Multiple sequence alignment - TraesCS3A01G450400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G450400 chr3A 100.000 2962 0 0 1 2962 689072156 689075117 0.000000e+00 5470.0
1 TraesCS3A01G450400 chr3A 83.457 538 43 12 1502 2017 720602804 720602291 2.690000e-125 459.0
2 TraesCS3A01G450400 chr3B 92.016 1528 71 12 977 2478 733600706 733602208 0.000000e+00 2098.0
3 TraesCS3A01G450400 chr3B 90.244 451 24 5 2527 2962 733602205 733602650 3.310000e-159 571.0
4 TraesCS3A01G450400 chr3B 90.881 329 26 3 595 920 333447599 333447926 3.500000e-119 438.0
5 TraesCS3A01G450400 chr3B 87.500 216 26 1 1 216 143661877 143662091 6.340000e-62 248.0
6 TraesCS3A01G450400 chr1D 85.811 1924 140 60 977 2846 460187677 460185833 0.000000e+00 1917.0
7 TraesCS3A01G450400 chr1D 84.866 337 29 12 223 553 460188082 460187762 1.320000e-83 320.0
8 TraesCS3A01G450400 chr1D 86.266 233 17 7 1 218 483278689 483278921 3.820000e-59 239.0
9 TraesCS3A01G450400 chr1D 79.585 289 35 14 2050 2332 395558605 395558335 5.040000e-43 185.0
10 TraesCS3A01G450400 chr7B 87.155 1378 91 36 918 2264 19956949 19955627 0.000000e+00 1485.0
11 TraesCS3A01G450400 chr7B 92.705 329 20 2 595 921 435675957 435675631 3.460000e-129 472.0
12 TraesCS3A01G450400 chr7B 91.768 328 22 3 596 920 474288441 474288766 4.500000e-123 451.0
13 TraesCS3A01G450400 chr7B 85.821 268 34 3 2691 2957 19955310 19955046 6.250000e-72 281.0
14 TraesCS3A01G450400 chr7B 75.137 547 90 25 997 1523 632946964 632946444 6.430000e-52 215.0
15 TraesCS3A01G450400 chr7B 88.095 168 9 4 2283 2447 632688867 632689026 3.900000e-44 189.0
16 TraesCS3A01G450400 chr7B 83.060 183 19 8 2050 2222 19959615 19959435 3.950000e-34 156.0
17 TraesCS3A01G450400 chr7B 88.312 77 8 1 2283 2359 632690955 632691030 1.130000e-14 91.6
18 TraesCS3A01G450400 chr7B 79.798 99 11 8 1993 2087 632685582 632685675 2.460000e-06 63.9
19 TraesCS3A01G450400 chr3D 90.406 1084 48 19 920 1978 552769923 552770975 0.000000e+00 1375.0
20 TraesCS3A01G450400 chr3D 91.794 524 41 1 2439 2960 552771516 552772039 0.000000e+00 728.0
21 TraesCS3A01G450400 chr3D 93.976 415 23 2 1972 2385 552771097 552771510 6.970000e-176 627.0
22 TraesCS3A01G450400 chr3D 85.950 484 41 12 1324 1792 32390187 32389716 2.650000e-135 492.0
23 TraesCS3A01G450400 chr3D 85.751 386 32 9 215 592 552769549 552769919 1.290000e-103 387.0
24 TraesCS3A01G450400 chr3D 81.606 386 54 8 989 1373 552755151 552755520 1.330000e-78 303.0
25 TraesCS3A01G450400 chr3D 88.412 233 12 5 1 218 548395329 548395561 1.750000e-67 267.0
26 TraesCS3A01G450400 chr3D 86.975 238 16 6 1 223 157182325 157182562 1.360000e-63 254.0
27 TraesCS3A01G450400 chr3D 96.875 32 1 0 2055 2086 2412428 2412459 1.000000e-03 54.7
28 TraesCS3A01G450400 chr1A 82.393 1596 150 67 1206 2752 551740046 551738533 0.000000e+00 1269.0
29 TraesCS3A01G450400 chr1A 86.605 433 36 7 1370 1792 567966365 567965945 2.690000e-125 459.0
30 TraesCS3A01G450400 chr1A 89.610 231 9 2 1 216 66172886 66172656 2.250000e-71 279.0
31 TraesCS3A01G450400 chr1A 85.897 234 17 4 1 219 451720599 451720367 4.940000e-58 235.0
32 TraesCS3A01G450400 chr1A 79.208 303 38 15 2050 2346 489600244 489599961 1.400000e-43 187.0
33 TraesCS3A01G450400 chr2D 83.848 1424 117 44 917 2264 488995575 488994189 0.000000e+00 1251.0
34 TraesCS3A01G450400 chr2D 79.261 839 85 41 1015 1828 489009867 489009093 1.230000e-138 503.0
35 TraesCS3A01G450400 chr2D 86.364 330 29 8 2056 2382 489008834 489008518 2.190000e-91 346.0
36 TraesCS3A01G450400 chr2D 89.121 239 19 5 2691 2923 489008277 489008040 1.040000e-74 291.0
37 TraesCS3A01G450400 chr2D 90.043 231 8 5 1 216 429098109 429098339 4.830000e-73 285.0
38 TraesCS3A01G450400 chr2D 85.714 266 33 4 2691 2954 488993818 488993556 2.910000e-70 276.0
39 TraesCS3A01G450400 chr2D 84.585 253 28 8 230 473 488995956 488995706 1.060000e-59 241.0
40 TraesCS3A01G450400 chr2D 82.386 176 18 5 2306 2470 488892137 488892310 1.110000e-29 141.0
41 TraesCS3A01G450400 chr2D 84.733 131 8 8 461 588 50779326 50779447 1.440000e-23 121.0
42 TraesCS3A01G450400 chr5D 83.437 803 63 26 1502 2264 397474858 397474086 0.000000e+00 682.0
43 TraesCS3A01G450400 chr5D 82.960 804 66 29 1502 2264 397464915 397465688 0.000000e+00 660.0
44 TraesCS3A01G450400 chr5D 86.469 473 39 10 1333 1792 521253778 521254238 2.050000e-136 496.0
45 TraesCS3A01G450400 chr5D 87.607 234 13 6 1 219 475353722 475353954 1.050000e-64 257.0
46 TraesCS3A01G450400 chr2B 79.218 895 94 43 977 1845 759274399 759273571 3.360000e-149 538.0
47 TraesCS3A01G450400 chr2B 91.667 324 23 3 598 918 194389713 194389391 2.090000e-121 446.0
48 TraesCS3A01G450400 chr2B 81.283 187 15 11 2314 2485 759299948 759299767 1.850000e-27 134.0
49 TraesCS3A01G450400 chr5B 87.049 471 38 10 1333 1792 663517582 663518040 7.320000e-141 510.0
50 TraesCS3A01G450400 chr5B 90.634 331 25 5 591 918 283986061 283986388 4.530000e-118 435.0
51 TraesCS3A01G450400 chr6A 86.412 471 41 9 1333 1792 66266940 66267398 7.380000e-136 494.0
52 TraesCS3A01G450400 chr6A 91.641 323 25 1 598 918 452267809 452268131 2.090000e-121 446.0
53 TraesCS3A01G450400 chr4A 84.259 540 42 10 1501 2017 444375679 444376198 1.230000e-133 486.0
54 TraesCS3A01G450400 chr4A 88.312 231 12 5 1 216 319198111 319197881 2.260000e-66 263.0
55 TraesCS3A01G450400 chr2A 90.533 338 26 4 589 922 40502641 40502306 2.710000e-120 442.0
56 TraesCS3A01G450400 chr2A 90.308 227 21 1 2737 2962 619559879 619560105 2.230000e-76 296.0
57 TraesCS3A01G450400 chr2A 85.294 170 21 2 51 216 8187904 8187735 3.930000e-39 172.0
58 TraesCS3A01G450400 chr5A 90.691 333 26 3 594 923 228892250 228892580 3.500000e-119 438.0
59 TraesCS3A01G450400 chr5A 90.663 332 25 4 598 926 40613590 40613918 1.260000e-118 436.0
60 TraesCS3A01G450400 chr5A 86.207 58 6 2 2749 2805 450785712 450785656 8.860000e-06 62.1
61 TraesCS3A01G450400 chr7A 88.841 233 10 7 1 218 667948187 667948418 3.760000e-69 272.0
62 TraesCS3A01G450400 chr7A 87.603 242 12 5 1 225 16067541 16067301 6.300000e-67 265.0
63 TraesCS3A01G450400 chr7A 87.448 239 15 2 1 224 171285041 171285279 8.140000e-66 261.0
64 TraesCS3A01G450400 chr7A 86.325 234 17 7 1 219 706429288 706429055 1.060000e-59 241.0
65 TraesCS3A01G450400 chr7D 87.879 231 13 5 1 216 10011838 10012068 1.050000e-64 257.0
66 TraesCS3A01G450400 chr7D 86.585 246 16 7 1 230 572350402 572350646 3.790000e-64 255.0
67 TraesCS3A01G450400 chr7D 76.404 534 89 19 997 1523 573909622 573910125 1.360000e-63 254.0
68 TraesCS3A01G450400 chr7D 86.017 236 18 5 1 221 450262297 450262532 3.820000e-59 239.0
69 TraesCS3A01G450400 chr7D 86.631 187 16 4 2266 2447 573905862 573906044 6.480000e-47 198.0
70 TraesCS3A01G450400 chr7D 75.272 368 40 33 1993 2353 573898973 573899296 8.620000e-26 128.0
71 TraesCS3A01G450400 chr7D 79.730 148 11 14 2750 2892 573899644 573899777 4.070000e-14 89.8
72 TraesCS3A01G450400 chr1B 87.349 166 14 4 2283 2447 526345887 526345728 1.810000e-42 183.0
73 TraesCS3A01G450400 chr6D 80.435 138 19 7 2653 2789 257923395 257923525 6.760000e-17 99.0
74 TraesCS3A01G450400 chr6B 82.857 105 11 5 2606 2707 2725496 2725596 1.460000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G450400 chr3A 689072156 689075117 2961 False 5470.000000 5470 100.000000 1 2962 1 chr3A.!!$F1 2961
