Multiple sequence alignment - TraesCS3A01G450500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G450500 chr3A 100.000 2889 0 0 1 2889 689110923 689113811 0.000000e+00 5336.0
1 TraesCS3A01G450500 chr3D 90.441 2176 108 32 1 2108 552781387 552783530 0.000000e+00 2774.0
2 TraesCS3A01G450500 chr3D 93.103 783 34 8 2108 2889 552783616 552784379 0.000000e+00 1129.0
3 TraesCS3A01G450500 chr3B 90.009 2162 110 37 2 2108 733627638 733629748 0.000000e+00 2699.0
4 TraesCS3A01G450500 chr3B 92.112 786 50 9 2108 2889 733629828 733630605 0.000000e+00 1098.0
5 TraesCS3A01G450500 chr3B 85.859 495 52 2 996 1490 733574030 733574506 7.140000e-141 510.0
6 TraesCS3A01G450500 chr3B 97.059 34 1 0 767 800 733573780 733573813 1.120000e-04 58.4
7 TraesCS3A01G450500 chr7D 84.524 756 89 17 997 1731 573898063 573898811 0.000000e+00 723.0
8 TraesCS3A01G450500 chr1D 81.930 891 114 21 996 1857 395559591 395558719 0.000000e+00 710.0
9 TraesCS3A01G450500 chr1D 85.393 267 23 10 590 844 460183315 460183053 2.210000e-66 263.0
10 TraesCS3A01G450500 chr1A 81.646 899 110 26 996 1861 489601197 489600321 0.000000e+00 695.0
11 TraesCS3A01G450500 chr7B 83.905 758 87 20 996 1731 632684676 632685420 0.000000e+00 691.0
12 TraesCS3A01G450500 chr7B 80.567 247 39 8 2647 2887 19954953 19954710 6.360000e-42 182.0
13 TraesCS3A01G450500 chr1B 80.832 913 109 28 996 1861 526348897 526348004 0.000000e+00 656.0
14 TraesCS3A01G450500 chr2B 77.996 509 89 13 996 1492 759274380 759273883 6.050000e-77 298.0
15 TraesCS3A01G450500 chr5D 87.435 191 12 7 2195 2382 67965704 67965523 2.920000e-50 209.0
16 TraesCS3A01G450500 chr4B 78.109 201 29 8 483 675 48905134 48904941 2.350000e-21 113.0
17 TraesCS3A01G450500 chr4D 75.124 201 33 10 483 675 34062939 34062748 8.580000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G450500 chr3A 689110923 689113811 2888 False 5336.0 5336 100.0000 1 2889 1 chr3A.!!$F1 2888
1 TraesCS3A01G450500 chr3D 552781387 552784379 2992 False 1951.5 2774 91.7720 1 2889 2 chr3D.!!$F1 2888
2 TraesCS3A01G450500 chr3B 733627638 733630605 2967 False 1898.5 2699 91.0605 2 2889 2 chr3B.!!$F2 2887
3 TraesCS3A01G450500 chr3B 733573780 733574506 726 False 284.2 510 91.4590 767 1490 2 chr3B.!!$F1 723
4 TraesCS3A01G450500 chr7D 573898063 573898811 748 False 723.0 723 84.5240 997 1731 1 chr7D.!!$F1 734
5 TraesCS3A01G450500 chr1D 395558719 395559591 872 True 710.0 710 81.9300 996 1857 1 chr1D.!!$R1 861
6 TraesCS3A01G450500 chr1A 489600321 489601197 876 True 695.0 695 81.6460 996 1861 1 chr1A.!!$R1 865
