Multiple sequence alignment - TraesCS3A01G452000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G452000 chr3A 100.000 2363 0 0 1 2363 690081123 690078761 0.000000e+00 4364
1 TraesCS3A01G452000 chr3D 90.150 1604 87 24 641 2205 553680084 553678513 0.000000e+00 2021
2 TraesCS3A01G452000 chr3D 89.634 492 26 12 1 481 553680567 553680090 9.340000e-169 603
3 TraesCS3A01G452000 chr3D 90.854 164 14 1 2201 2363 553664763 553664600 3.950000e-53 219
4 TraesCS3A01G452000 chr3B 89.451 948 46 21 726 1643 734686963 734686040 0.000000e+00 1147
5 TraesCS3A01G452000 chr3B 89.135 497 29 10 1 481 734687504 734687017 1.560000e-166 595
6 TraesCS3A01G452000 chr3B 85.987 471 49 6 1910 2363 734671225 734670755 2.730000e-134 488
7 TraesCS3A01G452000 chr3B 96.016 251 10 0 1677 1927 734685948 734685698 2.190000e-110 409
8 TraesCS3A01G452000 chr1D 88.571 140 16 0 1222 1361 443167995 443167856 1.120000e-38 171
9 TraesCS3A01G452000 chr1B 87.143 140 18 0 1222 1361 601267957 601268096 2.430000e-35 159
10 TraesCS3A01G452000 chr1A 86.429 140 19 0 1222 1361 535858063 535858202 1.130000e-33 154
11 TraesCS3A01G452000 chr2D 82.308 130 20 3 1220 1347 63703428 63703300 2.480000e-20 110
12 TraesCS3A01G452000 chr2B 82.308 130 20 3 1220 1347 99773236 99773108 2.480000e-20 110
13 TraesCS3A01G452000 chr2A 81.538 130 21 3 1220 1347 65395919 65395791 1.160000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G452000 chr3A 690078761 690081123 2362 True 4364 4364 100.000 1 2363 1 chr3A.!!$R1 2362
1 TraesCS3A01G452000 chr3D 553678513 553680567 2054 True 1312 2021 89.892 1 2205 2 chr3D.!!$R2 2204
2 TraesCS3A01G452000 chr3B 734685698 734687504 1806 True 717 1147 91.534 1 1927 3 chr3B.!!$R2 1926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 541 0.250553 CCTTTGTTAGCACGGGGTCA 60.251 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2307 2456 0.032678 CACTACTAGCCATGCCGGAG 59.967 60.0 5.05 0.0 36.56 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 60 2.675423 GCGGACAAAACCTCCCCC 60.675 66.667 0.00 0.00 0.00 5.40
122 124 1.509127 CAAGATCGATCGTCGTCGTTG 59.491 52.381 19.33 12.37 41.35 4.10
163 165 4.084066 TGCTAATCACTGTAAACAAGTGCG 60.084 41.667 0.00 0.00 33.93 5.34
209 211 6.483974 CCACACACAGGTTTTGTAGTACATTA 59.516 38.462 3.28 0.00 38.16 1.90
224 226 8.464404 TGTAGTACATTAGGCACAGTAACTTAG 58.536 37.037 0.00 0.00 0.00 2.18
232 234 1.732259 CACAGTAACTTAGGCAAGCCG 59.268 52.381 5.28 0.00 41.95 5.52
263 273 3.636153 AGTGAGGATAGGGTTTTGCTC 57.364 47.619 0.00 0.00 0.00 4.26
271 282 0.250770 AGGGTTTTGCTCGGAGGTTC 60.251 55.000 7.20 0.00 0.00 3.62
301 314 4.578928 GGCAAAGAAAAGTCAGTGTCCTAA 59.421 41.667 0.00 0.00 0.00 2.69
334 358 3.933955 TCGTGTATTAACAATCCCAACGG 59.066 43.478 0.00 0.00 37.36 4.44
391 418 1.675641 GGCATGTTCTTCCAGCCGT 60.676 57.895 0.00 0.00 35.42 5.68
423 450 4.452455 CCTAATTAACACCGCATGGATCTC 59.548 45.833 0.00 0.00 39.21 2.75
431 458 1.451927 GCATGGATCTCGCCAACCA 60.452 57.895 0.00 0.00 42.16 3.67
463 491 2.086610 ACCAGGTGCCAAAAGACATT 57.913 45.000 0.00 0.00 0.00 2.71
482 510 7.288317 GACATTAGTCTTCTTCATGTCAGTG 57.712 40.000 5.85 0.00 39.88 3.66
484 512 7.095910 ACATTAGTCTTCTTCATGTCAGTGAG 58.904 38.462 0.00 0.00 0.00 3.51
495 523 0.452585 GTCAGTGAGACGGAGCTACC 59.547 60.000 0.00 0.00 37.53 3.18
496 524 0.328592 TCAGTGAGACGGAGCTACCT 59.671 55.000 0.00 0.00 36.31 3.08
497 525 1.178276 CAGTGAGACGGAGCTACCTT 58.822 55.000 0.00 0.00 36.31 3.50
498 526 1.546476 CAGTGAGACGGAGCTACCTTT 59.454 52.381 0.00 0.00 36.31 3.11
499 527 1.546476 AGTGAGACGGAGCTACCTTTG 59.454 52.381 0.00 0.00 36.31 2.77
500 528 1.272769 GTGAGACGGAGCTACCTTTGT 59.727 52.381 0.00 0.00 36.31 2.83
501 529 1.968493 TGAGACGGAGCTACCTTTGTT 59.032 47.619 0.00 0.00 36.31 2.83
502 530 3.057033 GTGAGACGGAGCTACCTTTGTTA 60.057 47.826 0.00 0.00 36.31 2.41
503 531 3.192844 TGAGACGGAGCTACCTTTGTTAG 59.807 47.826 0.00 0.00 36.31 2.34
504 532 2.094130 AGACGGAGCTACCTTTGTTAGC 60.094 50.000 0.00 0.00 37.12 3.09
505 533 1.621814 ACGGAGCTACCTTTGTTAGCA 59.378 47.619 4.31 0.00 39.16 3.49
506 534 2.000447 CGGAGCTACCTTTGTTAGCAC 59.000 52.381 4.31 0.00 39.16 4.40
507 535 2.000447 GGAGCTACCTTTGTTAGCACG 59.000 52.381 4.31 0.00 39.16 5.34
508 536 2.000447 GAGCTACCTTTGTTAGCACGG 59.000 52.381 4.31 0.00 39.16 4.94
509 537 1.084289 GCTACCTTTGTTAGCACGGG 58.916 55.000 0.00 0.00 36.86 5.28
510 538 1.734163 CTACCTTTGTTAGCACGGGG 58.266 55.000 0.00 0.00 0.00 5.73
511 539 1.002773 CTACCTTTGTTAGCACGGGGT 59.997 52.381 0.00 0.00 0.00 4.95
512 540 0.250597 ACCTTTGTTAGCACGGGGTC 60.251 55.000 0.00 0.00 0.00 4.46
513 541 0.250553 CCTTTGTTAGCACGGGGTCA 60.251 55.000 0.00 0.00 0.00 4.02
514 542 1.600023 CTTTGTTAGCACGGGGTCAA 58.400 50.000 0.00 0.00 0.00 3.18
515 543 2.159382 CTTTGTTAGCACGGGGTCAAT 58.841 47.619 0.00 0.00 0.00 2.57
516 544 2.279935 TTGTTAGCACGGGGTCAATT 57.720 45.000 0.00 0.00 0.00 2.32
517 545 1.529226 TGTTAGCACGGGGTCAATTG 58.471 50.000 0.00 0.00 0.00 2.32
518 546 1.072489 TGTTAGCACGGGGTCAATTGA 59.928 47.619 3.38 3.38 0.00 2.57
519 547 1.467342 GTTAGCACGGGGTCAATTGAC 59.533 52.381 27.16 27.16 44.04 3.18
531 559 4.824479 GTCAATTGACCCCCAATGAAAT 57.176 40.909 25.26 0.00 44.28 2.17
532 560 5.164620 GTCAATTGACCCCCAATGAAATT 57.835 39.130 25.26 0.00 44.28 1.82
533 561 6.293004 GTCAATTGACCCCCAATGAAATTA 57.707 37.500 25.26 0.00 44.28 1.40
534 562 6.340522 GTCAATTGACCCCCAATGAAATTAG 58.659 40.000 25.26 0.00 44.28 1.73
535 563 5.104982 TCAATTGACCCCCAATGAAATTAGC 60.105 40.000 3.38 0.00 44.28 3.09
536 564 3.464720 TGACCCCCAATGAAATTAGCA 57.535 42.857 0.00 0.00 32.46 3.49
537 565 3.784178 TGACCCCCAATGAAATTAGCAA 58.216 40.909 0.00 0.00 32.46 3.91
538 566 3.768757 TGACCCCCAATGAAATTAGCAAG 59.231 43.478 0.00 0.00 32.46 4.01
539 567 4.023291 GACCCCCAATGAAATTAGCAAGA 58.977 43.478 0.00 0.00 32.46 3.02
540 568 4.623863 ACCCCCAATGAAATTAGCAAGAT 58.376 39.130 0.00 0.00 32.46 2.40
