Multiple sequence alignment - TraesCS3A01G451300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G451300 chr3A 100.000 2427 0 0 1 2427 689517411 689519837 0.000000e+00 4482.0
1 TraesCS3A01G451300 chr3A 79.695 197 37 3 2077 2272 7779871 7780065 3.250000e-29 139.0
2 TraesCS3A01G451300 chr3A 100.000 42 0 0 1908 1949 689519288 689519329 7.190000e-11 78.7
3 TraesCS3A01G451300 chr3A 100.000 42 0 0 1878 1919 689519318 689519359 7.190000e-11 78.7
4 TraesCS3A01G451300 chr3A 97.619 42 1 0 2065 2106 689519401 689519442 3.350000e-09 73.1
5 TraesCS3A01G451300 chr3A 97.619 42 1 0 1991 2032 689519475 689519516 3.350000e-09 73.1
6 TraesCS3A01G451300 chr3B 86.604 1605 119 35 848 2427 734495176 734496709 0.000000e+00 1685.0
7 TraesCS3A01G451300 chr3B 83.882 850 94 19 848 1677 734492440 734493266 0.000000e+00 771.0
8 TraesCS3A01G451300 chr3B 90.576 382 20 8 1 369 734490439 734490817 2.170000e-135 492.0
9 TraesCS3A01G451300 chr3B 79.149 470 65 20 848 1309 734598140 734598584 6.560000e-76 294.0
10 TraesCS3A01G451300 chr3B 92.617 149 9 2 372 518 734490872 734491020 1.890000e-51 213.0
11 TraesCS3A01G451300 chr3B 79.558 181 33 3 2067 2245 444119734 444119556 2.530000e-25 126.0
12 TraesCS3A01G451300 chr3D 92.057 768 46 5 848 1603 553336765 553337529 0.000000e+00 1066.0
13 TraesCS3A01G451300 chr3D 89.574 470 41 5 848 1309 553323467 553323936 7.470000e-165 590.0
14 TraesCS3A01G451300 chr3D 89.306 346 20 8 1 333 553311795 553312136 3.730000e-113 418.0
15 TraesCS3A01G451300 chr3D 85.151 431 34 8 848 1273 553315214 553315619 4.830000e-112 414.0
16 TraesCS3A01G451300 chr3D 100.000 35 0 0 390 424 553312141 553312175 5.600000e-07 65.8
17 TraesCS3A01G451300 chr5D 82.278 158 25 3 2067 2222 55732345 55732501 1.510000e-27 134.0
18 TraesCS3A01G451300 chr7A 92.135 89 4 3 708 794 47919692 47919779 3.280000e-24 122.0
19 TraesCS3A01G451300 chr7B 79.006 181 33 4 2077 2255 141877563 141877386 4.240000e-23 119.0
20 TraesCS3A01G451300 chr5B 77.049 183 31 4 2127 2309 5433547 5433376 7.140000e-16 95.3
21 TraesCS3A01G451300 chr5B 93.220 59 4 0 2187 2245 51219739 51219797 1.200000e-13 87.9
22 TraesCS3A01G451300 chr5B 89.474 57 6 0 2184 2240 51331940 51331996 3.350000e-09 73.1
23 TraesCS3A01G451300 chr4B 96.364 55 2 0 795 849 602406166 602406112 9.240000e-15 91.6
24 TraesCS3A01G451300 chrUn 74.886 219 42 6 2093 2309 79184809 79184602 1.200000e-13 87.9
25 TraesCS3A01G451300 chr1A 86.207 58 2 5 1 52 446514984 446515041 9.370000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G451300 chr3A 689517411 689519837 2426 False 957.120000 4482 99.047600 1 2427 5 chr3A.!!$F2 2426
1 TraesCS3A01G451300 chr3B 734490439 734496709 6270 False 790.250000 1685 88.419750 1 2427 4 chr3B.!!$F2 2426
2 TraesCS3A01G451300 chr3D 553336765 553337529 764 False 1066.000000 1066 92.057000 848 1603 1 chr3D.!!$F2 755
3 TraesCS3A01G451300 chr3D 553311795 553315619 3824 False 299.266667 418 91.485667 1 1273 3 chr3D.!!$F3 1272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 2984 0.108662 GCGGAAAATGCAAAGGGAGG 60.109 55.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 7999 0.031994 GCTGACGGTTGCCAAAACAT 59.968 50.0 0.0 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 241 7.654022 AAACTGTAATGGAAAAACAAGGAGA 57.346 32.000 0.00 0.00 0.00 3.71
340 353 6.706716 AGCAAGAAGTAAAAGAAGTGGTAGTC 59.293 38.462 0.00 0.00 0.00 2.59
369 382 9.778741 CATAACAGGTTATGTATCCAGTACAAT 57.221 33.333 19.28 0.00 45.87 2.71
431 496 3.806949 AAGCTGGAGGTATTTGGTTCA 57.193 42.857 0.00 0.00 0.00 3.18
454 519 1.507141 CTCGGGTTGCGCAATATCCC 61.507 60.000 28.79 28.79 35.22 3.85
506 573 1.600636 CCGAGCCCAAGACAAAGCA 60.601 57.895 0.00 0.00 0.00 3.91
518 585 7.417342 GCCCAAGACAAAGCATATAATAACCAA 60.417 37.037 0.00 0.00 0.00 3.67
519 586 7.920682 CCCAAGACAAAGCATATAATAACCAAC 59.079 37.037 0.00 0.00 0.00 3.77
520 587 8.686334 CCAAGACAAAGCATATAATAACCAACT 58.314 33.333 0.00 0.00 0.00 3.16
521 588 9.722056 CAAGACAAAGCATATAATAACCAACTC 57.278 33.333 0.00 0.00 0.00 3.01
522 589 8.451908 AGACAAAGCATATAATAACCAACTCC 57.548 34.615 0.00 0.00 0.00 3.85