7 TraesCS3A01G450500 chr7B 632684676 632685420 744 False 691.0 691 83.9050 996 1731 1 chr7B.!!$F1 735
8 TraesCS3A01G450500 chr1B 526348004 526348897 893 True 656.0 656 80.8320 996 1861 1 chr1B.!!$R1 865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 433 0.035439 GTGGCGAATGGAGAAAGGGA 60.035 55.0 0.0 0.0 0.0 4.20 F
961 1028 0.468400 TCCGGAAAACCCCAACCTTG 60.468 55.0 0.0 0.0 0.0 3.61 F
993 1065 0.969894 CTCCAAGAACTCACCTCCGT 59.030 55.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1834 1994 0.905337 GGTCAGCTGAGGTAGTGGGT 60.905 60.000 18.89 0.00 0.00 4.51 R
1843 2003 1.277273 TCTGTTGATGGGTCAGCTGAG 59.723 52.381 18.89 0.82 38.15 3.35 R
2602 2857 2.027837 TGCATGTCAGCATCACACTACT 60.028 45.455 0.00 0.00 40.11 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 5.309806 ACAGGTTAAGGAACACAACTCCTAT 59.690 40.000 0.00 0.00 42.77 2.57
86 89 4.200874 CTCCTATACACTCTGACGAGGTT 58.799 47.826 0.00 0.00 41.71 3.50
116 119 1.666700 CAACCTTTGTCGGTCGAAACA 59.333 47.619 0.00 0.00 35.89 2.83
117 120 2.027003 ACCTTTGTCGGTCGAAACAA 57.973 45.000 5.45 5.45 33.74 2.83
161 164 1.152943 CATGCCATCTGCTCTGCCT 60.153 57.895 0.00 0.00 42.00 4.75
178 181 1.593787 CTGACAGTGCCACCGAGAT 59.406 57.895 0.00 0.00 0.00 2.75
197 200 7.278646 ACCGAGATAAACCTACGGAATAAAAAC 59.721 37.037 0.00 0.00 45.31 2.43
199 202 8.658609 CGAGATAAACCTACGGAATAAAAACAA 58.341 33.333 0.00 0.00 0.00 2.83
231 234 4.453480 AAGAACCAGATCAAGGGAAACA 57.547 40.909 8.82 0.00 0.00 2.83
236 239 2.350522 CAGATCAAGGGAAACACCTCG 58.649 52.381 0.00 0.00 40.87 4.63
244 247 0.736053 GGAAACACCTCGCAACAACA 59.264 50.000 0.00 0.00 35.41 3.33
295 298 2.108952 AGGGAAGACTTGCTCCATGTTT 59.891 45.455 6.67 0.00 0.00 2.83
327 330 4.735132 CGCCACACCACCGACGAT 62.735 66.667 0.00 0.00 0.00 3.73
363 366 7.029053 ACCTTAATAGAAAAACCCAGCTACT 57.971 36.000 0.00 0.00 0.00 2.57
383 386 5.063180 ACTACCATCGACACGAAACAATA 57.937 39.130 0.00 0.00 39.99 1.90
386 389 3.124636 ACCATCGACACGAAACAATAAGC 59.875 43.478 0.00 0.00 39.99 3.09
395 398 4.393062 CACGAAACAATAAGCTCCATGTCT 59.607 41.667 0.00 0.00 0.00 3.41
402 405 5.352569 ACAATAAGCTCCATGTCTCTTTTCG 59.647 40.000 0.00 0.00 0.00 3.46
430 433 0.035439 GTGGCGAATGGAGAAAGGGA 60.035 55.000 0.00 0.00 0.00 4.20
433 436 1.432270 GCGAATGGAGAAAGGGAGCG 61.432 60.000 0.00 0.00 0.00 5.03
472 475 0.636647 TGGGAGGAGGTAGATCAGCA 59.363 55.000 0.00 0.00 0.00 4.41
494 497 0.807496 GTCGTGCTACTACCTCCGTT 59.193 55.000 0.00 0.00 0.00 4.44
519 522 5.163622 CGGGTTACTAGTCCTCGTATTTTGA 60.164 44.000 0.00 0.00 0.00 2.69