541 569 4.651045 ACCCCCAATGAAATTAGCAAGATC 59.349 41.667 0.00 0.00 32.46 2.75
542 570 4.897670 CCCCCAATGAAATTAGCAAGATCT 59.102 41.667 0.00 0.00 32.46 2.75
543 571 5.364735 CCCCCAATGAAATTAGCAAGATCTT 59.635 40.000 0.88 0.88 32.46 2.40
544 572 6.462067 CCCCCAATGAAATTAGCAAGATCTTC 60.462 42.308 4.57 0.94 32.46 2.87
545 573 6.097270 CCCCAATGAAATTAGCAAGATCTTCA 59.903 38.462 4.57 0.00 32.46 3.02
546 574 6.976925 CCCAATGAAATTAGCAAGATCTTCAC 59.023 38.462 4.57 0.60 32.46 3.18
547 575 7.147949 CCCAATGAAATTAGCAAGATCTTCACT 60.148 37.037 4.57 8.77 32.46 3.41
548 576 8.896744 CCAATGAAATTAGCAAGATCTTCACTA 58.103 33.333 4.57 7.75 32.46 2.74
551 579 9.678260 ATGAAATTAGCAAGATCTTCACTAACT 57.322 29.630 21.48 13.26 0.00 2.24
588 616 9.314321 CGATATACATTTATAGAACATGACCCC 57.686 37.037 0.00 0.00 0.00 4.95
590 618 9.959721 ATATACATTTATAGAACATGACCCCAC 57.040 33.333 0.00 0.00 0.00 4.61
591 619 6.327386 ACATTTATAGAACATGACCCCACT 57.673 37.500 0.00 0.00 0.00 4.00
592 620 6.122277 ACATTTATAGAACATGACCCCACTG 58.878 40.000 0.00 0.00 0.00 3.66
593 621 5.772393 TTTATAGAACATGACCCCACTGT 57.228 39.130 0.00 0.00 0.00 3.55
594 622 3.914426 ATAGAACATGACCCCACTGTC 57.086 47.619 0.00 0.00 35.77 3.51
602 630 2.615391 TGACCCCACTGTCATAGAACA 58.385 47.619 0.00 0.00 40.22 3.18
603 631 3.181329 TGACCCCACTGTCATAGAACAT 58.819 45.455 0.00 0.00 40.22 2.71
604 632 3.055167 TGACCCCACTGTCATAGAACATG 60.055 47.826 0.00 0.00 40.22 3.21
605 633 3.181329 ACCCCACTGTCATAGAACATGA 58.819 45.455 0.00 0.00 0.00 3.07
606 634 3.055094 ACCCCACTGTCATAGAACATGAC 60.055 47.826 0.00 9.85 46.28 3.06
607 635 3.535561 CCCACTGTCATAGAACATGACC 58.464 50.000 13.30 0.00 45.70 4.02
608 636 3.535561 CCACTGTCATAGAACATGACCC 58.464 50.000 13.30 0.00 45.70 4.46
609 637 3.535561 CACTGTCATAGAACATGACCCC 58.464 50.000 13.30 0.00 45.70 4.95
610 638 3.055167 CACTGTCATAGAACATGACCCCA 60.055 47.826 13.30 0.00 45.70 4.96
611 639 3.055094 ACTGTCATAGAACATGACCCCAC 60.055 47.826 13.30 0.00 45.70 4.61
612 640 3.181329 TGTCATAGAACATGACCCCACT 58.819 45.455 13.30 0.00 45.70 4.00
613 641 4.358214 TGTCATAGAACATGACCCCACTA 58.642 43.478 13.30 0.00 45.70 2.74
614 642 4.780554 TGTCATAGAACATGACCCCACTAA 59.219 41.667 13.30 0.00 45.70 2.24
615 643 5.104941 TGTCATAGAACATGACCCCACTAAG 60.105 44.000 13.30 0.00 45.70 2.18
616 644 2.789409 AGAACATGACCCCACTAAGC 57.211 50.000 0.00 0.00 0.00 3.09
617 645 2.269940 AGAACATGACCCCACTAAGCT 58.730 47.619 0.00 0.00 0.00 3.74
618 646 3.450904 AGAACATGACCCCACTAAGCTA 58.549 45.455 0.00 0.00 0.00 3.32
619 647 4.040755 AGAACATGACCCCACTAAGCTAT 58.959 43.478 0.00 0.00 0.00 2.97
620 648 4.475016 AGAACATGACCCCACTAAGCTATT 59.525 41.667 0.00 0.00 0.00 1.73
621 649 4.862641 ACATGACCCCACTAAGCTATTT 57.137 40.909 0.00 0.00 0.00 1.40
622 650 5.193099 ACATGACCCCACTAAGCTATTTT 57.807 39.130 0.00 0.00 0.00 1.82
623 651 5.580022 ACATGACCCCACTAAGCTATTTTT 58.420 37.500 0.00 0.00 0.00 1.94
656 684 2.033424 GTGAGTGAGGGTTTGCTTGTTC 59.967 50.000 0.00 0.00 0.00 3.18
665 693 6.983890 TGAGGGTTTGCTTGTTCTTATTTTTC 59.016 34.615 0.00 0.00 0.00 2.29
723 751 4.994852 TGTGTGTAGTAGTGCAAGGATTTC 59.005 41.667 0.00 0.00 0.00 2.17
724 752 4.091509 GTGTGTAGTAGTGCAAGGATTTCG 59.908 45.833 0.00 0.00 0.00 3.46
819 849 0.459585 TTAAGCGACCGTCCTGATGC 60.460 55.000 0.00 0.00 0.00 3.91
838 868 3.511699 TGCGATCTTAACTACACTGCAG 58.488 45.455 13.48 13.48 0.00 4.41
844 887 1.189524 TAACTACACTGCAGCCCGGT 61.190 55.000 15.27 9.79 0.00 5.28
861 904 1.080974 GTCACTACCCCACACGTCG 60.081 63.158 0.00 0.00 0.00 5.12
862 905 1.228215 TCACTACCCCACACGTCGA 60.228 57.895 0.00 0.00 0.00 4.20
863 906 1.080974 CACTACCCCACACGTCGAC 60.081 63.158 5.18 5.18 0.00 4.20
864 907 2.177531 CTACCCCACACGTCGACG 59.822 66.667 34.58 34.58 46.33 5.12
1089 1132 2.278271 GTCGCAGCCGAGCTAGAC 60.278 66.667 13.48 13.48 45.38 2.59
1218 1261 3.554342 CGGAGGCATCTGGGAGGG 61.554 72.222 0.00 0.00 0.00 4.30
1363 1406 4.906792 CCCGCTGCAGAGGCTAGC 62.907 72.222 29.31 6.04 41.91 3.42
1364 1407 3.847602 CCGCTGCAGAGGCTAGCT 61.848 66.667 24.15 0.00 40.04 3.32
1365 1408 2.493651 CCGCTGCAGAGGCTAGCTA 61.494 63.158 24.15 0.00 40.04 3.32
1366 1409 1.664873 CGCTGCAGAGGCTAGCTAT 59.335 57.895 20.43 3.39 40.04 2.97
1367 1410 0.388391 CGCTGCAGAGGCTAGCTATC 60.388 60.000 20.43 13.07 40.04 2.08
1371 1414 0.038709 GCAGAGGCTAGCTATCCACG 60.039 60.000 15.72 7.30 36.96 4.94
1373 1432 1.081108 GAGGCTAGCTATCCACGCG 60.081 63.158 15.72 3.53 0.00 6.01
1463 1526 8.783093 TGTAAGACATGTTCGATTGATTTTCTT 58.217 29.630 0.00 0.00 0.00 2.52
1474 1537 8.839310 TCGATTGATTTTCTTCTTCTTCTTCT 57.161 30.769 0.00 0.00 0.00 2.85
1478 1541 8.752005 TTGATTTTCTTCTTCTTCTTCTTCCA 57.248 30.769 0.00 0.00 0.00 3.53
1484 1547 3.231818 TCTTCTTCTTCTTCCAGTCGGT 58.768 45.455 0.00 0.00 0.00 4.69
1486 1549 2.594131 TCTTCTTCTTCCAGTCGGTGA 58.406 47.619 0.00 0.00 0.00 4.02
1488 1551 3.193691 TCTTCTTCTTCCAGTCGGTGATC 59.806 47.826 0.00 0.00 0.00 2.92
1560 1625 3.887716 AGCAAATCATCCATGGCTACTTC 59.112 43.478 6.96 0.00 0.00 3.01
1580 1645 6.426587 ACTTCTGTAATTGGAGGCAATGTAT 58.573 36.000 0.00 0.00 0.00 2.29
1622 1687 8.955061 AAATTCATGTTACTGATTCGTTTGAG 57.045 30.769 0.00 0.00 0.00 3.02
1637 1702 1.996292 TTGAGCTGTACTGTGCGATC 58.004 50.000 0.00 0.00 0.00 3.69
1681 1810 4.985044 ACGGTGTTTTAATCGAGTTCAG 57.015 40.909 0.00 0.00 0.00 3.02
1686 1815 6.591261 GGTGTTTTAATCGAGTTCAGAGTTC 58.409 40.000 0.00 0.00 0.00 3.01
1908 2041 3.073735 AGCCTCTGGAGAGCACGG 61.074 66.667 11.48 0.00 40.75 4.94
1968 2101 1.202663 AGATGCAGCCAGAGTAGCATG 60.203 52.381 0.00 0.00 46.71 4.06
2003 2136 2.693069 CCGGCTAGTTGATGATGGATC 58.307 52.381 0.00 0.00 0.00 3.36
2044 2177 1.228245 ACAAGTTGTCATGCCGCCT 60.228 52.632 1.64 0.00 0.00 5.52
2046 2179 2.034879 AAGTTGTCATGCCGCCTCG 61.035 57.895 0.00 0.00 0.00 4.63
2060 2196 1.220206 CCTCGGAGCATCTGCAACT 59.780 57.895 4.79 0.00 42.67 3.16
2072 2208 3.042560 GCAACTGCACCCCACTTC 58.957 61.111 0.00 0.00 41.59 3.01