523 590 8.275040 AGACAAAGCATATAATAACCAACTCCT 58.725 33.333 0.00 0.00 0.00 3.69
524 591 9.555727 GACAAAGCATATAATAACCAACTCCTA 57.444 33.333 0.00 0.00 0.00 2.94
528 595 9.871238 AAGCATATAATAACCAACTCCTATACG 57.129 33.333 0.00 0.00 0.00 3.06
529 596 8.475639 AGCATATAATAACCAACTCCTATACGG 58.524 37.037 0.00 0.00 0.00 4.02
530 597 8.255905 GCATATAATAACCAACTCCTATACGGT 58.744 37.037 0.00 0.00 0.00 4.83
531 598 9.582431 CATATAATAACCAACTCCTATACGGTG 57.418 37.037 0.00 0.00 0.00 4.94
532 599 5.945144 AATAACCAACTCCTATACGGTGT 57.055 39.130 0.00 0.00 41.11 4.16
534 601 4.628963 AACCAACTCCTATACGGTGTTT 57.371 40.909 0.00 0.00 44.78 2.83
535 602 5.743636 AACCAACTCCTATACGGTGTTTA 57.256 39.130 0.00 0.00 44.78 2.01
536 603 5.945144 ACCAACTCCTATACGGTGTTTAT 57.055 39.130 0.00 0.00 44.78 1.40
537 604 7.422465 AACCAACTCCTATACGGTGTTTATA 57.578 36.000 0.00 0.00 44.78 0.98
538 605 7.607615 ACCAACTCCTATACGGTGTTTATAT 57.392 36.000 0.00 0.00 44.78 0.86
539 606 7.439381 ACCAACTCCTATACGGTGTTTATATG 58.561 38.462 0.00 0.00 44.78 1.78
540 607 7.288389 ACCAACTCCTATACGGTGTTTATATGA 59.712 37.037 0.00 0.00 44.78 2.15
541 608 8.311836 CCAACTCCTATACGGTGTTTATATGAT 58.688 37.037 0.00 0.00 44.78 2.45
542 609 9.706691 CAACTCCTATACGGTGTTTATATGATT 57.293 33.333 0.00 0.00 44.78 2.57
605 1209 6.660887 CAAGCTCTTTGGTAGAAGATTCTC 57.339 41.667 0.00 0.00 35.27 2.87
606 1210 5.004922 AGCTCTTTGGTAGAAGATTCTCG 57.995 43.478 0.00 0.00 38.70 4.04
607 1211 4.707448 AGCTCTTTGGTAGAAGATTCTCGA 59.293 41.667 0.00 0.00 38.70 4.04
608 1212 5.186021 AGCTCTTTGGTAGAAGATTCTCGAA 59.814 40.000 0.00 0.00 38.70 3.71
609 1213 5.869888 GCTCTTTGGTAGAAGATTCTCGAAA 59.130 40.000 0.00 1.55 38.70 3.46
610 1214 6.369065 GCTCTTTGGTAGAAGATTCTCGAAAA 59.631 38.462 0.00 0.00 38.70 2.29
611 1215 7.095187 GCTCTTTGGTAGAAGATTCTCGAAAAA 60.095 37.037 0.00 0.00 38.70 1.94
641 1327 4.544152 TCTTTGGTAGAAATCCCCAATCCT 59.456 41.667 3.76 0.00 38.02 3.24
678 1364 4.411256 TTTTTCTAACCGGACTCACACT 57.589 40.909 9.46 0.00 0.00 3.55
726 1698 8.287439 TGAAATATACAACCCAATAACAGTGG 57.713 34.615 0.00 0.00 35.77 4.00
727 1699 6.709018 AATATACAACCCAATAACAGTGGC 57.291 37.500 0.00 0.00 34.56 5.01
728 1700 1.243902 ACAACCCAATAACAGTGGCG 58.756 50.000 0.00 0.00 34.56 5.69
729 1701 0.109319 CAACCCAATAACAGTGGCGC 60.109 55.000 0.00 0.00 34.56 6.53
731 1703 0.538516 ACCCAATAACAGTGGCGCAA 60.539 50.000 10.83 0.00 34.56 4.85
734 1706 1.402720 CCAATAACAGTGGCGCAAAGG 60.403 52.381 10.83 0.00 0.00 3.11
735 1707 0.887933 AATAACAGTGGCGCAAAGGG 59.112 50.000 10.83 0.00 0.00 3.95
736 1708 1.595093 ATAACAGTGGCGCAAAGGGC 61.595 55.000 10.83 0.00 40.84 5.19
756 1728 3.068881 ACCCTCACGGTGTCCATG 58.931 61.111 8.17 0.00 46.09 3.66
757 1729 1.841556 ACCCTCACGGTGTCCATGT 60.842 57.895 8.17 0.00 46.09 3.21
758 1730 1.079127 CCCTCACGGTGTCCATGTC 60.079 63.158 8.17 0.00 0.00 3.06
764 2936 0.684535 ACGGTGTCCATGTCATCACA 59.315 50.000 5.72 0.00 36.78 3.58
775 2947 3.651803 TGTCATCACATGTGTACGACA 57.348 42.857 27.90 27.90 39.53 4.35
778 2950 4.811557 TGTCATCACATGTGTACGACAAAA 59.188 37.500 28.72 16.10 38.36 2.44
808 2980 1.339711 CGAAGCGGAAAATGCAAAGG 58.660 50.000 0.00 0.00 33.85 3.11
812 2984 0.108662 GCGGAAAATGCAAAGGGAGG 60.109 55.000 0.00 0.00 0.00 4.30
813 2985 0.108662 CGGAAAATGCAAAGGGAGGC 60.109 55.000 0.00 0.00 0.00 4.70
815 2987 0.108662 GAAAATGCAAAGGGAGGCCG 60.109 55.000 0.00 0.00 0.00 6.13
816 2988 0.541764 AAAATGCAAAGGGAGGCCGA 60.542 50.000 0.00 0.00 0.00 5.54
817 2989 0.967380 AAATGCAAAGGGAGGCCGAG 60.967 55.000 0.00 0.00 0.00 4.63
819 2991 4.722700 GCAAAGGGAGGCCGAGCA 62.723 66.667 0.00 0.00 0.00 4.26
823 2995 2.262774 AAAGGGAGGCCGAGCATCAG 62.263 60.000 11.57 0.00 41.39 2.90
824 2996 4.247380 GGGAGGCCGAGCATCAGG 62.247 72.222 11.57 0.00 41.39 3.86
834 3006 4.664062 GCATCAGGCAGGGCTTTA 57.336 55.556 0.00 0.00 43.97 1.85
835 3007 3.122369 GCATCAGGCAGGGCTTTAT 57.878 52.632 0.00 0.00 43.97 1.40
836 3008 0.957362 GCATCAGGCAGGGCTTTATC 59.043 55.000 0.00 0.00 43.97 1.75
837 3009 1.478288 GCATCAGGCAGGGCTTTATCT 60.478 52.381 0.00 0.00 43.97 1.98