663 668 9.979578 ACATTTTGATTTTGCTAGTCAAATACA 57.020 25.926 11.44 11.32 43.53 2.29
675 680 7.094805 TGCTAGTCAAATACATGGTCAAACTTC 60.095 37.037 0.00 0.00 0.00 3.01
683 700 1.060729 TGGTCAAACTTCCATCCCGA 58.939 50.000 0.00 0.00 0.00 5.14
747 764 3.686691 GCTATTCATCTGCCACCTTTCCT 60.687 47.826 0.00 0.00 0.00 3.36
835 879 4.724602 GTGCAGGCTGAGACGCGA 62.725 66.667 20.86 0.00 0.00 5.87
860 904 3.092511 GGGCCCATCCTGCAGAGA 61.093 66.667 19.95 11.43 34.39 3.10
861 905 2.459086 GGGCCCATCCTGCAGAGAT 61.459 63.158 19.95 13.35 34.39 2.75
863 907 1.897615 GCCCATCCTGCAGAGATGC 60.898 63.158 26.93 18.60 39.87 3.91
869 913 0.750546 TCCTGCAGAGATGCATTGCC 60.751 55.000 17.39 3.11 44.47 4.52
870 914 0.752009 CCTGCAGAGATGCATTGCCT 60.752 55.000 17.39 2.84 44.47 4.75
872 916 0.750546 TGCAGAGATGCATTGCCTCC 60.751 55.000 17.05 2.34 40.23 4.30
873 917 0.750546 GCAGAGATGCATTGCCTCCA 60.751 55.000 10.20 0.00 34.41 3.86
874 918 1.982660 CAGAGATGCATTGCCTCCAT 58.017 50.000 6.12 0.00 0.00 3.41
875 919 2.307768 CAGAGATGCATTGCCTCCATT 58.692 47.619 6.12 0.00 0.00 3.16
876 920 3.483421 CAGAGATGCATTGCCTCCATTA 58.517 45.455 6.12 0.00 0.00 1.90
877 921 3.502595 CAGAGATGCATTGCCTCCATTAG 59.497 47.826 6.12 0.00 0.00 1.73
878 922 2.228343 GAGATGCATTGCCTCCATTAGC 59.772 50.000 6.12 0.00 0.00 3.09
879 923 2.158505 AGATGCATTGCCTCCATTAGCT 60.159 45.455 6.12 0.00 0.00 3.32
961 1028 0.468400 TCCGGAAAACCCCAACCTTG 60.468 55.000 0.00 0.00 0.00 3.61
993 1065 0.969894 CTCCAAGAACTCACCTCCGT 59.030 55.000 0.00 0.00 0.00 4.69
1658 1805 2.439701 CACCGTCCTCTCCCGCTA 60.440 66.667 0.00 0.00 0.00 4.26
1740 1887 1.871676 GTTGAGGTCCGAACTCCAAAC 59.128 52.381 11.03 6.01 34.06 2.93
1806 1962 5.726138 GCATCAATCTGACAGTTCGATTCAC 60.726 44.000 1.59 0.00 0.00 3.18
1834 1994 3.198417 TCATCTCACTGCAGATTAGCCAA 59.802 43.478 23.35 0.00 30.07 4.52
1843 2003 2.919228 CAGATTAGCCAACCCACTACC 58.081 52.381 0.00 0.00 0.00 3.18
1912 2072 4.386245 GAGGCTGTCGACACGATC 57.614 61.111 15.76 8.69 38.42 3.69
1954 2121 4.036734 TGAATTGCTGATCGAATTAAGCCC 59.963 41.667 8.83 0.00 34.70 5.19
1996 2163 5.091261 ACCAGTGGTTGACTTCATCTATC 57.909 43.478 9.70 0.00 29.75 2.08
2062 2229 2.982488 AGTTGAGTTGGGTCCTTCAGAT 59.018 45.455 0.00 0.00 0.00 2.90
2072 2239 3.454812 GGGTCCTTCAGATTAACCTGCTA 59.545 47.826 0.00 0.00 34.28 3.49
2207 2461 5.721876 AAATTGCATCTGTTGTGTGTTTG 57.278 34.783 0.00 0.00 0.00 2.93
2208 2462 3.865011 TTGCATCTGTTGTGTGTTTGT 57.135 38.095 0.00 0.00 0.00 2.83
