Multiple sequence alignment - TraesCS3A01G452900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G452900 chr3A 100.000 3155 0 0 1 3155 690978351 690975197 0.000000e+00 5827.0
1 TraesCS3A01G452900 chr3A 84.173 556 63 12 1698 2233 691063668 691063118 1.680000e-142 516.0
2 TraesCS3A01G452900 chr3A 84.000 275 29 10 986 1249 691076862 691076592 1.880000e-62 250.0
3 TraesCS3A01G452900 chr3A 90.566 159 12 2 2864 3021 434948154 434948310 1.150000e-49 207.0
4 TraesCS3A01G452900 chr3A 85.047 214 11 8 2807 3020 554884458 554884266 6.900000e-47 198.0
5 TraesCS3A01G452900 chr3A 89.308 159 13 2 2864 3021 152227508 152227663 2.480000e-46 196.0
6 TraesCS3A01G452900 chr3A 88.679 159 15 2 2864 3021 746978538 746978694 1.160000e-44 191.0
7 TraesCS3A01G452900 chr3A 94.915 59 3 0 1247 1305 691063972 691063914 3.350000e-15 93.5
8 TraesCS3A01G452900 chr3B 86.316 1637 117 52 998 2584 736673294 736671715 0.000000e+00 1683.0
9 TraesCS3A01G452900 chr3B 89.330 403 38 3 184 586 736674308 736673911 4.700000e-138 501.0
10 TraesCS3A01G452900 chr3B 77.119 472 82 18 1708 2157 736665892 736665425 1.880000e-62 250.0
11 TraesCS3A01G452900 chr3B 86.842 228 25 5 584 810 736673884 736673661 1.880000e-62 250.0
12 TraesCS3A01G452900 chr3B 92.045 88 7 0 2596 2683 736668674 736668587 1.190000e-24 124.0
13 TraesCS3A01G452900 chr3B 74.204 314 57 18 31 324 620020108 620019799 3.330000e-20 110.0
14 TraesCS3A01G452900 chr3D 92.358 916 46 15 1695 2601 554398813 554397913 0.000000e+00 1282.0
15 TraesCS3A01G452900 chr3D 88.958 480 49 3 9 485 554401061 554400583 9.750000e-165 590.0
16 TraesCS3A01G452900 chr3D 84.229 577 36 27 860 1393 554400012 554399448 7.810000e-141 510.0
17 TraesCS3A01G452900 chr3D 77.801 473 77 19 1708 2157 554383480 554383013 1.870000e-67 267.0
18 TraesCS3A01G452900 chr3D 88.050 159 15 3 2864 3021 476234602 476234757 5.370000e-43 185.0
19 TraesCS3A01G452900 chr4D 85.358 321 15 7 868 1160 187475718 187476034 1.420000e-78 303.0
20 TraesCS3A01G452900 chr4A 91.195 159 11 3 2864 3021 119307305 119307461 2.470000e-51 213.0
21 TraesCS3A01G452900 chr4A 87.342 158 16 3 2864 3020 150817467 150817313 8.990000e-41 178.0
22 TraesCS3A01G452900 chr1A 91.139 158 11 3 2864 3020 471206829 471206984 8.870000e-51 211.0
23 TraesCS3A01G452900 chr1A 88.272 162 15 3 2865 3024 507955355 507955196 1.160000e-44 191.0
24 TraesCS3A01G452900 chr1A 83.645 214 17 11 2808 3021 504573516 504573711 5.370000e-43 185.0
25 TraesCS3A01G452900 chr1A 87.730 163 13 5 2864 3024 510700654 510700497 1.930000e-42 183.0
26 TraesCS3A01G452900 chr2A 84.722 216 12 11 2807 3021 247164769 247164964 2.480000e-46 196.0
27 TraesCS3A01G452900 chr2A 89.524 105 11 0 3051 3155 620215273 620215169 1.970000e-27 134.0
28 TraesCS3A01G452900 chr2A 88.525 61 2 3 2746 2806 738143269 738143324 5.650000e-08 69.4
29 TraesCS3A01G452900 chr5A 89.308 159 12 3 2864 3021 614030381 614030535 8.930000e-46 195.0
30 TraesCS3A01G452900 chr5A 91.379 58 0 3 2750 2807 617127750 617127802 1.210000e-09 75.0
31 TraesCS3A01G452900 chr5A 86.667 60 3 4 2746 2805 429122523 429122577 9.450000e-06 62.1
32 TraesCS3A01G452900 chr5A 90.196 51 0 3 2757 2807 577742484 577742529 9.450000e-06 62.1
33 TraesCS3A01G452900 chr7A 88.125 160 16 2 2865 3024 94172804 94172648 1.490000e-43 187.0
34 TraesCS3A01G452900 chr7A 91.379 58 0 3 2750 2807 201381415 201381467 1.210000e-09 75.0
35 TraesCS3A01G452900 chr5D 87.898 157 14 4 2864 3019 311053244 311053396 2.500000e-41 180.0
36 TraesCS3A01G452900 chr5D 87.342 158 17 2 2864 3020 5560905 5561060 8.990000e-41 178.0
37 TraesCS3A01G452900 chr5D 87.719 57 2 4 2749 2805 327532673 327532622 9.450000e-06 62.1
38 TraesCS3A01G452900 chr6A 91.379 58 0 3 2750 2807 164515715 164515663 1.210000e-09 75.0
39 TraesCS3A01G452900 chr7D 87.931 58 2 4 2749 2806 319944827 319944879 2.630000e-06 63.9
40 TraesCS3A01G452900 chr4B 100.000 29 0 0 2777 2805 48108755 48108727 2.000000e-03 54.7
41 TraesCS3A01G452900 chr6D 100.000 28 0 0 3022 3049 158370591 158370618 6.000000e-03 52.8
42 TraesCS3A01G452900 chr6D 100.000 28 0 0 3022 3049 418612785 418612812 6.000000e-03 52.8
43 TraesCS3A01G452900 chr2D 100.000 28 0 0 3022 3049 277085868 277085895 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G452900 chr3A 690975197 690978351 3154 True 5827.00 5827 100.0000 1 3155 1 chr3A.!!$R2 3154
1 TraesCS3A01G452900 chr3A 691063118 691063972 854 True 304.75 516 89.5440 1247 2233 2 chr3A.!!$R4 986
2 TraesCS3A01G452900 chr3B 736665425 736674308 8883 True 561.60 1683 86.3304 184 2683 5 chr3B.!!$R2 2499
3 TraesCS3A01G452900 chr3D 554397913 554401061 3148 True 794.00 1282 88.5150 9 2601 3 chr3D.!!$R2 2592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 1284 0.110104 AAGCAGAAGCAGGCAAGAGT 59.89 50.0 0.0 0.0 45.49 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2693 7277 0.107703 ATGGGCGTGTGGTATGTCTG 60.108 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.896923 ACGCCGTAACACCATTCCTA 59.103 50.000 0.00 0.00 0.00 2.94
41 42 3.769189 TCCACCTACCACTAGGATGAA 57.231 47.619 0.62 0.00 42.34 2.57
44 45 5.036916 TCCACCTACCACTAGGATGAAAAT 58.963 41.667 0.62 0.00 42.34 1.82
56 57 7.426456 CACTAGGATGAAAATGAAACGAAATCG 59.574 37.037 0.48 0.48 46.33 3.34
59 60 7.538575 AGGATGAAAATGAAACGAAATCGAAT 58.461 30.769 10.16 0.00 43.02 3.34
66 67 8.880768 AAATGAAACGAAATCGAATAGAACAG 57.119 30.769 10.16 0.00 43.02 3.16
70 71 5.587388 ACGAAATCGAATAGAACAGGGTA 57.413 39.130 10.16 0.00 43.02 3.69