839 3011 2.425143 TCAGGCAGGGCTTTATCTTG 57.575 50.000 0.00 0.00 0.00 3.02
840 3012 1.635487 TCAGGCAGGGCTTTATCTTGT 59.365 47.619 0.00 0.00 0.00 3.16
841 3013 2.019984 CAGGCAGGGCTTTATCTTGTC 58.980 52.381 0.00 0.00 0.00 3.18
842 3014 1.064389 AGGCAGGGCTTTATCTTGTCC 60.064 52.381 0.00 0.00 0.00 4.02
843 3015 1.017387 GCAGGGCTTTATCTTGTCCG 58.983 55.000 0.00 0.00 32.36 4.79
850 4371 4.272748 GGGCTTTATCTTGTCCGTTCATAC 59.727 45.833 0.00 0.00 0.00 2.39
854 4375 2.754946 TCTTGTCCGTTCATACCCAC 57.245 50.000 0.00 0.00 0.00 4.61
887 4408 3.505836 CCACATCGATATCCATCTCACG 58.494 50.000 0.00 0.00 0.00 4.35
894 4415 3.611549 CGATATCCATCTCACGCATTCAG 59.388 47.826 0.00 0.00 0.00 3.02
949 4470 2.035193 CGGATGAGTTCACATCGATCCT 59.965 50.000 0.00 0.00 45.07 3.24
1032 4559 3.604400 GCACAGTTGTTTGCTGCG 58.396 55.556 0.00 0.00 37.47 5.18
1033 4560 2.579574 GCACAGTTGTTTGCTGCGC 61.580 57.895 0.00 0.00 37.47 6.09
1035 4562 1.064621 ACAGTTGTTTGCTGCGCTG 59.935 52.632 9.73 10.04 37.47 5.18
1071 4598 5.587844 GCTCATCATGATCCACAGTAAGTTT 59.412 40.000 4.86 0.00 0.00 2.66
1073 4600 7.280876 GCTCATCATGATCCACAGTAAGTTTAA 59.719 37.037 4.86 0.00 0.00 1.52
1110 7356 1.315690 CATGCCCATCCTGTTGCTAG 58.684 55.000 0.00 0.00 0.00 3.42
1113 7359 1.912731 TGCCCATCCTGTTGCTAGTTA 59.087 47.619 0.00 0.00 0.00 2.24
1186 7432 4.467084 GCGGAGGCGGTTCATCCA 62.467 66.667 0.00 0.00 45.63 3.41
1314 7560 6.039493 TGCTCACGTAAAGGGATTGTTAAAAA 59.961 34.615 0.00 0.00 0.00 1.94
1344 7590 6.502136 TTGTGAATGTACCATAAAATGCGA 57.498 33.333 0.00 0.00 0.00 5.10
1484 7741 1.737838 TGCGTCTCCATGGAAATGTC 58.262 50.000 17.00 5.41 0.00 3.06
1502 7759 8.244113 GGAAATGTCCATTTTGTAAGGAACTAG 58.756 37.037 6.70 0.00 44.26 2.57
1506 7763 6.934645 TGTCCATTTTGTAAGGAACTAGACAG 59.065 38.462 0.00 0.00 38.49 3.51
1508 7765 6.271391 TCCATTTTGTAAGGAACTAGACAGGA 59.729 38.462 0.00 0.00 38.49 3.86
1520 7777 6.461648 GGAACTAGACAGGAATCATTGATCGA 60.462 42.308 0.00 0.00 0.00 3.59
1544 7801 9.632969 CGAATGAAAATAATTTGTAGTACCGAG 57.367 33.333 0.00 0.00 0.00 4.63
1567 7825 9.974750 CGAGACAATAATAAGAAAACCTCTTTC 57.025 33.333 0.00 0.00 41.97 2.62
1587 7845 4.908601 TCATTTGAGACTTGCCTAAGGA 57.091 40.909 0.00 0.00 38.26 3.36
1604 7862 2.842457 AGGAACTTGTGGTCGGTTTAC 58.158 47.619 0.00 0.00 27.25 2.01
1627 7886 2.100631 CCGTCTCGGTTGCCATGAC 61.101 63.158 0.00 0.00 42.73 3.06
1635 7894 2.890311 TCGGTTGCCATGACTTCATTTT 59.110 40.909 0.00 0.00 33.61 1.82
1645 7904 8.196771 TGCCATGACTTCATTTTTCATATTACC 58.803 33.333 0.00 0.00 33.61 2.85
1681 7940 6.551227 TGCTATCATATATCGTATCAAGCCCT 59.449 38.462 0.00 0.00 0.00 5.19
1687 7946 8.977412 TCATATATCGTATCAAGCCCTCAATTA 58.023 33.333 0.00 0.00 0.00 1.40
1701 7960 1.933181 TCAATTATCAGCGCTTGGTCG 59.067 47.619 7.50 0.00 0.00 4.79
1706 7965 2.564553 ATCAGCGCTTGGTCGTCCTC 62.565 60.000 7.50 0.00 34.23 3.71
1730 7989 2.052690 CGTGACCATCGACCTCCCT 61.053 63.158 0.00 0.00 0.00 4.20
1732 7991 1.381327 TGACCATCGACCTCCCTCC 60.381 63.158 0.00 0.00 0.00 4.30
1734 7993 2.844839 CCATCGACCTCCCTCCCC 60.845 72.222 0.00 0.00 0.00 4.81
1735 7994 2.283809 CATCGACCTCCCTCCCCT 59.716 66.667 0.00 0.00 0.00 4.79
1738 7997 2.354755 ATCGACCTCCCTCCCCTACG 62.355 65.000 0.00 0.00 0.00 3.51
1739 7998 3.013631 GACCTCCCTCCCCTACGA 58.986 66.667 0.00 0.00 0.00 3.43
1740 7999 1.309006 GACCTCCCTCCCCTACGAA 59.691 63.158 0.00 0.00 0.00 3.85
1741 8000 0.105607 GACCTCCCTCCCCTACGAAT 60.106 60.000 0.00 0.00 0.00 3.34
1746 8005 2.238898 CTCCCTCCCCTACGAATGTTTT 59.761 50.000 0.00 0.00 0.00 2.43
1754 8013 2.580589 CTACGAATGTTTTGGCAACCG 58.419 47.619 0.00 0.00 0.00 4.44
1764 8023 0.250510 TTGGCAACCGTCAGCATGTA 60.251 50.000 0.00 0.00 37.40 2.29
1783 8042 0.105593 AGACGTCCTGCATAGCATGG 59.894 55.000 13.01 0.00 38.13 3.66
1785 8044 0.179073 ACGTCCTGCATAGCATGGTC 60.179 55.000 0.00 0.00 38.13 4.02
1854 8113 1.152860 ACCGTTGTCCATGTTGGCA 60.153 52.632 0.00 0.00 37.47 4.92
1866 8125 3.283684 TTGGCAAACGCTGGTCGG 61.284 61.111 0.00 0.00 43.86 4.79
1873 8132 3.842925 AACGCTGGTCGGCCATGTT 62.843 57.895 10.40 15.38 45.05 2.71
1888 8147 1.135660 CATGTTGCTGAGAGCTTGCTG 60.136 52.381 0.00 0.00 42.97 4.41