1 TraesCS3A01G450400 chr3A 720602291 720602804 513 True 459.000000 459 83.457000 1502 2017 1 chr3A.!!$R1 515
2 TraesCS3A01G450400 chr3B 733600706 733602650 1944 False 1334.500000 2098 91.130000 977 2962 2 chr3B.!!$F3 1985
3 TraesCS3A01G450400 chr1D 460185833 460188082 2249 True 1118.500000 1917 85.338500 223 2846 2 chr1D.!!$R2 2623
4 TraesCS3A01G450400 chr7B 19955046 19959615 4569 True 640.666667 1485 85.345333 918 2957 3 chr7B.!!$R3 2039
5 TraesCS3A01G450400 chr7B 632946444 632946964 520 True 215.000000 215 75.137000 997 1523 1 chr7B.!!$R2 526
6 TraesCS3A01G450400 chr3D 552769549 552772039 2490 False 779.250000 1375 90.481750 215 2960 4 chr3D.!!$F5 2745
7 TraesCS3A01G450400 chr1A 551738533 551740046 1513 True 1269.000000 1269 82.393000 1206 2752 1 chr1A.!!$R4 1546
8 TraesCS3A01G450400 chr2D 488993556 488995956 2400 True 589.333333 1251 84.715667 230 2954 3 chr2D.!!$R1 2724
9 TraesCS3A01G450400 chr2D 489008040 489009867 1827 True 380.000000 503 84.915333 1015 2923 3 chr2D.!!$R2 1908
10 TraesCS3A01G450400 chr5D 397474086 397474858 772 True 682.000000 682 83.437000 1502 2264 1 chr5D.!!$R1 762
11 TraesCS3A01G450400 chr5D 397464915 397465688 773 False 660.000000 660 82.960000 1502 2264 1 chr5D.!!$F1 762
12 TraesCS3A01G450400 chr2B 759273571 759274399 828 True 538.000000 538 79.218000 977 1845 1 chr2B.!!$R2 868
13 TraesCS3A01G450400 chr4A 444375679 444376198 519 False 486.000000 486 84.259000 1501 2017 1 chr4A.!!$F1 516
14 TraesCS3A01G450400 chr7D 573905862 573910125 4263 False 226.000000 254 81.517500 997 2447 2 chr7D.!!$F5 1450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
839 841 0.034186 TGGTAGCTTGCATTGGGGAG 60.034 55.0 0.00 0.0 0.0 4.30 F
1947 4860 0.251077 CTTGCTGCAGGAGGGTTTCT 60.251 55.0 17.12 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2037 5138 0.179018 AAACCACAGGCCTGTCTGTC 60.179 55.0 35.79 0.0 45.24 3.51 R
2778 6070 1.256812 TCTGATCCGACTGCACTGAA 58.743 50.0 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.712907 TGGGAGGTAAGTGGCCGC 61.713 66.667 8.71 8.71 0.00 6.53
20 21 3.400054 GGAGGTAAGTGGCCGCCT 61.400 66.667 14.07 1.56 41.84 5.52
21 22 2.125106 GAGGTAAGTGGCCGCCTG 60.125 66.667 14.07 0.00 0.00 4.85
58 59 4.969604 ACGAGACGCGCGTTCGTT 62.970 61.111 40.18 31.00 44.30 3.85
59 60 3.749373 CGAGACGCGCGTTCGTTT 61.749 61.111 36.19 23.55 43.42 3.60
60 61 2.201885 GAGACGCGCGTTCGTTTG 60.202 61.111 38.03 4.76 43.42 2.93
61 62 3.609422 GAGACGCGCGTTCGTTTGG 62.609 63.158 38.03 3.89 43.42 3.28
63 64 4.287967 ACGCGCGTTCGTTTGGTG 62.288 61.111 32.73 0.00 40.07 4.17
64 65 4.287967 CGCGCGTTCGTTTGGTGT 62.288 61.111 24.19 0.00 38.14 4.16
65 66 2.424640 GCGCGTTCGTTTGGTGTC 60.425 61.111 8.43 0.00 38.14 3.67
66 67 2.247267 CGCGTTCGTTTGGTGTCC 59.753 61.111 0.00 0.00 0.00 4.02
67 68 2.247267 GCGTTCGTTTGGTGTCCG 59.753 61.111 0.00 0.00 0.00 4.79
68 69 2.527867 GCGTTCGTTTGGTGTCCGT 61.528 57.895 0.00 0.00 0.00 4.69
69 70 1.561250 CGTTCGTTTGGTGTCCGTC 59.439 57.895 0.00 0.00 0.00 4.79
71 72 1.141449 TTCGTTTGGTGTCCGTCGT 59.859 52.632 0.00 0.00 0.00 4.34
72 73 1.146957 TTCGTTTGGTGTCCGTCGTG 61.147 55.000 0.00 0.00 0.00 4.35
73 74 1.589461 CGTTTGGTGTCCGTCGTGA 60.589 57.895 0.00 0.00 0.00 4.35
74 75 1.814211 CGTTTGGTGTCCGTCGTGAC 61.814 60.000 6.85 6.85 35.77 3.67
75 76 1.227321 TTTGGTGTCCGTCGTGACC 60.227 57.895 10.19 4.94 34.25 4.02
77 78 3.608662 GGTGTCCGTCGTGACCCA 61.609 66.667 10.19 0.00 34.25 4.51
79 80 1.227321 GTGTCCGTCGTGACCCAAA 60.227 57.895 10.19 0.00 34.25 3.28
80 81 1.227321 TGTCCGTCGTGACCCAAAC 60.227 57.895 10.19 0.00 34.25 2.93
81 82 1.957695 GTCCGTCGTGACCCAAACC 60.958 63.158 3.33 0.00 0.00 3.27
85 86 4.629523 TCGTGACCCAAACCCGGC 62.630 66.667 0.00 0.00 0.00 6.13
93 94 2.415426 CAAACCCGGCGCAAGTTT 59.585 55.556 10.83 12.71 41.68 2.66
94 95 1.948635 CAAACCCGGCGCAAGTTTG 60.949 57.895 24.85 24.85 42.93 2.93
103 104 4.607024 GCAAGTTTGCGCTCGAAA 57.393 50.000 9.73 0.00 45.11 3.46
105 106 0.704551 GCAAGTTTGCGCTCGAAATG 59.295 50.000 9.73 1.98 45.11 2.32
106 107 1.330306 CAAGTTTGCGCTCGAAATGG 58.670 50.000 9.73 0.00 0.00 3.16
108 109 0.889186 AGTTTGCGCTCGAAATGGGT 60.889 50.000 9.73 0.00 0.00 4.51
109 110 0.454452 GTTTGCGCTCGAAATGGGTC 60.454 55.000 9.73 0.00 0.00 4.46
110 111 1.906994 TTTGCGCTCGAAATGGGTCG 61.907 55.000 9.73 0.00 42.48 4.79
112 113 2.799540 GCGCTCGAAATGGGTCGAC 61.800 63.158 7.13 7.13 44.76 4.20
123 124 2.422591 GGTCGACCCGGACACAAA 59.577 61.111 24.75 0.00 38.70 2.83
125 126 1.501337 GGTCGACCCGGACACAAAAC 61.501 60.000 24.75 0.00 38.70 2.43
126 127 1.592131 TCGACCCGGACACAAAACG 60.592 57.895 0.73 0.00 0.00 3.60
127 128 2.600475 CGACCCGGACACAAAACGG 61.600 63.158 0.73 0.00 46.79 4.44
135 136 4.258935 CGGACACAAAACGGATAAGATG 57.741 45.455 0.00 0.00 0.00 2.90
139 140 4.007659 ACACAAAACGGATAAGATGGGTC 58.992 43.478 0.00 0.00 0.00 4.46
140 141 3.377172 CACAAAACGGATAAGATGGGTCC 59.623 47.826 0.00 0.00 0.00 4.46
147 148 1.755393 ATAAGATGGGTCCGGGTCGC 61.755 60.000 0.00 4.57 0.00 5.19
154 155 3.703127 GTCCGGGTCGCCTCCTTT 61.703 66.667 0.00 0.00 0.00 3.11
155 156 3.702048 TCCGGGTCGCCTCCTTTG 61.702 66.667 0.00 0.00 0.00 2.77
159 160 2.434359 GGTCGCCTCCTTTGTCCG 60.434 66.667 0.00 0.00 0.00 4.79
160 161 2.342648 GTCGCCTCCTTTGTCCGT 59.657 61.111 0.00 0.00 0.00 4.69
161 162 1.301479 GTCGCCTCCTTTGTCCGTT 60.301 57.895 0.00 0.00 0.00 4.44
164 165 1.070445 TCGCCTCCTTTGTCCGTTTTA 59.930 47.619 0.00 0.00 0.00 1.52
165 166 1.196127 CGCCTCCTTTGTCCGTTTTAC 59.804 52.381 0.00 0.00 0.00 2.01
166 167 1.538512 GCCTCCTTTGTCCGTTTTACC 59.461 52.381 0.00 0.00 0.00 2.85
167 168 2.156917 CCTCCTTTGTCCGTTTTACCC 58.843 52.381 0.00 0.00 0.00 3.69
168 169 2.156917 CTCCTTTGTCCGTTTTACCCC 58.843 52.381 0.00 0.00 0.00 4.95
171 172 2.694109 CCTTTGTCCGTTTTACCCCAAA 59.306 45.455 0.00 0.00 0.00 3.28
178 179 0.592637 GTTTTACCCCAAACGGACGG 59.407 55.000 0.00 0.00 0.00 4.79
179 180 0.536915 TTTTACCCCAAACGGACGGG 60.537 55.000 0.00 0.00 43.05 5.28
191 192 3.782443 GACGGGGCCGAACAGGAT 61.782 66.667 0.00 0.00 45.00 3.24
192 193 2.364579 ACGGGGCCGAACAGGATA 60.365 61.111 0.00 0.00 45.00 2.59
193 194 2.365095 GACGGGGCCGAACAGGATAG 62.365 65.000 0.00 0.00 45.00 2.08
195 196 2.819284 GGGGCCGAACAGGATAGGG 61.819 68.421 0.00 0.00 45.00 3.53
196 197 2.070650 GGGCCGAACAGGATAGGGT 61.071 63.158 0.00 0.00 45.00 4.34
198 199 1.067582 GCCGAACAGGATAGGGTCG 59.932 63.158 0.00 0.00 45.00 4.79
199 200 1.067582 CCGAACAGGATAGGGTCGC 59.932 63.158 0.00 0.00 45.00 5.19
202 203 3.426117 AACAGGATAGGGTCGCGCG 62.426 63.158 26.76 26.76 0.00 6.86
205 206 4.944372 GGATAGGGTCGCGCGGTG 62.944 72.222 31.69 1.17 0.00 4.94
206 207 4.944372 GATAGGGTCGCGCGGTGG 62.944 72.222 31.69 0.71 0.00 4.61
216 217 4.077184 CGCGGTGGAGTTGGCCTA 62.077 66.667 3.32 0.00 0.00 3.93
221 222 1.373812 GTGGAGTTGGCCTAACGGT 59.626 57.895 3.32 0.00 44.15 4.83
238 239 1.539827 CGGTGTTTCTCATTTGGACCC 59.460 52.381 0.00 0.00 0.00 4.46
249 250 4.848357 TCATTTGGACCCTCTTCATCTTC 58.152 43.478 0.00 0.00 0.00 2.87
257 258 4.904241 ACCCTCTTCATCTTCTTGAACAG 58.096 43.478 0.00 0.00 32.39 3.16
293 294 0.104304 AGGTGTGTCTCTTTTCGCGT 59.896 50.000 5.77 0.00 0.00 6.01
295 296 0.383124 GTGTGTCTCTTTTCGCGTGC 60.383 55.000 5.77 0.00 0.00 5.34
296 297 1.154836 GTGTCTCTTTTCGCGTGCG 60.155 57.895 5.77 8.14 41.35 5.34