71 72 5.589192 ACGAAATCGAATAGAACAGGGTAG 58.411 41.667 10.16 0.00 43.02 3.18
81 82 6.886178 ATAGAACAGGGTAGTACCACATTT 57.114 37.500 20.97 7.88 41.02 2.32
106 107 6.700960 TGTTTTCATATGTTTTGTGGAAGCAG 59.299 34.615 1.90 0.00 31.72 4.24
116 117 4.742438 TTGTGGAAGCAGAAACGAATAC 57.258 40.909 0.00 0.00 0.00 1.89
122 123 4.142881 GGAAGCAGAAACGAATACAGAACC 60.143 45.833 0.00 0.00 0.00 3.62
123 124 4.273148 AGCAGAAACGAATACAGAACCT 57.727 40.909 0.00 0.00 0.00 3.50
160 162 5.230942 AGAAACTACTGGAAACGATCACAG 58.769 41.667 0.00 0.00 34.42 3.66
167 169 2.798283 TGGAAACGATCACAGAACGAAC 59.202 45.455 3.72 0.00 32.39 3.95
174 176 0.596600 TCACAGAACGAACACGGAGC 60.597 55.000 0.00 0.00 0.00 4.70
176 178 2.049433 AGAACGAACACGGAGCGG 60.049 61.111 0.00 0.00 0.00 5.52
189 191 2.440796 AGCGGACATGGCAATGGG 60.441 61.111 5.94 0.00 38.19 4.00
195 197 3.908081 CATGGCAATGGGAGCGGC 61.908 66.667 0.00 0.00 0.00 6.53
212 214 1.369625 GGCTGTTGACCGGAACATAG 58.630 55.000 9.46 10.47 35.32 2.23
225 227 5.189145 ACCGGAACATAGAAACCTATTGAGT 59.811 40.000 9.46 0.00 0.00 3.41
226 228 6.113411 CCGGAACATAGAAACCTATTGAGTT 58.887 40.000 0.00 0.00 0.00 3.01
227 229 6.037172 CCGGAACATAGAAACCTATTGAGTTG 59.963 42.308 0.00 0.00 0.00 3.16
284 286 9.590451 AATCAATTGTTCACATGGCTATAAAAG 57.410 29.630 5.13 0.00 0.00 2.27
353 355 6.530120 ACTGGACAATGTTGTGTGATAGTAA 58.470 36.000 2.65 0.00 42.43 2.24
378 380 1.858910 TGGGCCTCATATGGGTCATTT 59.141 47.619 14.38 0.00 0.00 2.32
414 418 5.186021 TCATAGTTGTGTTGTTTGGTGGTTT 59.814 36.000 0.00 0.00 0.00 3.27
415 419 4.344359 AGTTGTGTTGTTTGGTGGTTTT 57.656 36.364 0.00 0.00 0.00 2.43
498 502 2.237143 GGCGATGGAGATGGATGGATAA 59.763 50.000 0.00 0.00 0.00 1.75
509 513 4.049546 TGGATGGATAACCTTTCGTACG 57.950 45.455 9.53 9.53 37.04 3.67
517 521 6.256975 TGGATAACCTTTCGTACGATGAAATG 59.743 38.462 20.27 10.02 33.16 2.32
523 527 3.733024 TCGTACGATGAAATGGTTTGC 57.267 42.857 15.28 0.00 36.41 3.68
525 529 2.173964 GTACGATGAAATGGTTTGCGC 58.826 47.619 0.00 0.00 36.41 6.09
531 535 1.862602 GAAATGGTTTGCGCGAGGGT 61.863 55.000 12.10 0.00 0.00 4.34
540 544 2.668212 CGCGAGGGTTTGCTCCAA 60.668 61.111 0.00 0.00 0.00 3.53
541 545 2.680913 CGCGAGGGTTTGCTCCAAG 61.681 63.158 0.00 0.00 0.00 3.61
542 546 2.982744 GCGAGGGTTTGCTCCAAGC 61.983 63.158 0.00 0.00 42.82 4.01
552 556 3.900446 GCTCCAAGCAAGCAAATGT 57.100 47.368 0.00 0.00 41.89 2.71
562 566 1.266718 CAAGCAAATGTGTGGCTACGT 59.733 47.619 0.00 0.00 36.76 3.57
602 635 2.577059 CCAGAAGGGCGTTCGCTA 59.423 61.111 16.40 0.00 40.49 4.26
688 723 8.514330 TTAATTTATTGCCCGAAAGTGTAGAT 57.486 30.769 0.00 0.00 0.00 1.98
689 724 6.619801 ATTTATTGCCCGAAAGTGTAGATC 57.380 37.500 0.00 0.00 0.00 2.75
696 731 2.186076 CGAAAGTGTAGATCAGGACGC 58.814 52.381 0.00 0.00 0.00 5.19
706 741 6.037172 GTGTAGATCAGGACGCAAATATTTGT 59.963 38.462 25.15 10.05 40.24 2.83
707 742 6.597672 TGTAGATCAGGACGCAAATATTTGTT 59.402 34.615 25.15 14.98 40.24 2.83
710 745 7.378181 AGATCAGGACGCAAATATTTGTTTTT 58.622 30.769 25.15 10.35 40.24 1.94
745 780 9.477484 CATACTTATCGCCTACCATATTTATCC 57.523 37.037 0.00 0.00 0.00 2.59
746 781 7.490657 ACTTATCGCCTACCATATTTATCCA 57.509 36.000 0.00 0.00 0.00 3.41
780 816 8.703743 TGATTAGGATTGTATTGGGATTTTTGG 58.296 33.333 0.00 0.00 0.00 3.28
802 838 4.495422 GCAGGTGTATCCCGTATAATCTG 58.505 47.826 0.00 0.00 36.75 2.90
869 1161 6.639632 TCTATTAATATATACCCCGACGGC 57.360 41.667 8.86 0.00 33.26 5.68
899 1191 3.314331 CACTCACCACCGCTCCCT 61.314 66.667 0.00 0.00 0.00 4.20
900 1192 2.997897 ACTCACCACCGCTCCCTC 60.998 66.667 0.00 0.00 0.00 4.30
901 1193 3.775654 CTCACCACCGCTCCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
904 1196 4.371417 ACCACCGCTCCCTCCGTA 62.371 66.667 0.00 0.00 0.00 4.02
905 1197 3.528370 CCACCGCTCCCTCCGTAG 61.528 72.222 0.00 0.00 0.00 3.51
906 1198 4.208686 CACCGCTCCCTCCGTAGC 62.209 72.222 0.00 0.00 35.33 3.58
908 1200 3.597728 CCGCTCCCTCCGTAGCTC 61.598 72.222 0.00 0.00 36.56 4.09
913 1205 3.597728 CCCTCCGTAGCTCGCTCC 61.598 72.222 0.00 0.00 38.35 4.70
919 1211 2.747989 CTCCGTAGCTCGCTCCATATAA 59.252 50.000 0.00 0.00 38.35 0.98
922 1214 4.219944 TCCGTAGCTCGCTCCATATAAATT 59.780 41.667 0.00 0.00 38.35 1.82
924 1216 4.327357 CGTAGCTCGCTCCATATAAATTGG 59.673 45.833 0.00 0.00 35.45 3.16
932 1224 4.338879 CTCCATATAAATTGGGAGGCAGG 58.661 47.826 0.00 0.00 42.55 4.85
933 1225 3.986817 TCCATATAAATTGGGAGGCAGGA 59.013 43.478 0.00 0.00 34.85 3.86
934 1226 4.607584 TCCATATAAATTGGGAGGCAGGAT 59.392 41.667 0.00 0.00 34.85 3.24
950 1243 2.235898 CAGGATAGCAGATAGGGGAAGC 59.764 54.545 0.00 0.00 0.00 3.86
953 1246 2.775490 TAGCAGATAGGGGAAGCAGA 57.225 50.000 0.00 0.00 0.00 4.26
954 1247 1.422531 AGCAGATAGGGGAAGCAGAG 58.577 55.000 0.00 0.00 0.00 3.35
955 1248 0.250252 GCAGATAGGGGAAGCAGAGC 60.250 60.000 0.00 0.00 0.00 4.09
979 1281 0.522180 CAGAAGCAGAAGCAGGCAAG 59.478 55.000 0.00 0.00 45.49 4.01
982 1284 0.110104 AAGCAGAAGCAGGCAAGAGT 59.890 50.000 0.00 0.00 45.49 3.24
994 1296 0.244994 GCAAGAGTCGAGCAGGAAGA 59.755 55.000 5.17 0.00 0.00 2.87
1183 1523 1.278238 CTGCTCCGTCGTTGATTACC 58.722 55.000 0.00 0.00 0.00 2.85
1197 1537 2.429610 TGATTACCAGTAGTTCCTCGCC 59.570 50.000 0.00 0.00 0.00 5.54
1212 1552 2.543802 CGCCGAGATCCAGACGCTA 61.544 63.158 0.00 0.00 0.00 4.26
1217 1557 3.458189 CCGAGATCCAGACGCTAATTTT 58.542 45.455 0.00 0.00 0.00 1.82
1218 1558 3.246226 CCGAGATCCAGACGCTAATTTTG 59.754 47.826 0.00 0.00 0.00 2.44
1305 1646 4.566987 AGTTGTCTTCGGTAACCATTCTC 58.433 43.478 0.00 0.00 0.00 2.87