1895 8154 1.004080 GAGAGCTTGCTGGCAGTCA 60.004 57.895 17.16 11.74 34.17 3.41
1901 8160 0.820891 CTTGCTGGCAGTCACCAACT 60.821 55.000 17.16 0.00 39.86 3.16
1907 8166 1.507141 GGCAGTCACCAACTTCACCG 61.507 60.000 0.00 0.00 35.45 4.94
1908 8167 0.531974 GCAGTCACCAACTTCACCGA 60.532 55.000 0.00 0.00 35.45 4.69
1909 8168 1.502231 CAGTCACCAACTTCACCGAG 58.498 55.000 0.00 0.00 35.45 4.63
1910 8169 1.068588 CAGTCACCAACTTCACCGAGA 59.931 52.381 0.00 0.00 35.45 4.04
1911 8170 1.341531 AGTCACCAACTTCACCGAGAG 59.658 52.381 0.00 0.00 33.03 3.20
1912 8171 0.033504 TCACCAACTTCACCGAGAGC 59.966 55.000 0.00 0.00 0.00 4.09
1913 8172 0.034059 CACCAACTTCACCGAGAGCT 59.966 55.000 0.00 0.00 0.00 4.09
1914 8173 0.759346 ACCAACTTCACCGAGAGCTT 59.241 50.000 0.00 0.00 0.00 3.74
1915 8174 1.151668 CCAACTTCACCGAGAGCTTG 58.848 55.000 0.00 0.00 0.00 4.01
1916 8175 0.514691 CAACTTCACCGAGAGCTTGC 59.485 55.000 0.00 0.00 0.00 4.01
1917 8176 0.394565 AACTTCACCGAGAGCTTGCT 59.605 50.000 0.00 0.00 0.00 3.91
1918 8177 0.320247 ACTTCACCGAGAGCTTGCTG 60.320 55.000 0.00 0.00 0.00 4.41
1919 8178 1.004560 TTCACCGAGAGCTTGCTGG 60.005 57.895 0.00 0.00 0.00 4.85
1920 8179 3.123620 CACCGAGAGCTTGCTGGC 61.124 66.667 0.00 0.00 0.00 4.85
1921 8180 3.630013 ACCGAGAGCTTGCTGGCA 61.630 61.111 0.00 0.00 34.17 4.92
1922 8181 2.818714 CCGAGAGCTTGCTGGCAG 60.819 66.667 10.94 10.94 34.17 4.85
1923 8182 2.047465 CGAGAGCTTGCTGGCAGT 60.047 61.111 17.16 0.00 34.17 4.40
1924 8183 2.099431 CGAGAGCTTGCTGGCAGTC 61.099 63.158 17.16 9.10 34.17 3.51
1925 8184 1.004080 GAGAGCTTGCTGGCAGTCA 60.004 57.895 17.16 11.74 34.17 3.41
1926 8185 1.297456 GAGAGCTTGCTGGCAGTCAC 61.297 60.000 17.16 3.67 34.17 3.67
1927 8186 2.282040 AGCTTGCTGGCAGTCACC 60.282 61.111 17.16 8.18 34.17 4.02
1928 8187 2.595463 GCTTGCTGGCAGTCACCA 60.595 61.111 17.16 2.07 38.29 4.17
1929 8188 2.195567 GCTTGCTGGCAGTCACCAA 61.196 57.895 17.16 10.43 39.86 3.67
1930 8189 1.656441 CTTGCTGGCAGTCACCAAC 59.344 57.895 17.16 0.00 39.86 3.77
1931 8190 0.820891 CTTGCTGGCAGTCACCAACT 60.821 55.000 17.16 0.00 39.86 3.16
1932 8191 0.395586 TTGCTGGCAGTCACCAACTT 60.396 50.000 17.16 0.00 39.86 2.66
1933 8192 0.819259 TGCTGGCAGTCACCAACTTC 60.819 55.000 17.16 0.00 39.86 3.01
1934 8193 0.819259 GCTGGCAGTCACCAACTTCA 60.819 55.000 17.16 0.00 39.86 3.02
1935 8194 0.947244 CTGGCAGTCACCAACTTCAC 59.053 55.000 6.28 0.00 39.86 3.18
1936 8195 0.465460 TGGCAGTCACCAACTTCACC 60.465 55.000 0.00 0.00 36.55 4.02
1943 8202 0.034059 CACCAACTTCACCGAGAGCT 59.966 55.000 0.00 0.00 0.00 4.09
1983 8242 5.052370 GCCGCGAGTGATTTTGAATTTATTC 60.052 40.000 8.23 0.00 37.31 1.75
1995 8254 4.520078 TGAATTTATTCGGCGCGATTAAC 58.480 39.130 12.10 0.00 39.62 2.01
2001 8260 2.461110 CGGCGCGATTAACTGCCTT 61.461 57.895 12.10 0.00 45.36 4.35
2004 8263 1.090052 GCGCGATTAACTGCCTTCCT 61.090 55.000 12.10 0.00 0.00 3.36
2008 8267 3.184581 CGCGATTAACTGCCTTCCTAATC 59.815 47.826 0.00 0.00 0.00 1.75
2019 8278 8.593945 ACTGCCTTCCTAATCAATTAATTTCA 57.406 30.769 0.00 0.00 0.00 2.69
2063 8335 5.362263 CATGCTTTATTAATTGCCTGCCTT 58.638 37.500 0.00 0.00 0.00 4.35
2064 8336 6.514947 CATGCTTTATTAATTGCCTGCCTTA 58.485 36.000 0.00 0.00 0.00 2.69
2065 8337 6.729690 TGCTTTATTAATTGCCTGCCTTAT 57.270 33.333 0.00 0.00 0.00 1.73
2066 8338 7.123355 TGCTTTATTAATTGCCTGCCTTATT 57.877 32.000 0.00 0.00 0.00 1.40
2067 8339 8.243961 TGCTTTATTAATTGCCTGCCTTATTA 57.756 30.769 0.00 0.00 0.00 0.98
2068 8340 8.700051 TGCTTTATTAATTGCCTGCCTTATTAA 58.300 29.630 0.00 0.00 0.00 1.40
2069 8341 9.710900 GCTTTATTAATTGCCTGCCTTATTAAT 57.289 29.630 0.00 13.55 37.14 1.40
2072 8344 7.967890 ATTAATTGCCTGCCTTATTAATTGC 57.032 32.000 0.00 0.00 32.20 3.56
2073 8345 3.817709 TTGCCTGCCTTATTAATTGCC 57.182 42.857 0.00 0.00 0.00 4.52
2074 8346 3.030873 TGCCTGCCTTATTAATTGCCT 57.969 42.857 0.00 0.00 0.00 4.75
2075 8347 3.373830 TGCCTGCCTTATTAATTGCCTT 58.626 40.909 0.00 0.00 0.00 4.35
2076 8348 3.384467 TGCCTGCCTTATTAATTGCCTTC 59.616 43.478 0.00 0.00 0.00 3.46
2077 8349 3.243873 GCCTGCCTTATTAATTGCCTTCC 60.244 47.826 0.00 0.00 0.00 3.46