329 331 5.591877 GCACCAAGAAGAATGTAGATCCAAT 59.408 40.000 0.00 0.00 0.00 3.16
331 333 7.363268 GCACCAAGAAGAATGTAGATCCAATTT 60.363 37.037 0.00 0.00 0.00 1.82
333 335 9.093458 ACCAAGAAGAATGTAGATCCAATTTTT 57.907 29.630 0.00 0.00 0.00 1.94
359 361 9.958180 TTTTTCAGAATCATGTAGTAGATCCAA 57.042 29.630 0.00 0.00 0.00 3.53
360 362 9.958180 TTTTCAGAATCATGTAGTAGATCCAAA 57.042 29.630 0.00 0.00 0.00 3.28
394 396 2.363306 ACATGTCACCTTGCTTGGAA 57.637 45.000 0.00 0.00 0.00 3.53
395 397 2.880443 ACATGTCACCTTGCTTGGAAT 58.120 42.857 0.00 0.00 0.00 3.01
398 400 2.942804 TGTCACCTTGCTTGGAATCAA 58.057 42.857 2.67 0.00 0.00 2.57
399 401 3.499338 TGTCACCTTGCTTGGAATCAAT 58.501 40.909 2.67 0.00 31.75 2.57
401 403 4.240096 GTCACCTTGCTTGGAATCAATTG 58.760 43.478 0.00 0.00 31.75 2.32
402 404 3.896888 TCACCTTGCTTGGAATCAATTGT 59.103 39.130 5.13 0.00 31.75 2.71
403 405 4.344679 TCACCTTGCTTGGAATCAATTGTT 59.655 37.500 5.13 0.00 31.75 2.83
404 406 4.687483 CACCTTGCTTGGAATCAATTGTTC 59.313 41.667 5.13 8.49 31.75 3.18
405 407 4.344679 ACCTTGCTTGGAATCAATTGTTCA 59.655 37.500 17.03 0.00 31.75 3.18
406 408 5.012354 ACCTTGCTTGGAATCAATTGTTCAT 59.988 36.000 17.03 0.00 31.75 2.57
408 410 6.128391 CCTTGCTTGGAATCAATTGTTCATTG 60.128 38.462 17.03 10.03 43.51 2.82
409 411 5.856156 TGCTTGGAATCAATTGTTCATTGT 58.144 33.333 17.03 0.00 42.79 2.71
411 413 7.613585 TGCTTGGAATCAATTGTTCATTGTAT 58.386 30.769 17.03 0.00 42.79 2.29
412 414 7.546316 TGCTTGGAATCAATTGTTCATTGTATG 59.454 33.333 17.03 0.00 42.79 2.39
413 415 7.010738 GCTTGGAATCAATTGTTCATTGTATGG 59.989 37.037 17.03 5.23 42.79 2.74
414 416 6.339730 TGGAATCAATTGTTCATTGTATGGC 58.660 36.000 17.03 0.00 42.79 4.40
416 418 6.407299 GGAATCAATTGTTCATTGTATGGCCT 60.407 38.462 3.32 0.00 42.79 5.19
417 419 7.201902 GGAATCAATTGTTCATTGTATGGCCTA 60.202 37.037 3.32 0.00 42.79 3.93
418 420 6.698008 TCAATTGTTCATTGTATGGCCTAG 57.302 37.500 3.32 0.00 42.79 3.02
419 421 5.067674 TCAATTGTTCATTGTATGGCCTAGC 59.932 40.000 3.32 0.00 42.79 3.42
422 424 4.535781 TGTTCATTGTATGGCCTAGCATT 58.464 39.130 3.32 0.00 0.00 3.56
424 426 5.421693 TGTTCATTGTATGGCCTAGCATTTT 59.578 36.000 3.32 0.00 0.00 1.82
425 427 5.772825 TCATTGTATGGCCTAGCATTTTC 57.227 39.130 3.32 0.00 0.00 2.29
427 429 5.655974 TCATTGTATGGCCTAGCATTTTCAA 59.344 36.000 3.32 0.00 0.00 2.69
429 431 6.543430 TTGTATGGCCTAGCATTTTCAAAT 57.457 33.333 3.32 0.00 0.00 2.32
430 432 6.543430 TGTATGGCCTAGCATTTTCAAATT 57.457 33.333 3.32 0.00 0.00 1.82
432 434 7.041107 TGTATGGCCTAGCATTTTCAAATTTC 58.959 34.615 3.32 0.00 0.00 2.17
433 435 4.493547 TGGCCTAGCATTTTCAAATTTCG 58.506 39.130 3.32 0.00 0.00 3.46
436 438 5.637387 GGCCTAGCATTTTCAAATTTCGAAA 59.363 36.000 13.91 13.91 0.00 3.46
438 440 7.009440 GCCTAGCATTTTCAAATTTCGAAAAC 58.991 34.615 15.66 13.86 43.17 2.43
439 441 7.219922 CCTAGCATTTTCAAATTTCGAAAACG 58.780 34.615 15.66 16.86 43.17 3.60
440 442 5.431309 AGCATTTTCAAATTTCGAAAACGC 58.569 33.333 23.69 23.69 46.43 4.84
441 443 5.193936 GCATTTTCAAATTTCGAAAACGCA 58.806 33.333 24.87 11.36 45.76 5.24
443 445 4.763594 TTTCAAATTTCGAAAACGCACC 57.236 36.364 15.66 0.00 29.63 5.01
444 446 3.422417 TCAAATTTCGAAAACGCACCA 57.578 38.095 15.66 0.00 0.00 4.17
445 447 3.109619 TCAAATTTCGAAAACGCACCAC 58.890 40.909 15.66 0.00 0.00 4.16
446 448 2.128367 AATTTCGAAAACGCACCACC 57.872 45.000 15.66 0.00 0.00 4.61
451 453 0.593773 CGAAAACGCACCACCCTTTG 60.594 55.000 0.00 0.00 0.00 2.77
453 455 0.458260 AAAACGCACCACCCTTTGTC 59.542 50.000 0.00 0.00 0.00 3.18
457 459 1.795170 CGCACCACCCTTTGTCCTTG 61.795 60.000 0.00 0.00 0.00 3.61
458 460 0.755327 GCACCACCCTTTGTCCTTGT 60.755 55.000 0.00 0.00 0.00 3.16
459 461 1.032014 CACCACCCTTTGTCCTTGTG 58.968 55.000 0.00 0.00 0.00 3.33
460 462 2.732289 CCACCCTTTGTCCTTGTGG 58.268 57.895 0.00 0.00 40.39 4.17
461 463 3.819245 CACCCTTTGTCCTTGTGGA 57.181 52.632 0.00 0.00 40.69 4.02
466 468 2.291800 CCCTTTGTCCTTGTGGATGGAT 60.292 50.000 0.00 0.00 45.29 3.41
467 469 2.756760 CCTTTGTCCTTGTGGATGGATG 59.243 50.000 0.00 0.00 45.29 3.51
468 470 3.561960 CCTTTGTCCTTGTGGATGGATGA 60.562 47.826 0.00 0.00 45.29 2.92
470 472 1.065199 TGTCCTTGTGGATGGATGAGC 60.065 52.381 0.00 0.00 45.29 4.26
471 473 1.065199 GTCCTTGTGGATGGATGAGCA 60.065 52.381 0.00 0.00 45.29 4.26
472 474 1.848388 TCCTTGTGGATGGATGAGCAT 59.152 47.619 0.00 0.00 37.46 3.79
473 475 1.954382 CCTTGTGGATGGATGAGCATG 59.046 52.381 0.00 0.00 34.57 4.06
474 476 2.422377 CCTTGTGGATGGATGAGCATGA 60.422 50.000 0.00 0.00 34.57 3.07
475 477 2.336945 TGTGGATGGATGAGCATGAC 57.663 50.000 0.00 0.00 0.00 3.06
477 479 0.475475 TGGATGGATGAGCATGACCC 59.525 55.000 0.00 0.00 0.00 4.46
478 480 0.251077 GGATGGATGAGCATGACCCC 60.251 60.000 0.00 0.00 0.00 4.95
479 481 0.604780 GATGGATGAGCATGACCCCG 60.605 60.000 0.00 0.00 0.00 5.73
480 482 2.060567 ATGGATGAGCATGACCCCGG 62.061 60.000 0.00 0.00 0.00 5.73
481 483 2.746375 GGATGAGCATGACCCCGGT 61.746 63.158 0.00 0.00 0.00 5.28
482 484 1.227674 GATGAGCATGACCCCGGTC 60.228 63.158 6.95 6.95 44.77 4.79
490 492 3.668386 GACCCCGGTCAAAAGCTG 58.332 61.111 9.06 0.00 44.02 4.24
491 493 1.228154 GACCCCGGTCAAAAGCTGT 60.228 57.895 9.06 0.00 44.02 4.40
492 494 1.228154 ACCCCGGTCAAAAGCTGTC 60.228 57.895 0.00 0.00 0.00 3.51
494 496 0.821711 CCCCGGTCAAAAGCTGTCAA 60.822 55.000 0.00 0.00 0.00 3.18
495 497 1.028905 CCCGGTCAAAAGCTGTCAAA 58.971 50.000 0.00 0.00 0.00 2.69
497 499 1.596954 CCGGTCAAAAGCTGTCAAACG 60.597 52.381 0.00 0.00 0.00 3.60
498 500 1.063469 CGGTCAAAAGCTGTCAAACGT 59.937 47.619 0.00 0.00 0.00 3.99
502 504 1.583404 CAAAAGCTGTCAAACGTGTGC 59.417 47.619 0.00 0.00 0.00 4.57
503 505 0.100503 AAAGCTGTCAAACGTGTGCC 59.899 50.000 0.00 0.00 0.00 5.01
504 506 1.724582 AAGCTGTCAAACGTGTGCCC 61.725 55.000 0.00 0.00 0.00 5.36
505 507 2.477176 GCTGTCAAACGTGTGCCCA 61.477 57.895 0.00 0.00 0.00 5.36
506 508 1.355210 CTGTCAAACGTGTGCCCAC 59.645 57.895 0.00 0.00 38.27 4.61
507 509 2.058829 CTGTCAAACGTGTGCCCACC 62.059 60.000 0.00 0.00 38.41 4.61
508 510 2.517402 TCAAACGTGTGCCCACCC 60.517 61.111 0.00 0.00 38.41 4.61
509 511 2.830827 CAAACGTGTGCCCACCCA 60.831 61.111 0.00 0.00 38.41 4.51
510 512 2.518349 AAACGTGTGCCCACCCAG 60.518 61.111 0.00 0.00 38.41 4.45
517 519 3.731728 TGCCCACCCAGCAGGATC 61.732 66.667 0.00 0.00 39.89 3.36
518 520 4.512914 GCCCACCCAGCAGGATCC 62.513 72.222 2.48 2.48 39.89 3.36
520 522 2.750657 CCCACCCAGCAGGATCCTC 61.751 68.421 12.69 7.20 39.89 3.71
521 523 2.750657 CCACCCAGCAGGATCCTCC 61.751 68.421 12.69 1.60 39.89 4.30
522 524 2.765807 ACCCAGCAGGATCCTCCG 60.766 66.667 12.69 2.46 42.75 4.63
525 527 2.801631 CCAGCAGGATCCTCCGTCC 61.802 68.421 12.69 0.00 42.75 4.79
527 529 1.456705 AGCAGGATCCTCCGTCCTC 60.457 63.158 12.69 0.00 44.18 3.71
528 530 1.456705 GCAGGATCCTCCGTCCTCT 60.457 63.158 12.69 0.00 44.18 3.69
530 532 1.036707 CAGGATCCTCCGTCCTCTTC 58.963 60.000 12.69 0.00 44.18 2.87
531 533 0.631753 AGGATCCTCCGTCCTCTTCA 59.368 55.000 9.02 0.00 42.38 3.02
533 535 2.043227 GGATCCTCCGTCCTCTTCAAT 58.957 52.381 3.84 0.00 32.85 2.57
534 536 3.117093 AGGATCCTCCGTCCTCTTCAATA 60.117 47.826 9.02 0.00 42.38 1.90
535 537 3.257127 GGATCCTCCGTCCTCTTCAATAG 59.743 52.174 3.84 0.00 32.85 1.73
539 541 2.022195 TCCGTCCTCTTCAATAGACCG 58.978 52.381 0.00 0.00 0.00 4.79
542 544 2.223525 CGTCCTCTTCAATAGACCGGTC 60.224 54.545 27.67 27.67 0.00 4.79