1308 1649 4.755411 TGTCTTCGGTAACCATTCTCATC 58.245 43.478 0.00 0.00 0.00 2.92
1310 1651 4.806247 GTCTTCGGTAACCATTCTCATCTG 59.194 45.833 0.00 0.00 0.00 2.90
1314 1655 6.724893 TCGGTAACCATTCTCATCTGATTA 57.275 37.500 0.00 0.00 0.00 1.75
1345 1724 3.500448 TCTGGTTTGGTAGATGCACAA 57.500 42.857 0.00 0.00 0.00 3.33
1346 1725 4.032960 TCTGGTTTGGTAGATGCACAAT 57.967 40.909 0.00 0.00 0.00 2.71
1347 1726 4.009675 TCTGGTTTGGTAGATGCACAATC 58.990 43.478 0.00 0.00 35.29 2.67
1348 1727 3.758023 CTGGTTTGGTAGATGCACAATCA 59.242 43.478 0.00 0.00 37.81 2.57
1349 1728 3.758023 TGGTTTGGTAGATGCACAATCAG 59.242 43.478 0.00 0.00 37.81 2.90
1350 1729 3.758554 GGTTTGGTAGATGCACAATCAGT 59.241 43.478 0.00 0.00 37.81 3.41
1351 1730 4.142600 GGTTTGGTAGATGCACAATCAGTC 60.143 45.833 0.00 0.00 37.81 3.51
1353 1732 4.128925 TGGTAGATGCACAATCAGTCTC 57.871 45.455 0.00 0.00 37.81 3.36
1354 1733 3.515104 TGGTAGATGCACAATCAGTCTCA 59.485 43.478 0.00 0.00 37.81 3.27
1355 1734 3.868077 GGTAGATGCACAATCAGTCTCAC 59.132 47.826 0.00 0.00 37.81 3.51
1356 1735 3.977134 AGATGCACAATCAGTCTCACT 57.023 42.857 0.00 0.00 37.81 3.41
1357 1736 5.163509 GGTAGATGCACAATCAGTCTCACTA 60.164 44.000 0.00 0.00 37.81 2.74
1359 1738 3.599730 TGCACAATCAGTCTCACTAGG 57.400 47.619 0.00 0.00 0.00 3.02
1360 1739 3.165071 TGCACAATCAGTCTCACTAGGA 58.835 45.455 0.00 0.00 0.00 2.94
1361 1740 3.771479 TGCACAATCAGTCTCACTAGGAT 59.229 43.478 0.00 0.00 0.00 3.24
1363 1742 5.181748 GCACAATCAGTCTCACTAGGATTT 58.818 41.667 0.00 0.00 0.00 2.17
1364 1743 5.645497 GCACAATCAGTCTCACTAGGATTTT 59.355 40.000 0.00 0.00 0.00 1.82
1365 1744 6.818644 GCACAATCAGTCTCACTAGGATTTTA 59.181 38.462 0.00 0.00 0.00 1.52
1377 1758 9.239002 CTCACTAGGATTTTAGATTTACTGACG 57.761 37.037 0.00 0.00 0.00 4.35
1408 1789 2.253758 CCAACACACGGCTCACTGG 61.254 63.158 0.00 0.00 0.00 4.00
1424 1805 4.556233 TCACTGGAACTGTATCTTGTTCG 58.444 43.478 0.00 0.00 42.28 3.95
1425 1806 3.123621 CACTGGAACTGTATCTTGTTCGC 59.876 47.826 0.00 0.00 42.28 4.70
1433 1974 5.169295 ACTGTATCTTGTTCGCCTCTTTAC 58.831 41.667 0.00 0.00 0.00 2.01
1472 2013 1.867233 CCGCCGATCTATCCAAACTTG 59.133 52.381 0.00 0.00 0.00 3.16
1526 2067 9.984190 GGAAAAGGTAGGAGTAGAATATACTTG 57.016 37.037 0.00 0.00 0.00 3.16
1571 2113 0.811616 GAGCGCGAGGATTTGGTCAT 60.812 55.000 12.10 0.00 0.00 3.06
1572 2114 0.464036 AGCGCGAGGATTTGGTCATA 59.536 50.000 12.10 0.00 0.00 2.15
1574 2116 1.003866 GCGCGAGGATTTGGTCATAAC 60.004 52.381 12.10 0.00 0.00 1.89
1575 2117 2.276201 CGCGAGGATTTGGTCATAACA 58.724 47.619 0.00 0.00 0.00 2.41
1602 2149 0.813210 GCAAGATTCCGAGGAGCAGG 60.813 60.000 0.00 0.00 0.00 4.85
1608 2155 1.030488 TTCCGAGGAGCAGGTCTACG 61.030 60.000 0.00 5.89 0.00 3.51
1624 2171 4.968788 GGTCTACGAGCAATTAACTAGTCG 59.031 45.833 0.00 0.00 0.00 4.18
1635 2182 2.645730 AACTAGTCGAGCAGAGCTTG 57.354 50.000 0.00 0.00 39.88 4.01
1661 2208 4.653806 TTTTTGTTCTTGTTTTGCGTGG 57.346 36.364 0.00 0.00 0.00 4.94
1866 2615 1.141657 GAGCTGGTCATCAAGCCCATA 59.858 52.381 1.28 0.00 0.00 2.74
2199 2959 4.168760 GTTCGATTTGCTTGCTTGCTTAT 58.831 39.130 0.00 0.00 0.00 1.73
2247 3007 3.935828 TCGCGATGATGGAATAAACAACA 59.064 39.130 3.71 0.00 0.00 3.33
2276 3036 2.165234 GAGGAAGCTTGGAATTCTTGGC 59.835 50.000 2.10 7.12 0.00 4.52
2279 3039 1.168714 AGCTTGGAATTCTTGGCGTC 58.831 50.000 5.23 0.00 0.00 5.19
2281 3041 1.156736 CTTGGAATTCTTGGCGTCGT 58.843 50.000 5.23 0.00 0.00 4.34
2282 3042 1.535462 CTTGGAATTCTTGGCGTCGTT 59.465 47.619 5.23 0.00 0.00 3.85
2283 3043 0.871722 TGGAATTCTTGGCGTCGTTG 59.128 50.000 5.23 0.00 0.00 4.10
2284 3044 1.153353 GGAATTCTTGGCGTCGTTGA 58.847 50.000 5.23 0.00 0.00 3.18
2287 3047 2.093306 ATTCTTGGCGTCGTTGATGA 57.907 45.000 0.00 0.00 0.00 2.92
2300 3063 4.853196 GTCGTTGATGATGTTGAATGTTGG 59.147 41.667 0.00 0.00 0.00 3.77
2354 3117 4.939052 TTATCCGGTTTTTGGCTTGAAA 57.061 36.364 0.00 0.00 0.00 2.69
2364 3127 6.094186 GGTTTTTGGCTTGAAATTTGTTGGTA 59.906 34.615 0.00 0.00 0.00 3.25
2365 3128 6.917217 TTTTGGCTTGAAATTTGTTGGTAG 57.083 33.333 0.00 0.00 0.00 3.18
2366 3129 5.606348 TTGGCTTGAAATTTGTTGGTAGT 57.394 34.783 0.00 0.00 0.00 2.73
2367 3130 5.606348 TGGCTTGAAATTTGTTGGTAGTT 57.394 34.783 0.00 0.00 0.00 2.24
2378 3141 2.106166 TGTTGGTAGTTCGGCCCTTAAA 59.894 45.455 0.00 0.00 0.00 1.52
2395 3158 6.458210 CCCTTAAATCTTTGTCAGCACATTT 58.542 36.000 0.00 0.00 30.55 2.32
2411 3174 1.091771 ATTTGGTGGCGCGAGATCTG 61.092 55.000 12.10 0.00 0.00 2.90
2413 3176 4.521062 GGTGGCGCGAGATCTGCT 62.521 66.667 12.10 0.00 0.00 4.24
2434 3202 0.657840 AATTGATTACGCGCCTCTGC 59.342 50.000 5.73 0.00 0.00 4.26
2439 3207 2.521958 ATTACGCGCCTCTGCCAACT 62.522 55.000 5.73 0.00 0.00 3.16
2449 3217 2.663520 TGCCAACTACACCGTGCG 60.664 61.111 0.00 0.00 0.00 5.34
2450 3218 2.663852 GCCAACTACACCGTGCGT 60.664 61.111 0.00 0.00 0.00 5.24
2493 3265 3.064324 GAGCTGGGCAATGGCGTT 61.064 61.111 0.00 0.00 42.47 4.84
2502 3274 1.731613 CAATGGCGTTGCAGCTGTG 60.732 57.895 16.64 4.34 37.29 3.66
2560 3332 2.356313 CCACGTTCAGAGCGCACT 60.356 61.111 11.47 5.59 0.00 4.40
2675 6476 3.827898 CACGAGGAGAGTCGGGGC 61.828 72.222 0.00 0.00 44.53 5.80
2680 6481 2.436824 GGAGAGTCGGGGCTTTGC 60.437 66.667 0.00 0.00 0.00 3.68
2683 6484 1.893919 GAGAGTCGGGGCTTTGCTCT 61.894 60.000 0.00 0.00 39.00 4.09
2684 6485 1.003233 GAGTCGGGGCTTTGCTCTT 60.003 57.895 0.00 0.00 0.00 2.85
2685 6486 1.301677 GAGTCGGGGCTTTGCTCTTG 61.302 60.000 0.00 0.00 0.00 3.02
2690 7274 0.600057 GGGGCTTTGCTCTTGTTCAG 59.400 55.000 0.00 0.00 0.00 3.02
2692 7276 0.386478 GGCTTTGCTCTTGTTCAGCG 60.386 55.000 0.00 0.00 40.01 5.18