2078 8350 4.218312 CCTGCCTTATTAATTGCCTTCCT 58.782 43.478 0.00 0.00 0.00 3.36
2082 8354 7.309438 CCTGCCTTATTAATTGCCTTCCTAATC 60.309 40.741 0.00 0.00 0.00 1.75
2210 8485 5.914898 ATTGTAGTAATGGCTTGGTTTCC 57.085 39.130 0.00 0.00 0.00 3.13
2212 8487 4.730966 TGTAGTAATGGCTTGGTTTCCAA 58.269 39.130 1.25 1.25 41.69 3.53
2213 8488 5.141182 TGTAGTAATGGCTTGGTTTCCAAA 58.859 37.500 2.85 0.00 43.44 3.28
2214 8489 5.777732 TGTAGTAATGGCTTGGTTTCCAAAT 59.222 36.000 2.85 0.00 43.44 2.32
2215 8490 5.823861 AGTAATGGCTTGGTTTCCAAATT 57.176 34.783 2.85 3.24 43.44 1.82
2216 8491 5.550290 AGTAATGGCTTGGTTTCCAAATTG 58.450 37.500 2.85 0.00 43.44 2.32
2217 8492 4.703379 AATGGCTTGGTTTCCAAATTGA 57.297 36.364 0.00 0.00 43.44 2.57
2218 8493 4.914177 ATGGCTTGGTTTCCAAATTGAT 57.086 36.364 0.00 0.00 43.44 2.57
2219 8494 4.703379 TGGCTTGGTTTCCAAATTGATT 57.297 36.364 0.00 0.00 43.44 2.57
2220 8495 4.640364 TGGCTTGGTTTCCAAATTGATTC 58.360 39.130 0.00 0.00 43.44 2.52
2221 8496 3.679502 GGCTTGGTTTCCAAATTGATTCG 59.320 43.478 0.00 0.00 43.44 3.34
2222 8497 3.679502 GCTTGGTTTCCAAATTGATTCGG 59.320 43.478 0.00 0.00 43.44 4.30
2229 8504 2.230992 TCCAAATTGATTCGGTGCTTGG 59.769 45.455 0.00 0.00 34.44 3.61
2234 8509 3.907894 TTGATTCGGTGCTTGGTTTAC 57.092 42.857 0.00 0.00 0.00 2.01
2245 8520 7.711339 TCGGTGCTTGGTTTACAAATTATTTTT 59.289 29.630 0.00 0.00 38.91 1.94
2272 8547 2.753989 TGAATGTGTGCAAACGACTG 57.246 45.000 1.78 0.00 0.00 3.51
2323 8598 2.821546 TGATATTTGTCTTCGAGGCGG 58.178 47.619 0.00 0.00 0.00 6.13
2324 8599 2.429250 TGATATTTGTCTTCGAGGCGGA 59.571 45.455 0.00 0.00 0.00 5.54
2332 8607 0.319383 CTTCGAGGCGGATGATCCAG 60.319 60.000 12.67 5.66 35.91 3.86
2355 8630 0.604243 AGCTCGACTCGACACTCACT 60.604 55.000 0.00 0.00 0.00 3.41
2357 8632 1.957089 CTCGACTCGACACTCACTTG 58.043 55.000 0.00 0.00 0.00 3.16
2417 8693 5.277345 CCGGTCATAAAAGAGCCGAAATTAG 60.277 44.000 2.66 0.00 44.57 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 8.731605 TCCAAAATACGCAAACATTTACAGATA 58.268 29.630 0.00 0.00 0.00 1.98
127 128 9.046296 ACATTTTCCAAAATACGCAAACATTTA 57.954 25.926 0.00 0.00 36.52 1.40
249 250 3.502191 TTTTATGCATGGTTTCCGCTC 57.498 42.857 10.16 0.00 0.00 5.03
278 279 5.449588 GGTTCAGATCTGCATGGTGTTTATG 60.450 44.000 18.36 0.00 0.00 1.90
279 280 4.641989 GGTTCAGATCTGCATGGTGTTTAT 59.358 41.667 18.36 0.00 0.00 1.40
280 281 4.009675 GGTTCAGATCTGCATGGTGTTTA 58.990 43.478 18.36 0.00 0.00 2.01
388 453 4.425180 TTTCCTAACACAGTTACCAGCA 57.575 40.909 0.00 0.00 0.00 4.41
431 496 1.745232 TATTGCGCAACCCGAGATTT 58.255 45.000 27.64 8.78 40.02 2.17
497 564 8.275040 AGGAGTTGGTTATTATATGCTTTGTCT 58.725 33.333 0.00 0.00 0.00 3.41
506 573 9.317827 ACACCGTATAGGAGTTGGTTATTATAT 57.682 33.333 0.00 0.00 41.13 0.86
551 618 1.376812 CTGCTTCGGTACAACCCCC 60.377 63.158 0.00 0.00 33.75 5.40
552 619 0.391263 CTCTGCTTCGGTACAACCCC 60.391 60.000 0.00 0.00 33.75 4.95
553 620 1.019805 GCTCTGCTTCGGTACAACCC 61.020 60.000 0.00 0.00 33.75 4.11
554 621 0.037232 AGCTCTGCTTCGGTACAACC 60.037 55.000 0.00 0.00 33.89 3.77
555 622 1.336887 TGAGCTCTGCTTCGGTACAAC 60.337 52.381 16.19 0.00 39.88 3.32
556 623 0.966179 TGAGCTCTGCTTCGGTACAA 59.034 50.000 16.19 0.00 39.88 2.41
567 974 0.663688 GCTTGGCATCATGAGCTCTG 59.336 55.000 16.19 10.75 32.54 3.35
612 1216 6.140377 TGGGGATTTCTACCAAAGAGTTTTT 58.860 36.000 0.00 0.00 35.05 1.94
613 1217 5.711698 TGGGGATTTCTACCAAAGAGTTTT 58.288 37.500 0.00 0.00 35.05 2.43
614 1218 5.333566 TGGGGATTTCTACCAAAGAGTTT 57.666 39.130 0.00 0.00 35.05 2.66
615 1219 5.333566 TTGGGGATTTCTACCAAAGAGTT 57.666 39.130 0.00 0.00 41.02 3.01
616 1220 5.510430 GATTGGGGATTTCTACCAAAGAGT 58.490 41.667 9.97 0.00 46.30 3.24
617 1221 4.889995 GGATTGGGGATTTCTACCAAAGAG 59.110 45.833 9.97 0.00 46.30 2.85
618 1222 4.544152 AGGATTGGGGATTTCTACCAAAGA 59.456 41.667 9.97 0.00 46.30 2.52
619 1223 4.871822 AGGATTGGGGATTTCTACCAAAG 58.128 43.478 9.97 0.00 46.30 2.77
620 1224 4.965283 AGGATTGGGGATTTCTACCAAA 57.035 40.909 9.97 0.00 46.30 3.28
622 1226 4.412199 CAGTAGGATTGGGGATTTCTACCA 59.588 45.833 0.00 0.00 31.11 3.25
623 1227 4.747009 GCAGTAGGATTGGGGATTTCTACC 60.747 50.000 0.00 0.00 31.11 3.18