546 548 2.422479 CTCTTCAATAGACCGGTCGACA 59.578 50.000 28.26 17.88 34.09 4.35
548 550 0.448990 TCAATAGACCGGTCGACACG 59.551 55.000 28.26 17.44 34.09 4.49
550 552 0.169672 AATAGACCGGTCGACACGTG 59.830 55.000 28.26 15.48 34.09 4.49
576 578 3.821886 CCCCCTCCGTCCTCTTTT 58.178 61.111 0.00 0.00 0.00 2.27
577 579 1.602771 CCCCCTCCGTCCTCTTTTC 59.397 63.158 0.00 0.00 0.00 2.29
579 581 0.036294 CCCCTCCGTCCTCTTTTCAC 60.036 60.000 0.00 0.00 0.00 3.18
580 582 0.036294 CCCTCCGTCCTCTTTTCACC 60.036 60.000 0.00 0.00 0.00 4.02
584 586 0.389948 CCGTCCTCTTTTCACCTCCG 60.390 60.000 0.00 0.00 0.00 4.63
586 588 0.673956 GTCCTCTTTTCACCTCCGCC 60.674 60.000 0.00 0.00 0.00 6.13
587 589 0.836400 TCCTCTTTTCACCTCCGCCT 60.836 55.000 0.00 0.00 0.00 5.52
588 590 0.391793 CCTCTTTTCACCTCCGCCTC 60.392 60.000 0.00 0.00 0.00 4.70
589 591 0.737715 CTCTTTTCACCTCCGCCTCG 60.738 60.000 0.00 0.00 0.00 4.63
591 593 1.005394 TTTTCACCTCCGCCTCGTC 60.005 57.895 0.00 0.00 0.00 4.20
592 594 1.750341 TTTTCACCTCCGCCTCGTCA 61.750 55.000 0.00 0.00 0.00 4.35
593 595 2.154798 TTTCACCTCCGCCTCGTCAG 62.155 60.000 0.00 0.00 0.00 3.51
594 596 4.803426 CACCTCCGCCTCGTCAGC 62.803 72.222 0.00 0.00 0.00 4.26
597 599 2.415608 CCTCCGCCTCGTCAGCTAA 61.416 63.158 0.00 0.00 0.00 3.09
603 605 1.826024 CCTCGTCAGCTAAGGGCAT 59.174 57.895 0.00 0.00 44.79 4.40
604 606 0.531532 CCTCGTCAGCTAAGGGCATG 60.532 60.000 0.00 0.00 44.79 4.06
608 610 1.134818 CGTCAGCTAAGGGCATGTACA 60.135 52.381 0.00 0.00 44.79 2.90
609 611 2.676750 CGTCAGCTAAGGGCATGTACAA 60.677 50.000 0.00 0.00 44.79 2.41
610 612 3.545703 GTCAGCTAAGGGCATGTACAAT 58.454 45.455 0.00 0.00 44.79 2.71
611 613 3.313526 GTCAGCTAAGGGCATGTACAATG 59.686 47.826 0.00 0.12 44.79 2.82
612 614 2.033801 CAGCTAAGGGCATGTACAATGC 59.966 50.000 17.01 17.01 44.79 3.56
613 615 2.023673 GCTAAGGGCATGTACAATGCA 58.976 47.619 22.92 0.00 46.21 3.96
617 619 2.233271 AGGGCATGTACAATGCATAGC 58.767 47.619 22.92 11.42 46.21 2.97
618 620 1.270550 GGGCATGTACAATGCATAGCC 59.729 52.381 22.92 16.30 46.21 3.93
620 622 2.227388 GGCATGTACAATGCATAGCCTC 59.773 50.000 22.92 7.94 46.21 4.70
623 625 4.615223 GCATGTACAATGCATAGCCTCATG 60.615 45.833 19.12 18.62 44.00 3.07
626 628 2.304092 ACAATGCATAGCCTCATGGTG 58.696 47.619 0.00 0.00 35.27 4.17
629 631 2.265589 TGCATAGCCTCATGGTGATG 57.734 50.000 0.00 0.00 35.27 3.07
631 633 1.531423 CATAGCCTCATGGTGATGCC 58.469 55.000 4.03 0.00 38.54 4.40
634 636 1.890979 GCCTCATGGTGATGCCTCG 60.891 63.158 0.00 0.00 32.86 4.63
636 638 1.153309 CTCATGGTGATGCCTCGCA 60.153 57.895 4.90 0.00 44.86 5.10
645 647 2.588989 TGCCTCGCATGCCATGTA 59.411 55.556 13.15 0.00 31.71 2.29
647 649 2.256591 GCCTCGCATGCCATGTAGG 61.257 63.158 18.53 18.53 38.09 3.18
648 650 1.447217 CCTCGCATGCCATGTAGGA 59.553 57.895 18.19 8.22 41.22 2.94
654 656 1.339438 GCATGCCATGTAGGATCGGAT 60.339 52.381 6.36 0.00 41.22 4.18
656 658 3.432749 GCATGCCATGTAGGATCGGATAT 60.433 47.826 6.36 0.00 41.22 1.63
657 659 3.893326 TGCCATGTAGGATCGGATATG 57.107 47.619 0.00 0.00 41.22 1.78
658 660 3.440127 TGCCATGTAGGATCGGATATGA 58.560 45.455 0.00 0.00 41.22 2.15
659 661 3.195610 TGCCATGTAGGATCGGATATGAC 59.804 47.826 0.00 0.00 41.22 3.06
660 662 3.735208 GCCATGTAGGATCGGATATGACG 60.735 52.174 0.00 0.00 41.22 4.35
661 663 3.444034 CCATGTAGGATCGGATATGACGT 59.556 47.826 0.00 0.00 41.22 4.34
662 664 4.638865 CCATGTAGGATCGGATATGACGTA 59.361 45.833 0.00 0.00 41.22 3.57
663 665 5.124936 CCATGTAGGATCGGATATGACGTAA 59.875 44.000 0.00 0.00 41.22 3.18
664 666 6.349860 CCATGTAGGATCGGATATGACGTAAA 60.350 42.308 0.00 0.00 41.22 2.01
667 669 6.936335 TGTAGGATCGGATATGACGTAAAGTA 59.064 38.462 0.00 0.00 0.00 2.24
668 670 6.497785 AGGATCGGATATGACGTAAAGTAG 57.502 41.667 0.00 0.00 0.00 2.57
670 672 5.182760 GGATCGGATATGACGTAAAGTAGGT 59.817 44.000 0.00 0.00 0.00 3.08
672 674 6.064846 TCGGATATGACGTAAAGTAGGTTC 57.935 41.667 0.00 0.00 0.00 3.62
673 675 4.908156 CGGATATGACGTAAAGTAGGTTCG 59.092 45.833 0.00 0.00 0.00 3.95
674 676 5.218139 GGATATGACGTAAAGTAGGTTCGG 58.782 45.833 0.00 0.00 0.00 4.30
676 678 4.996788 ATGACGTAAAGTAGGTTCGGAT 57.003 40.909 0.00 0.00 0.00 4.18
677 679 7.094634 GGATATGACGTAAAGTAGGTTCGGATA 60.095 40.741 0.00 0.00 0.00 2.59
679 681 4.336433 TGACGTAAAGTAGGTTCGGATAGG 59.664 45.833 0.00 0.00 0.00 2.57
680 682 3.633986 ACGTAAAGTAGGTTCGGATAGGG 59.366 47.826 0.00 0.00 0.00 3.53
681 683 3.885297 CGTAAAGTAGGTTCGGATAGGGA 59.115 47.826 0.00 0.00 0.00 4.20
683 685 5.506982 CGTAAAGTAGGTTCGGATAGGGAAG 60.507 48.000 0.00 0.00 0.00 3.46
686 688 1.069258 GGTTCGGATAGGGAAGCGG 59.931 63.158 0.00 0.00 32.96 5.52
687 689 1.069258 GTTCGGATAGGGAAGCGGG 59.931 63.158 0.00 0.00 0.00 6.13
688 690 1.075822 TTCGGATAGGGAAGCGGGA 60.076 57.895 0.00 0.00 0.00 5.14
690 692 0.898789 TCGGATAGGGAAGCGGGATC 60.899 60.000 0.00 0.00 0.00 3.36
692 694 0.545548 GGATAGGGAAGCGGGATCCT 60.546 60.000 12.58 0.00 37.14 3.24
694 696 1.700186 GATAGGGAAGCGGGATCCTTT 59.300 52.381 12.58 4.04 37.14 3.11
695 697 1.129058 TAGGGAAGCGGGATCCTTTC 58.871 55.000 12.58 12.70 37.14 2.62
696 698 1.152943 GGGAAGCGGGATCCTTTCC 60.153 63.158 23.71 23.71 44.62 3.13
716 718 1.002430 CAGTAGGCTGGTGCTTGAAGA 59.998 52.381 0.00 0.00 39.01 2.87
720 722 1.143684 AGGCTGGTGCTTGAAGAGAAA 59.856 47.619 0.00 0.00 39.59 2.52
723 725 3.551659 GGCTGGTGCTTGAAGAGAAAAAG 60.552 47.826 0.00 0.00 39.59 2.27
724 726 3.067320 GCTGGTGCTTGAAGAGAAAAAGT 59.933 43.478 0.00 0.00 36.03 2.66
725 727 4.604976 CTGGTGCTTGAAGAGAAAAAGTG 58.395 43.478 0.00 0.00 0.00 3.16
728 730 4.096382 GGTGCTTGAAGAGAAAAAGTGTGA 59.904 41.667 0.00 0.00 0.00 3.58
729 731 5.221126 GGTGCTTGAAGAGAAAAAGTGTGAT 60.221 40.000 0.00 0.00 0.00 3.06
730 732 6.268566 GTGCTTGAAGAGAAAAAGTGTGATT 58.731 36.000 0.00 0.00 0.00 2.57
732 734 5.622856 GCTTGAAGAGAAAAAGTGTGATTCG 59.377 40.000 0.00 0.00 0.00 3.34
733 735 5.673337 TGAAGAGAAAAAGTGTGATTCGG 57.327 39.130 0.00 0.00 0.00 4.30
734 736 5.123227 TGAAGAGAAAAAGTGTGATTCGGT 58.877 37.500 0.00 0.00 0.00 4.69
737 739 4.511826 AGAGAAAAAGTGTGATTCGGTGAC 59.488 41.667 0.00 0.00 0.00 3.67
739 741 4.638421 AGAAAAAGTGTGATTCGGTGACAA 59.362 37.500 0.00 0.00 0.00 3.18
742 744 4.552166 AAGTGTGATTCGGTGACAAAAG 57.448 40.909 0.00 0.00 0.00 2.27
743 745 2.290641 AGTGTGATTCGGTGACAAAAGC 59.709 45.455 0.00 0.00 0.00 3.51
745 747 2.290367 TGTGATTCGGTGACAAAAGCTG 59.710 45.455 0.00 0.00 0.00 4.24
746 748 2.548057 GTGATTCGGTGACAAAAGCTGA 59.452 45.455 0.00 0.00 0.00 4.26
748 750 3.629855 TGATTCGGTGACAAAAGCTGAAA 59.370 39.130 0.00 0.00 0.00 2.69
750 752 3.691049 TCGGTGACAAAAGCTGAAAAG 57.309 42.857 0.00 0.00 0.00 2.27
751 753 3.275143 TCGGTGACAAAAGCTGAAAAGA 58.725 40.909 0.00 0.00 0.00 2.52
752 754 3.882888 TCGGTGACAAAAGCTGAAAAGAT 59.117 39.130 0.00 0.00 0.00 2.40
755 757 4.746611 GGTGACAAAAGCTGAAAAGATTGG 59.253 41.667 0.00 0.00 0.00 3.16
756 758 5.451798 GGTGACAAAAGCTGAAAAGATTGGA 60.452 40.000 0.00 0.00 0.00 3.53
757 759 5.689068 GTGACAAAAGCTGAAAAGATTGGAG 59.311 40.000 0.00 0.00 0.00 3.86
759 761 5.594926 ACAAAAGCTGAAAAGATTGGAGTG 58.405 37.500 0.00 0.00 0.00 3.51
761 763 6.127366 ACAAAAGCTGAAAAGATTGGAGTGAA 60.127 34.615 0.00 0.00 0.00 3.18
762 764 6.469782 AAAGCTGAAAAGATTGGAGTGAAA 57.530 33.333 0.00 0.00 0.00 2.69
763 765 6.469782 AAGCTGAAAAGATTGGAGTGAAAA 57.530 33.333 0.00 0.00 0.00 2.29
764 766 6.081872 AGCTGAAAAGATTGGAGTGAAAAG 57.918 37.500 0.00 0.00 0.00 2.27