2693 7277 1.000736 GCTTTGCTCTTGTTCAGCGC 61.001 55.000 0.00 0.00 40.01 5.92
2702 7286 1.394917 CTTGTTCAGCGCAGACATACC 59.605 52.381 11.47 0.00 0.00 2.73
2713 7297 1.138069 CAGACATACCACACGCCCATA 59.862 52.381 0.00 0.00 0.00 2.74
2715 7299 0.179056 ACATACCACACGCCCATAGC 60.179 55.000 0.00 0.00 38.52 2.97
2737 7321 1.153127 AAAAACCGGACCGCTGTCA 60.153 52.632 9.46 0.00 43.65 3.58
2747 7331 2.320587 CCGCTGTCACTGCTGGTTC 61.321 63.158 5.02 0.00 0.00 3.62
2751 7335 1.227943 TGTCACTGCTGGTTCAGGC 60.228 57.895 0.00 0.00 38.36 4.85
2752 7336 1.968540 GTCACTGCTGGTTCAGGCC 60.969 63.158 0.00 0.00 38.36 5.19
2754 7338 1.673665 CACTGCTGGTTCAGGCCTC 60.674 63.158 0.00 0.00 38.36 4.70
2756 7340 2.530151 TGCTGGTTCAGGCCTCCT 60.530 61.111 0.00 0.00 31.21 3.69
2758 7342 1.075659 GCTGGTTCAGGCCTCCTTT 59.924 57.895 0.00 0.00 31.21 3.11
2759 7343 1.246737 GCTGGTTCAGGCCTCCTTTG 61.247 60.000 0.00 0.00 31.21 2.77
2762 7346 0.178961 GGTTCAGGCCTCCTTTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
2766 7350 1.777878 TCAGGCCTCCTTTGGTTTGTA 59.222 47.619 0.00 0.00 0.00 2.41
2767 7351 2.378547 TCAGGCCTCCTTTGGTTTGTAT 59.621 45.455 0.00 0.00 0.00 2.29
2769 7353 3.947834 CAGGCCTCCTTTGGTTTGTATAG 59.052 47.826 0.00 0.00 0.00 1.31
2770 7354 3.053619 AGGCCTCCTTTGGTTTGTATAGG 60.054 47.826 0.00 0.00 0.00 2.57
2771 7355 3.053917 GGCCTCCTTTGGTTTGTATAGGA 60.054 47.826 0.00 0.00 34.07 2.94
2772 7356 4.569015 GGCCTCCTTTGGTTTGTATAGGAA 60.569 45.833 0.00 0.00 34.77 3.36
2776 7360 6.038271 CCTCCTTTGGTTTGTATAGGAATTCG 59.962 42.308 0.00 0.00 34.77 3.34
2781 7365 7.513371 TTGGTTTGTATAGGAATTCGTTTGT 57.487 32.000 5.89 0.00 0.00 2.83
2782 7366 8.618702 TTGGTTTGTATAGGAATTCGTTTGTA 57.381 30.769 5.89 0.00 0.00 2.41
2785 7369 7.550196 GGTTTGTATAGGAATTCGTTTGTAGGA 59.450 37.037 5.89 0.00 0.00 2.94
2786 7370 8.938906 GTTTGTATAGGAATTCGTTTGTAGGAA 58.061 33.333 5.89 0.00 33.16 3.36
2788 7372 9.675464 TTGTATAGGAATTCGTTTGTAGGAATT 57.325 29.630 5.89 5.74 46.16 2.17
2809 7393 9.336171 GGAATTCTATAGGATATGATTTGCTCC 57.664 37.037 5.23 0.00 0.00 4.70
2813 7397 9.730705 TTCTATAGGATATGATTTGCTCCTTTG 57.269 33.333 0.00 0.00 38.95 2.77
2816 7400 5.522641 AGGATATGATTTGCTCCTTTGGTT 58.477 37.500 0.00 0.00 34.42 3.67
2817 7401 5.960202 AGGATATGATTTGCTCCTTTGGTTT 59.040 36.000 0.00 0.00 34.42 3.27
2818 7402 6.044682 GGATATGATTTGCTCCTTTGGTTTG 58.955 40.000 0.00 0.00 0.00 2.93
2819 7403 4.961438 ATGATTTGCTCCTTTGGTTTGT 57.039 36.364 0.00 0.00 0.00 2.83
2822 7406 7.716799 ATGATTTGCTCCTTTGGTTTGTATA 57.283 32.000 0.00 0.00 0.00 1.47
2824 7408 5.975693 TTTGCTCCTTTGGTTTGTATAGG 57.024 39.130 0.00 0.00 0.00 2.57
2825 7409 4.919774 TGCTCCTTTGGTTTGTATAGGA 57.080 40.909 0.00 0.00 34.07 2.94
2827 7411 5.826643 TGCTCCTTTGGTTTGTATAGGAAT 58.173 37.500 0.00 0.00 34.77 3.01
2828 7412 6.252995 TGCTCCTTTGGTTTGTATAGGAATT 58.747 36.000 0.00 0.00 34.77 2.17
2829 7413 6.723977 TGCTCCTTTGGTTTGTATAGGAATTT 59.276 34.615 0.00 0.00 34.77 1.82
2830 7414 7.035612 GCTCCTTTGGTTTGTATAGGAATTTG 58.964 38.462 0.00 0.00 34.77 2.32
2831 7415 7.309805 GCTCCTTTGGTTTGTATAGGAATTTGT 60.310 37.037 0.00 0.00 34.77 2.83
2849 7433 9.508642 GGAATTTGTTCCTAGGAATTCTATAGG 57.491 37.037 26.74 21.82 38.15 2.57
2905 8449 6.682423 ATTTCTTTGAAGCCCTTTTGTTTG 57.318 33.333 0.00 0.00 0.00 2.93
2906 8450 3.530535 TCTTTGAAGCCCTTTTGTTTGC 58.469 40.909 0.00 0.00 0.00 3.68
2911 8455 1.494960 AGCCCTTTTGTTTGCAGGAA 58.505 45.000 0.00 0.00 0.00 3.36
2913 8457 3.238597 AGCCCTTTTGTTTGCAGGAATA 58.761 40.909 0.00 0.00 0.00 1.75
2914 8458 3.259123 AGCCCTTTTGTTTGCAGGAATAG 59.741 43.478 0.00 0.00 0.00 1.73
2915 8459 3.258123 GCCCTTTTGTTTGCAGGAATAGA 59.742 43.478 0.00 0.00 0.00 1.98
2917 8461 5.569428 GCCCTTTTGTTTGCAGGAATAGATT 60.569 40.000 0.00 0.00 0.00 2.40
2919 8463 6.591448 CCCTTTTGTTTGCAGGAATAGATTTC 59.409 38.462 0.00 0.00 0.00 2.17
2950 8494 9.883142 CCTATGTAGGATAGAAATCAATCCTTC 57.117 37.037 9.03 5.31 46.63 3.46
2954 8498 6.240549 AGGATAGAAATCAATCCTTCACGT 57.759 37.500 0.00 0.00 40.39 4.49
2955 8499 6.653989 AGGATAGAAATCAATCCTTCACGTT 58.346 36.000 0.00 0.00 40.39 3.99
2956 8500 7.112779 AGGATAGAAATCAATCCTTCACGTTT 58.887 34.615 0.00 0.00 40.39 3.60
2957 8501 7.611855 AGGATAGAAATCAATCCTTCACGTTTT 59.388 33.333 0.00 0.00 40.39 2.43
2958 8502 7.698130 GGATAGAAATCAATCCTTCACGTTTTG 59.302 37.037 0.00 0.00 33.41 2.44
2969 8513 4.803098 TTCACGTTTTGAAGGGGAAAAA 57.197 36.364 0.00 0.00 39.45 1.94
2990 8534 7.396540 AAAAACATTAGGCTAGACTCAATGG 57.603 36.000 21.71 6.84 32.20 3.16
2992 8536 5.957771 ACATTAGGCTAGACTCAATGGAA 57.042 39.130 21.71 5.90 32.20 3.53
2993 8537 6.313519 ACATTAGGCTAGACTCAATGGAAA 57.686 37.500 21.71 5.31 32.20 3.13
2994 8538 6.721318 ACATTAGGCTAGACTCAATGGAAAA 58.279 36.000 21.71 4.71 32.20 2.29
2995 8539 7.175104 ACATTAGGCTAGACTCAATGGAAAAA 58.825 34.615 21.71 4.12 32.20 1.94
3029 8573 9.986157 ATTCTATGCACCAAATGATATAGGAAT 57.014 29.630 0.00 0.00 32.22 3.01
3030 8574 9.812347 TTCTATGCACCAAATGATATAGGAATT 57.188 29.630 0.00 0.00 32.22 2.17
3032 8576 9.234827 CTATGCACCAAATGATATAGGAATTGA 57.765 33.333 0.00 0.00 0.00 2.57
3033 8577 7.275888 TGCACCAAATGATATAGGAATTGAC 57.724 36.000 0.00 0.00 0.00 3.18
3034 8578 6.832900 TGCACCAAATGATATAGGAATTGACA 59.167 34.615 0.00 0.00 0.00 3.58
3035 8579 7.506599 TGCACCAAATGATATAGGAATTGACAT 59.493 33.333 0.00 0.00 0.00 3.06
3036 8580 7.811236 GCACCAAATGATATAGGAATTGACATG 59.189 37.037 0.00 0.00 0.00 3.21
3037 8581 7.811236 CACCAAATGATATAGGAATTGACATGC 59.189 37.037 0.00 0.00 0.00 4.06