624 1228 4.103311 AGCAGTAGGATTGGGGATTTCTAC 59.897 45.833 0.00 0.00 0.00 2.59
661 1347 1.542492 GGAGTGTGAGTCCGGTTAGA 58.458 55.000 0.00 0.00 0.00 2.10
669 1355 7.923414 AATTAATGTAAAGGGAGTGTGAGTC 57.077 36.000 0.00 0.00 0.00 3.36
671 1357 7.611855 AGGAAATTAATGTAAAGGGAGTGTGAG 59.388 37.037 0.00 0.00 0.00 3.51
709 1681 1.243902 CGCCACTGTTATTGGGTTGT 58.756 50.000 0.00 0.00 34.35 3.32
712 1684 0.538516 TTGCGCCACTGTTATTGGGT 60.539 50.000 4.18 0.00 34.35 4.51
713 1685 0.600557 TTTGCGCCACTGTTATTGGG 59.399 50.000 4.18 0.00 34.35 4.12
714 1686 1.402720 CCTTTGCGCCACTGTTATTGG 60.403 52.381 4.18 0.00 37.17 3.16
742 1714 1.066929 TGATGACATGGACACCGTGAG 60.067 52.381 15.60 0.00 42.73 3.51
743 1715 0.972883 TGATGACATGGACACCGTGA 59.027 50.000 15.60 0.00 42.73 4.35
745 1717 0.684535 TGTGATGACATGGACACCGT 59.315 50.000 0.00 0.00 33.08 4.83
746 1718 2.028420 ATGTGATGACATGGACACCG 57.972 50.000 0.00 0.00 41.52 4.94
755 1727 3.651803 TGTCGTACACATGTGATGACA 57.348 42.857 30.17 30.17 35.91 3.58
756 1728 4.983215 TTTGTCGTACACATGTGATGAC 57.017 40.909 31.94 29.03 33.90 3.06
757 1729 5.993106 TTTTTGTCGTACACATGTGATGA 57.007 34.783 31.94 21.06 33.90 2.92
778 2950 2.040544 CCGCTTCGCCATCCACTTT 61.041 57.895 0.00 0.00 0.00 2.66
781 2953 1.582610 TTTTCCGCTTCGCCATCCAC 61.583 55.000 0.00 0.00 0.00 4.02
782 2954 0.679640 ATTTTCCGCTTCGCCATCCA 60.680 50.000 0.00 0.00 0.00 3.41
783 2955 0.248621 CATTTTCCGCTTCGCCATCC 60.249 55.000 0.00 0.00 0.00 3.51
784 2956 0.867329 GCATTTTCCGCTTCGCCATC 60.867 55.000 0.00 0.00 0.00 3.51
785 2957 1.139520 GCATTTTCCGCTTCGCCAT 59.860 52.632 0.00 0.00 0.00 4.40
786 2958 1.800283 TTGCATTTTCCGCTTCGCCA 61.800 50.000 0.00 0.00 0.00 5.69
787 2959 0.665972 TTTGCATTTTCCGCTTCGCC 60.666 50.000 0.00 0.00 0.00 5.54
788 2960 0.710017 CTTTGCATTTTCCGCTTCGC 59.290 50.000 0.00 0.00 0.00 4.70
790 2962 1.272212 TCCCTTTGCATTTTCCGCTTC 59.728 47.619 0.00 0.00 0.00 3.86
794 2966 0.108662 GCCTCCCTTTGCATTTTCCG 60.109 55.000 0.00 0.00 0.00 4.30
796 2968 0.108662 CGGCCTCCCTTTGCATTTTC 60.109 55.000 0.00 0.00 0.00 2.29
797 2969 0.541764 TCGGCCTCCCTTTGCATTTT 60.542 50.000 0.00 0.00 0.00 1.82
798 2970 0.967380 CTCGGCCTCCCTTTGCATTT 60.967 55.000 0.00 0.00 0.00 2.32
801 2973 4.722700 GCTCGGCCTCCCTTTGCA 62.723 66.667 0.00 0.00 0.00 4.08
803 2975 1.821332 GATGCTCGGCCTCCCTTTG 60.821 63.158 0.00 0.00 0.00 2.77
804 2976 2.262774 CTGATGCTCGGCCTCCCTTT 62.263 60.000 0.00 0.00 0.00 3.11
806 2978 3.160047 CTGATGCTCGGCCTCCCT 61.160 66.667 0.00 0.00 0.00 4.20
807 2979 4.247380 CCTGATGCTCGGCCTCCC 62.247 72.222 0.00 0.00 0.00 4.30
808 2980 4.925861 GCCTGATGCTCGGCCTCC 62.926 72.222 0.00 0.00 40.43 4.30
815 2987 0.107017 TAAAGCCCTGCCTGATGCTC 60.107 55.000 0.00 0.00 42.00 4.26
816 2988 0.554792 ATAAAGCCCTGCCTGATGCT 59.445 50.000 0.00 0.00 42.00 3.79
817 2989 0.957362 GATAAAGCCCTGCCTGATGC 59.043 55.000 0.00 0.00 41.77 3.91
819 2991 2.243221 ACAAGATAAAGCCCTGCCTGAT 59.757 45.455 0.00 0.00 0.00 2.90
823 2995 1.393603 GGACAAGATAAAGCCCTGCC 58.606 55.000 0.00 0.00 0.00 4.85
824 2996 1.017387 CGGACAAGATAAAGCCCTGC 58.983 55.000 0.00 0.00 0.00 4.85
826 2998 2.304761 TGAACGGACAAGATAAAGCCCT 59.695 45.455 0.00 0.00 0.00 5.19
827 2999 2.706890 TGAACGGACAAGATAAAGCCC 58.293 47.619 0.00 0.00 0.00 5.19
828 3000 4.272748 GGTATGAACGGACAAGATAAAGCC 59.727 45.833 0.00 0.00 0.00 4.35
829 3001 4.272748 GGGTATGAACGGACAAGATAAAGC 59.727 45.833 0.00 0.00 0.00 3.51
830 3002 5.293569 GTGGGTATGAACGGACAAGATAAAG 59.706 44.000 0.00 0.00 0.00 1.85
832 3004 4.383335 GGTGGGTATGAACGGACAAGATAA 60.383 45.833 0.00 0.00 0.00 1.75
833 3005 3.133362 GGTGGGTATGAACGGACAAGATA 59.867 47.826 0.00 0.00 0.00 1.98
834 3006 2.093128 GGTGGGTATGAACGGACAAGAT 60.093 50.000 0.00 0.00 0.00 2.40
835 3007 1.276989 GGTGGGTATGAACGGACAAGA 59.723 52.381 0.00 0.00 0.00 3.02
836 3008 1.002659 TGGTGGGTATGAACGGACAAG 59.997 52.381 0.00 0.00 0.00 3.16
837 3009 1.057471 TGGTGGGTATGAACGGACAA 58.943 50.000 0.00 0.00 0.00 3.18
839 3011 2.413310 AATGGTGGGTATGAACGGAC 57.587 50.000 0.00 0.00 0.00 4.79