2209 2463 3.865011 TGCATCTGTTGTGTGTTTGTT 57.135 38.095 0.00 0.00 0.00 2.83
2211 2465 5.316327 TGCATCTGTTGTGTGTTTGTTTA 57.684 34.783 0.00 0.00 0.00 2.01
2214 2468 6.475076 TGCATCTGTTGTGTGTTTGTTTAATC 59.525 34.615 0.00 0.00 0.00 1.75
2215 2469 6.475076 GCATCTGTTGTGTGTTTGTTTAATCA 59.525 34.615 0.00 0.00 0.00 2.57
2216 2470 7.515059 GCATCTGTTGTGTGTTTGTTTAATCAC 60.515 37.037 0.00 0.00 37.14 3.06
2217 2471 6.914259 TCTGTTGTGTGTTTGTTTAATCACA 58.086 32.000 0.00 0.00 41.66 3.58
2262 2516 6.028146 TGTTTGGTAATCTTCGTAGCTACA 57.972 37.500 23.21 8.16 0.00 2.74
2333 2587 3.074390 TGATGTCCCTGTTCATCCAAACT 59.926 43.478 0.00 0.00 39.47 2.66
2374 2628 1.376466 GTGTGGTGGCCTGATGTCT 59.624 57.895 3.32 0.00 0.00 3.41
2390 2644 3.876274 TGTCTCTACTTGATGTGCCTC 57.124 47.619 0.00 0.00 0.00 4.70
2436 2691 7.494952 TGATTTCAGTTGCATTGTTGATCAAAA 59.505 29.630 10.35 0.76 39.62 2.44
2445 2700 5.389778 CATTGTTGATCAAAACCGATCGAA 58.610 37.500 18.66 0.00 44.02 3.71
2455 2710 7.234187 TCAAAACCGATCGAATTCTTATCAG 57.766 36.000 18.66 8.19 0.00 2.90
2657 2912 1.202143 GGACAACCGAATCGAATTGCC 60.202 52.381 15.94 14.19 0.00 4.52
2662 2917 2.348660 ACCGAATCGAATTGCCGTTTA 58.651 42.857 3.36 0.00 0.00 2.01
2738 2993 5.893897 TTTTCTTTGTTGGCATTTGCTTT 57.106 30.435 2.12 0.00 41.70 3.51
2783 3038 6.135454 AGATTAATAAATGTGTGCATCCCCA 58.865 36.000 0.00 0.00 33.50 4.96
2785 3040 4.470334 AATAAATGTGTGCATCCCCAAC 57.530 40.909 0.00 0.00 33.50 3.77
2788 3043 1.259609 ATGTGTGCATCCCCAACTTG 58.740 50.000 0.00 0.00 0.00 3.16
2793 3048 1.818674 GTGCATCCCCAACTTGGTTAG 59.181 52.381 7.06 0.00 35.17 2.34
2810 3065 3.077359 GTTAGTCTTGTTCTGCATGGCT 58.923 45.455 0.00 0.00 39.91 4.75
2840 3095 8.612619 CAGTTATCTGGTATGGTTGTGAATTAC 58.387 37.037 0.00 0.00 37.97 1.89
2841 3096 8.325787 AGTTATCTGGTATGGTTGTGAATTACA 58.674 33.333 0.00 0.00 37.56 2.41
2868 3123 3.000727 CAACCATAGTCACCGAGAAACC 58.999 50.000 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.220110 ACTTCAACCTCGTCAGAGTGTA 58.780 45.455 0.00 0.00 42.86 2.90
86 89 2.875933 CGACAAAGGTTGGCTAACTTCA 59.124 45.455 13.03 0.00 36.19 3.02
116 119 4.338400 GTGTGTTTTGGTCCTCTAGCTTTT 59.662 41.667 0.00 0.00 0.00 2.27
117 120 3.883489 GTGTGTTTTGGTCCTCTAGCTTT 59.117 43.478 0.00 0.00 0.00 3.51
161 164 1.262417 TTATCTCGGTGGCACTGTCA 58.738 50.000 24.83 13.54 0.00 3.58
197 200 4.065088 TCTGGTTCTTTGAGTCGGATTTG 58.935 43.478 0.00 0.00 0.00 2.32
199 202 4.020218 TGATCTGGTTCTTTGAGTCGGATT 60.020 41.667 0.00 0.00 0.00 3.01
200 203 3.515502 TGATCTGGTTCTTTGAGTCGGAT 59.484 43.478 0.00 0.00 0.00 4.18