3038 8582 7.506599 ACCAAATGATATAGGAATTGACATGCA 59.493 33.333 0.00 0.00 0.00 3.96
3039 8583 8.528643 CCAAATGATATAGGAATTGACATGCAT 58.471 33.333 0.00 0.00 0.00 3.96
3040 8584 9.353999 CAAATGATATAGGAATTGACATGCATG 57.646 33.333 25.09 25.09 0.00 4.06
3051 8595 1.676746 ACATGCATGTCATCTCAGGC 58.323 50.000 26.61 0.00 43.93 4.85
3052 8596 0.952280 CATGCATGTCATCTCAGGCC 59.048 55.000 18.91 0.00 43.18 5.19
3053 8597 0.844660 ATGCATGTCATCTCAGGCCT 59.155 50.000 0.00 0.00 43.18 5.19
3055 8599 0.469070 GCATGTCATCTCAGGCCTCT 59.531 55.000 0.00 0.00 38.87 3.69
3056 8600 1.134159 GCATGTCATCTCAGGCCTCTT 60.134 52.381 0.00 0.00 38.87 2.85
3057 8601 2.683152 GCATGTCATCTCAGGCCTCTTT 60.683 50.000 0.00 0.00 38.87 2.52
3058 8602 3.618351 CATGTCATCTCAGGCCTCTTTT 58.382 45.455 0.00 0.00 0.00 2.27
3059 8603 3.063510 TGTCATCTCAGGCCTCTTTTG 57.936 47.619 0.00 0.00 0.00 2.44
3060 8604 2.290514 TGTCATCTCAGGCCTCTTTTGG 60.291 50.000 0.00 0.00 0.00 3.28
3062 8606 2.376518 TCATCTCAGGCCTCTTTTGGTT 59.623 45.455 0.00 0.00 0.00 3.67
3063 8607 3.160269 CATCTCAGGCCTCTTTTGGTTT 58.840 45.455 0.00 0.00 0.00 3.27
3065 8609 4.447138 TCTCAGGCCTCTTTTGGTTTAA 57.553 40.909 0.00 0.00 0.00 1.52
3067 8611 5.205056 TCTCAGGCCTCTTTTGGTTTAAAA 58.795 37.500 0.00 0.00 36.82 1.52
3130 8674 8.934697 AGAATTTTTCCTTTAAAGCCCTTTAGT 58.065 29.630 9.86 0.00 36.52 2.24
3131 8675 9.555727 GAATTTTTCCTTTAAAGCCCTTTAGTT 57.444 29.630 9.86 0.00 36.52 2.24
3132 8676 9.555727 AATTTTTCCTTTAAAGCCCTTTAGTTC 57.444 29.630 9.86 0.00 36.52 3.01
3133 8677 7.663043 TTTTCCTTTAAAGCCCTTTAGTTCA 57.337 32.000 9.86 0.00 36.52 3.18
3134 8678 6.644248 TTCCTTTAAAGCCCTTTAGTTCAC 57.356 37.500 9.86 0.00 36.52 3.18
3135 8679 5.697067 TCCTTTAAAGCCCTTTAGTTCACA 58.303 37.500 9.86 0.00 36.52 3.58
3136 8680 5.768164 TCCTTTAAAGCCCTTTAGTTCACAG 59.232 40.000 9.86 0.00 36.52 3.66
3137 8681 5.048013 CCTTTAAAGCCCTTTAGTTCACAGG 60.048 44.000 9.86 0.00 36.52 4.00
3139 8683 3.876309 AAGCCCTTTAGTTCACAGGAA 57.124 42.857 0.00 0.00 0.00 3.36
3141 8685 6.257552 TAAAGCCCTTTAGTTCACAGGAACG 61.258 44.000 2.29 0.00 43.95 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.390735 AGGAATGGTGTTACGGCGTC 60.391 55.000 19.21 3.14 0.00 5.19
1 2 0.896923 TAGGAATGGTGTTACGGCGT 59.103 50.000 19.64 19.64 0.00 5.68
2 3 2.132762 GATAGGAATGGTGTTACGGCG 58.867 52.381 4.80 4.80 0.00 6.46
3 4 2.158871 TGGATAGGAATGGTGTTACGGC 60.159 50.000 0.00 0.00 0.00 5.68
4 5 3.463944 GTGGATAGGAATGGTGTTACGG 58.536 50.000 0.00 0.00 0.00 4.02
5 6 3.134081 AGGTGGATAGGAATGGTGTTACG 59.866 47.826 0.00 0.00 0.00 3.18
6 7 4.772886 AGGTGGATAGGAATGGTGTTAC 57.227 45.455 0.00 0.00 0.00 2.50
7 8 4.657039 GGTAGGTGGATAGGAATGGTGTTA 59.343 45.833 0.00 0.00 0.00 2.41
14 15 4.422592 TCCTAGTGGTAGGTGGATAGGAAT 59.577 45.833 0.00 0.00 45.75 3.01
20 21 3.993658 TCATCCTAGTGGTAGGTGGAT 57.006 47.619 0.00 0.00 45.75 3.41
41 42 7.962918 CCTGTTCTATTCGATTTCGTTTCATTT 59.037 33.333 0.00 0.00 40.80 2.32
44 45 5.350365 CCCTGTTCTATTCGATTTCGTTTCA 59.650 40.000 0.00 0.00 40.80 2.69
56 57 5.927281 TGTGGTACTACCCTGTTCTATTC 57.073 43.478 6.93 0.00 37.50 1.75
59 60 5.544948 ACAAATGTGGTACTACCCTGTTCTA 59.455 40.000 6.93 0.00 37.50 2.10
66 67 6.584185 ATGAAAACAAATGTGGTACTACCC 57.416 37.500 6.93 0.00 37.50 3.69
81 82 6.577103 TGCTTCCACAAAACATATGAAAACA 58.423 32.000 10.38 0.00 0.00 2.83
97 98 3.994392 TCTGTATTCGTTTCTGCTTCCAC 59.006 43.478 0.00 0.00 0.00 4.02
106 107 8.073768 TCAATTTTGAGGTTCTGTATTCGTTTC 58.926 33.333 0.00 0.00 32.50 2.78
136 137 6.208007 TCTGTGATCGTTTCCAGTAGTTTCTA 59.792 38.462 0.00 0.00 0.00 2.10
160 162 2.049802 TCCGCTCCGTGTTCGTTC 60.050 61.111 0.00 0.00 35.01 3.95
167 169 4.758251 TGCCATGTCCGCTCCGTG 62.758 66.667 0.00 0.00 0.00 4.94
174 176 2.484062 GCTCCCATTGCCATGTCCG 61.484 63.158 0.00 0.00 0.00 4.79
176 178 2.484062 CCGCTCCCATTGCCATGTC 61.484 63.158 0.00 0.00 0.00 3.06
195 197 3.435671 GGTTTCTATGTTCCGGTCAACAG 59.564 47.826 13.49 10.04 39.63 3.16
317 319 7.668886 ACAACATTGTCCAGTACTACTACTACT 59.331 37.037 0.00 0.00 36.50 2.57
353 355 1.645919 ACCCATATGAGGCCCAACTTT 59.354 47.619 3.65 0.00 0.00 2.66
378 380 4.821260 ACACAACTATGACACATTGAGCAA 59.179 37.500 0.00 0.00 0.00 3.91
414 418 6.154877 ACATGTGGATTTAGATCATTTGCCAA 59.845 34.615 0.00 0.00 33.77 4.52
415 419 5.657745 ACATGTGGATTTAGATCATTTGCCA 59.342 36.000 0.00 0.00 33.77 4.92
498 502 3.934068 ACCATTTCATCGTACGAAAGGT 58.066 40.909 23.56 18.75 35.91 3.50
509 513 1.538276 CTCGCGCAAACCATTTCATC 58.462 50.000 8.75 0.00 0.00 2.92
517 521 2.050442 CAAACCCTCGCGCAAACC 60.050 61.111 8.75 0.00 0.00 3.27
523 527 2.668212 TTGGAGCAAACCCTCGCG 60.668 61.111 0.00 0.00 32.57 5.87
525 529 3.267974 GCTTGGAGCAAACCCTCG 58.732 61.111 0.00 0.00 41.89 4.63
539 543 0.754472 AGCCACACATTTGCTTGCTT 59.246 45.000 0.00 0.00 29.17 3.91
540 544 1.270550 GTAGCCACACATTTGCTTGCT 59.729 47.619 0.00 0.00 36.57 3.91
541 545 1.701704 GTAGCCACACATTTGCTTGC 58.298 50.000 0.00 0.00 36.57 4.01
542 546 1.266718 ACGTAGCCACACATTTGCTTG 59.733 47.619 0.00 0.00 36.57 4.01
550 554 1.284715 CGTCAGACGTAGCCACACA 59.715 57.895 15.21 0.00 36.74 3.72
562 566 0.824595 TCGAGGTTTCCCACGTCAGA 60.825 55.000 0.00 0.00 44.14 3.27
602 635 3.736433 CGATCAGAAATCTCGCTCAACCT 60.736 47.826 0.00 0.00 0.00 3.50
614 649 0.108186 TGTGGCGAGCGATCAGAAAT 60.108 50.000 0.00 0.00 0.00 2.17
654 689 8.528044 TTCGGGCAATAAATTAATAAAGGAGT 57.472 30.769 0.00 0.00 0.00 3.85
655 690 9.463443 CTTTCGGGCAATAAATTAATAAAGGAG 57.537 33.333 0.00 0.00 0.00 3.69
656 691 8.973182 ACTTTCGGGCAATAAATTAATAAAGGA 58.027 29.630 0.00 0.00 0.00 3.36