840 3012 2.619332 CCAAATGGTGGGTATGAACGGA 60.619 50.000 0.00 0.00 44.64 4.69
841 3013 1.748493 CCAAATGGTGGGTATGAACGG 59.252 52.381 0.00 0.00 44.64 4.44
842 3014 3.699038 AATCCAAATGGTGGGTATGAACG 59.301 43.478 0.00 0.00 41.31 3.95
843 3015 4.099419 GGAATCCAAATGGTGGGTATGAAC 59.901 45.833 0.00 0.00 41.31 3.18
854 4375 2.653726 TCGATGTGGGAATCCAAATGG 58.346 47.619 0.09 0.00 46.04 3.16
894 4415 0.603975 AGGTTCCTTCGAGCTTGCAC 60.604 55.000 0.00 0.00 0.00 4.57
949 4470 3.084536 TGCTTTGCTTGTGATGGGATA 57.915 42.857 0.00 0.00 0.00 2.59
1071 4598 3.211865 TGTTGTGTGGCGTTGGTATTTA 58.788 40.909 0.00 0.00 0.00 1.40
1073 4600 1.681538 TGTTGTGTGGCGTTGGTATT 58.318 45.000 0.00 0.00 0.00 1.89
1110 7356 7.276438 GCACAAGAATGGATGGATCTTTTTAAC 59.724 37.037 0.00 0.00 31.26 2.01
1113 7359 5.482878 AGCACAAGAATGGATGGATCTTTTT 59.517 36.000 0.00 0.00 31.26 1.94
1344 7590 1.414158 CGGTGGAGGACTATGATGGT 58.586 55.000 0.00 0.00 0.00 3.55
1390 7636 2.112297 GGTGGTGGCCGTTCAGAA 59.888 61.111 0.00 0.00 0.00 3.02
1484 7741 6.472887 TCCTGTCTAGTTCCTTACAAAATGG 58.527 40.000 0.00 0.00 0.00 3.16
1487 7744 7.741785 TGATTCCTGTCTAGTTCCTTACAAAA 58.258 34.615 0.00 0.00 0.00 2.44
1539 7796 7.621796 AGAGGTTTTCTTATTATTGTCTCGGT 58.378 34.615 0.00 0.00 29.61 4.69
1567 7825 5.006386 AGTTCCTTAGGCAAGTCTCAAATG 58.994 41.667 0.00 0.00 0.00 2.32
1587 7845 2.713863 TGGTAAACCGACCACAAGTT 57.286 45.000 0.00 0.00 44.79 2.66
1611 7870 1.079503 GAAGTCATGGCAACCGAGAC 58.920 55.000 0.00 0.00 32.53 3.36
1616 7875 4.630111 TGAAAAATGAAGTCATGGCAACC 58.370 39.130 0.00 0.00 36.56 3.77
1627 7886 8.739039 TGAGTGTGGGTAATATGAAAAATGAAG 58.261 33.333 0.00 0.00 0.00 3.02
1670 7929 4.153117 CGCTGATAATTGAGGGCTTGATAC 59.847 45.833 0.00 0.00 0.00 2.24
1681 7940 1.933181 CGACCAAGCGCTGATAATTGA 59.067 47.619 12.58 0.00 0.00 2.57
1687 7946 2.125512 GGACGACCAAGCGCTGAT 60.126 61.111 12.58 0.00 35.97 2.90
1701 7960 2.126424 GGTCACGTGCTCGAGGAC 60.126 66.667 25.53 25.53 40.76 3.85
1706 7965 2.152699 GTCGATGGTCACGTGCTCG 61.153 63.158 11.67 15.56 43.34 5.03
1730 7989 1.074084 TGCCAAAACATTCGTAGGGGA 59.926 47.619 0.00 0.00 0.00 4.81
1732 7991 2.352323 GGTTGCCAAAACATTCGTAGGG 60.352 50.000 0.00 0.00 0.00 3.53
1734 7993 2.031508 ACGGTTGCCAAAACATTCGTAG 60.032 45.455 0.00 0.00 30.47 3.51
1735 7994 1.948145 ACGGTTGCCAAAACATTCGTA 59.052 42.857 0.00 0.00 30.47 3.43
1738 7997 2.393764 CTGACGGTTGCCAAAACATTC 58.606 47.619 0.00 0.00 0.00 2.67
1739 7998 1.537990 GCTGACGGTTGCCAAAACATT 60.538 47.619 0.00 0.00 0.00 2.71
1740 7999 0.031994 GCTGACGGTTGCCAAAACAT 59.968 50.000 0.00 0.00 0.00 2.71
1741 8000 1.315981 TGCTGACGGTTGCCAAAACA 61.316 50.000 4.98 0.00 0.00 2.83
1746 8005 0.673333 CTACATGCTGACGGTTGCCA 60.673 55.000 0.00 0.00 0.00 4.92
1754 8013 1.914634 CAGGACGTCTACATGCTGAC 58.085 55.000 16.46 8.20 36.45 3.51
1764 8023 0.105593 CCATGCTATGCAGGACGTCT 59.894 55.000 16.46 0.00 43.36 4.18
1783 8042 5.008019 AGCATTCACAAATATGGATGACGAC 59.992 40.000 0.00 0.00 0.00 4.34
1785 8044 5.428496 AGCATTCACAAATATGGATGACG 57.572 39.130 0.00 0.00 0.00 4.35
1866 8125 0.170561 CAAGCTCTCAGCAACATGGC 59.829 55.000 0.00 0.00 45.56 4.40
1873 8132 2.359602 GCCAGCAAGCTCTCAGCA 60.360 61.111 0.00 0.00 45.56 4.41
1888 8147 1.507141 CGGTGAAGTTGGTGACTGCC 61.507 60.000 0.00 0.00 39.00 4.85
1895 8154 0.759346 AAGCTCTCGGTGAAGTTGGT 59.241 50.000 0.00 0.00 0.00 3.67
1901 8160 1.004560 CCAGCAAGCTCTCGGTGAA 60.005 57.895 10.52 0.00 32.37 3.18
1907 8166 1.004080 TGACTGCCAGCAAGCTCTC 60.004 57.895 0.00 0.00 0.00 3.20
1908 8167 1.302351 GTGACTGCCAGCAAGCTCT 60.302 57.895 0.00 0.00 0.00 4.09
1909 8168 2.331132 GGTGACTGCCAGCAAGCTC 61.331 63.158 0.00 0.00 42.56 4.09
1910 8169 2.282040 GGTGACTGCCAGCAAGCT 60.282 61.111 0.00 0.00 42.56 3.74
1915 8174 0.819259 TGAAGTTGGTGACTGCCAGC 60.819 55.000 0.00 0.00 43.29 4.85
1916 8175 0.947244 GTGAAGTTGGTGACTGCCAG 59.053 55.000 0.00 0.00 40.01 4.85
1917 8176 0.465460 GGTGAAGTTGGTGACTGCCA 60.465 55.000 0.00 0.00 39.00 4.92
1918 8177 1.507141 CGGTGAAGTTGGTGACTGCC 61.507 60.000 0.00 0.00 39.00 4.85
1919 8178 0.531974 TCGGTGAAGTTGGTGACTGC 60.532 55.000 0.00 0.00 39.00 4.40
