAGAGACTGTTCAGGTATTACTAT 57.541 38.462 4.82 0.00 41.30 2.12
3026 3348 7.867305 CAGAGAGACTGTTCAGGTATTACTA 57.133 40.000 4.82 0.00 41.30 1.82
3027 3349 6.767524 CAGAGAGACTGTTCAGGTATTACT 57.232 41.667 4.82 0.00 41.30 2.24
3061 3383 5.185635 CAGTCCTGATCCTTTTTGGCATTTA 59.814 40.000 0.00 0.00 35.26 1.40
3066 3388 1.203287 GCAGTCCTGATCCTTTTTGGC 59.797 52.381 0.00 0.00 35.26 4.52
3079 3401 3.600388 GCAAGTACTATTGTGCAGTCCT 58.400 45.455 11.53 0.00 36.97 3.85
3081 3403 3.334691 TGGCAAGTACTATTGTGCAGTC 58.665 45.455 16.86 3.20 38.78 3.51
3086 3408 6.741992 TTCTCAATGGCAAGTACTATTGTG 57.258 37.500 13.31 11.64 33.46 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.