657 692 9.030301 CACTTTCGGGCAATAAATTAATAAAGG 57.970 33.333 0.00 0.00 0.00 3.11
664 699 7.771361 TGATCTACACTTTCGGGCAATAAATTA 59.229 33.333 0.00 0.00 0.00 1.40
665 700 6.601613 TGATCTACACTTTCGGGCAATAAATT 59.398 34.615 0.00 0.00 0.00 1.82
666 701 6.119536 TGATCTACACTTTCGGGCAATAAAT 58.880 36.000 0.00 0.00 0.00 1.40
710 745 6.764560 GGTAGGCGATAAGTATGAAAAGGAAA 59.235 38.462 0.00 0.00 0.00 3.13
769 804 2.685106 TACACCTGCCAAAAATCCCA 57.315 45.000 0.00 0.00 0.00 4.37
852 888 0.174162 GCGCCGTCGGGGTATATATT 59.826 55.000 26.94 0.00 37.97 1.28
855 891 3.688159 GGCGCCGTCGGGGTATAT 61.688 66.667 26.94 0.00 37.97 0.86
869 1161 4.767255 GAGTGCTGACCTGGGGCG 62.767 72.222 0.00 0.00 0.00 6.13
899 1191 2.484742 TATATGGAGCGAGCTACGGA 57.515 50.000 2.56 0.00 42.83 4.69
900 1192 3.570926 TTTATATGGAGCGAGCTACGG 57.429 47.619 2.56 0.00 42.83 4.02
901 1193 4.327357 CCAATTTATATGGAGCGAGCTACG 59.673 45.833 2.56 0.00 40.56 3.51
902 1194 4.631813 CCCAATTTATATGGAGCGAGCTAC 59.368 45.833 0.00 0.00 40.56 3.58
903 1195 4.530553 TCCCAATTTATATGGAGCGAGCTA 59.469 41.667 0.00 0.00 40.56 3.32
904 1196 3.327757 TCCCAATTTATATGGAGCGAGCT 59.672 43.478 0.00 0.00 40.56 4.09
905 1197 3.674997 TCCCAATTTATATGGAGCGAGC 58.325 45.455 0.00 0.00 40.56 5.03
906 1198 4.256920 CCTCCCAATTTATATGGAGCGAG 58.743 47.826 0.00 0.00 42.50 5.03
908 1200 2.749621 GCCTCCCAATTTATATGGAGCG 59.250 50.000 0.00 0.00 42.50 5.03
913 1205 5.591877 GCTATCCTGCCTCCCAATTTATATG 59.408 44.000 0.00 0.00 0.00 1.78
919 1211 1.144503 CTGCTATCCTGCCTCCCAATT 59.855 52.381 0.00 0.00 0.00 2.32
922 1214 0.104777 ATCTGCTATCCTGCCTCCCA 60.105 55.000 0.00 0.00 0.00 4.37
924 1216 1.830477 CCTATCTGCTATCCTGCCTCC 59.170 57.143 0.00 0.00 0.00 4.30
932 1224 3.169099 TCTGCTTCCCCTATCTGCTATC 58.831 50.000 0.00 0.00 0.00 2.08
933 1225 3.172339 CTCTGCTTCCCCTATCTGCTAT 58.828 50.000 0.00 0.00 0.00 2.97
934 1226 2.603021 CTCTGCTTCCCCTATCTGCTA 58.397 52.381 0.00 0.00 0.00 3.49
950 1243 0.389556 TCTGCTTCTGCTTCGCTCTG 60.390 55.000 0.00 0.00 40.48 3.35
953 1246 1.297456 GCTTCTGCTTCTGCTTCGCT 61.297 55.000 0.00 0.00 40.48 4.93
954 1247 1.134281 GCTTCTGCTTCTGCTTCGC 59.866 57.895 0.00 0.00 40.48 4.70
955 1248 0.443088 CTGCTTCTGCTTCTGCTTCG 59.557 55.000 0.00 0.00 40.48 3.79
979 1281 2.490115 TCTCTTTCTTCCTGCTCGACTC 59.510 50.000 0.00 0.00 0.00 3.36
982 1284 2.167281 CCATCTCTTTCTTCCTGCTCGA 59.833 50.000 0.00 0.00 0.00 4.04
1183 1523 1.002251 GATCTCGGCGAGGAACTACTG 60.002 57.143 33.93 8.85 41.55 2.74
1197 1537 3.865745 ACAAAATTAGCGTCTGGATCTCG 59.134 43.478 0.00 0.00 0.00 4.04
1212 1552 4.651045 AGCAACCAGAGGAGAAACAAAATT 59.349 37.500 0.00 0.00 0.00 1.82
1217 1557 2.575532 CAAGCAACCAGAGGAGAAACA 58.424 47.619 0.00 0.00 0.00 2.83
1218 1558 1.268079 GCAAGCAACCAGAGGAGAAAC 59.732 52.381 0.00 0.00 0.00 2.78
1299 1640 9.736414 ATCTGGGTTAATAATCAGATGAGAATG 57.264 33.333 15.69 0.00 43.02 2.67
1305 1646 7.918536 CCAGATCTGGGTTAATAATCAGATG 57.081 40.000 31.14 11.53 46.81 2.90
1351 1730 9.239002 CGTCAGTAAATCTAAAATCCTAGTGAG 57.761 37.037 0.00 0.00 0.00 3.51
1353 1732 7.042658 GGCGTCAGTAAATCTAAAATCCTAGTG 60.043 40.741 0.00 0.00 0.00 2.74
1354 1733 6.985059 GGCGTCAGTAAATCTAAAATCCTAGT 59.015 38.462 0.00 0.00 0.00 2.57
1355 1734 6.144080 CGGCGTCAGTAAATCTAAAATCCTAG 59.856 42.308 0.00 0.00 0.00 3.02
1356 1735 5.981315 CGGCGTCAGTAAATCTAAAATCCTA 59.019 40.000 0.00 0.00 0.00 2.94
1357 1736 4.809426 CGGCGTCAGTAAATCTAAAATCCT 59.191 41.667 0.00 0.00 0.00 3.24
1359 1738 5.519206 ACTCGGCGTCAGTAAATCTAAAATC 59.481 40.000 6.85 0.00 0.00 2.17
1360 1739 5.416947 ACTCGGCGTCAGTAAATCTAAAAT 58.583 37.500 6.85 0.00 0.00 1.82
1361 1740 4.813027 ACTCGGCGTCAGTAAATCTAAAA 58.187 39.130 6.85 0.00 0.00 1.52
1363 1742 4.025015 GACTCGGCGTCAGTAAATCTAA 57.975 45.455 6.85 0.00 42.37 2.10
1364 1743 3.687572 GACTCGGCGTCAGTAAATCTA 57.312 47.619 6.85 0.00 42.37 1.98
1365 1744 2.563471 GACTCGGCGTCAGTAAATCT 57.437 50.000 6.85 0.00 42.37 2.40
1393 1774 1.227556 GTTCCAGTGAGCCGTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
1404 1785 3.326747 GCGAACAAGATACAGTTCCAGT 58.673 45.455 0.00 0.00 40.69 4.00
1408 1789 3.851098 AGAGGCGAACAAGATACAGTTC 58.149 45.455 0.00 0.00 40.45 3.01
1424 1805 9.967346 GGAGGATAAAATAAAATGTAAAGAGGC 57.033 33.333 0.00 0.00 0.00 4.70
1433 1974 5.334879 CGGCGGAGGAGGATAAAATAAAATG 60.335 44.000 0.00 0.00 0.00 2.32
1445 1986 0.322636 GATAGATCGGCGGAGGAGGA 60.323 60.000 7.21 0.00 0.00 3.71
1446 1987 1.316706 GGATAGATCGGCGGAGGAGG 61.317 65.000 7.21 0.00 0.00 4.30
1447 1988 0.609406 TGGATAGATCGGCGGAGGAG 60.609 60.000 7.21 0.00 0.00 3.69
1490 2031 6.304624 ACTCCTACCTTTTCCGAGAAATTTT 58.695 36.000 0.00 0.00 0.00 1.82
1492 2033 5.500546 ACTCCTACCTTTTCCGAGAAATT 57.499 39.130 0.81 0.00 0.00 1.82
1493 2034 5.956563 TCTACTCCTACCTTTTCCGAGAAAT 59.043 40.000 0.81 0.00 0.00 2.17
1578 2120 2.101582 GCTCCTCGGAATCTTGCTTAGA 59.898 50.000 0.00 0.00 37.28 2.10
1579 2121 2.159043 TGCTCCTCGGAATCTTGCTTAG 60.159 50.000 0.00 0.00 0.00 2.18
1580 2122 1.831106 TGCTCCTCGGAATCTTGCTTA 59.169 47.619 0.00 0.00 0.00 3.09
1589 2131 1.030488 CGTAGACCTGCTCCTCGGAA 61.030 60.000 0.00 0.00 0.00 4.30
1592 2139 2.018544 CTCGTAGACCTGCTCCTCG 58.981 63.158 0.00 0.00 0.00 4.63
1593 2140 1.032657 TGCTCGTAGACCTGCTCCTC 61.033 60.000 0.00 0.00 0.00 3.71
1602 2149 5.804173 TCGACTAGTTAATTGCTCGTAGAC 58.196 41.667 0.00 0.00 0.00 2.59
1608 2155 4.673441 TCTGCTCGACTAGTTAATTGCTC 58.327 43.478 0.00 0.00 0.00 4.26
1641 2188 3.914312 TCCACGCAAAACAAGAACAAAA 58.086 36.364 0.00 0.00 0.00 2.44