765 767 5.595952 AGCTGAAAAGATTGGAGTGAAAAGT 59.404 36.000 0.00 0.00 0.00 2.66
766 768 6.772716 AGCTGAAAAGATTGGAGTGAAAAGTA 59.227 34.615 0.00 0.00 0.00 2.24
767 769 7.040823 AGCTGAAAAGATTGGAGTGAAAAGTAG 60.041 37.037 0.00 0.00 0.00 2.57
768 770 7.041098 GCTGAAAAGATTGGAGTGAAAAGTAGA 60.041 37.037 0.00 0.00 0.00 2.59
769 771 8.383318 TGAAAAGATTGGAGTGAAAAGTAGAG 57.617 34.615 0.00 0.00 0.00 2.43
770 772 8.210946 TGAAAAGATTGGAGTGAAAAGTAGAGA 58.789 33.333 0.00 0.00 0.00 3.10
776 778 8.954950 ATTGGAGTGAAAAGTAGAGATACATG 57.045 34.615 0.00 0.00 0.00 3.21
777 779 7.482169 TGGAGTGAAAAGTAGAGATACATGT 57.518 36.000 2.69 2.69 0.00 3.21
778 780 7.323420 TGGAGTGAAAAGTAGAGATACATGTG 58.677 38.462 9.11 0.00 0.00 3.21
781 783 9.509855 GAGTGAAAAGTAGAGATACATGTGTAG 57.490 37.037 9.11 0.00 33.52 2.74
787 789 9.908747 AAAGTAGAGATACATGTGTAGTAGTCT 57.091 33.333 9.11 3.61 33.52 3.24
789 791 9.908747 AGTAGAGATACATGTGTAGTAGTCTTT 57.091 33.333 9.11 0.00 33.52 2.52
825 827 8.801882 TTTTTAATGAGGTCCATTAGTGGTAG 57.198 34.615 3.93 0.00 45.46 3.18
826 828 4.423625 AATGAGGTCCATTAGTGGTAGC 57.576 45.455 3.93 1.57 46.16 3.58
827 829 3.116096 TGAGGTCCATTAGTGGTAGCT 57.884 47.619 3.93 6.20 46.16 3.32
831 833 2.355716 GGTCCATTAGTGGTAGCTTGCA 60.356 50.000 3.93 0.00 46.16 4.08
832 834 3.545703 GTCCATTAGTGGTAGCTTGCAT 58.454 45.455 3.93 0.00 46.16 3.96
836 838 2.418368 TAGTGGTAGCTTGCATTGGG 57.582 50.000 0.00 0.00 0.00 4.12
837 839 0.323725 AGTGGTAGCTTGCATTGGGG 60.324 55.000 0.00 0.00 0.00 4.96
839 841 0.034186 TGGTAGCTTGCATTGGGGAG 60.034 55.000 0.00 0.00 0.00 4.30
841 843 1.340991 GGTAGCTTGCATTGGGGAGAA 60.341 52.381 0.00 0.00 0.00 2.87
842 844 2.446435 GTAGCTTGCATTGGGGAGAAA 58.554 47.619 0.00 0.00 0.00 2.52
843 845 2.014010 AGCTTGCATTGGGGAGAAAA 57.986 45.000 0.00 0.00 0.00 2.29
844 846 2.328319 AGCTTGCATTGGGGAGAAAAA 58.672 42.857 0.00 0.00 0.00 1.94
910 912 7.870509 ATGTATCCATATGCCATCATTGTAC 57.129 36.000 0.00 0.00 34.22 2.90
912 914 7.404481 TGTATCCATATGCCATCATTGTACAT 58.596 34.615 0.00 0.00 34.22 2.29
913 915 6.769134 ATCCATATGCCATCATTGTACATG 57.231 37.500 0.00 0.00 34.22 3.21
915 917 4.381185 CCATATGCCATCATTGTACATGCC 60.381 45.833 0.00 0.00 34.22 4.40
916 918 1.401761 TGCCATCATTGTACATGCCC 58.598 50.000 0.00 0.00 0.00 5.36
917 919 1.063792 TGCCATCATTGTACATGCCCT 60.064 47.619 0.00 0.00 0.00 5.19
920 922 3.636300 GCCATCATTGTACATGCCCTAAA 59.364 43.478 0.00 0.00 0.00 1.85
921 923 4.261741 GCCATCATTGTACATGCCCTAAAG 60.262 45.833 0.00 0.00 0.00 1.85
935 2736 3.308188 GCCCTAAAGCTCCAACCTTTCTA 60.308 47.826 0.00 0.00 34.58 2.10
937 2738 4.884164 CCCTAAAGCTCCAACCTTTCTATG 59.116 45.833 0.00 0.00 34.58 2.23
940 2741 3.636153 AGCTCCAACCTTTCTATGGTC 57.364 47.619 0.00 0.00 36.69 4.02
943 2744 3.682999 GCTCCAACCTTTCTATGGTCTCC 60.683 52.174 0.00 0.00 36.69 3.71
944 2745 3.777522 CTCCAACCTTTCTATGGTCTCCT 59.222 47.826 0.00 0.00 36.69 3.69
945 2746 4.175962 TCCAACCTTTCTATGGTCTCCTT 58.824 43.478 0.00 0.00 36.69 3.36
946 2747 4.225267 TCCAACCTTTCTATGGTCTCCTTC 59.775 45.833 0.00 0.00 36.69 3.46
963 2771 5.426833 TCTCCTTCCTTCCTTCTCAATAAGG 59.573 44.000 0.00 0.00 46.35 2.69
1393 4185 2.202743 CATCGACCGCGTCATGGT 60.203 61.111 4.92 0.00 44.10 3.55
1844 4727 3.202151 TCTGTCCAAACTCTCCAAACCTT 59.798 43.478 0.00 0.00 0.00 3.50
1855 4738 3.315191 TCTCCAAACCTTTGCTCTTTTCG 59.685 43.478 0.00 0.00 36.86 3.46
1922 4829 2.293677 TCTGACGGTCGAATCCATTG 57.706 50.000 3.34 0.00 0.00 2.82
1943 4856 4.711949 CGCTTGCTGCAGGAGGGT 62.712 66.667 18.82 0.00 43.06 4.34
1944 4857 2.282745 GCTTGCTGCAGGAGGGTT 60.283 61.111 18.82 0.00 42.31 4.11
1945 4858 1.905354 GCTTGCTGCAGGAGGGTTT 60.905 57.895 18.82 0.00 42.31 3.27
1946 4859 1.871126 GCTTGCTGCAGGAGGGTTTC 61.871 60.000 18.82 0.00 42.31 2.78
1947 4860 0.251077 CTTGCTGCAGGAGGGTTTCT 60.251 55.000 17.12 0.00 0.00 2.52
1948 4861 1.003580 CTTGCTGCAGGAGGGTTTCTA 59.996 52.381 17.12 0.00 0.00 2.10
1949 4862 1.289160 TGCTGCAGGAGGGTTTCTAT 58.711 50.000 17.12 0.00 0.00 1.98
1950 4863 1.065199 TGCTGCAGGAGGGTTTCTATG 60.065 52.381 17.12 0.00 0.00 2.23
2025 5126 7.704899 GCTCTCCTTATCAGTCTTCTCTTTAAC 59.295 40.741 0.00 0.00 0.00 2.01
2037 5138 8.097662 AGTCTTCTCTTTAACTTACCAATCCAG 58.902 37.037 0.00 0.00 0.00 3.86
2038 5144 8.095169 GTCTTCTCTTTAACTTACCAATCCAGA 58.905 37.037 0.00 0.00 0.00 3.86
2112 5236 6.026513 GTGCTCTTCTATTTGTGCTCAATTC 58.973 40.000 1.43 0.00 33.32 2.17
2308 5470 0.874390 GCTGCATCTTGTTCGTGGAA 59.126 50.000 0.00 0.00 0.00 3.53
2402 5577 7.014134 TGTTCTCTAATGCCATTTTTCTGTTCA 59.986 33.333 0.00 0.00 0.00 3.18
2447 5629 6.201425 CCCAGTTTGTGAATCATGTTTTCTTG 59.799 38.462 10.87 0.00 0.00 3.02
2448 5630 6.979817 CCAGTTTGTGAATCATGTTTTCTTGA 59.020 34.615 10.87 0.00 38.14 3.02
2493 5677 2.488153 GTGTTTGGCAATCCTCCTACAC 59.512 50.000 11.85 11.85 34.93 2.90
2519 5730 3.322211 TTTTTAGCCGAATCGTCCTGA 57.678 42.857 0.82 0.00 0.00 3.86
2534 5745 3.310774 CGTCCTGAATGCTGGTTTATCTG 59.689 47.826 0.00 0.00 34.91 2.90
2538 5749 4.272489 CTGAATGCTGGTTTATCTGGGAA 58.728 43.478 0.00 0.00 0.00 3.97
2550 5763 6.462347 GGTTTATCTGGGAAAGTTTGCTTGAA 60.462 38.462 7.08 0.00 34.71 2.69
2577 5791 2.752354 TGTTATCCAGAATGTTTGGCGG 59.248 45.455 0.00 0.00 35.62 6.13
2584 5798 0.603065 GAATGTTTGGCGGCCTTCTT 59.397 50.000 21.46 6.58 0.00 2.52
2586 5800 0.251341 ATGTTTGGCGGCCTTCTTCT 60.251 50.000 21.46 0.00 0.00 2.85
2588 5802 1.202830 TGTTTGGCGGCCTTCTTCTTA 60.203 47.619 21.46 0.00 0.00 2.10
2607 5821 9.283768 TCTTCTTAATGTCATTATGTGTGTTGT 57.716 29.630 14.76 0.00 0.00 3.32
2608 5822 9.897744 CTTCTTAATGTCATTATGTGTGTTGTT 57.102 29.630 14.76 0.00 0.00 2.83
2609 5823 9.891828 TTCTTAATGTCATTATGTGTGTTGTTC 57.108 29.630 14.76 0.00 0.00 3.18
2610 5824 9.283768 TCTTAATGTCATTATGTGTGTTGTTCT 57.716 29.630 14.76 0.00 0.00 3.01
2611 5825 9.333497 CTTAATGTCATTATGTGTGTTGTTCTG 57.667 33.333 6.11 0.00 0.00 3.02
2612 5826 7.509141 AATGTCATTATGTGTGTTGTTCTGA 57.491 32.000 0.00 0.00 0.00 3.27
2616 5830 7.017645 GTCATTATGTGTGTTGTTCTGATGTC 58.982 38.462 0.00 0.00 0.00 3.06
2623 5852 4.246458 GTGTTGTTCTGATGTCCCTACTC 58.754 47.826 0.00 0.00 0.00 2.59
2708 5995 3.306917 TGATTTCAGTTGCATTGCTGG 57.693 42.857 10.49 0.00 33.81 4.85
2778 6070 6.716628 TCTCTAGTTCATGCAACCTTTTGATT 59.283 34.615 0.00 0.00 35.28 2.57
2792 6084 2.542020 TTGATTTCAGTGCAGTCGGA 57.458 45.000 0.00 0.00 0.00 4.55
2827 6126 2.991190 CTGCATGCTCCAAATTTGTGTC 59.009 45.455 20.33 5.78 0.00 3.67
2960 6260 0.239082 CAGATTGCAGTTTCAGCGCA 59.761 50.000 11.47 0.00 33.85 6.09
2961 6261 1.135489 CAGATTGCAGTTTCAGCGCAT 60.135 47.619 11.47 0.00 35.19 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.267961 CGGCCACTTACCTCCCAC 59.732 66.667 2.24 0.00 0.00 4.61
1 2 3.712907 GCGGCCACTTACCTCCCA 61.713 66.667 2.24 0.00 0.00 4.37
2 3 4.484872 GGCGGCCACTTACCTCCC 62.485 72.222 15.62 0.00 0.00 4.30
5 6 4.410400 GCAGGCGGCCACTTACCT 62.410 66.667 23.09 0.00 36.11 3.08
44 45 3.698463 CCAAACGAACGCGCGTCT 61.698 61.111 37.77 25.33 44.86 4.18
45 46 3.992019 ACCAAACGAACGCGCGTC 61.992 61.111 37.77 26.32 44.86 5.19
48 49 2.424640 GACACCAAACGAACGCGC 60.425 61.111 5.73 0.00 42.48 6.86
49 50 2.247267 GGACACCAAACGAACGCG 59.753 61.111 3.53 3.53 44.79 6.01
50 51 2.247267 CGGACACCAAACGAACGC 59.753 61.111 0.00 0.00 0.00 4.84
53 54 1.141449 ACGACGGACACCAAACGAA 59.859 52.632 0.00 0.00 0.00 3.85