2078 2214 2.612746 GCACCCCACTTCCCCCTA 60.613 66.667 0.00 0.00 0.00 3.53
2086 2222 1.753463 ACTTCCCCCTAGACGCTCG 60.753 63.158 0.00 0.00 0.00 5.03
2087 2223 2.441532 TTCCCCCTAGACGCTCGG 60.442 66.667 0.00 0.00 0.00 4.63
2113 2262 5.356882 TCGTCTGAATCCAAAAACATCAC 57.643 39.130 0.00 0.00 0.00 3.06
2123 2272 2.086610 AAAACATCACCCAACAGCCT 57.913 45.000 0.00 0.00 0.00 4.58
2166 2315 1.667830 CTTGGACACACGCGGACAT 60.668 57.895 12.47 0.00 0.00 3.06
2167 2316 1.900585 CTTGGACACACGCGGACATG 61.901 60.000 12.47 1.02 0.00 3.21
2168 2317 2.357034 GGACACACGCGGACATGT 60.357 61.111 12.47 8.90 0.00 3.21
2172 2321 2.028484 ACACGCGGACATGTTCGT 59.972 55.556 26.63 19.36 35.35 3.85
2205 2354 0.608130 CCCATCTCGACCTCACACAA 59.392 55.000 0.00 0.00 0.00 3.33
2206 2355 1.208052 CCCATCTCGACCTCACACAAT 59.792 52.381 0.00 0.00 0.00 2.71
2207 2356 2.544685 CCATCTCGACCTCACACAATC 58.455 52.381 0.00 0.00 0.00 2.67
2208 2357 2.167281 CCATCTCGACCTCACACAATCT 59.833 50.000 0.00 0.00 0.00 2.40
2209 2358 3.443037 CATCTCGACCTCACACAATCTC 58.557 50.000 0.00 0.00 0.00 2.75
2210 2359 1.468914 TCTCGACCTCACACAATCTCG 59.531 52.381 0.00 0.00 0.00 4.04
2211 2360 1.200252 CTCGACCTCACACAATCTCGT 59.800 52.381 0.00 0.00 0.00 4.18
2212 2361 1.199327 TCGACCTCACACAATCTCGTC 59.801 52.381 0.00 0.00 0.00 4.20
2213 2362 1.732732 CGACCTCACACAATCTCGTCC 60.733 57.143 0.00 0.00 0.00 4.79
2214 2363 0.608640 ACCTCACACAATCTCGTCCC 59.391 55.000 0.00 0.00 0.00 4.46
2215 2364 0.608130 CCTCACACAATCTCGTCCCA 59.392 55.000 0.00 0.00 0.00 4.37
2216 2365 1.001974 CCTCACACAATCTCGTCCCAA 59.998 52.381 0.00 0.00 0.00 4.12
2217 2366 2.355108 CCTCACACAATCTCGTCCCAAT 60.355 50.000 0.00 0.00 0.00 3.16
2218 2367 2.932614 CTCACACAATCTCGTCCCAATC 59.067 50.000 0.00 0.00 0.00 2.67
2219 2368 2.009774 CACACAATCTCGTCCCAATCC 58.990 52.381 0.00 0.00 0.00 3.01
2220 2369 1.065418 ACACAATCTCGTCCCAATCCC 60.065 52.381 0.00 0.00 0.00 3.85
2221 2370 0.546598 ACAATCTCGTCCCAATCCCC 59.453 55.000 0.00 0.00 0.00 4.81
2222 2371 0.839946 CAATCTCGTCCCAATCCCCT 59.160 55.000 0.00 0.00 0.00 4.79
2223 2372 1.132500 AATCTCGTCCCAATCCCCTC 58.868 55.000 0.00 0.00 0.00 4.30
2224 2373 0.764752 ATCTCGTCCCAATCCCCTCC 60.765 60.000 0.00 0.00 0.00 4.30
2225 2374 1.383248 CTCGTCCCAATCCCCTCCT 60.383 63.158 0.00 0.00 0.00 3.69
2226 2375 0.983378 CTCGTCCCAATCCCCTCCTT 60.983 60.000 0.00 0.00 0.00 3.36
2227 2376 1.224592 CGTCCCAATCCCCTCCTTG 59.775 63.158 0.00 0.00 0.00 3.61
2228 2377 1.271840 CGTCCCAATCCCCTCCTTGA 61.272 60.000 0.00 0.00 0.00 3.02
2229 2378 0.999712 GTCCCAATCCCCTCCTTGAA 59.000 55.000 0.00 0.00 0.00 2.69
2230 2379 1.570979 GTCCCAATCCCCTCCTTGAAT 59.429 52.381 0.00 0.00 0.00 2.57
2231 2380 1.852965 TCCCAATCCCCTCCTTGAATC 59.147 52.381 0.00 0.00 0.00 2.52
2232 2381 1.570501 CCCAATCCCCTCCTTGAATCA 59.429 52.381 0.00 0.00 0.00 2.57
2233 2382 2.024080 CCCAATCCCCTCCTTGAATCAA 60.024 50.000 0.00 0.00 0.00 2.57
2234 2383 3.566332 CCCAATCCCCTCCTTGAATCAAA 60.566 47.826 0.00 0.00 0.00 2.69
2235 2384 3.448660 CCAATCCCCTCCTTGAATCAAAC 59.551 47.826 0.00 0.00 0.00 2.93
2236 2385 2.899303 TCCCCTCCTTGAATCAAACC 57.101 50.000 0.00 0.00 0.00 3.27
2237 2386 1.357761 TCCCCTCCTTGAATCAAACCC 59.642 52.381 0.00 0.00 0.00 4.11
2238 2387 1.359130 CCCCTCCTTGAATCAAACCCT 59.641 52.381 0.00 0.00 0.00 4.34
2239 2388 2.580783 CCCCTCCTTGAATCAAACCCTA 59.419 50.000 0.00 0.00 0.00 3.53
2240 2389 3.372025 CCCCTCCTTGAATCAAACCCTAG 60.372 52.174 0.00 0.00 0.00 3.02
2241 2390 3.267031 CCCTCCTTGAATCAAACCCTAGT 59.733 47.826 0.00 0.00 0.00 2.57
2242 2391 4.263949 CCCTCCTTGAATCAAACCCTAGTT 60.264 45.833 0.00 0.00 38.03 2.24
2243 2392 5.045140 CCCTCCTTGAATCAAACCCTAGTTA 60.045 44.000 0.00 0.00 34.19 2.24
2244 2393 6.353951 CCCTCCTTGAATCAAACCCTAGTTAT 60.354 42.308 0.00 0.00 34.19 1.89
2245 2394 7.119387 CCTCCTTGAATCAAACCCTAGTTATT 58.881 38.462 0.00 0.00 34.19 1.40
2246 2395 7.615757 CCTCCTTGAATCAAACCCTAGTTATTT 59.384 37.037 0.00 0.00 34.19 1.40
2247 2396 8.348285 TCCTTGAATCAAACCCTAGTTATTTG 57.652 34.615 0.00 4.87 34.19 2.32
2248 2397 7.947890 TCCTTGAATCAAACCCTAGTTATTTGT 59.052 33.333 0.00 0.00 34.19 2.83
2249 2398 8.028938 CCTTGAATCAAACCCTAGTTATTTGTG 58.971 37.037 0.00 0.00 34.19 3.33
2250 2399 8.472007 TTGAATCAAACCCTAGTTATTTGTGT 57.528 30.769 0.00 1.86 34.19 3.72
2251 2400 8.106247 TGAATCAAACCCTAGTTATTTGTGTC 57.894 34.615 9.26 8.58 34.19 3.67
2252 2401 7.721842 TGAATCAAACCCTAGTTATTTGTGTCA 59.278 33.333 9.26 10.20 34.19 3.58
2253 2402 6.870971 TCAAACCCTAGTTATTTGTGTCAC 57.129 37.500 0.00 0.00 34.19 3.67
2254 2403 6.597562 TCAAACCCTAGTTATTTGTGTCACT 58.402 36.000 4.27 0.00 34.19 3.41
2255 2404 6.708949 TCAAACCCTAGTTATTTGTGTCACTC 59.291 38.462 4.27 0.00 34.19 3.51
2256 2405 6.435292 AACCCTAGTTATTTGTGTCACTCT 57.565 37.500 4.27 0.00 33.27 3.24
2257 2406 7.549147 AACCCTAGTTATTTGTGTCACTCTA 57.451 36.000 4.27 0.00 33.27 2.43
2258 2407 6.932947 ACCCTAGTTATTTGTGTCACTCTAC 58.067 40.000 4.27 0.00 0.00 2.59
2259 2408 6.724905 ACCCTAGTTATTTGTGTCACTCTACT 59.275 38.462 4.27 3.83 0.00 2.57
2260 2409 7.234988 ACCCTAGTTATTTGTGTCACTCTACTT 59.765 37.037 4.27 0.00 0.00 2.24
2261 2410 7.760340 CCCTAGTTATTTGTGTCACTCTACTTC 59.240 40.741 4.27 0.00 0.00 3.01
2262 2411 7.485277 CCTAGTTATTTGTGTCACTCTACTTCG 59.515 40.741 4.27 0.00 0.00 3.79
2263 2412 5.634020 AGTTATTTGTGTCACTCTACTTCGC 59.366 40.000 4.27 0.00 0.00 4.70
2264 2413 3.728076 TTTGTGTCACTCTACTTCGCT 57.272 42.857 4.27 0.00 0.00 4.93
2265 2414 3.728076 TTGTGTCACTCTACTTCGCTT 57.272 42.857 4.27 0.00 0.00 4.68
2266 2415 3.284323 TGTGTCACTCTACTTCGCTTC 57.716 47.619 4.27 0.00 0.00 3.86
2267 2416 2.621526 TGTGTCACTCTACTTCGCTTCA 59.378 45.455 4.27 0.00 0.00 3.02
2268 2417 3.238441 GTGTCACTCTACTTCGCTTCAG 58.762 50.000 0.00 0.00 0.00 3.02
2269 2418 2.885266 TGTCACTCTACTTCGCTTCAGT 59.115 45.455 0.00 0.00 0.00 3.41
2270 2419 3.318275 TGTCACTCTACTTCGCTTCAGTT 59.682 43.478 0.00 0.00 0.00 3.16