1661 2208 1.864082 GCTTAATCTCAAGCTCCGCTC 59.136 52.381 0.70 0.00 46.04 5.03
1834 2583 1.738099 CCAGCTCGTACACCAGTGC 60.738 63.158 0.00 0.00 0.00 4.40
1836 2585 0.826256 TGACCAGCTCGTACACCAGT 60.826 55.000 0.00 0.00 0.00 4.00
2199 2959 1.521457 CCATTCTCGCGGCAGCTAA 60.521 57.895 6.13 0.00 42.32 3.09
2207 2967 3.218398 GCGATTTTATTCCATTCTCGCG 58.782 45.455 0.00 0.00 40.25 5.87
2247 3007 7.409358 AGAATTCCAAGCTTCCTCTCTAAAAT 58.591 34.615 0.65 0.00 0.00 1.82
2257 3017 1.135286 CGCCAAGAATTCCAAGCTTCC 60.135 52.381 0.65 0.00 0.00 3.46
2276 3036 4.326413 ACATTCAACATCATCAACGACG 57.674 40.909 0.00 0.00 0.00 5.12
2279 3039 5.045668 TCCAACATTCAACATCATCAACG 57.954 39.130 0.00 0.00 0.00 4.10
2281 3041 7.317390 CAAGATCCAACATTCAACATCATCAA 58.683 34.615 0.00 0.00 0.00 2.57
2282 3042 6.127563 CCAAGATCCAACATTCAACATCATCA 60.128 38.462 0.00 0.00 0.00 3.07
2283 3043 6.127535 ACCAAGATCCAACATTCAACATCATC 60.128 38.462 0.00 0.00 0.00 2.92
2284 3044 5.718130 ACCAAGATCCAACATTCAACATCAT 59.282 36.000 0.00 0.00 0.00 2.45
2287 3047 4.834496 ACACCAAGATCCAACATTCAACAT 59.166 37.500 0.00 0.00 0.00 2.71
2300 3063 5.807011 GCCATAAACATTCAACACCAAGATC 59.193 40.000 0.00 0.00 0.00 2.75
2354 3117 1.074889 AGGGCCGAACTACCAACAAAT 59.925 47.619 0.00 0.00 0.00 2.32
2364 3127 3.756963 GACAAAGATTTAAGGGCCGAACT 59.243 43.478 0.00 0.00 0.00 3.01
2365 3128 3.504520 TGACAAAGATTTAAGGGCCGAAC 59.495 43.478 0.00 0.00 0.00 3.95
2366 3129 3.756434 CTGACAAAGATTTAAGGGCCGAA 59.244 43.478 0.00 0.00 0.00 4.30
2367 3130 3.343617 CTGACAAAGATTTAAGGGCCGA 58.656 45.455 0.00 0.00 0.00 5.54
2378 3141 3.006110 CCACCAAATGTGCTGACAAAGAT 59.994 43.478 0.00 0.00 44.01 2.40
2395 3158 4.819761 GCAGATCTCGCGCCACCA 62.820 66.667 0.00 0.00 0.00 4.17
2411 3174 0.657840 AGGCGCGTAATCAATTCAGC 59.342 50.000 8.43 0.00 0.00 4.26
2413 3176 1.933181 CAGAGGCGCGTAATCAATTCA 59.067 47.619 8.43 0.00 0.00 2.57
2434 3202 3.240203 CACGCACGGTGTAGTTGG 58.760 61.111 10.24 0.00 41.89 3.77
2449 3217 0.946221 AGCAAGCACTCGTACTGCAC 60.946 55.000 8.15 0.00 37.08 4.57
2450 3218 0.945743 CAGCAAGCACTCGTACTGCA 60.946 55.000 8.15 0.00 37.08 4.41
2451 3219 0.946221 ACAGCAAGCACTCGTACTGC 60.946 55.000 0.00 0.00 34.63 4.40
2452 3220 2.254459 CTACAGCAAGCACTCGTACTG 58.746 52.381 0.00 0.00 0.00 2.74
2453 3221 1.402984 GCTACAGCAAGCACTCGTACT 60.403 52.381 0.00 0.00 42.30 2.73
2454 3222 0.992802 GCTACAGCAAGCACTCGTAC 59.007 55.000 0.00 0.00 42.30 3.67
2463 3235 1.812922 CAGCTCCCGCTACAGCAAG 60.813 63.158 1.61 0.00 46.99 4.01
2493 3265 0.819259 GAACCTGTTCCACAGCTGCA 60.819 55.000 15.27 1.78 44.63 4.41
2502 3274 1.635663 CGTCGCCATGAACCTGTTCC 61.636 60.000 7.51 0.00 38.77 3.62
2534 3306 2.517402 TGAACGTGGGTGGTTGGC 60.517 61.111 0.00 0.00 0.00 4.52
2535 3307 0.884704 CTCTGAACGTGGGTGGTTGG 60.885 60.000 0.00 0.00 0.00 3.77
2536 3308 1.507141 GCTCTGAACGTGGGTGGTTG 61.507 60.000 0.00 0.00 0.00 3.77
2537 3309 1.227853 GCTCTGAACGTGGGTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
2612 6413 2.471607 CACGCACACGCTCATCAC 59.528 61.111 0.00 0.00 45.53 3.06
2616 6417 2.738139 CATCCACGCACACGCTCA 60.738 61.111 0.00 0.00 45.53 4.26
2645 6446 2.355837 TCGTGTTCCGCACTCTGC 60.356 61.111 0.00 0.00 45.57 4.26
2654 6455 1.507174 CCGACTCTCCTCGTGTTCC 59.493 63.158 0.00 0.00 31.35 3.62
2657 6458 2.361357 CCCCGACTCTCCTCGTGT 60.361 66.667 0.00 0.00 31.35 4.49
2680 6481 1.436600 ATGTCTGCGCTGAACAAGAG 58.563 50.000 19.14 0.00 0.00 2.85
2683 6484 1.270571 TGGTATGTCTGCGCTGAACAA 60.271 47.619 19.14 4.57 0.00 2.83
2684 6485 0.320050 TGGTATGTCTGCGCTGAACA 59.680 50.000 19.14 17.84 0.00 3.18
2685 6486 0.721718 GTGGTATGTCTGCGCTGAAC 59.278 55.000 19.14 13.18 0.00 3.18
2690 7274 3.081133 CGTGTGGTATGTCTGCGC 58.919 61.111 0.00 0.00 0.00 6.09
2692 7276 2.106683 GGGCGTGTGGTATGTCTGC 61.107 63.158 0.00 0.00 0.00 4.26
2693 7277 0.107703 ATGGGCGTGTGGTATGTCTG 60.108 55.000 0.00 0.00 0.00 3.51
2726 7310 2.740055 CAGCAGTGACAGCGGTCC 60.740 66.667 14.62 6.00 43.65 4.46
2727 7311 2.740055 CCAGCAGTGACAGCGGTC 60.740 66.667 10.32 10.32 44.57 4.79
2731 7315 1.233285 CCTGAACCAGCAGTGACAGC 61.233 60.000 0.00 0.00 34.42 4.40
2732 7316 1.233285 GCCTGAACCAGCAGTGACAG 61.233 60.000 0.00 0.00 35.07 3.51
2735 7319 2.116983 GAGGCCTGAACCAGCAGTGA 62.117 60.000 12.00 0.00 34.06 3.41
2737 7321 2.753029 GAGGCCTGAACCAGCAGT 59.247 61.111 12.00 0.00 34.06 4.40
2747 7331 2.286365 TACAAACCAAAGGAGGCCTG 57.714 50.000 12.00 0.00 32.13 4.85
2751 7335 6.038271 CGAATTCCTATACAAACCAAAGGAGG 59.962 42.308 0.00 0.00 37.63 4.30
2752 7336 6.598064 ACGAATTCCTATACAAACCAAAGGAG 59.402 38.462 0.00 0.00 37.63 3.69
2754 7338 6.753107 ACGAATTCCTATACAAACCAAAGG 57.247 37.500 0.00 0.00 0.00 3.11
2756 7340 7.942990 ACAAACGAATTCCTATACAAACCAAA 58.057 30.769 0.00 0.00 0.00 3.28
2758 7342 7.334921 CCTACAAACGAATTCCTATACAAACCA 59.665 37.037 0.00 0.00 0.00 3.67
2759 7343 7.550196 TCCTACAAACGAATTCCTATACAAACC 59.450 37.037 0.00 0.00 0.00 3.27
2762 7346 9.675464 AATTCCTACAAACGAATTCCTATACAA 57.325 29.630 0.00 0.00 34.37 2.41
2788 7372 8.324306 CCAAAGGAGCAAATCATATCCTATAGA 58.676 37.037 0.00 0.00 41.36 1.98
2789 7373 8.105829 ACCAAAGGAGCAAATCATATCCTATAG 58.894 37.037 0.00 0.00 41.36 1.31
2790 7374 7.988937 ACCAAAGGAGCAAATCATATCCTATA 58.011 34.615 0.00 0.00 41.36 1.31
2794 7378 5.859205 AACCAAAGGAGCAAATCATATCC 57.141 39.130 0.00 0.00 0.00 2.59
2795 7379 6.633856 ACAAACCAAAGGAGCAAATCATATC 58.366 36.000 0.00 0.00 0.00 1.63
2797 7381 7.716799 ATACAAACCAAAGGAGCAAATCATA 57.283 32.000 0.00 0.00 0.00 2.15