201 204 2.897326 TGATCTGGTTCTTTGAGTCGGA 59.103 45.455 0.00 0.00 0.00 4.55
231 234 2.029828 TGTTTTTGTGTTGTTGCGAGGT 60.030 40.909 0.00 0.00 0.00 3.85
236 239 4.676849 AATGGTGTTTTTGTGTTGTTGC 57.323 36.364 0.00 0.00 0.00 4.17
244 247 1.604755 TCGCGCTAATGGTGTTTTTGT 59.395 42.857 5.56 0.00 0.00 2.83
348 351 3.621715 CGATGGTAGTAGCTGGGTTTTTC 59.378 47.826 0.00 0.00 0.00 2.29
363 366 4.327898 GCTTATTGTTTCGTGTCGATGGTA 59.672 41.667 0.00 0.00 35.23 3.25
383 386 3.409026 ACGAAAAGAGACATGGAGCTT 57.591 42.857 0.00 0.00 0.00 3.74
386 389 2.159787 CGCAACGAAAAGAGACATGGAG 60.160 50.000 0.00 0.00 0.00 3.86
395 398 0.882927 CCACCTCCGCAACGAAAAGA 60.883 55.000 0.00 0.00 0.00 2.52
402 405 2.746277 ATTCGCCACCTCCGCAAC 60.746 61.111 0.00 0.00 0.00 4.17
442 445 4.069232 CCTCCCAACGAGCTCGCA 62.069 66.667 34.83 13.34 44.43 5.10
444 447 2.492090 CTCCTCCCAACGAGCTCG 59.508 66.667 33.45 33.45 46.33 5.03
472 475 1.404391 CGGAGGTAGTAGCACGACATT 59.596 52.381 9.89 0.00 0.00 2.71
494 497 3.845781 ATACGAGGACTAGTAACCCGA 57.154 47.619 14.29 3.93 0.00 5.14
650 655 6.743575 AGTTTGACCATGTATTTGACTAGC 57.256 37.500 0.00 0.00 0.00 3.42
675 680 1.490574 AACCTCTCTCTTCGGGATGG 58.509 55.000 0.00 0.00 0.00 3.51
683 700 3.498334 AGTACCGTGAAACCTCTCTCTT 58.502 45.455 0.00 0.00 0.00 2.85
747 764 7.199766 ACAAGACGTGCAATTTCAGAAATTTA 58.800 30.769 17.12 8.01 38.97 1.40
860 904 2.158505 AGAGCTAATGGAGGCAATGCAT 60.159 45.455 7.79 0.00 42.62 3.96
861 905 1.213678 AGAGCTAATGGAGGCAATGCA 59.786 47.619 7.79 0.00 0.00 3.96
863 907 2.158711 TGGAGAGCTAATGGAGGCAATG 60.159 50.000 0.00 0.00 0.00 2.82
869 913 2.298729 GGCTACTGGAGAGCTAATGGAG 59.701 54.545 0.00 0.00 39.98 3.86
870 914 2.320781 GGCTACTGGAGAGCTAATGGA 58.679 52.381 0.00 0.00 39.98 3.41
872 916 1.604185 GCGGCTACTGGAGAGCTAATG 60.604 57.143 0.00 0.00 39.98 1.90
873 917 0.676736 GCGGCTACTGGAGAGCTAAT 59.323 55.000 0.00 0.00 39.98 1.73
874 918 0.395862 AGCGGCTACTGGAGAGCTAA 60.396 55.000 0.00 0.00 38.44 3.09
875 919 0.820074 GAGCGGCTACTGGAGAGCTA 60.820 60.000 0.60 0.00 39.72 3.32
876 920 2.043450 AGCGGCTACTGGAGAGCT 60.043 61.111 0.00 4.73 39.98 4.09
877 921 2.415426 GAGCGGCTACTGGAGAGC 59.585 66.667 0.60 0.00 39.33 4.09
878 922 1.820056 TCGAGCGGCTACTGGAGAG 60.820 63.158 0.60 0.00 0.00 3.20
879 923 2.113433 GTCGAGCGGCTACTGGAGA 61.113 63.158 0.60 0.00 0.00 3.71
908 972 1.471684 GAGAATGCAGGCAGGTGAAAG 59.528 52.381 0.00 0.00 0.00 2.62
961 1028 1.064017 TCTTGGAGAGGAGAGGAGAGC 60.064 57.143 0.00 0.00 0.00 4.09
1404 1501 2.202610 TCGAGCATCTTGACGGCG 60.203 61.111 4.80 4.80 0.00 6.46