2271 2420 3.915569 GTCACTCTACTTCGCTTCAGTTC 59.084 47.826 0.00 0.00 0.00 3.01
2272 2421 2.911723 CACTCTACTTCGCTTCAGTTCG 59.088 50.000 0.00 0.00 0.00 3.95
2273 2422 1.914700 CTCTACTTCGCTTCAGTTCGC 59.085 52.381 0.00 0.00 0.00 4.70
2274 2423 1.540267 TCTACTTCGCTTCAGTTCGCT 59.460 47.619 0.00 0.00 0.00 4.93
2275 2424 1.914700 CTACTTCGCTTCAGTTCGCTC 59.085 52.381 0.00 0.00 0.00 5.03
2276 2425 0.667792 ACTTCGCTTCAGTTCGCTCC 60.668 55.000 0.00 0.00 0.00 4.70
2277 2426 0.667487 CTTCGCTTCAGTTCGCTCCA 60.667 55.000 0.00 0.00 0.00 3.86
2278 2427 0.944311 TTCGCTTCAGTTCGCTCCAC 60.944 55.000 0.00 0.00 0.00 4.02
2279 2428 1.373497 CGCTTCAGTTCGCTCCACT 60.373 57.895 0.00 0.00 0.00 4.00
2280 2429 1.347817 CGCTTCAGTTCGCTCCACTC 61.348 60.000 0.00 0.00 0.00 3.51
2281 2430 0.037790 GCTTCAGTTCGCTCCACTCT 60.038 55.000 0.00 0.00 0.00 3.24
2282 2431 1.202582 GCTTCAGTTCGCTCCACTCTA 59.797 52.381 0.00 0.00 0.00 2.43
2283 2432 2.159170 GCTTCAGTTCGCTCCACTCTAT 60.159 50.000 0.00 0.00 0.00 1.98
2284 2433 3.701241 CTTCAGTTCGCTCCACTCTATC 58.299 50.000 0.00 0.00 0.00 2.08
2285 2434 2.025155 TCAGTTCGCTCCACTCTATCC 58.975 52.381 0.00 0.00 0.00 2.59
2286 2435 1.067821 CAGTTCGCTCCACTCTATCCC 59.932 57.143 0.00 0.00 0.00 3.85
2287 2436 1.063567 AGTTCGCTCCACTCTATCCCT 60.064 52.381 0.00 0.00 0.00 4.20
2288 2437 1.757699 GTTCGCTCCACTCTATCCCTT 59.242 52.381 0.00 0.00 0.00 3.95
2289 2438 1.693627 TCGCTCCACTCTATCCCTTC 58.306 55.000 0.00 0.00 0.00 3.46
2290 2439 0.676736 CGCTCCACTCTATCCCTTCC 59.323 60.000 0.00 0.00 0.00 3.46
2291 2440 1.052617 GCTCCACTCTATCCCTTCCC 58.947 60.000 0.00 0.00 0.00 3.97
2292 2441 1.692762 GCTCCACTCTATCCCTTCCCA 60.693 57.143 0.00 0.00 0.00 4.37
2293 2442 2.983296 CTCCACTCTATCCCTTCCCAT 58.017 52.381 0.00 0.00 0.00 4.00
2294 2443 2.903135 CTCCACTCTATCCCTTCCCATC 59.097 54.545 0.00 0.00 0.00 3.51
2295 2444 1.981495 CCACTCTATCCCTTCCCATCC 59.019 57.143 0.00 0.00 0.00 3.51
2296 2445 2.428484 CCACTCTATCCCTTCCCATCCT 60.428 54.545 0.00 0.00 0.00 3.24
2297 2446 3.321950 CACTCTATCCCTTCCCATCCTT 58.678 50.000 0.00 0.00 0.00 3.36
2298 2447 3.718956 CACTCTATCCCTTCCCATCCTTT 59.281 47.826 0.00 0.00 0.00 3.11
2299 2448 3.977326 ACTCTATCCCTTCCCATCCTTTC 59.023 47.826 0.00 0.00 0.00 2.62
2300 2449 4.238669 CTCTATCCCTTCCCATCCTTTCT 58.761 47.826 0.00 0.00 0.00 2.52
2301 2450 3.976654 TCTATCCCTTCCCATCCTTTCTG 59.023 47.826 0.00 0.00 0.00 3.02
2302 2451 2.359376 TCCCTTCCCATCCTTTCTGA 57.641 50.000 0.00 0.00 0.00 3.27
2303 2452 2.863884 TCCCTTCCCATCCTTTCTGAT 58.136 47.619 0.00 0.00 0.00 2.90
2304 2453 2.780010 TCCCTTCCCATCCTTTCTGATC 59.220 50.000 0.00 0.00 0.00 2.92
2305 2454 2.511218 CCCTTCCCATCCTTTCTGATCA 59.489 50.000 0.00 0.00 0.00 2.92
2306 2455 3.139770 CCCTTCCCATCCTTTCTGATCAT 59.860 47.826 0.00 0.00 0.00 2.45
2307 2456 4.396522 CCTTCCCATCCTTTCTGATCATC 58.603 47.826 0.00 0.00 0.00 2.92
2308 2457 4.104420 CCTTCCCATCCTTTCTGATCATCT 59.896 45.833 0.00 0.00 0.00 2.90
2309 2458 4.970860 TCCCATCCTTTCTGATCATCTC 57.029 45.455 0.00 0.00 0.00 2.75
2310 2459 3.649981 TCCCATCCTTTCTGATCATCTCC 59.350 47.826 0.00 0.00 0.00 3.71
2311 2460 3.556633 CCCATCCTTTCTGATCATCTCCG 60.557 52.174 0.00 0.00 0.00 4.63
2312 2461 3.556633 CCATCCTTTCTGATCATCTCCGG 60.557 52.174 0.00 0.00 0.00 5.14
2313 2462 1.414181 TCCTTTCTGATCATCTCCGGC 59.586 52.381 0.00 0.00 0.00 6.13
2314 2463 1.139654 CCTTTCTGATCATCTCCGGCA 59.860 52.381 0.00 0.00 0.00 5.69
2315 2464 2.224475 CCTTTCTGATCATCTCCGGCAT 60.224 50.000 0.00 0.00 0.00 4.40
2316 2465 2.538512 TTCTGATCATCTCCGGCATG 57.461 50.000 0.00 1.03 0.00 4.06
2317 2466 0.683412 TCTGATCATCTCCGGCATGG 59.317 55.000 11.98 0.00 40.09 3.66
2318 2467 0.954449 CTGATCATCTCCGGCATGGC 60.954 60.000 9.69 9.69 37.80 4.40
2319 2468 1.374190 GATCATCTCCGGCATGGCT 59.626 57.895 18.09 0.00 37.80 4.75
2320 2469 0.610174 GATCATCTCCGGCATGGCTA 59.390 55.000 18.09 4.35 37.80 3.93
2321 2470 0.612229 ATCATCTCCGGCATGGCTAG 59.388 55.000 18.09 14.09 37.80 3.42
2322 2471 0.760567 TCATCTCCGGCATGGCTAGT 60.761 55.000 18.09 3.35 37.80 2.57
2323 2472 0.969149 CATCTCCGGCATGGCTAGTA 59.031 55.000 18.09 0.67 37.80 1.82
2324 2473 1.067283 CATCTCCGGCATGGCTAGTAG 60.067 57.143 18.09 8.89 37.80 2.57
2325 2474 0.106167 TCTCCGGCATGGCTAGTAGT 60.106 55.000 18.09 0.00 37.80 2.73
2326 2475 0.032678 CTCCGGCATGGCTAGTAGTG 59.967 60.000 18.09 0.00 37.80 2.74
2327 2476 0.686441 TCCGGCATGGCTAGTAGTGT 60.686 55.000 18.09 0.00 37.80 3.55
2328 2477 1.037493 CCGGCATGGCTAGTAGTGTA 58.963 55.000 18.09 0.00 0.00 2.90
2329 2478 1.269621 CCGGCATGGCTAGTAGTGTAC 60.270 57.143 18.09 0.00 0.00 2.90
2330 2479 1.269621 CGGCATGGCTAGTAGTGTACC 60.270 57.143 18.09 0.00 0.00 3.34
2331 2480 2.040178 GGCATGGCTAGTAGTGTACCT 58.960 52.381 12.86 0.00 0.00 3.08
2332 2481 3.228453 GGCATGGCTAGTAGTGTACCTA 58.772 50.000 12.86 0.00 0.00 3.08
2333 2482 3.640029 GGCATGGCTAGTAGTGTACCTAA 59.360 47.826 12.86 0.00 0.00 2.69
2334 2483 4.262079 GGCATGGCTAGTAGTGTACCTAAG 60.262 50.000 12.86 0.00 0.00 2.18
2335 2484 4.341520 GCATGGCTAGTAGTGTACCTAAGT 59.658 45.833 0.00 0.00 0.00 2.24
2336 2485 5.507650 GCATGGCTAGTAGTGTACCTAAGTC 60.508 48.000 0.00 0.00 0.00 3.01
2337 2486 5.447778 TGGCTAGTAGTGTACCTAAGTCT 57.552 43.478 0.00 0.00 0.00 3.24
2338 2487 5.191426 TGGCTAGTAGTGTACCTAAGTCTG 58.809 45.833 0.00 0.00 0.00 3.51
2339 2488 5.045359 TGGCTAGTAGTGTACCTAAGTCTGA 60.045 44.000 0.00 0.00 0.00 3.27
2340 2489 6.063404 GGCTAGTAGTGTACCTAAGTCTGAT 58.937 44.000 0.00 0.00 0.00 2.90
2341 2490 6.546772 GGCTAGTAGTGTACCTAAGTCTGATT 59.453 42.308 0.00 0.00 0.00 2.57
2342 2491 7.419204 GCTAGTAGTGTACCTAAGTCTGATTG 58.581 42.308 0.00 0.00 0.00 2.67
2343 2492 7.282675 GCTAGTAGTGTACCTAAGTCTGATTGA 59.717 40.741 0.00 0.00 0.00 2.57
2344 2493 7.393841 AGTAGTGTACCTAAGTCTGATTGAC 57.606 40.000 0.00 0.00 45.67 3.18
2345 2494 5.662674 AGTGTACCTAAGTCTGATTGACC 57.337 43.478 0.00 0.00 46.46 4.02
2346 2495 5.334421 AGTGTACCTAAGTCTGATTGACCT 58.666 41.667 0.00 0.00 46.46 3.85