1920 8179 1.068588 TCTCGGTGAAGTTGGTGACTG 59.931 52.381 0.00 0.00 39.00 3.51
1921 8180 1.341531 CTCTCGGTGAAGTTGGTGACT 59.658 52.381 0.00 0.00 41.47 3.41
1922 8181 1.784525 CTCTCGGTGAAGTTGGTGAC 58.215 55.000 0.00 0.00 0.00 3.67
1923 8182 0.033504 GCTCTCGGTGAAGTTGGTGA 59.966 55.000 0.00 0.00 0.00 4.02
1924 8183 0.034059 AGCTCTCGGTGAAGTTGGTG 59.966 55.000 0.00 0.00 0.00 4.17
1925 8184 0.759346 AAGCTCTCGGTGAAGTTGGT 59.241 50.000 0.00 0.00 0.00 3.67
1926 8185 1.151668 CAAGCTCTCGGTGAAGTTGG 58.848 55.000 0.00 0.00 0.00 3.77
1927 8186 0.514691 GCAAGCTCTCGGTGAAGTTG 59.485 55.000 0.00 0.00 0.00 3.16
1928 8187 0.394565 AGCAAGCTCTCGGTGAAGTT 59.605 50.000 0.00 0.00 0.00 2.66
1929 8188 0.320247 CAGCAAGCTCTCGGTGAAGT 60.320 55.000 4.42 0.00 32.37 3.01
1930 8189 0.037882 TCAGCAAGCTCTCGGTGAAG 60.038 55.000 9.44 0.00 36.75 3.02
1931 8190 0.319900 GTCAGCAAGCTCTCGGTGAA 60.320 55.000 12.51 0.00 40.97 3.18
1932 8191 1.290324 GTCAGCAAGCTCTCGGTGA 59.710 57.895 8.15 8.15 37.31 4.02
1933 8192 1.739562 GGTCAGCAAGCTCTCGGTG 60.740 63.158 0.00 0.00 0.00 4.94
1934 8193 2.659610 GGTCAGCAAGCTCTCGGT 59.340 61.111 0.00 0.00 0.00 4.69
1935 8194 2.507992 CGGTCAGCAAGCTCTCGG 60.508 66.667 0.00 0.00 0.00 4.63
1936 8195 1.803519 GACGGTCAGCAAGCTCTCG 60.804 63.158 2.62 0.00 0.00 4.04
2017 8276 9.863845 CATGCATATAATTTGAGCCATTAATGA 57.136 29.630 17.23 0.00 0.00 2.57
2018 8277 8.600625 GCATGCATATAATTTGAGCCATTAATG 58.399 33.333 14.21 8.58 0.00 1.90
2019 8278 8.537016 AGCATGCATATAATTTGAGCCATTAAT 58.463 29.630 21.98 0.00 0.00 1.40
2021 8280 7.470935 AGCATGCATATAATTTGAGCCATTA 57.529 32.000 21.98 0.00 0.00 1.90
2022 8281 6.354794 AGCATGCATATAATTTGAGCCATT 57.645 33.333 21.98 0.00 0.00 3.16
2023 8282 5.995565 AGCATGCATATAATTTGAGCCAT 57.004 34.783 21.98 0.00 0.00 4.40
2025 8284 8.767478 AATAAAGCATGCATATAATTTGAGCC 57.233 30.769 21.98 0.00 0.00 4.70
2139 8412 9.030452 ACTTGTGCAATTAATTAGGTCCATTTA 57.970 29.630 0.00 0.00 0.00 1.40
2141 8414 7.480760 ACTTGTGCAATTAATTAGGTCCATT 57.519 32.000 0.00 0.00 0.00 3.16
2142 8415 8.588290 TTACTTGTGCAATTAATTAGGTCCAT 57.412 30.769 0.00 0.00 0.00 3.41
2143 8416 8.588290 ATTACTTGTGCAATTAATTAGGTCCA 57.412 30.769 0.00 0.00 0.00 4.02
2185 8460 7.617723 TGGAAACCAAGCCATTACTACAATTAT 59.382 33.333 0.00 0.00 0.00 1.28
2190 8465 4.374689 TGGAAACCAAGCCATTACTACA 57.625 40.909 0.00 0.00 0.00 2.74
2200 8475 3.679502 CCGAATCAATTTGGAAACCAAGC 59.320 43.478 3.23 0.00 44.84 4.01
2210 8485 3.302365 ACCAAGCACCGAATCAATTTG 57.698 42.857 0.00 0.00 0.00 2.32
2212 8487 4.279671 TGTAAACCAAGCACCGAATCAATT 59.720 37.500 0.00 0.00 0.00 2.32
2213 8488 3.823873 TGTAAACCAAGCACCGAATCAAT 59.176 39.130 0.00 0.00 0.00 2.57
2214 8489 3.215151 TGTAAACCAAGCACCGAATCAA 58.785 40.909 0.00 0.00 0.00 2.57
2215 8490 2.852449 TGTAAACCAAGCACCGAATCA 58.148 42.857 0.00 0.00 0.00 2.57
2216 8491 3.907894 TTGTAAACCAAGCACCGAATC 57.092 42.857 0.00 0.00 0.00 2.52
2217 8492 4.864704 ATTTGTAAACCAAGCACCGAAT 57.135 36.364 0.00 0.00 33.75 3.34
2218 8493 4.657436 AATTTGTAAACCAAGCACCGAA 57.343 36.364 0.00 0.00 33.75 4.30
2219 8494 5.968528 ATAATTTGTAAACCAAGCACCGA 57.031 34.783 0.00 0.00 33.75 4.69
2220 8495 7.414814 AAAATAATTTGTAAACCAAGCACCG 57.585 32.000 0.00 0.00 33.75 4.94
2245 8520 8.888716 AGTCGTTTGCACACATTCATTAATATA 58.111 29.630 3.55 0.00 0.00 0.86
2247 8522 7.020602 CAGTCGTTTGCACACATTCATTAATA 58.979 34.615 3.55 0.00 0.00 0.98
2264 8539 3.682858 GGTGTATGTGTATGCAGTCGTTT 59.317 43.478 0.00 0.00 29.18 3.60
2268 8543 6.978343 TTAAAGGTGTATGTGTATGCAGTC 57.022 37.500 0.00 0.00 29.18 3.51
2272 8547 9.976511 TCTACTATTAAAGGTGTATGTGTATGC 57.023 33.333 0.00 0.00 0.00 3.14
2323 8598 2.100584 AGTCGAGCTCAACTGGATCATC 59.899 50.000 15.40 0.00 35.39 2.92
2324 8599 2.100584 GAGTCGAGCTCAACTGGATCAT 59.899 50.000 13.17 0.00 43.58 2.45
2332 8607 0.238817 AGTGTCGAGTCGAGCTCAAC 59.761 55.000 17.12 5.40 44.33 3.18
2378 8653 4.036941 TGACCGGGCTATAAAAGGTTTT 57.963 40.909 9.82 0.00 35.00 2.43
2393 8669 2.018542 TTCGGCTCTTTTATGACCGG 57.981 50.000 0.00 0.00 43.96 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.