55 56 1.589461 TCACGACGGACACCAAACG 60.589 57.895 0.00 0.00 0.00 3.60
56 57 1.493134 GGTCACGACGGACACCAAAC 61.493 60.000 15.29 0.00 39.59 2.93
58 59 2.418356 GGTCACGACGGACACCAA 59.582 61.111 15.29 0.00 39.59 3.67
59 60 3.608662 GGGTCACGACGGACACCA 61.609 66.667 15.29 0.00 39.59 4.17
60 61 2.647680 TTTGGGTCACGACGGACACC 62.648 60.000 13.76 13.10 40.55 4.16
61 62 1.227321 TTTGGGTCACGACGGACAC 60.227 57.895 15.29 13.06 41.65 3.67
63 64 1.957695 GGTTTGGGTCACGACGGAC 60.958 63.158 0.00 3.87 37.06 4.79
64 65 2.422591 GGTTTGGGTCACGACGGA 59.577 61.111 0.00 0.00 0.00 4.69
65 66 2.667199 GGGTTTGGGTCACGACGG 60.667 66.667 0.00 0.00 0.00 4.79
66 67 3.039588 CGGGTTTGGGTCACGACG 61.040 66.667 0.00 0.00 33.17 5.12
67 68 2.667199 CCGGGTTTGGGTCACGAC 60.667 66.667 0.00 0.00 33.17 4.34
68 69 4.629523 GCCGGGTTTGGGTCACGA 62.630 66.667 2.18 0.00 33.17 4.35
75 76 3.145422 AAACTTGCGCCGGGTTTGG 62.145 57.895 17.28 0.00 32.84 3.28
77 78 2.415426 CAAACTTGCGCCGGGTTT 59.585 55.556 4.18 10.66 34.10 3.27
87 88 1.330306 CCATTTCGAGCGCAAACTTG 58.670 50.000 11.47 0.00 0.00 3.16
89 90 0.889186 ACCCATTTCGAGCGCAAACT 60.889 50.000 11.47 0.00 0.00 2.66
90 91 0.454452 GACCCATTTCGAGCGCAAAC 60.454 55.000 11.47 0.00 0.00 2.93
93 94 2.813474 CGACCCATTTCGAGCGCA 60.813 61.111 11.47 0.00 41.78 6.09
94 95 2.508439 TCGACCCATTTCGAGCGC 60.508 61.111 0.00 0.00 43.01 5.92
106 107 1.227615 TTTTGTGTCCGGGTCGACC 60.228 57.895 27.04 27.04 31.35 4.79
108 109 1.592131 CGTTTTGTGTCCGGGTCGA 60.592 57.895 0.00 0.00 0.00 4.20
109 110 2.600475 CCGTTTTGTGTCCGGGTCG 61.600 63.158 0.00 0.00 38.09 4.79
110 111 0.604511 ATCCGTTTTGTGTCCGGGTC 60.605 55.000 0.00 0.00 41.98 4.46
112 113 1.735571 CTTATCCGTTTTGTGTCCGGG 59.264 52.381 0.00 0.00 41.98 5.73
115 116 3.377172 CCCATCTTATCCGTTTTGTGTCC 59.623 47.826 0.00 0.00 0.00 4.02
117 118 4.007659 GACCCATCTTATCCGTTTTGTGT 58.992 43.478 0.00 0.00 0.00 3.72
118 119 3.377172 GGACCCATCTTATCCGTTTTGTG 59.623 47.826 0.00 0.00 0.00 3.33
126 127 0.685660 GACCCGGACCCATCTTATCC 59.314 60.000 0.73 0.00 0.00 2.59
127 128 0.317479 CGACCCGGACCCATCTTATC 59.683 60.000 0.73 0.00 0.00 1.75
130 131 3.782443 GCGACCCGGACCCATCTT 61.782 66.667 0.73 0.00 0.00 2.40
139 140 3.952628 GACAAAGGAGGCGACCCGG 62.953 68.421 0.00 0.00 35.76 5.73
140 141 2.434359 GACAAAGGAGGCGACCCG 60.434 66.667 0.00 0.00 35.76 5.28
143 144 0.883370 AAACGGACAAAGGAGGCGAC 60.883 55.000 0.00 0.00 0.00 5.19
147 148 2.156917 GGGTAAAACGGACAAAGGAGG 58.843 52.381 0.00 0.00 0.00 4.30
148 149 2.156917 GGGGTAAAACGGACAAAGGAG 58.843 52.381 0.00 0.00 0.00 3.69
149 150 1.493871 TGGGGTAAAACGGACAAAGGA 59.506 47.619 0.00 0.00 0.00 3.36
151 152 3.708890 GTTTGGGGTAAAACGGACAAAG 58.291 45.455 0.00 0.00 30.90 2.77
159 160 0.592637 CCGTCCGTTTGGGGTAAAAC 59.407 55.000 0.00 0.00 36.81 2.43
160 161 0.536915 CCCGTCCGTTTGGGGTAAAA 60.537 55.000 0.00 0.00 42.05 1.52
161 162 1.072852 CCCGTCCGTTTGGGGTAAA 59.927 57.895 0.00 0.00 42.05 2.01
175 176 2.364579 TATCCTGTTCGGCCCCGT 60.365 61.111 6.61 0.00 40.74 5.28
176 177 2.421739 CTATCCTGTTCGGCCCCG 59.578 66.667 0.00 0.00 41.35 5.73
177 178 2.819284 CCCTATCCTGTTCGGCCCC 61.819 68.421 0.00 0.00 0.00 5.80
178 179 2.041206 GACCCTATCCTGTTCGGCCC 62.041 65.000 0.00 0.00 0.00 5.80
179 180 1.446366 GACCCTATCCTGTTCGGCC 59.554 63.158 0.00 0.00 0.00 6.13
180 181 1.067582 CGACCCTATCCTGTTCGGC 59.932 63.158 0.00 0.00 0.00 5.54
181 182 1.067582 GCGACCCTATCCTGTTCGG 59.932 63.158 0.00 0.00 0.00 4.30
199 200 3.599285 TTAGGCCAACTCCACCGCG 62.599 63.158 5.01 0.00 0.00 6.46
202 203 1.376812 CCGTTAGGCCAACTCCACC 60.377 63.158 5.01 0.00 34.77 4.61
205 206 0.250597 AACACCGTTAGGCCAACTCC 60.251 55.000 5.01 0.00 42.76 3.85
206 207 1.534163 GAAACACCGTTAGGCCAACTC 59.466 52.381 5.01 0.00 42.76 3.01
207 208 1.142262 AGAAACACCGTTAGGCCAACT 59.858 47.619 5.01 0.00 42.76 3.16
208 209 1.534163 GAGAAACACCGTTAGGCCAAC 59.466 52.381 5.01 6.76 42.76 3.77
209 210 1.141254 TGAGAAACACCGTTAGGCCAA 59.859 47.619 5.01 0.00 42.76 4.52
210 211 0.759959 TGAGAAACACCGTTAGGCCA 59.240 50.000 5.01 0.00 42.76 5.36
216 217 2.621526 GGTCCAAATGAGAAACACCGTT 59.378 45.455 0.00 0.00 0.00 4.44
221 222 4.141274 TGAAGAGGGTCCAAATGAGAAACA 60.141 41.667 0.00 0.00 0.00 2.83
238 239 3.688673 GGCCTGTTCAAGAAGATGAAGAG 59.311 47.826 0.00 7.09 45.43 2.85
249 250 2.012673 GCATAGAGTGGCCTGTTCAAG 58.987 52.381 3.32 0.00 0.00 3.02
333 335 9.958180 TTGGATCTACTACATGATTCTGAAAAA 57.042 29.630 0.00 0.00 0.00 1.94
334 336 9.958180 TTTGGATCTACTACATGATTCTGAAAA 57.042 29.630 0.00 0.00 0.00 2.29
371 373 3.450457 TCCAAGCAAGGTGACATGTTTTT 59.550 39.130 0.00 0.00 29.79 1.94
372 374 3.030291 TCCAAGCAAGGTGACATGTTTT 58.970 40.909 0.00 0.00 29.79 2.43
379 381 4.240096 CAATTGATTCCAAGCAAGGTGAC 58.760 43.478 0.00 0.00 37.76 3.67
381 383 4.261578 ACAATTGATTCCAAGCAAGGTG 57.738 40.909 13.59 0.33 37.76 4.00
382 384 4.344679 TGAACAATTGATTCCAAGCAAGGT 59.655 37.500 13.59 0.00 37.76 3.50
398 400 4.535781 TGCTAGGCCATACAATGAACAAT 58.464 39.130 5.01 0.00 0.00 2.71
399 401 3.961849 TGCTAGGCCATACAATGAACAA 58.038 40.909 5.01 0.00 0.00 2.83
401 403 5.520376 AAATGCTAGGCCATACAATGAAC 57.480 39.130 5.01 0.00 0.00 3.18
402 404 5.655974 TGAAAATGCTAGGCCATACAATGAA 59.344 36.000 5.01 0.00 0.00 2.57
403 405 5.199723 TGAAAATGCTAGGCCATACAATGA 58.800 37.500 5.01 0.00 0.00 2.57
404 406 5.518848 TGAAAATGCTAGGCCATACAATG 57.481 39.130 5.01 0.00 0.00 2.82
405 407 6.543430 TTTGAAAATGCTAGGCCATACAAT 57.457 33.333 5.01 0.00 0.00 2.71
406 408 5.991933 TTTGAAAATGCTAGGCCATACAA 57.008 34.783 5.01 0.00 0.00 2.41
408 410 6.198966 CGAAATTTGAAAATGCTAGGCCATAC 59.801 38.462 5.01 0.00 0.00 2.39
409 411 6.096141 TCGAAATTTGAAAATGCTAGGCCATA 59.904 34.615 5.01 0.00 0.00 2.74
411 413 4.219507 TCGAAATTTGAAAATGCTAGGCCA 59.780 37.500 5.01 0.00 0.00 5.36
412 414 4.743493 TCGAAATTTGAAAATGCTAGGCC 58.257 39.130 0.00 0.00 0.00 5.19
413 415 6.704512 TTTCGAAATTTGAAAATGCTAGGC 57.295 33.333 6.47 0.00 32.70 3.93
414 416 7.219922 CGTTTTCGAAATTTGAAAATGCTAGG 58.780 34.615 21.06 5.56 44.44 3.02
433 435 0.458260 ACAAAGGGTGGTGCGTTTTC 59.542 50.000 0.00 0.00 0.00 2.29
436 438 1.826487 GGACAAAGGGTGGTGCGTT 60.826 57.895 0.00 0.00 0.00 4.84
438 440 1.528309 AAGGACAAAGGGTGGTGCG 60.528 57.895 0.00 0.00 0.00 5.34
439 441 0.755327 ACAAGGACAAAGGGTGGTGC 60.755 55.000 0.00 0.00 0.00 5.01
440 442 1.032014 CACAAGGACAAAGGGTGGTG 58.968 55.000 0.00 0.00 0.00 4.17
441 443 0.106217 CCACAAGGACAAAGGGTGGT 60.106 55.000 0.00 0.00 43.08 4.16
443 445 3.819245 TCCACAAGGACAAAGGGTG 57.181 52.632 0.00 0.00 39.61 4.61
453 455 1.954382 CATGCTCATCCATCCACAAGG 59.046 52.381 0.00 0.00 0.00 3.61
457 459 1.602311 GGTCATGCTCATCCATCCAC 58.398 55.000 0.00 0.00 0.00 4.02
458 460 0.475475 GGGTCATGCTCATCCATCCA 59.525 55.000 0.00 0.00 0.00 3.41
459 461 0.251077 GGGGTCATGCTCATCCATCC 60.251 60.000 0.00 0.00 0.00 3.51
460 462 0.604780 CGGGGTCATGCTCATCCATC 60.605 60.000 0.00 0.00 0.00 3.51
461 463 1.453235 CGGGGTCATGCTCATCCAT 59.547 57.895 0.00 0.00 0.00 3.41
473 475 1.228154 ACAGCTTTTGACCGGGGTC 60.228 57.895 6.32 10.95 44.77 4.46
474 476 1.228154 GACAGCTTTTGACCGGGGT 60.228 57.895 6.32 0.00 0.00 4.95
475 477 0.821711 TTGACAGCTTTTGACCGGGG 60.822 55.000 6.32 0.00 0.00 5.73
477 479 1.596954 CGTTTGACAGCTTTTGACCGG 60.597 52.381 0.00 0.00 0.00 5.28