2347 2496 6.491383 AGTGTACCTAAGTCTGATTGACCTA 58.509 40.000 0.00 0.00 46.46 3.08
2348 2497 6.952358 AGTGTACCTAAGTCTGATTGACCTAA 59.048 38.462 0.00 0.00 46.46 2.69
2349 2498 7.453752 AGTGTACCTAAGTCTGATTGACCTAAA 59.546 37.037 0.00 0.00 46.46 1.85
2350 2499 8.092687 GTGTACCTAAGTCTGATTGACCTAAAA 58.907 37.037 0.00 0.00 46.46 1.52
2351 2500 8.092687 TGTACCTAAGTCTGATTGACCTAAAAC 58.907 37.037 0.00 0.00 46.46 2.43
2352 2501 7.317722 ACCTAAGTCTGATTGACCTAAAACT 57.682 36.000 0.00 0.00 46.46 2.66
2353 2502 7.162082 ACCTAAGTCTGATTGACCTAAAACTG 58.838 38.462 0.00 0.00 46.46 3.16
2354 2503 7.162082 CCTAAGTCTGATTGACCTAAAACTGT 58.838 38.462 0.00 0.00 46.46 3.55
2355 2504 7.332182 CCTAAGTCTGATTGACCTAAAACTGTC 59.668 40.741 0.00 0.00 46.46 3.51
2356 2505 5.230942 AGTCTGATTGACCTAAAACTGTCG 58.769 41.667 0.00 0.00 46.46 4.35
2357 2506 5.010719 AGTCTGATTGACCTAAAACTGTCGA 59.989 40.000 0.00 0.00 46.46 4.20
2358 2507 5.118817 GTCTGATTGACCTAAAACTGTCGAC 59.881 44.000 9.11 9.11 39.69 4.20
2359 2508 3.985279 TGATTGACCTAAAACTGTCGACG 59.015 43.478 11.62 8.41 34.18 5.12
2360 2509 2.427232 TGACCTAAAACTGTCGACGG 57.573 50.000 22.81 22.81 34.18 4.79
2361 2510 1.000060 TGACCTAAAACTGTCGACGGG 60.000 52.381 27.33 16.74 34.18 5.28
2362 2511 0.319405 ACCTAAAACTGTCGACGGGG 59.681 55.000 27.33 19.78 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 60 2.380410 GGCGCGGCAATAGGATACG 61.380 63.158 29.32 0.00 46.39 3.06
136 138 4.014569 TGTTTACAGTGATTAGCAGCCA 57.985 40.909 0.00 0.00 0.00 4.75
139 141 5.385617 GCACTTGTTTACAGTGATTAGCAG 58.614 41.667 0.00 0.00 35.75 4.24
140 142 4.084066 CGCACTTGTTTACAGTGATTAGCA 60.084 41.667 0.00 0.00 35.75 3.49
141 143 4.394795 CGCACTTGTTTACAGTGATTAGC 58.605 43.478 0.00 0.00 35.75 3.09
142 144 4.451096 ACCGCACTTGTTTACAGTGATTAG 59.549 41.667 0.00 0.00 35.75 1.73
143 145 4.382291 ACCGCACTTGTTTACAGTGATTA 58.618 39.130 0.00 0.00 35.75 1.75
144 146 3.211045 ACCGCACTTGTTTACAGTGATT 58.789 40.909 0.00 0.00 35.75 2.57
145 147 2.846193 ACCGCACTTGTTTACAGTGAT 58.154 42.857 0.00 0.00 35.75 3.06
146 148 2.319136 ACCGCACTTGTTTACAGTGA 57.681 45.000 0.00 0.00 35.75 3.41
163 165 5.179555 GTGGATTCTGGCGATATCTTTAACC 59.820 44.000 0.34 0.00 0.00 2.85
209 211 2.876079 GCTTGCCTAAGTTACTGTGCCT 60.876 50.000 0.00 0.00 36.27 4.75
263 273 2.026301 GCCTCGATCGAACCTCCG 59.974 66.667 19.92 6.04 0.00 4.63
271 282 2.736721 TGACTTTTCTTTGCCTCGATCG 59.263 45.455 9.36 9.36 0.00 3.69
301 314 5.182487 TGTTAATACACGATCCACATGCTT 58.818 37.500 0.00 0.00 0.00 3.91
391 418 1.146707 GTTAATTAGGGCGGCCGGA 59.853 57.895 29.38 15.67 0.00 5.14
396 423 0.745128 TGCGGTGTTAATTAGGGCGG 60.745 55.000 0.00 0.00 0.00 6.13
423 450 4.151417 CGAAGCAAATGGTTGGCG 57.849 55.556 2.09 0.00 35.69 5.69
463 491 5.106515 CGTCTCACTGACATGAAGAAGACTA 60.107 44.000 21.69 6.42 45.60 2.59
468 496 2.890945 TCCGTCTCACTGACATGAAGAA 59.109 45.455 0.00 0.00 45.60 2.52
474 502 1.746220 GTAGCTCCGTCTCACTGACAT 59.254 52.381 0.00 0.00 45.60 3.06
481 509 1.629043 ACAAAGGTAGCTCCGTCTCA 58.371 50.000 0.00 0.00 41.99 3.27
482 510 2.745515 AACAAAGGTAGCTCCGTCTC 57.254 50.000 0.00 0.00 41.99 3.36
484 512 2.269172 GCTAACAAAGGTAGCTCCGTC 58.731 52.381 6.81 0.00 41.99 4.79
486 514 2.000447 GTGCTAACAAAGGTAGCTCCG 59.000 52.381 14.42 0.00 41.99 4.63
487 515 2.000447 CGTGCTAACAAAGGTAGCTCC 59.000 52.381 14.42 5.26 37.69 4.70
488 516 2.000447 CCGTGCTAACAAAGGTAGCTC 59.000 52.381 14.42 10.17 37.69 4.09
489 517 1.338769 CCCGTGCTAACAAAGGTAGCT 60.339 52.381 14.42 0.00 37.69 3.32
490 518 1.084289 CCCGTGCTAACAAAGGTAGC 58.916 55.000 7.11 7.11 37.35 3.58
491 519 1.002773 ACCCCGTGCTAACAAAGGTAG 59.997 52.381 0.00 0.00 0.00 3.18
492 520 1.002315 GACCCCGTGCTAACAAAGGTA 59.998 52.381 0.00 0.00 0.00 3.08
493 521 0.250597 GACCCCGTGCTAACAAAGGT 60.251 55.000 0.00 0.00 0.00 3.50
494 522 0.250553 TGACCCCGTGCTAACAAAGG 60.251 55.000 0.00 0.00 0.00 3.11
495 523 1.600023 TTGACCCCGTGCTAACAAAG 58.400 50.000 0.00 0.00 0.00 2.77
496 524 2.279935 ATTGACCCCGTGCTAACAAA 57.720 45.000 0.00 0.00 0.00 2.83
497 525 1.883275 CAATTGACCCCGTGCTAACAA 59.117 47.619 0.00 0.00 0.00 2.83
498 526 1.072489 TCAATTGACCCCGTGCTAACA 59.928 47.619 3.38 0.00 0.00 2.41
499 527 1.467342 GTCAATTGACCCCGTGCTAAC 59.533 52.381 25.26 0.00 39.07 2.34
500 528 1.816074 GTCAATTGACCCCGTGCTAA 58.184 50.000 25.26 0.00 39.07 3.09
501 529 3.543884 GTCAATTGACCCCGTGCTA 57.456 52.632 25.26 0.00 39.07 3.49
502 530 4.397348 GTCAATTGACCCCGTGCT 57.603 55.556 25.26 0.00 39.07 4.40
510 538 4.824479 ATTTCATTGGGGGTCAATTGAC 57.176 40.909 27.16 27.16 43.04 3.18
511 539 5.104982 GCTAATTTCATTGGGGGTCAATTGA 60.105 40.000 3.38 3.38 43.04 2.57
512 540 5.118286 GCTAATTTCATTGGGGGTCAATTG 58.882 41.667 0.00 0.00 43.04 2.32
513 541 4.782156 TGCTAATTTCATTGGGGGTCAATT 59.218 37.500 0.00 0.00 43.04 2.32
514 542 4.360889 TGCTAATTTCATTGGGGGTCAAT 58.639 39.130 0.00 0.00 46.24 2.57
515 543 3.784178 TGCTAATTTCATTGGGGGTCAA 58.216 40.909 0.00 0.00 40.01 3.18
516 544 3.464720 TGCTAATTTCATTGGGGGTCA 57.535 42.857 0.00 0.00 0.00 4.02
517 545 4.023291 TCTTGCTAATTTCATTGGGGGTC 58.977 43.478 0.00 0.00 0.00 4.46
518 546 4.059773 TCTTGCTAATTTCATTGGGGGT 57.940 40.909 0.00 0.00 0.00 4.95
519 547 4.897670 AGATCTTGCTAATTTCATTGGGGG 59.102 41.667 0.00 0.00 0.00 5.40
520 548 6.097270 TGAAGATCTTGCTAATTTCATTGGGG 59.903 38.462 14.00 0.00 0.00 4.96
521 549 6.976925 GTGAAGATCTTGCTAATTTCATTGGG 59.023 38.462 14.00 0.00 0.00 4.12
522 550 7.769220 AGTGAAGATCTTGCTAATTTCATTGG 58.231 34.615 14.00 0.00 0.00 3.16
525 553 9.678260 AGTTAGTGAAGATCTTGCTAATTTCAT 57.322 29.630 21.91 10.62 0.00 2.57
562 590 9.314321 GGGGTCATGTTCTATAAATGTATATCG 57.686 37.037 0.00 0.00 0.00 2.92
564 592 9.959721 GTGGGGTCATGTTCTATAAATGTATAT 57.040 33.333 0.00 0.00 0.00 0.86
565 593 9.166222 AGTGGGGTCATGTTCTATAAATGTATA 57.834 33.333 0.00 0.00 0.00 1.47
566 594 7.939039 CAGTGGGGTCATGTTCTATAAATGTAT 59.061 37.037 0.00 0.00 0.00 2.29