1560 1692 4.609018 AGCGCCTTGTGCACGTCT 62.609 61.111 13.13 0.00 42.00 4.18
1740 1887 1.181786 AAGAAGGAGCACGAGAGAGG 58.818 55.000 0.00 0.00 0.00 3.69
1806 1962 2.981898 TCTGCAGTGAGATGAACATGG 58.018 47.619 14.67 0.00 0.00 3.66
1834 1994 0.905337 GGTCAGCTGAGGTAGTGGGT 60.905 60.000 18.89 0.00 0.00 4.51
1843 2003 1.277273 TCTGTTGATGGGTCAGCTGAG 59.723 52.381 18.89 0.82 38.15 3.35
1954 2121 7.500892 CACTGGTATATATGCTAGGAGGAGTAG 59.499 44.444 16.50 0.00 0.00 2.57
1996 2163 8.874816 CAATGCATGATGAACTATCTAGAGATG 58.125 37.037 0.00 0.00 36.71 2.90
2072 2239 7.191593 TGCATCCAGATCATAGTAGCATATT 57.808 36.000 0.00 0.00 0.00 1.28
2262 2516 4.283212 CCAGTCCCAAATAACCAACAACAT 59.717 41.667 0.00 0.00 0.00 2.71
2333 2587 9.456147 ACACATAATAACACAATTAGGCAGTAA 57.544 29.630 0.00 0.00 28.54 2.24
2390 2644 2.736144 TGTACGCTGGTTCTACCTTG 57.264 50.000 0.00 0.00 39.58 3.61
2436 2691 4.537965 CGACTGATAAGAATTCGATCGGT 58.462 43.478 25.70 25.70 40.97 4.69
2455 2710 5.239963 AGAGAGCCTAGATAAACTAAGCGAC 59.760 44.000 0.00 0.00 41.76 5.19
2596 2851 3.697045 GTCAGCATCACACTACTACTCCT 59.303 47.826 0.00 0.00 0.00 3.69
2597 2852 3.444034 TGTCAGCATCACACTACTACTCC 59.556 47.826 0.00 0.00 0.00 3.85
2598 2853 4.703645 TGTCAGCATCACACTACTACTC 57.296 45.455 0.00 0.00 0.00 2.59
2599 2854 4.679106 GCATGTCAGCATCACACTACTACT 60.679 45.833 0.00 0.00 31.99 2.57
2600 2855 3.553511 GCATGTCAGCATCACACTACTAC 59.446 47.826 0.00 0.00 31.99 2.73
2602 2857 2.027837 TGCATGTCAGCATCACACTACT 60.028 45.455 0.00 0.00 40.11 2.57
2657 2912 5.345741 CCAATTTTTGACATGCTCCTAAACG 59.654 40.000 0.00 0.00 0.00 3.60
2662 2917 3.509442 TCCCAATTTTTGACATGCTCCT 58.491 40.909 0.00 0.00 0.00 3.69
2722 2977 2.879002 TCGAAAGCAAATGCCAACAA 57.121 40.000 0.94 0.00 43.38 2.83
2725 2980 3.872511 ATGATCGAAAGCAAATGCCAA 57.127 38.095 0.94 0.00 43.38 4.52
2779 3034 3.223674 ACAAGACTAACCAAGTTGGGG 57.776 47.619 25.59 16.50 43.37 4.96
2783 3038 4.523083 TGCAGAACAAGACTAACCAAGTT 58.477 39.130 0.00 0.00 39.07 2.66
2785 3040 4.083110 CCATGCAGAACAAGACTAACCAAG 60.083 45.833 0.00 0.00 0.00 3.61
2788 3043 2.162408 GCCATGCAGAACAAGACTAACC 59.838 50.000 0.00 0.00 0.00 2.85
2793 3048 3.253188 TGTTAAGCCATGCAGAACAAGAC 59.747 43.478 0.00 0.00 34.28 3.01
2810 3065 7.681679 TCACAACCATACCAGATAACTGTTAA 58.318 34.615 4.11 0.00 42.05 2.01
2840 3095 4.441792 TCGGTGACTATGGTTGATCATTG 58.558 43.478 0.00 0.00 0.00 2.82
2841 3096 4.405680 TCTCGGTGACTATGGTTGATCATT 59.594 41.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.