2799 7383 6.152661 CCTATACAAACCAAAGGAGCAAATCA 59.847 38.462 0.00 0.00 0.00 2.57
2800 7384 6.377146 TCCTATACAAACCAAAGGAGCAAATC 59.623 38.462 0.00 0.00 32.60 2.17
2802 7386 5.636123 TCCTATACAAACCAAAGGAGCAAA 58.364 37.500 0.00 0.00 32.60 3.68
2803 7387 5.249780 TCCTATACAAACCAAAGGAGCAA 57.750 39.130 0.00 0.00 32.60 3.91
2804 7388 4.919774 TCCTATACAAACCAAAGGAGCA 57.080 40.909 0.00 0.00 32.60 4.26
2805 7389 6.775594 AATTCCTATACAAACCAAAGGAGC 57.224 37.500 0.00 0.00 37.63 4.70
2806 7390 8.122472 ACAAATTCCTATACAAACCAAAGGAG 57.878 34.615 0.00 0.00 37.63 3.69
2807 7391 8.485578 AACAAATTCCTATACAAACCAAAGGA 57.514 30.769 0.00 0.00 34.56 3.36
2808 7392 8.757164 GAACAAATTCCTATACAAACCAAAGG 57.243 34.615 0.00 0.00 0.00 3.11
2877 7461 7.761409 ACAAAAGGGCTTCAAAGAAATTTTTC 58.239 30.769 0.00 0.00 37.45 2.29
2878 7462 7.701539 ACAAAAGGGCTTCAAAGAAATTTTT 57.298 28.000 0.00 0.00 0.00 1.94
2879 7463 7.701539 AACAAAAGGGCTTCAAAGAAATTTT 57.298 28.000 0.00 0.00 0.00 1.82
2880 7464 7.537715 CAAACAAAAGGGCTTCAAAGAAATTT 58.462 30.769 0.00 0.00 0.00 1.82
2882 7466 5.066375 GCAAACAAAAGGGCTTCAAAGAAAT 59.934 36.000 0.00 0.00 0.00 2.17
2886 7470 3.269178 TGCAAACAAAAGGGCTTCAAAG 58.731 40.909 0.00 0.00 0.00 2.77
2889 7473 1.138661 CCTGCAAACAAAAGGGCTTCA 59.861 47.619 0.00 0.00 0.00 3.02
2890 7474 1.412343 TCCTGCAAACAAAAGGGCTTC 59.588 47.619 0.00 0.00 0.00 3.86
2891 7475 1.494960 TCCTGCAAACAAAAGGGCTT 58.505 45.000 0.00 0.00 0.00 4.35
2893 7477 2.549064 ATTCCTGCAAACAAAAGGGC 57.451 45.000 0.00 0.00 0.00 5.19
2894 7478 5.665916 ATCTATTCCTGCAAACAAAAGGG 57.334 39.130 0.00 0.00 0.00 3.95
2932 8476 6.927294 AACGTGAAGGATTGATTTCTATCC 57.073 37.500 11.62 11.62 44.86 2.59
2935 8479 7.737972 TCAAAACGTGAAGGATTGATTTCTA 57.262 32.000 0.00 0.00 31.51 2.10
2936 8480 6.633500 TCAAAACGTGAAGGATTGATTTCT 57.367 33.333 0.00 0.00 31.51 2.52
2948 8492 4.803098 TTTTTCCCCTTCAAAACGTGAA 57.197 36.364 0.00 0.00 44.20 3.18
2966 8510 7.175104 TCCATTGAGTCTAGCCTAATGTTTTT 58.825 34.615 0.00 0.00 0.00 1.94
2967 8511 6.721318 TCCATTGAGTCTAGCCTAATGTTTT 58.279 36.000 0.00 0.00 0.00 2.43
2968 8512 6.313519 TCCATTGAGTCTAGCCTAATGTTT 57.686 37.500 0.00 0.00 0.00 2.83
2969 8513 5.957771 TCCATTGAGTCTAGCCTAATGTT 57.042 39.130 0.00 0.00 0.00 2.71
2970 8514 5.957771 TTCCATTGAGTCTAGCCTAATGT 57.042 39.130 0.00 0.00 0.00 2.71
2971 8515 7.630242 TTTTTCCATTGAGTCTAGCCTAATG 57.370 36.000 0.00 0.00 0.00 1.90
3003 8547 9.986157 ATTCCTATATCATTTGGTGCATAGAAT 57.014 29.630 0.00 0.00 30.31 2.40
3006 8550 9.234827 TCAATTCCTATATCATTTGGTGCATAG 57.765 33.333 0.00 0.00 0.00 2.23
3007 8551 9.013229 GTCAATTCCTATATCATTTGGTGCATA 57.987 33.333 0.00 0.00 0.00 3.14
3008 8552 7.506599 TGTCAATTCCTATATCATTTGGTGCAT 59.493 33.333 0.00 0.00 0.00 3.96
3009 8553 6.832900 TGTCAATTCCTATATCATTTGGTGCA 59.167 34.615 0.00 0.00 0.00 4.57
3010 8554 7.275888 TGTCAATTCCTATATCATTTGGTGC 57.724 36.000 0.00 0.00 0.00 5.01
3011 8555 7.811236 GCATGTCAATTCCTATATCATTTGGTG 59.189 37.037 0.00 0.00 0.00 4.17
3012 8556 7.506599 TGCATGTCAATTCCTATATCATTTGGT 59.493 33.333 0.00 0.00 0.00 3.67
3013 8557 7.888424 TGCATGTCAATTCCTATATCATTTGG 58.112 34.615 0.00 0.00 0.00 3.28
3014 8558 9.353999 CATGCATGTCAATTCCTATATCATTTG 57.646 33.333 18.91 0.00 0.00 2.32
3016 8560 8.645814 ACATGCATGTCAATTCCTATATCATT 57.354 30.769 26.61 0.00 35.87 2.57
3032 8576 1.676746 GCCTGAGATGACATGCATGT 58.323 50.000 31.82 31.82 45.16 3.21
3033 8577 0.952280 GGCCTGAGATGACATGCATG 59.048 55.000 25.09 25.09 37.34 4.06
3034 8578 0.844660 AGGCCTGAGATGACATGCAT 59.155 50.000 3.11 0.00 40.77 3.96
3035 8579 0.179702 GAGGCCTGAGATGACATGCA 59.820 55.000 12.00 0.00 34.14 3.96
3036 8580 0.469070 AGAGGCCTGAGATGACATGC 59.531 55.000 12.00 0.00 0.00 4.06
3037 8581 3.278668 AAAGAGGCCTGAGATGACATG 57.721 47.619 12.00 0.00 0.00 3.21
3038 8582 3.618351 CAAAAGAGGCCTGAGATGACAT 58.382 45.455 12.00 0.00 0.00 3.06
3039 8583 2.290514 CCAAAAGAGGCCTGAGATGACA 60.291 50.000 12.00 0.00 0.00 3.58
3040 8584 2.290577 ACCAAAAGAGGCCTGAGATGAC 60.291 50.000 12.00 0.00 0.00 3.06
3042 8586 2.503895 ACCAAAAGAGGCCTGAGATG 57.496 50.000 12.00 3.83 0.00 2.90
3043 8587 3.532641 AAACCAAAAGAGGCCTGAGAT 57.467 42.857 12.00 0.00 0.00 2.75
3044 8588 4.447138 TTAAACCAAAAGAGGCCTGAGA 57.553 40.909 12.00 0.00 0.00 3.27
3045 8589 5.529581 TTTTAAACCAAAAGAGGCCTGAG 57.470 39.130 12.00 0.00 32.31 3.35
3104 8648 8.934697 ACTAAAGGGCTTTAAAGGAAAAATTCT 58.065 29.630 16.78 0.00 34.95 2.40
3106 8650 9.555727 GAACTAAAGGGCTTTAAAGGAAAAATT 57.444 29.630 16.78 0.00 34.95 1.82
3107 8651 8.710239 TGAACTAAAGGGCTTTAAAGGAAAAAT 58.290 29.630 16.78 0.00 34.95 1.82
3108 8652 7.982919 GTGAACTAAAGGGCTTTAAAGGAAAAA 59.017 33.333 16.78 0.00 34.95 1.94
3109 8653 7.124448 TGTGAACTAAAGGGCTTTAAAGGAAAA 59.876 33.333 16.78 0.00 34.95 2.29
3110 8654 6.608002 TGTGAACTAAAGGGCTTTAAAGGAAA 59.392 34.615 16.78 0.00 34.95 3.13
3112 8656 5.697067 TGTGAACTAAAGGGCTTTAAAGGA 58.303 37.500 16.78 0.00 34.95 3.36
3113 8657 5.048013 CCTGTGAACTAAAGGGCTTTAAAGG 60.048 44.000 16.78 1.00 34.95 3.11
3114 8658 5.768164 TCCTGTGAACTAAAGGGCTTTAAAG 59.232 40.000 11.02 11.02 34.95 1.85
3115 8659 5.697067 TCCTGTGAACTAAAGGGCTTTAAA 58.303 37.500 0.00 0.00 34.95 1.52
3117 8661 4.986054 TCCTGTGAACTAAAGGGCTTTA 57.014 40.909 0.00 0.00 34.23 1.85
3118 8662 3.876309 TCCTGTGAACTAAAGGGCTTT 57.124 42.857 0.00 0.00 36.63 3.51
3119 8663 3.487372 GTTCCTGTGAACTAAAGGGCTT 58.513 45.455 0.00 0.00 46.03 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.