567 595 7.092623 ACAGTGGGGTCATGTTCTATAAATGTA 60.093 37.037 0.00 0.00 0.00 2.29
568 596 6.122277 CAGTGGGGTCATGTTCTATAAATGT 58.878 40.000 0.00 0.00 0.00 2.71
569 597 6.122277 ACAGTGGGGTCATGTTCTATAAATG 58.878 40.000 0.00 0.00 0.00 2.32
570 598 6.069673 TGACAGTGGGGTCATGTTCTATAAAT 60.070 38.462 0.00 0.00 42.56 1.40
571 599 5.249622 TGACAGTGGGGTCATGTTCTATAAA 59.750 40.000 0.00 0.00 42.56 1.40
572 600 4.780554 TGACAGTGGGGTCATGTTCTATAA 59.219 41.667 0.00 0.00 42.56 0.98
573 601 4.358214 TGACAGTGGGGTCATGTTCTATA 58.642 43.478 0.00 0.00 42.56 1.31
574 602 3.181329 TGACAGTGGGGTCATGTTCTAT 58.819 45.455 0.00 0.00 42.56 1.98
575 603 2.615391 TGACAGTGGGGTCATGTTCTA 58.385 47.619 0.00 0.00 42.56 2.10
576 604 1.434188 TGACAGTGGGGTCATGTTCT 58.566 50.000 0.00 0.00 42.56 3.01
583 611 3.197766 TCATGTTCTATGACAGTGGGGTC 59.802 47.826 0.00 0.00 38.29 4.46
584 612 3.055094 GTCATGTTCTATGACAGTGGGGT 60.055 47.826 13.50 0.00 45.61 4.95
585 613 3.535561 GTCATGTTCTATGACAGTGGGG 58.464 50.000 13.50 0.00 45.61 4.96
592 620 3.914426 AGTGGGGTCATGTTCTATGAC 57.086 47.619 10.70 10.70 45.59 3.06
593 621 4.141711 GCTTAGTGGGGTCATGTTCTATGA 60.142 45.833 0.00 0.00 0.00 2.15
594 622 4.130118 GCTTAGTGGGGTCATGTTCTATG 58.870 47.826 0.00 0.00 0.00 2.23
595 623 4.040755 AGCTTAGTGGGGTCATGTTCTAT 58.959 43.478 0.00 0.00 0.00 1.98
596 624 3.450904 AGCTTAGTGGGGTCATGTTCTA 58.549 45.455 0.00 0.00 0.00 2.10
597 625 2.269940 AGCTTAGTGGGGTCATGTTCT 58.730 47.619 0.00 0.00 0.00 3.01
598 626 2.789409 AGCTTAGTGGGGTCATGTTC 57.211 50.000 0.00 0.00 0.00 3.18
599 627 4.862641 AATAGCTTAGTGGGGTCATGTT 57.137 40.909 0.00 0.00 0.00 2.71
600 628 4.862641 AAATAGCTTAGTGGGGTCATGT 57.137 40.909 0.00 0.00 0.00 3.21
620 648 5.296780 CCTCACTCACAGACAAAGCTAAAAA 59.703 40.000 0.00 0.00 0.00 1.94
621 649 4.816385 CCTCACTCACAGACAAAGCTAAAA 59.184 41.667 0.00 0.00 0.00 1.52
622 650 4.380531 CCTCACTCACAGACAAAGCTAAA 58.619 43.478 0.00 0.00 0.00 1.85
623 651 3.244215 CCCTCACTCACAGACAAAGCTAA 60.244 47.826 0.00 0.00 0.00 3.09
624 652 2.300152 CCCTCACTCACAGACAAAGCTA 59.700 50.000 0.00 0.00 0.00 3.32
625 653 1.071385 CCCTCACTCACAGACAAAGCT 59.929 52.381 0.00 0.00 0.00 3.74
626 654 1.202698 ACCCTCACTCACAGACAAAGC 60.203 52.381 0.00 0.00 0.00 3.51
627 655 2.918712 ACCCTCACTCACAGACAAAG 57.081 50.000 0.00 0.00 0.00 2.77
628 656 3.278574 CAAACCCTCACTCACAGACAAA 58.721 45.455 0.00 0.00 0.00 2.83
629 657 2.917933 CAAACCCTCACTCACAGACAA 58.082 47.619 0.00 0.00 0.00 3.18
630 658 1.475034 GCAAACCCTCACTCACAGACA 60.475 52.381 0.00 0.00 0.00 3.41
631 659 1.202698 AGCAAACCCTCACTCACAGAC 60.203 52.381 0.00 0.00 0.00 3.51
632 660 1.131638 AGCAAACCCTCACTCACAGA 58.868 50.000 0.00 0.00 0.00 3.41
633 661 1.605710 CAAGCAAACCCTCACTCACAG 59.394 52.381 0.00 0.00 0.00 3.66
634 662 1.064758 ACAAGCAAACCCTCACTCACA 60.065 47.619 0.00 0.00 0.00 3.58
635 663 1.680338 ACAAGCAAACCCTCACTCAC 58.320 50.000 0.00 0.00 0.00 3.51
636 664 2.092429 AGAACAAGCAAACCCTCACTCA 60.092 45.455 0.00 0.00 0.00 3.41
637 665 2.576615 AGAACAAGCAAACCCTCACTC 58.423 47.619 0.00 0.00 0.00 3.51
638 666 2.736670 AGAACAAGCAAACCCTCACT 57.263 45.000 0.00 0.00 0.00 3.41
639 667 5.453567 AATAAGAACAAGCAAACCCTCAC 57.546 39.130 0.00 0.00 0.00 3.51
699 727 4.617253 ATCCTTGCACTACTACACACAA 57.383 40.909 0.00 0.00 0.00 3.33
700 728 4.617253 AATCCTTGCACTACTACACACA 57.383 40.909 0.00 0.00 0.00 3.72
701 729 4.091509 CGAAATCCTTGCACTACTACACAC 59.908 45.833 0.00 0.00 0.00 3.82
723 751 3.853307 GCAATGACTGACTTTTCAACCCG 60.853 47.826 0.00 0.00 0.00 5.28
724 752 3.552890 GGCAATGACTGACTTTTCAACCC 60.553 47.826 0.00 0.00 0.00 4.11
819 849 2.860735 GGCTGCAGTGTAGTTAAGATCG 59.139 50.000 16.64 0.00 0.00 3.69
844 887 1.228215 TCGACGTGTGGGGTAGTGA 60.228 57.895 0.00 0.00 0.00 3.41
861 904 0.304705 CTTGTGCTTGTGTGTCCGTC 59.695 55.000 0.00 0.00 0.00 4.79
862 905 0.107897 TCTTGTGCTTGTGTGTCCGT 60.108 50.000 0.00 0.00 0.00 4.69
863 906 0.583438 CTCTTGTGCTTGTGTGTCCG 59.417 55.000 0.00 0.00 0.00 4.79
864 907 0.308993 GCTCTTGTGCTTGTGTGTCC 59.691 55.000 0.00 0.00 0.00 4.02
940 983 1.539929 GGGTCGACGCTACTAGCTAGA 60.540 57.143 27.45 9.90 39.60 2.43
1027 1070 2.397252 GACGATGAGCGCAAGTGC 59.603 61.111 11.47 0.00 46.04 4.40
1028 1071 2.691522 CGACGATGAGCGCAAGTG 59.308 61.111 11.47 0.00 46.04 3.16
1103 1146 3.088941 TAATCCTCCGCTGCCCACG 62.089 63.158 0.00 0.00 0.00 4.94
1218 1261 3.612681 TAGCCGATGTAGCCGCCC 61.613 66.667 0.00 0.00 0.00 6.13
1408 1470 0.909623 ATCCTACAAGAACCACCGGG 59.090 55.000 6.32 0.00 41.29 5.73
1463 1526 3.005897 CACCGACTGGAAGAAGAAGAAGA 59.994 47.826 0.00 0.00 39.21 2.87
1474 1537 1.348064 ACAAGGATCACCGACTGGAA 58.652 50.000 0.00 0.00 41.83 3.53
1478 1541 1.271379 CCCAAACAAGGATCACCGACT 60.271 52.381 0.00 0.00 41.83 4.18
1484 1547 3.320610 TGAAACCCCAAACAAGGATCA 57.679 42.857 0.00 0.00 0.00 2.92
1486 1549 6.382859 GGTATAATGAAACCCCAAACAAGGAT 59.617 38.462 0.00 0.00 0.00 3.24
1488 1551 5.393678 CGGTATAATGAAACCCCAAACAAGG 60.394 44.000 0.00 0.00 31.68 3.61
1560 1625 5.056480 TCGATACATTGCCTCCAATTACAG 58.944 41.667 0.00 0.00 39.60 2.74
1602 1667 5.106948 ACAGCTCAAACGAATCAGTAACATG 60.107 40.000 0.00 0.00 0.00 3.21
1622 1687 0.099968 TACCGATCGCACAGTACAGC 59.900 55.000 10.32 0.00 0.00 4.40
1637 1702 7.020010 CGTAGCAGTAATACTCCTATTTACCG 58.980 42.308 0.00 0.00 0.00 4.02
1659 1788 5.771469 TCTGAACTCGATTAAAACACCGTA 58.229 37.500 0.00 0.00 0.00 4.02
1908 2041 5.041287 GGCTCAAACAAAACACTAAAGTCC 58.959 41.667 0.00 0.00 0.00 3.85
2044 2177 1.742880 GCAGTTGCAGATGCTCCGA 60.743 57.895 15.72 0.00 42.66 4.55
2060 2196 3.508786 TAGGGGGAAGTGGGGTGCA 62.509 63.158 0.00 0.00 0.00 4.57
2069 2205 2.491022 CCGAGCGTCTAGGGGGAAG 61.491 68.421 0.00 0.00 0.00 3.46
2072 2208 3.217743 GTCCGAGCGTCTAGGGGG 61.218 72.222 6.26 0.00 0.00 5.40
2086 2222 4.215399 TGTTTTTGGATTCAGACGATGTCC 59.785 41.667 0.00 0.00 32.18 4.02