478 480 1.063469 ACGTTTGACAGCTTTTGACCG 59.937 47.619 0.00 0.00 0.00 4.79
479 481 2.159435 ACACGTTTGACAGCTTTTGACC 60.159 45.455 0.00 0.00 0.00 4.02
480 482 2.845967 CACACGTTTGACAGCTTTTGAC 59.154 45.455 0.00 0.00 0.00 3.18
481 483 2.730715 GCACACGTTTGACAGCTTTTGA 60.731 45.455 5.75 0.00 0.00 2.69
482 484 1.583404 GCACACGTTTGACAGCTTTTG 59.417 47.619 5.75 0.00 0.00 2.44
485 487 1.724582 GGGCACACGTTTGACAGCTT 61.725 55.000 10.22 0.00 0.00 3.74
488 490 1.355210 GTGGGCACACGTTTGACAG 59.645 57.895 10.22 0.00 37.94 3.51
489 491 3.503749 GTGGGCACACGTTTGACA 58.496 55.556 10.22 2.70 37.94 3.58
502 504 2.693864 AGGATCCTGCTGGGTGGG 60.694 66.667 15.29 0.00 36.25 4.61
503 505 2.914289 GAGGATCCTGCTGGGTGG 59.086 66.667 22.02 0.00 36.25 4.61
514 516 4.022676 GTCTATTGAAGAGGACGGAGGATC 60.023 50.000 0.00 0.00 33.88 3.36
517 519 2.362717 GGTCTATTGAAGAGGACGGAGG 59.637 54.545 0.00 0.00 33.88 4.30
518 520 2.033550 CGGTCTATTGAAGAGGACGGAG 59.966 54.545 0.00 0.00 33.88 4.63
520 522 1.067212 CCGGTCTATTGAAGAGGACGG 59.933 57.143 8.24 8.24 39.40 4.79
521 523 1.749634 ACCGGTCTATTGAAGAGGACG 59.250 52.381 0.00 0.00 33.88 4.79
522 524 2.223525 CGACCGGTCTATTGAAGAGGAC 60.224 54.545 30.92 1.36 33.88 3.85
525 527 2.422479 TGTCGACCGGTCTATTGAAGAG 59.578 50.000 30.92 13.02 33.88 2.85
527 529 2.527100 GTGTCGACCGGTCTATTGAAG 58.473 52.381 30.92 14.47 0.00 3.02
528 530 1.135603 CGTGTCGACCGGTCTATTGAA 60.136 52.381 30.92 8.88 0.00 2.69
530 532 0.169672 ACGTGTCGACCGGTCTATTG 59.830 55.000 30.92 16.32 0.00 1.90
531 533 0.169672 CACGTGTCGACCGGTCTATT 59.830 55.000 30.92 7.53 0.00 1.73
533 535 2.969806 GCACGTGTCGACCGGTCTA 61.970 63.158 30.92 19.26 0.00 2.59
534 536 4.338539 GCACGTGTCGACCGGTCT 62.339 66.667 30.92 9.59 0.00 3.85
560 562 0.036294 GTGAAAAGAGGACGGAGGGG 60.036 60.000 0.00 0.00 0.00 4.79
561 563 0.036294 GGTGAAAAGAGGACGGAGGG 60.036 60.000 0.00 0.00 0.00 4.30
563 565 1.066787 GGAGGTGAAAAGAGGACGGAG 60.067 57.143 0.00 0.00 0.00 4.63
569 571 0.391793 GAGGCGGAGGTGAAAAGAGG 60.392 60.000 0.00 0.00 0.00 3.69
571 573 1.292223 CGAGGCGGAGGTGAAAAGA 59.708 57.895 0.00 0.00 0.00 2.52
572 574 1.004918 ACGAGGCGGAGGTGAAAAG 60.005 57.895 0.00 0.00 0.00 2.27
573 575 1.005394 GACGAGGCGGAGGTGAAAA 60.005 57.895 0.00 0.00 0.00 2.29
576 578 3.062466 CTGACGAGGCGGAGGTGA 61.062 66.667 0.00 0.00 0.00 4.02
577 579 4.803426 GCTGACGAGGCGGAGGTG 62.803 72.222 0.00 0.00 0.00 4.00
579 581 2.343163 CTTAGCTGACGAGGCGGAGG 62.343 65.000 0.00 0.00 34.52 4.30
580 582 1.064946 CTTAGCTGACGAGGCGGAG 59.935 63.158 0.00 0.00 34.52 4.63
584 586 2.202946 GCCCTTAGCTGACGAGGC 60.203 66.667 0.00 0.00 38.99 4.70
586 588 0.176680 ACATGCCCTTAGCTGACGAG 59.823 55.000 0.00 0.00 44.23 4.18
587 589 1.136305 GTACATGCCCTTAGCTGACGA 59.864 52.381 0.00 0.00 44.23 4.20
588 590 1.134818 TGTACATGCCCTTAGCTGACG 60.135 52.381 0.00 0.00 44.23 4.35
589 591 2.691409 TGTACATGCCCTTAGCTGAC 57.309 50.000 0.00 0.00 44.23 3.51
591 593 2.033801 GCATTGTACATGCCCTTAGCTG 59.966 50.000 15.31 0.00 44.23 4.24
592 594 2.301346 GCATTGTACATGCCCTTAGCT 58.699 47.619 15.31 0.00 44.23 3.32
593 595 2.023673 TGCATTGTACATGCCCTTAGC 58.976 47.619 20.37 8.01 43.94 3.09
594 596 4.083110 GCTATGCATTGTACATGCCCTTAG 60.083 45.833 20.37 18.23 43.94 2.18
595 597 3.820467 GCTATGCATTGTACATGCCCTTA 59.180 43.478 20.37 12.26 43.94 2.69
597 599 2.233271 GCTATGCATTGTACATGCCCT 58.767 47.619 20.37 13.49 43.94 5.19
603 605 3.117926 ACCATGAGGCTATGCATTGTACA 60.118 43.478 3.54 5.59 39.06 2.90
604 606 3.251729 CACCATGAGGCTATGCATTGTAC 59.748 47.826 3.54 0.42 39.06 2.90
608 610 3.154710 CATCACCATGAGGCTATGCATT 58.845 45.455 3.54 0.00 39.06 3.56
609 611 2.791655 CATCACCATGAGGCTATGCAT 58.208 47.619 3.79 3.79 39.06 3.96
610 612 2.265589 CATCACCATGAGGCTATGCA 57.734 50.000 0.00 0.00 39.06 3.96
617 619 1.890979 GCGAGGCATCACCATGAGG 60.891 63.158 0.00 0.00 43.14 3.86
618 620 1.153309 TGCGAGGCATCACCATGAG 60.153 57.895 0.00 0.00 43.14 2.90
629 631 2.256591 CCTACATGGCATGCGAGGC 61.257 63.158 26.96 0.00 32.09 4.70
631 633 1.436600 GATCCTACATGGCATGCGAG 58.563 55.000 26.70 22.01 35.26 5.03
634 636 0.035317 TCCGATCCTACATGGCATGC 59.965 55.000 26.70 9.90 35.26 4.06
636 638 4.033009 TCATATCCGATCCTACATGGCAT 58.967 43.478 0.00 0.00 35.26 4.40
637 639 3.195610 GTCATATCCGATCCTACATGGCA 59.804 47.826 0.00 0.00 35.26 4.92
638 640 3.735208 CGTCATATCCGATCCTACATGGC 60.735 52.174 0.00 0.00 35.26 4.40
640 642 4.703645 ACGTCATATCCGATCCTACATG 57.296 45.455 0.00 0.00 0.00 3.21
642 644 5.766670 ACTTTACGTCATATCCGATCCTACA 59.233 40.000 0.00 0.00 0.00 2.74
643 645 6.251655 ACTTTACGTCATATCCGATCCTAC 57.748 41.667 0.00 0.00 0.00 3.18
645 647 5.415077 CCTACTTTACGTCATATCCGATCCT 59.585 44.000 0.00 0.00 0.00 3.24
647 649 6.251655 ACCTACTTTACGTCATATCCGATC 57.748 41.667 0.00 0.00 0.00 3.69
648 650 6.567321 CGAACCTACTTTACGTCATATCCGAT 60.567 42.308 0.00 0.00 0.00 4.18
654 656 6.205464 CCTATCCGAACCTACTTTACGTCATA 59.795 42.308 0.00 0.00 0.00 2.15
656 658 4.336433 CCTATCCGAACCTACTTTACGTCA 59.664 45.833 0.00 0.00 0.00 4.35
657 659 4.261363 CCCTATCCGAACCTACTTTACGTC 60.261 50.000 0.00 0.00 0.00 4.34
658 660 3.633986 CCCTATCCGAACCTACTTTACGT 59.366 47.826 0.00 0.00 0.00 3.57
659 661 3.885297 TCCCTATCCGAACCTACTTTACG 59.115 47.826 0.00 0.00 0.00 3.18
660 662 5.738495 GCTTCCCTATCCGAACCTACTTTAC 60.738 48.000 0.00 0.00 0.00 2.01
661 663 4.343239 GCTTCCCTATCCGAACCTACTTTA 59.657 45.833 0.00 0.00 0.00 1.85
662 664 3.134262 GCTTCCCTATCCGAACCTACTTT 59.866 47.826 0.00 0.00 0.00 2.66
663 665 2.699321 GCTTCCCTATCCGAACCTACTT 59.301 50.000 0.00 0.00 0.00 2.24
664 666 2.317973 GCTTCCCTATCCGAACCTACT 58.682 52.381 0.00 0.00 0.00 2.57
667 669 1.400530 CCGCTTCCCTATCCGAACCT 61.401 60.000 0.00 0.00 0.00 3.50
668 670 1.069258 CCGCTTCCCTATCCGAACC 59.931 63.158 0.00 0.00 0.00 3.62
670 672 0.471211 ATCCCGCTTCCCTATCCGAA 60.471 55.000 0.00 0.00 0.00 4.30
672 674 1.592223 GATCCCGCTTCCCTATCCG 59.408 63.158 0.00 0.00 0.00 4.18
673 675 0.545548 AGGATCCCGCTTCCCTATCC 60.546 60.000 8.55 0.00 37.05 2.59
674 676 1.353091 AAGGATCCCGCTTCCCTATC 58.647 55.000 8.55 0.00 33.45 2.08
676 678 1.129058 GAAAGGATCCCGCTTCCCTA 58.871 55.000 8.55 0.00 33.45 3.53
677 679 1.636769 GGAAAGGATCCCGCTTCCCT 61.637 60.000 20.27 0.00 43.00 4.20
679 681 4.561452 GGAAAGGATCCCGCTTCC 57.439 61.111 17.67 17.67 43.00 3.46
696 698 1.002430 TCTTCAAGCACCAGCCTACTG 59.998 52.381 0.00 0.00 43.56 2.74
697 699 1.277557 CTCTTCAAGCACCAGCCTACT 59.722 52.381 0.00 0.00 43.56 2.57
698 700 1.276421 TCTCTTCAAGCACCAGCCTAC 59.724 52.381 0.00 0.00 43.56 3.18
702 704 3.067320 ACTTTTTCTCTTCAAGCACCAGC 59.933 43.478 0.00 0.00 42.56 4.85
703 705 4.096984 ACACTTTTTCTCTTCAAGCACCAG 59.903 41.667 0.00 0.00 0.00 4.00
704 706 4.016444 ACACTTTTTCTCTTCAAGCACCA 58.984 39.130 0.00 0.00 0.00 4.17
707 709 6.455360 AATCACACTTTTTCTCTTCAAGCA 57.545 33.333 0.00 0.00 0.00 3.91
708 710 5.622856 CGAATCACACTTTTTCTCTTCAAGC 59.377 40.000 0.00 0.00 0.00 4.01
709 711 6.138761 CCGAATCACACTTTTTCTCTTCAAG 58.861 40.000 0.00 0.00 0.00 3.02
710 712 5.588648 ACCGAATCACACTTTTTCTCTTCAA 59.411 36.000 0.00 0.00 0.00 2.69
713 715 5.007724 GTCACCGAATCACACTTTTTCTCTT 59.992 40.000 0.00 0.00 0.00 2.85
716 718 4.196193 TGTCACCGAATCACACTTTTTCT 58.804 39.130 0.00 0.00 0.00 2.52
720 722 4.733523 GCTTTTGTCACCGAATCACACTTT 60.734 41.667 0.00 0.00 0.00 2.66