2087 2223 5.356882 TGTTTTTGGATTCAGACGATGTC 57.643 39.130 0.00 0.00 0.00 3.06
2113 2262 0.179056 CCCACGTATAGGCTGTTGGG 60.179 60.000 5.25 5.25 0.00 4.12
2123 2272 2.901192 CCACATATCCACCCCACGTATA 59.099 50.000 0.00 0.00 0.00 1.47
2155 2304 2.019951 GACGAACATGTCCGCGTGT 61.020 57.895 21.03 0.00 45.96 4.49
2166 2315 0.678950 TCTGTCCAGCATGACGAACA 59.321 50.000 0.00 0.00 39.69 3.18
2167 2316 1.071605 GTCTGTCCAGCATGACGAAC 58.928 55.000 0.00 0.00 39.69 3.95
2168 2317 0.037326 GGTCTGTCCAGCATGACGAA 60.037 55.000 0.00 0.00 39.69 3.85
2172 2321 0.543277 GATGGGTCTGTCCAGCATGA 59.457 55.000 0.00 0.00 42.34 3.07
2177 2326 0.457851 GTCGAGATGGGTCTGTCCAG 59.542 60.000 0.00 0.00 40.56 3.86
2205 2354 0.764752 GGAGGGGATTGGGACGAGAT 60.765 60.000 0.00 0.00 0.00 2.75
2206 2355 1.382695 GGAGGGGATTGGGACGAGA 60.383 63.158 0.00 0.00 0.00 4.04
2207 2356 0.983378 AAGGAGGGGATTGGGACGAG 60.983 60.000 0.00 0.00 0.00 4.18
2208 2357 1.082206 AAGGAGGGGATTGGGACGA 59.918 57.895 0.00 0.00 0.00 4.20
2209 2358 1.224592 CAAGGAGGGGATTGGGACG 59.775 63.158 0.00 0.00 0.00 4.79
2210 2359 0.999712 TTCAAGGAGGGGATTGGGAC 59.000 55.000 0.00 0.00 0.00 4.46
2211 2360 1.852965 GATTCAAGGAGGGGATTGGGA 59.147 52.381 0.00 0.00 0.00 4.37
2212 2361 1.570501 TGATTCAAGGAGGGGATTGGG 59.429 52.381 0.00 0.00 0.00 4.12
2213 2362 3.386932 TTGATTCAAGGAGGGGATTGG 57.613 47.619 0.00 0.00 0.00 3.16
2214 2363 3.448660 GGTTTGATTCAAGGAGGGGATTG 59.551 47.826 0.00 0.00 0.00 2.67
2215 2364 3.566553 GGGTTTGATTCAAGGAGGGGATT 60.567 47.826 0.00 0.00 0.00 3.01
2216 2365 2.023984 GGGTTTGATTCAAGGAGGGGAT 60.024 50.000 0.00 0.00 0.00 3.85
2217 2366 1.357761 GGGTTTGATTCAAGGAGGGGA 59.642 52.381 0.00 0.00 0.00 4.81
2218 2367 1.359130 AGGGTTTGATTCAAGGAGGGG 59.641 52.381 0.00 0.00 0.00 4.79
2219 2368 2.907458 AGGGTTTGATTCAAGGAGGG 57.093 50.000 0.00 0.00 0.00 4.30
2220 2369 4.576330 ACTAGGGTTTGATTCAAGGAGG 57.424 45.455 0.00 0.00 0.00 4.30
2221 2370 8.462016 CAAATAACTAGGGTTTGATTCAAGGAG 58.538 37.037 9.74 0.00 35.43 3.69
2222 2371 7.947890 ACAAATAACTAGGGTTTGATTCAAGGA 59.052 33.333 17.91 0.00 36.58 3.36
2223 2372 8.028938 CACAAATAACTAGGGTTTGATTCAAGG 58.971 37.037 17.91 0.00 36.58 3.61
2224 2373 8.576442 ACACAAATAACTAGGGTTTGATTCAAG 58.424 33.333 17.91 0.00 36.58 3.02
2225 2374 8.472007 ACACAAATAACTAGGGTTTGATTCAA 57.528 30.769 17.91 0.00 36.58 2.69
2226 2375 7.721842 TGACACAAATAACTAGGGTTTGATTCA 59.278 33.333 17.91 15.61 36.58 2.57
2227 2376 8.021396 GTGACACAAATAACTAGGGTTTGATTC 58.979 37.037 17.91 14.08 36.58 2.52
2228 2377 7.724061 AGTGACACAAATAACTAGGGTTTGATT 59.276 33.333 17.91 8.25 36.58 2.57
2229 2378 7.231467 AGTGACACAAATAACTAGGGTTTGAT 58.769 34.615 17.91 9.33 36.58 2.57
2230 2379 6.597562 AGTGACACAAATAACTAGGGTTTGA 58.402 36.000 17.91 0.36 36.58 2.69
2231 2380 6.710744 AGAGTGACACAAATAACTAGGGTTTG 59.289 38.462 8.59 12.40 38.46 2.93
2232 2381 6.838382 AGAGTGACACAAATAACTAGGGTTT 58.162 36.000 8.59 0.00 36.92 3.27
2233 2382 6.435292 AGAGTGACACAAATAACTAGGGTT 57.565 37.500 8.59 0.00 39.26 4.11
2234 2383 6.724905 AGTAGAGTGACACAAATAACTAGGGT 59.275 38.462 8.59 0.00 0.00 4.34
2235 2384 7.171630 AGTAGAGTGACACAAATAACTAGGG 57.828 40.000 8.59 0.00 0.00 3.53
2236 2385 7.485277 CGAAGTAGAGTGACACAAATAACTAGG 59.515 40.741 8.59 0.00 0.00 3.02
2237 2386 7.008447 GCGAAGTAGAGTGACACAAATAACTAG 59.992 40.741 8.59 0.00 0.00 2.57
2238 2387 6.805271 GCGAAGTAGAGTGACACAAATAACTA 59.195 38.462 8.59 0.00 0.00 2.24
2239 2388 5.634020 GCGAAGTAGAGTGACACAAATAACT 59.366 40.000 8.59 1.23 0.00 2.24
2240 2389 5.634020 AGCGAAGTAGAGTGACACAAATAAC 59.366 40.000 8.59 0.00 0.00 1.89
2241 2390 5.779922 AGCGAAGTAGAGTGACACAAATAA 58.220 37.500 8.59 0.00 0.00 1.40
2242 2391 5.386958 AGCGAAGTAGAGTGACACAAATA 57.613 39.130 8.59 0.00 0.00 1.40
2243 2392 4.258702 AGCGAAGTAGAGTGACACAAAT 57.741 40.909 8.59 0.00 0.00 2.32
2244 2393 3.728076 AGCGAAGTAGAGTGACACAAA 57.272 42.857 8.59 0.00 0.00 2.83
2245 2394 3.067601 TGAAGCGAAGTAGAGTGACACAA 59.932 43.478 8.59 0.00 0.00 3.33
2246 2395 2.621526 TGAAGCGAAGTAGAGTGACACA 59.378 45.455 8.59 0.00 0.00 3.72
2247 2396 3.238441 CTGAAGCGAAGTAGAGTGACAC 58.762 50.000 0.00 0.00 0.00 3.67
2248 2397 2.885266 ACTGAAGCGAAGTAGAGTGACA 59.115 45.455 0.00 0.00 0.00 3.58
2249 2398 3.562567 ACTGAAGCGAAGTAGAGTGAC 57.437 47.619 0.00 0.00 0.00 3.67
2250 2399 3.365064 CGAACTGAAGCGAAGTAGAGTGA 60.365 47.826 0.00 0.00 0.00 3.41
2251 2400 2.911723 CGAACTGAAGCGAAGTAGAGTG 59.088 50.000 0.00 0.00 0.00 3.51
2252 2401 2.668834 GCGAACTGAAGCGAAGTAGAGT 60.669 50.000 0.00 0.00 0.00 3.24
2253 2402 1.914700 GCGAACTGAAGCGAAGTAGAG 59.085 52.381 0.00 0.00 0.00 2.43
2254 2403 1.540267 AGCGAACTGAAGCGAAGTAGA 59.460 47.619 0.00 0.00 38.61 2.59
2255 2404 1.914700 GAGCGAACTGAAGCGAAGTAG 59.085 52.381 0.00 0.00 38.61 2.57
2256 2405 1.402456 GGAGCGAACTGAAGCGAAGTA 60.402 52.381 0.00 0.00 38.61 2.24
2257 2406 0.667792 GGAGCGAACTGAAGCGAAGT 60.668 55.000 0.00 0.00 38.61 3.01
2258 2407 0.667487 TGGAGCGAACTGAAGCGAAG 60.667 55.000 0.00 0.00 38.61 3.79
2259 2408 0.944311 GTGGAGCGAACTGAAGCGAA 60.944 55.000 0.00 0.00 38.61 4.70
2260 2409 1.372997 GTGGAGCGAACTGAAGCGA 60.373 57.895 0.00 0.00 38.61 4.93
2261 2410 1.347817 GAGTGGAGCGAACTGAAGCG 61.348 60.000 0.00 0.00 38.61 4.68
2262 2411 0.037790 AGAGTGGAGCGAACTGAAGC 60.038 55.000 0.00 0.00 0.00 3.86
2263 2412 3.490078 GGATAGAGTGGAGCGAACTGAAG 60.490 52.174 0.00 0.00 0.00 3.02
2264 2413 2.427453 GGATAGAGTGGAGCGAACTGAA 59.573 50.000 0.00 0.00 0.00 3.02
2265 2414 2.025155 GGATAGAGTGGAGCGAACTGA 58.975 52.381 0.00 0.00 0.00 3.41
2266 2415 1.067821 GGGATAGAGTGGAGCGAACTG 59.932 57.143 0.00 0.00 0.00 3.16
2267 2416 1.063567 AGGGATAGAGTGGAGCGAACT 60.064 52.381 0.00 0.00 0.00 3.01
2268 2417 1.404843 AGGGATAGAGTGGAGCGAAC 58.595 55.000 0.00 0.00 0.00 3.95
2269 2418 2.032620 GAAGGGATAGAGTGGAGCGAA 58.967 52.381 0.00 0.00 0.00 4.70
2270 2419 1.693627 GAAGGGATAGAGTGGAGCGA 58.306 55.000 0.00 0.00 0.00 4.93
2271 2420 0.676736 GGAAGGGATAGAGTGGAGCG 59.323 60.000 0.00 0.00 0.00 5.03
2272 2421 1.052617 GGGAAGGGATAGAGTGGAGC 58.947 60.000 0.00 0.00 0.00 4.70
2273 2422 2.478872 TGGGAAGGGATAGAGTGGAG 57.521 55.000 0.00 0.00 0.00 3.86
2274 2423 2.427889 GGATGGGAAGGGATAGAGTGGA 60.428 54.545 0.00 0.00 0.00 4.02
2275 2424 1.981495 GGATGGGAAGGGATAGAGTGG 59.019 57.143 0.00 0.00 0.00 4.00
2276 2425 2.983296 AGGATGGGAAGGGATAGAGTG 58.017 52.381 0.00 0.00 0.00 3.51
2277 2426 3.734344 AAGGATGGGAAGGGATAGAGT 57.266 47.619 0.00 0.00 0.00 3.24
2278 2427 4.041444 CAGAAAGGATGGGAAGGGATAGAG 59.959 50.000 0.00 0.00 0.00 2.43
2279 2428 3.976654 CAGAAAGGATGGGAAGGGATAGA 59.023 47.826 0.00 0.00 0.00 1.98
2280 2429 3.976654 TCAGAAAGGATGGGAAGGGATAG 59.023 47.826 0.00 0.00 0.00 2.08
2281 2430 4.021007 TCAGAAAGGATGGGAAGGGATA 57.979 45.455 0.00 0.00 0.00 2.59
2282 2431 2.863884 TCAGAAAGGATGGGAAGGGAT 58.136 47.619 0.00 0.00 0.00 3.85
2283 2432 2.359376 TCAGAAAGGATGGGAAGGGA 57.641 50.000 0.00 0.00 0.00 4.20
2284 2433 2.511218 TGATCAGAAAGGATGGGAAGGG 59.489 50.000 0.00 0.00 0.00 3.95
2285 2434 3.939740 TGATCAGAAAGGATGGGAAGG 57.060 47.619 0.00 0.00 0.00 3.46
2286 2435 5.307204 GAGATGATCAGAAAGGATGGGAAG 58.693 45.833 0.09 0.00 0.00 3.46
2287 2436 4.103785 GGAGATGATCAGAAAGGATGGGAA 59.896 45.833 0.09 0.00 0.00 3.97
2288 2437 3.649981 GGAGATGATCAGAAAGGATGGGA 59.350 47.826 0.09 0.00 0.00 4.37
2289 2438 3.556633 CGGAGATGATCAGAAAGGATGGG 60.557 52.174 0.09 0.00 0.00 4.00
2290 2439 3.556633 CCGGAGATGATCAGAAAGGATGG 60.557 52.174 0.00 0.00 0.00 3.51
2291 2440 3.661944 CCGGAGATGATCAGAAAGGATG 58.338 50.000 0.00 0.00 0.00 3.51
2292 2441 2.038295 GCCGGAGATGATCAGAAAGGAT 59.962 50.000 5.05 0.00 0.00 3.24
2293 2442 1.414181 GCCGGAGATGATCAGAAAGGA 59.586 52.381 5.05 0.00 0.00 3.36
2294 2443 1.139654 TGCCGGAGATGATCAGAAAGG 59.860 52.381 5.05 2.22 0.00 3.11
2295 2444 2.609427 TGCCGGAGATGATCAGAAAG 57.391 50.000 5.05 0.00 0.00 2.62
2296 2445 2.486013 CCATGCCGGAGATGATCAGAAA 60.486 50.000 5.05 0.00 36.56 2.52
2297 2446 1.071228 CCATGCCGGAGATGATCAGAA 59.929 52.381 5.05 0.00 36.56 3.02
2298 2447 0.683412 CCATGCCGGAGATGATCAGA 59.317 55.000 5.05 0.00 36.56 3.27
2299 2448 0.954449 GCCATGCCGGAGATGATCAG 60.954 60.000 5.05 0.00 36.56 2.90
2300 2449 1.071987 GCCATGCCGGAGATGATCA 59.928 57.895 5.05 0.00 36.56 2.92
2301 2450 0.610174 TAGCCATGCCGGAGATGATC 59.390 55.000 5.05 2.06 36.56 2.92
2302 2451 0.612229 CTAGCCATGCCGGAGATGAT 59.388 55.000 5.05 1.39 36.56 2.45
2303 2452 0.760567 ACTAGCCATGCCGGAGATGA 60.761 55.000 5.05 0.00 36.56 2.92
2304 2453 0.969149 TACTAGCCATGCCGGAGATG 59.031 55.000 5.05 6.24 36.56 2.90
2305 2454 1.261480 CTACTAGCCATGCCGGAGAT 58.739 55.000 5.05 0.00 36.56 2.75
2306 2455 0.106167 ACTACTAGCCATGCCGGAGA 60.106 55.000 5.05 0.00 36.56 3.71
2307 2456 0.032678 CACTACTAGCCATGCCGGAG 59.967 60.000 5.05 0.00 36.56 4.63
2308 2457 0.686441 ACACTACTAGCCATGCCGGA 60.686 55.000 5.05 0.00 36.56 5.14
2309 2458 1.037493 TACACTACTAGCCATGCCGG 58.963 55.000 0.00 0.00 38.11 6.13
2310 2459 1.269621 GGTACACTACTAGCCATGCCG 60.270 57.143 0.00 0.00 0.00 5.69
2311 2460 2.040178 AGGTACACTACTAGCCATGCC 58.960 52.381 0.00 0.00 0.00 4.40
2312 2461 4.341520 ACTTAGGTACACTACTAGCCATGC 59.658 45.833 0.00 0.00 0.00 4.06
2313 2462 5.828859 AGACTTAGGTACACTACTAGCCATG 59.171 44.000 0.00 0.00 0.00 3.66
2314 2463 5.828859 CAGACTTAGGTACACTACTAGCCAT 59.171 44.000 0.00 0.00 0.00 4.40
2315 2464 5.045359 TCAGACTTAGGTACACTACTAGCCA 60.045 44.000 0.00 0.00 0.00 4.75
2316 2465 5.435291 TCAGACTTAGGTACACTACTAGCC 58.565 45.833 0.00 0.00 0.00 3.93
2317 2466 7.282675 TCAATCAGACTTAGGTACACTACTAGC 59.717 40.741 0.00 0.00 0.00 3.42
2318 2467 8.614346 GTCAATCAGACTTAGGTACACTACTAG 58.386 40.741 0.00 0.00 44.09 2.57
2319 2468 7.555554 GGTCAATCAGACTTAGGTACACTACTA 59.444 40.741 0.00 0.00 46.72 1.82
2320 2469 6.377712 GGTCAATCAGACTTAGGTACACTACT 59.622 42.308 0.00 0.00 46.72 2.57
2321 2470 6.377712 AGGTCAATCAGACTTAGGTACACTAC 59.622 42.308 0.00 0.00 46.72 2.73
2322 2471 6.491383 AGGTCAATCAGACTTAGGTACACTA 58.509 40.000 0.00 0.00 46.72 2.74
2323 2472 5.334421 AGGTCAATCAGACTTAGGTACACT 58.666 41.667 0.00 0.00 46.72 3.55
2324 2473 5.662674 AGGTCAATCAGACTTAGGTACAC 57.337 43.478 0.00 0.00 46.72 2.90
2325 2474 7.786046 TTTAGGTCAATCAGACTTAGGTACA 57.214 36.000 0.00 0.00 46.72 2.90
2326 2475 8.312564 AGTTTTAGGTCAATCAGACTTAGGTAC 58.687 37.037 0.00 0.00 46.72 3.34
2327 2476 8.311836 CAGTTTTAGGTCAATCAGACTTAGGTA 58.688 37.037 0.00 0.00 46.72 3.08
2328 2477 7.162082 CAGTTTTAGGTCAATCAGACTTAGGT 58.838 38.462 0.00 0.00 46.72 3.08
2329 2478 7.162082 ACAGTTTTAGGTCAATCAGACTTAGG 58.838 38.462 0.00 0.00 46.72 2.69
2330 2479 7.062371 CGACAGTTTTAGGTCAATCAGACTTAG 59.938 40.741 0.00 0.00 46.72 2.18
2331 2480 6.866770 CGACAGTTTTAGGTCAATCAGACTTA 59.133 38.462 0.00 0.00 46.72 2.24
2332 2481 5.696724 CGACAGTTTTAGGTCAATCAGACTT 59.303 40.000 0.00 0.00 46.72 3.01
2333 2482 5.010719 TCGACAGTTTTAGGTCAATCAGACT 59.989 40.000 0.00 0.00 46.72 3.24
2334 2483 5.118817 GTCGACAGTTTTAGGTCAATCAGAC 59.881 44.000 11.55 0.00 46.83 3.51
2335 2484 5.227908 GTCGACAGTTTTAGGTCAATCAGA 58.772 41.667 11.55 0.00 33.66 3.27
2336 2485 4.090066 CGTCGACAGTTTTAGGTCAATCAG 59.910 45.833 17.16 0.00 33.66 2.90
2337 2486 3.985279 CGTCGACAGTTTTAGGTCAATCA 59.015 43.478 17.16 0.00 33.66 2.57
2338 2487 3.367025 CCGTCGACAGTTTTAGGTCAATC 59.633 47.826 17.16 0.00 33.66 2.67
2339 2488 3.323243 CCGTCGACAGTTTTAGGTCAAT 58.677 45.455 17.16 0.00 33.66 2.57
2340 2489 2.546373 CCCGTCGACAGTTTTAGGTCAA 60.546 50.000 17.16 0.00 33.66 3.18
2341 2490 1.000060 CCCGTCGACAGTTTTAGGTCA 60.000 52.381 17.16 0.00 33.66 4.02
2342 2491 1.670967 CCCCGTCGACAGTTTTAGGTC 60.671 57.143 17.16 0.00 0.00 3.85
2343 2492 0.319405 CCCCGTCGACAGTTTTAGGT 59.681 55.000 17.16 0.00 0.00 3.08
2344 2493 3.132863 CCCCGTCGACAGTTTTAGG 57.867 57.895 17.16 6.39 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.