723 725 2.290641 AGCTTTTGTCACCGAATCACAC 59.709 45.455 0.00 0.00 0.00 3.82
724 726 2.290367 CAGCTTTTGTCACCGAATCACA 59.710 45.455 0.00 0.00 0.00 3.58
725 727 2.548057 TCAGCTTTTGTCACCGAATCAC 59.452 45.455 0.00 0.00 0.00 3.06
728 730 4.338118 TCTTTTCAGCTTTTGTCACCGAAT 59.662 37.500 0.00 0.00 0.00 3.34
729 731 3.692101 TCTTTTCAGCTTTTGTCACCGAA 59.308 39.130 0.00 0.00 0.00 4.30
730 732 3.275143 TCTTTTCAGCTTTTGTCACCGA 58.725 40.909 0.00 0.00 0.00 4.69
732 734 4.746611 CCAATCTTTTCAGCTTTTGTCACC 59.253 41.667 0.00 0.00 0.00 4.02
733 735 5.591099 TCCAATCTTTTCAGCTTTTGTCAC 58.409 37.500 0.00 0.00 0.00 3.67
734 736 5.360714 ACTCCAATCTTTTCAGCTTTTGTCA 59.639 36.000 0.00 0.00 0.00 3.58
737 739 5.835257 TCACTCCAATCTTTTCAGCTTTTG 58.165 37.500 0.00 0.00 0.00 2.44
739 741 6.469782 TTTCACTCCAATCTTTTCAGCTTT 57.530 33.333 0.00 0.00 0.00 3.51
742 744 5.836347 ACTTTTCACTCCAATCTTTTCAGC 58.164 37.500 0.00 0.00 0.00 4.26
743 745 8.383318 TCTACTTTTCACTCCAATCTTTTCAG 57.617 34.615 0.00 0.00 0.00 3.02
745 747 8.608844 TCTCTACTTTTCACTCCAATCTTTTC 57.391 34.615 0.00 0.00 0.00 2.29
748 750 8.816894 TGTATCTCTACTTTTCACTCCAATCTT 58.183 33.333 0.00 0.00 0.00 2.40
750 752 9.039870 CATGTATCTCTACTTTTCACTCCAATC 57.960 37.037 0.00 0.00 0.00 2.67
751 753 8.543774 ACATGTATCTCTACTTTTCACTCCAAT 58.456 33.333 0.00 0.00 0.00 3.16
752 754 7.819415 CACATGTATCTCTACTTTTCACTCCAA 59.181 37.037 0.00 0.00 0.00 3.53
755 757 9.509855 CTACACATGTATCTCTACTTTTCACTC 57.490 37.037 0.00 0.00 0.00 3.51
756 758 9.026121 ACTACACATGTATCTCTACTTTTCACT 57.974 33.333 0.00 0.00 0.00 3.41
761 763 9.908747 AGACTACTACACATGTATCTCTACTTT 57.091 33.333 0.00 0.00 0.00 2.66
762 764 9.908747 AAGACTACTACACATGTATCTCTACTT 57.091 33.333 0.00 0.00 0.00 2.24
763 765 9.908747 AAAGACTACTACACATGTATCTCTACT 57.091 33.333 0.00 0.00 0.00 2.57
816 818 2.620367 CCCCAATGCAAGCTACCACTAA 60.620 50.000 0.00 0.00 0.00 2.24
819 821 0.323360 TCCCCAATGCAAGCTACCAC 60.323 55.000 0.00 0.00 0.00 4.16
825 827 2.837532 TTTTTCTCCCCAATGCAAGC 57.162 45.000 0.00 0.00 0.00 4.01
889 891 6.319405 GCATGTACAATGATGGCATATGGATA 59.681 38.462 0.00 0.00 33.44 2.59
890 892 5.126545 GCATGTACAATGATGGCATATGGAT 59.873 40.000 0.00 0.00 33.44 3.41
892 894 4.381185 GGCATGTACAATGATGGCATATGG 60.381 45.833 14.01 0.00 43.00 2.74
897 899 1.063792 AGGGCATGTACAATGATGGCA 60.064 47.619 18.87 0.00 44.77 4.92
898 900 1.696063 AGGGCATGTACAATGATGGC 58.304 50.000 11.25 11.25 42.82 4.40
899 901 4.261741 GCTTTAGGGCATGTACAATGATGG 60.262 45.833 0.00 0.00 0.00 3.51
903 905 3.316308 GGAGCTTTAGGGCATGTACAATG 59.684 47.826 0.00 0.12 34.17 2.82
904 906 3.053693 TGGAGCTTTAGGGCATGTACAAT 60.054 43.478 0.00 0.00 34.17 2.71
906 908 1.912731 TGGAGCTTTAGGGCATGTACA 59.087 47.619 0.00 0.00 34.17 2.90
909 911 1.616994 GGTTGGAGCTTTAGGGCATGT 60.617 52.381 0.00 0.00 34.17 3.21
910 912 1.106285 GGTTGGAGCTTTAGGGCATG 58.894 55.000 0.00 0.00 34.17 4.06
912 914 0.777446 AAGGTTGGAGCTTTAGGGCA 59.223 50.000 0.00 0.00 30.79 5.36
913 915 1.819288 GAAAGGTTGGAGCTTTAGGGC 59.181 52.381 5.24 0.00 44.89 5.19
915 917 4.884164 CCATAGAAAGGTTGGAGCTTTAGG 59.116 45.833 5.24 2.98 44.89 2.69
916 918 5.501156 ACCATAGAAAGGTTGGAGCTTTAG 58.499 41.667 5.24 0.00 44.89 1.85
917 919 5.250774 AGACCATAGAAAGGTTGGAGCTTTA 59.749 40.000 5.24 0.00 44.89 1.85
920 922 3.185455 AGACCATAGAAAGGTTGGAGCT 58.815 45.455 0.00 0.00 40.09 4.09
921 923 3.536570 GAGACCATAGAAAGGTTGGAGC 58.463 50.000 0.00 0.00 40.09 4.70
935 2736 3.111484 GAGAAGGAAGGAAGGAGACCAT 58.889 50.000 0.00 0.00 0.00 3.55
937 2738 2.541466 TGAGAAGGAAGGAAGGAGACC 58.459 52.381 0.00 0.00 0.00 3.85
1320 4093 3.749064 TCGTGGAGCTGCTCGTCC 61.749 66.667 25.34 11.22 0.00 4.79
1740 4606 4.516195 GAAGCGGGAGAGGACGGC 62.516 72.222 0.00 0.00 34.78 5.68
1741 4607 2.427245 ATGAAGCGGGAGAGGACGG 61.427 63.158 0.00 0.00 0.00 4.79
1742 4608 1.227089 CATGAAGCGGGAGAGGACG 60.227 63.158 0.00 0.00 0.00 4.79
1743 4609 1.144936 CCATGAAGCGGGAGAGGAC 59.855 63.158 0.00 0.00 0.00 3.85
1744 4610 1.001631 TCCATGAAGCGGGAGAGGA 59.998 57.895 0.00 0.00 0.00 3.71
1745 4611 1.144936 GTCCATGAAGCGGGAGAGG 59.855 63.158 0.00 0.00 32.85 3.69
1844 4727 2.368875 AGGAAGGAGACGAAAAGAGCAA 59.631 45.455 0.00 0.00 0.00 3.91
1855 4738 3.717913 TCTAGGACTAGGAGGAAGGAGAC 59.282 52.174 6.52 0.00 34.06 3.36
1947 4860 9.881649 GTCAATTGGATGCTAGATAGAATCATA 57.118 33.333 5.42 0.00 39.67 2.15
1948 4861 8.604184 AGTCAATTGGATGCTAGATAGAATCAT 58.396 33.333 5.42 0.00 39.67 2.45
1949 4862 7.971201 AGTCAATTGGATGCTAGATAGAATCA 58.029 34.615 5.42 0.00 39.67 2.57
1950 4863 9.364989 GTAGTCAATTGGATGCTAGATAGAATC 57.635 37.037 5.42 0.00 37.59 2.52
2025 5126 3.866651 CCTGTCTGTCTGGATTGGTAAG 58.133 50.000 0.00 0.00 37.33 2.34
2032 5133 0.546267 ACAGGCCTGTCTGTCTGGAT 60.546 55.000 33.20 5.90 43.82 3.41
2033 5134 1.152247 ACAGGCCTGTCTGTCTGGA 60.152 57.895 33.20 0.00 43.82 3.86
2037 5138 0.179018 AAACCACAGGCCTGTCTGTC 60.179 55.000 35.79 0.00 45.24 3.51
2088 5212 5.557891 ATTGAGCACAAATAGAAGAGCAC 57.442 39.130 0.00 0.00 39.54 4.40
2112 5236 2.472059 CCACGGCCGTCCATGAATG 61.472 63.158 31.80 14.92 0.00 2.67
2203 5355 6.073385 CGATCATTTGTCCCACAGATAAGATG 60.073 42.308 0.00 0.00 0.00 2.90
2308 5470 3.062763 GTCATGCGATTCGATTCCATCT 58.937 45.455 10.88 0.00 0.00 2.90
2402 5577 1.072015 GGATGCAAGCAGCTAGGATCT 59.928 52.381 10.32 0.00 45.94 2.75
2447 5629 4.419522 AGAATGTTGTTACGCCACATTC 57.580 40.909 18.90 18.90 43.92 2.67
2448 5630 5.001232 ACTAGAATGTTGTTACGCCACATT 58.999 37.500 0.00 6.97 34.22 2.71
2519 5730 4.677182 ACTTTCCCAGATAAACCAGCATT 58.323 39.130 0.00 0.00 0.00 3.56
2534 5745 2.035961 GGGACTTCAAGCAAACTTTCCC 59.964 50.000 0.00 0.00 40.42 3.97
2538 5749 3.018423 ACAGGGACTTCAAGCAAACTT 57.982 42.857 0.00 0.00 34.60 2.66
2577 5791 7.912250 CACACATAATGACATTAAGAAGAAGGC 59.088 37.037 15.45 0.00 0.00 4.35
2584 5798 9.283768 AGAACAACACACATAATGACATTAAGA 57.716 29.630 15.45 0.00 0.00 2.10
2586 5800 9.061435 TCAGAACAACACACATAATGACATTAA 57.939 29.630 11.80 0.00 0.00 1.40
2588 5802 7.509141 TCAGAACAACACACATAATGACATT 57.491 32.000 5.87 5.87 0.00 2.71
2605 5819 3.474798 AGGAGTAGGGACATCAGAACA 57.525 47.619 0.00 0.00 0.00 3.18
2606 5820 4.027437 AGAAGGAGTAGGGACATCAGAAC 58.973 47.826 0.00 0.00 0.00 3.01
2607 5821 4.338795 AGAAGGAGTAGGGACATCAGAA 57.661 45.455 0.00 0.00 0.00 3.02
2608 5822 4.338795 AAGAAGGAGTAGGGACATCAGA 57.661 45.455 0.00 0.00 0.00 3.27
2609 5823 5.046304 TCAAAAGAAGGAGTAGGGACATCAG 60.046 44.000 0.00 0.00 0.00 2.90
2610 5824 4.844085 TCAAAAGAAGGAGTAGGGACATCA 59.156 41.667 0.00 0.00 0.00 3.07
2611 5825 5.422214 TCAAAAGAAGGAGTAGGGACATC 57.578 43.478 0.00 0.00 0.00 3.06
2612 5826 5.843019 TTCAAAAGAAGGAGTAGGGACAT 57.157 39.130 0.00 0.00 0.00 3.06
2616 5830 8.986929 ATAATGATTCAAAAGAAGGAGTAGGG 57.013 34.615 0.00 0.00 0.00 3.53
2708 5995 1.730451 GGCAGGAGCTCCTCTACGAC 61.730 65.000 33.06 20.03 46.65 4.34
2726 6016 7.433719 GCATATATAGATGAACTAAGCGACTGG 59.566 40.741 11.53 0.00 34.56 4.00
2778 6070 1.256812 TCTGATCCGACTGCACTGAA 58.743 50.000 0.00 0.00 0.00 3.02
2792 6084 3.139850 GCATGCAGCAGAGTAATCTGAT 58.860 45.455 23.65 15.14 44.79 2.90
2827 6126 3.119637 ACGGTCGCCCAGAAATTAATTTG 60.120 43.478 17.98 5.59 0.00 2.32
2943 6243 3.708195 ATGCGCTGAAACTGCAATC 57.292 47.368 9.73 0.00 42.65 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.